AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000008.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000008.01.T01 MTR_3g115600 71.081 370 81 5 22 371 1 364 0.0 533
MsG0180000008.01.T01 MTR_5g006800 62.943 367 116 3 23 370 4 369 3.31e-168 474
MsG0180000008.01.T01 MTR_5g006710 64.365 362 103 5 28 370 9 363 9.40e-166 468
MsG0180000008.01.T01 MTR_5g006750 61.433 363 118 4 29 370 10 371 4.06e-160 454
MsG0180000008.01.T01 MTR_5g006670 62.881 361 108 5 29 370 6 359 4.64e-160 453
MsG0180000008.01.T01 MTR_5g006740 61.773 361 118 3 29 370 6 365 1.11e-159 452
MsG0180000008.01.T01 MTR_5g006780 62.259 363 115 4 29 370 10 371 1.65e-158 450
MsG0180000008.01.T01 MTR_5g008040 58.333 360 130 3 29 369 12 370 3.17e-151 431
MsG0180000008.01.T01 MTR_5g006720 59.392 362 125 5 20 370 2 352 3.24e-149 426
MsG0180000008.01.T01 MTR_5g006740 58.726 361 112 4 29 370 6 348 3.04e-144 412
MsG0180000008.01.T01 MTR_4g125470 49.865 371 153 4 31 369 19 388 1.82e-124 364
MsG0180000008.01.T01 MTR_5g006730 75.926 108 26 0 29 136 10 117 1.18e-55 179
MsG0180000008.01.T01 MTR_3g096570 55.882 102 37 4 190 289 3 98 9.89e-27 107
MsG0180000008.01.T01 MTR_3g096562 51.402 107 45 3 184 289 162 262 1.29e-25 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000008.01.T01 AT1G76680 60.326 368 126 2 24 372 5 371 1.97e-162 460
MsG0180000008.01.T01 AT1G76690 59.569 371 130 3 21 372 4 373 3.99e-161 456
MsG0180000008.01.T01 AT1G76680 56.489 393 126 3 24 372 5 396 1.09e-156 446
MsG0180000008.01.T01 AT1G09400 59.509 326 107 3 37 343 1 320 6.25e-137 393
MsG0180000008.01.T01 AT2G06050 47.244 381 164 5 25 369 6 385 1.67e-117 346
MsG0180000008.01.T01 AT2G06050 47.244 381 164 5 25 369 6 385 1.67e-117 346
MsG0180000008.01.T01 AT2G06050 47.244 381 164 5 25 369 6 385 1.67e-117 346
MsG0180000008.01.T01 AT1G17990 61.905 252 89 3 23 273 1 246 7.12e-114 333
MsG0180000008.01.T01 AT1G18020 61.905 252 89 3 23 273 1 246 7.12e-114 333
MsG0180000008.01.T01 AT1G09400 59.398 266 83 3 97 343 2 261 1.58e-107 316
MsG0180000008.01.T01 AT1G17990 59.127 252 88 4 23 273 1 238 1.96e-105 311

Find 105 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGATAGTACTAGTTATTT+TGG 0.113729 1:-270111 None:intergenic
GTCCAAATGCCAGGCGTATT+TGG 0.175163 1:-269112 None:intergenic
ATACACACACGTACCATATT+TGG 0.230489 1:-269230 None:intergenic
TAGATGGATAAGTCATTTAA+TGG 0.284493 1:+268396 None:intergenic
CCTTTGAACACCTTCCTAAT+AGG 0.291774 1:-269875 None:intergenic
AATGGTCCTTGATGCCTATT+AGG 0.301603 1:+269861 MsG0180000008.01.T01:CDS
GCTGCTGATCTAGTGGCTTA+TGG 0.307172 1:+269959 MsG0180000008.01.T01:CDS
AAAGGGACATTTATTGTTGC+TGG 0.324243 1:+269893 MsG0180000008.01.T01:CDS
GACAGGATCATGCGTATAAA+AGG 0.327954 1:-270062 None:intergenic
GGATTTCATTTGTGCTTAAT+CGG 0.331257 1:-269455 None:intergenic
ACTAAGGGTGGCTTCTTGAT+TGG 0.336328 1:+268741 MsG0180000008.01.T01:CDS
GGCTTGTTTGTGCATGATAT+TGG 0.338072 1:-269375 None:intergenic
GTGCGCCAAGTTCATGAAAA+AGG 0.339105 1:+269166 MsG0180000008.01.T01:CDS
CTAAGGGTGGCTTCTTGATT+GGG 0.342918 1:+268742 MsG0180000008.01.T01:CDS
TCCAAATGCCAGGCGTATTT+GGG 0.350536 1:-269111 None:intergenic
TATGACCTTGATCGCGTTAA+CGG 0.364577 1:-268669 None:intergenic
TTAAAGTTTCCCATCTTGTA+TGG 0.364982 1:-268498 None:intergenic
GTGAAGTAAGTAGAGATAGA+AGG 0.373385 1:+268421 MsG0180000008.01.T01:CDS
GACTCTGATCCTCAAGTATT+GGG 0.377448 1:+269741 MsG0180000008.01.T01:CDS
CCATCTTGTATGGGGTGAGC+AGG 0.381597 1:-268488 None:intergenic
ACCCAAATACGCCTGGCATT+TGG 0.384553 1:+269110 MsG0180000008.01.T01:CDS
TTGTTGCTGGAGGTTATGAT+AGG 0.394121 1:+269906 MsG0180000008.01.T01:CDS
ATTAGCTGCAGCAGGATCAT+TGG 0.397402 1:-269415 None:intergenic
TCATGAACTTGGCGCACAAT+TGG 0.406981 1:-269160 None:intergenic
ACCATATTTGGATACTCTTC+CGG 0.408173 1:-269218 None:intergenic
GATATTGGAGGTTTACCTTC+AGG 0.416474 1:-269360 None:intergenic
TTCTTGATTGGGGAAGCATC+TGG 0.424746 1:+268753 MsG0180000008.01.T01:CDS
GTATAAAAGGTAGTTGGATC+AGG 0.427027 1:-270049 None:intergenic
CTTGCTTGATCAATTTCTAA+AGG 0.427817 1:+269566 MsG0180000008.01.T01:CDS
AACGACAGAGATGACGAGTA+TGG 0.432506 1:+269597 MsG0180000008.01.T01:CDS
GCCGGAAGAGTATCCAAATA+TGG 0.433682 1:+269217 MsG0180000008.01.T01:CDS
TATACGCATGATCCTGTCCT+TGG 0.445992 1:+270067 MsG0180000008.01.T01:CDS
AATAGGCATCAAGGACCATT+TGG 0.455116 1:-269858 None:intergenic
TGGCATTTGGACAAGGGAAC+AGG 0.464254 1:+269123 MsG0180000008.01.T01:CDS
GTTAAATGTGTAACCATCCT+TGG 0.466998 1:-269822 None:intergenic
CATCTTGTATGGGGTGAGCA+GGG 0.471532 1:-268487 None:intergenic
TTATTCTCAAAGATCAACTA+AGG 0.473661 1:+268725 MsG0180000008.01.T01:CDS
AGAGATAGAAGGATGACTAA+AGG 0.476048 1:+268432 MsG0180000008.01.T01:CDS
GCAAGAAATGCCATGGAAGC+AGG 0.479264 1:+269507 MsG0180000008.01.T01:CDS
GTAGAGATACATGGAGCTAA+TGG 0.479754 1:+269540 MsG0180000008.01.T01:CDS
GTGCTTAATCGGCGAGGAGG+TGG 0.494140 1:-269444 None:intergenic
TTGGACAAGGGAACAGGTAG+AGG 0.495054 1:+269129 MsG0180000008.01.T01:CDS
TAAAGTTTCCCATCTTGTAT+GGG 0.501559 1:-268497 None:intergenic
TATGATAGGAGTGAAGGAAA+TGG 0.503378 1:+269920 MsG0180000008.01.T01:CDS
AGACTCTGATCCTCAAGTAT+TGG 0.505390 1:+269740 MsG0180000008.01.T01:CDS
TCCATCAAAACCTGCTTCCA+TGG 0.506298 1:-269517 None:intergenic
CCTGCTCACCCCATACAAGA+TGG 0.518048 1:+268488 MsG0180000008.01.T01:CDS
TGTTCCCTTGTCCAAATGCC+AGG 0.522788 1:-269121 None:intergenic
GGATATTGATTAGCTGCAGC+AGG 0.526559 1:-269423 None:intergenic
CTTCCCACTTCGAGTGGTGA+AGG 0.529500 1:+269644 MsG0180000008.01.T01:CDS
TTGGAGGTTTACCTTCAGGC+TGG 0.534090 1:-269356 None:intergenic
CCTATTAGGAAGGTGTTCAA+AGG 0.534129 1:+269875 MsG0180000008.01.T01:CDS
TTAATACGACAGGATAGTGT+TGG 0.537539 1:+268644 MsG0180000008.01.T01:intron
CACCTTCCTAATAGGCATCA+AGG 0.537835 1:-269867 None:intergenic
TTGGAGATATCTTTCTGAAG+AGG 0.538385 1:-269396 None:intergenic
TTGTTTGTGCATGATATTGG+AGG 0.543879 1:-269372 None:intergenic
CTATTAGGAAGGTGTTCAAA+GGG 0.545620 1:+269876 MsG0180000008.01.T01:CDS
TCATGCGTATAAAAGGTAGT+TGG 0.551693 1:-270055 None:intergenic
AAAAGGTACCCAAATACGCC+TGG 0.553805 1:+269103 MsG0180000008.01.T01:intron
ATCTTGTATGGGGTGAGCAG+GGG 0.554437 1:-268486 None:intergenic
TTTGATGGAGTAGAGATACA+TGG 0.555461 1:+269531 MsG0180000008.01.T01:CDS
ATACGCCTGGCATTTGGACA+AGG 0.556441 1:+269116 MsG0180000008.01.T01:CDS
TTCTGTCAACTTTGGCACGC+CGG 0.558422 1:+269199 MsG0180000008.01.T01:CDS
ATGTGGTGCTGCTGATCTAG+TGG 0.559206 1:+269952 MsG0180000008.01.T01:CDS
ACAAGTGTGACACCACCAAA+TGG 0.560123 1:+269843 MsG0180000008.01.T01:CDS
TGGCGCCGTTAACGCGATCA+AGG 0.570814 1:+268664 MsG0180000008.01.T01:CDS
GATGACTAAAGGAGAAGTAA+TGG 0.579090 1:+268443 MsG0180000008.01.T01:CDS
TAAGGGTGGCTTCTTGATTG+GGG 0.580264 1:+268743 MsG0180000008.01.T01:CDS
GTCCTTGATGCCTATTAGGA+AGG 0.582773 1:+269865 MsG0180000008.01.T01:CDS
ATGGATAATCACTATATCCA+AGG 0.584629 1:-270084 None:intergenic
TAATCACTATATCCAAGGAC+AGG 0.584850 1:-270079 None:intergenic
CTGCTCACCCCATACAAGAT+GGG 0.585227 1:+268489 MsG0180000008.01.T01:CDS
AAAGTTTCCCATCTTGTATG+GGG 0.586684 1:-268496 None:intergenic
GAAACTTTAATCTATCTCAC+AGG 0.587121 1:+268511 MsG0180000008.01.T01:CDS
AATTGCTGCAAGAAATGCCA+TGG 0.589036 1:+269500 MsG0180000008.01.T01:CDS
AAAGGAGAAGTAATGGTCGA+TGG 0.589838 1:+268450 MsG0180000008.01.T01:CDS
GGAGGTTATGATAGGAGTGA+AGG 0.591271 1:+269914 MsG0180000008.01.T01:CDS
TCTCAAAGATCAACTAAGGG+TGG 0.594762 1:+268729 MsG0180000008.01.T01:CDS
TTGTCGCTTCCCACTTCGAG+TGG 0.596275 1:+269638 MsG0180000008.01.T01:CDS
ACTGCCTTCACCACTCGAAG+TGG 0.598555 1:-269648 None:intergenic
TGAAGTCATTGACAAGCATG+TGG 0.600270 1:-269476 None:intergenic
GGGACATTTATTGTTGCTGG+AGG 0.600926 1:+269896 MsG0180000008.01.T01:CDS
AAGGCAGTAGCTGATGAGAT+CGG 0.601265 1:+269663 MsG0180000008.01.T01:CDS
AGGCATCAAGGACCATTTGG+TGG 0.602094 1:-269855 None:intergenic
TGATGAGATCGGAGCTGACA+AGG 0.615859 1:+269674 MsG0180000008.01.T01:CDS
TATAAAAGGTAGTTGGATCA+GGG 0.616334 1:-270048 None:intergenic
CAAGGGAACAGGTAGAGGCA+TGG 0.618836 1:+269134 MsG0180000008.01.T01:CDS
TCATATGATTGAGCCAAGGA+TGG 0.619695 1:+269809 MsG0180000008.01.T01:intron
GGTGTGTCTAACACAGCACA+AGG 0.629575 1:+268774 MsG0180000008.01.T01:CDS
TACGCCTGGCATTTGGACAA+GGG 0.635846 1:+269117 MsG0180000008.01.T01:CDS
ATGTAAATACCCAATACTTG+AGG 0.640485 1:-269750 None:intergenic
TTTGTGCTTAATCGGCGAGG+AGG 0.648362 1:-269447 None:intergenic
TATTCTCAAAGATCAACTAA+GGG 0.648427 1:+268726 MsG0180000008.01.T01:CDS
GATGTAGTATACCAGCCTGA+AGG 0.656347 1:+269345 MsG0180000008.01.T01:intron
AAAAGGTAGTTGGATCAGGG+TGG 0.658195 1:-270045 None:intergenic
CTGCCTTCACCACTCGAAGT+GGG 0.659608 1:-269647 None:intergenic
GAGATCGGAGCTGACAAGGT+TGG 0.665946 1:+269678 MsG0180000008.01.T01:CDS
TCATTTGTGCTTAATCGGCG+AGG 0.670046 1:-269450 None:intergenic
CAATCATTATAATCAGCGAA+AGG 0.671533 1:-269714 None:intergenic
GAATAATATGAAACAGCATG+AGG 0.679009 1:-268708 None:intergenic
GACAGAGATGACGAGTATGG+AGG 0.692429 1:+269600 MsG0180000008.01.T01:CDS
TAAAAGATTTGAACTCAACG+TGG 0.709690 1:+270012 MsG0180000008.01.T01:CDS
GAGCTGACAAGGTTGGTGTG+AGG 0.727383 1:+269685 MsG0180000008.01.T01:CDS
GGAAATGGTGCTATAGCATG+TGG 0.744862 1:+269935 MsG0180000008.01.T01:CDS
GTGTGTCTAACACAGCACAA+GGG 0.755183 1:+268775 MsG0180000008.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGATTAATAAAATTAC+CGG - Chr1:268864-268883 None:intergenic 10.0%
!! TAATAATATACACATATAAT+TGG + Chr1:269323-269342 MsG0180000008.01.T01:intron 10.0%
!! AATTTATAAATTAATTCGAC+CGG + Chr1:268842-268861 MsG0180000008.01.T01:intron 15.0%
!!! TTAATTTAATTTAATACGAC+AGG + Chr1:268634-268653 MsG0180000008.01.T01:intron 15.0%
!! ATGAAATAAAATCCTTGTAA+TGG - Chr1:269262-269281 None:intergenic 20.0%
!! TGAAATAAAATCCTTGTAAT+GGG - Chr1:269261-269280 None:intergenic 20.0%
!! TTGATGAGTGAAAAAATTAA+TGG + Chr1:268995-269014 MsG0180000008.01.T01:intron 20.0%
! AAACAACGCCAAAATTAATT+GGG + Chr1:268960-268979 MsG0180000008.01.T01:intron 25.0%
! AACATGGATGATCAAATAAA+AGG + Chr1:269086-269105 MsG0180000008.01.T01:intron 25.0%
! TATTCTCAAAGATCAACTAA+GGG + Chr1:268726-268745 MsG0180000008.01.T01:CDS 25.0%
! TTATTCTCAAAGATCAACTA+AGG + Chr1:268725-268744 MsG0180000008.01.T01:CDS 25.0%
!!! ATTTTTTCACTCATCAACAA+TGG - Chr1:268992-269011 None:intergenic 25.0%
!!! TGTGTGTGTTTTTTTCTTTT+TGG + Chr1:268586-268605 MsG0180000008.01.T01:intron 25.0%
ATGGATAATCACTATATCCA+AGG - Chr1:270087-270106 None:intergenic 30.0%
ATGTAAATACCCAATACTTG+AGG - Chr1:269753-269772 None:intergenic 30.0%
CAAACAACGCCAAAATTAAT+TGG + Chr1:268959-268978 MsG0180000008.01.T01:intron 30.0%
CAATCATTATAATCAGCGAA+AGG - Chr1:269717-269736 None:intergenic 30.0%
CCAAAGTTGACAGAAAAATA+TGG - Chr1:269194-269213 None:intergenic 30.0%
CTTGCTTGATCAATTTCTAA+AGG + Chr1:269566-269585 MsG0180000008.01.T01:CDS 30.0%
GAAACTTTAATCTATCTCAC+AGG + Chr1:268511-268530 MsG0180000008.01.T01:CDS 30.0%
GAATAATATGAAACAGCATG+AGG - Chr1:268711-268730 None:intergenic 30.0%
GAGTGAAAAAATTAATGGAG+CGG + Chr1:269000-269019 MsG0180000008.01.T01:intron 30.0%
GCTGAATCATTGAATCAATT+GGG + Chr1:269774-269793 MsG0180000008.01.T01:intron 30.0%
GGATTTCATTTGTGCTTAAT+CGG - Chr1:269458-269477 None:intergenic 30.0%
GTGTATATTATCCCATTACA+AGG + Chr1:269247-269266 MsG0180000008.01.T01:intron 30.0%
TAAAAGATTTGAACTCAACG+TGG + Chr1:270012-270031 MsG0180000008.01.T01:CDS 30.0%
TAAAGTTTCCCATCTTGTAT+GGG - Chr1:268500-268519 None:intergenic 30.0%
TATAAAAGGTAGTTGGATCA+GGG - Chr1:270051-270070 None:intergenic 30.0%
TTAAAGTTTCCCATCTTGTA+TGG - Chr1:268501-268520 None:intergenic 30.0%
! ACGTTGAGTTCAAATCTTTT+AGG - Chr1:270013-270032 None:intergenic 30.0%
! CCATATTTTTCTGTCAACTT+TGG + Chr1:269191-269210 MsG0180000008.01.T01:CDS 30.0%
! GGAATTTGCCCAATTAATTT+TGG - Chr1:268971-268990 None:intergenic 30.0%
!! AAAATTAATGGAGCGGATTT+TGG + Chr1:269007-269026 MsG0180000008.01.T01:intron 30.0%
!! CAATTAATTTTGGCGTTGTT+TGG - Chr1:268961-268980 None:intergenic 30.0%
!! TCAAATCTTTTAGGAAGATC+TGG - Chr1:270004-270023 None:intergenic 30.0%
!! TCAAGTATTGGGTATTTACA+TGG + Chr1:269752-269771 MsG0180000008.01.T01:intron 30.0%
!!! ACGAGAATGCTTTTTTAACA+TGG + Chr1:269070-269089 MsG0180000008.01.T01:intron 30.0%
AAAGGGACATTTATTGTTGC+TGG + Chr1:269893-269912 MsG0180000008.01.T01:CDS 35.0%
AAAGTTTCCCATCTTGTATG+GGG - Chr1:268499-268518 None:intergenic 35.0%
ACCATATTTGGATACTCTTC+CGG - Chr1:269221-269240 None:intergenic 35.0%
AGAGATAGAAGGATGACTAA+AGG + Chr1:268432-268451 MsG0180000008.01.T01:CDS 35.0%
ATACACACACGTACCATATT+TGG - Chr1:269233-269252 None:intergenic 35.0%
GATGACTAAAGGAGAAGTAA+TGG + Chr1:268443-268462 MsG0180000008.01.T01:CDS 35.0%
GGCTGAATCATTGAATCAAT+TGG + Chr1:269773-269792 MsG0180000008.01.T01:intron 35.0%
GTATAAAAGGTAGTTGGATC+AGG - Chr1:270052-270071 None:intergenic 35.0%
GTGAAGTAAGTAGAGATAGA+AGG + Chr1:268421-268440 MsG0180000008.01.T01:CDS 35.0%
GTTAAATGTGTAACCATCCT+TGG - Chr1:269825-269844 None:intergenic 35.0%
TAATCACTATATCCAAGGAC+AGG - Chr1:270082-270101 None:intergenic 35.0%
TATGATAGGAGTGAAGGAAA+TGG + Chr1:269920-269939 MsG0180000008.01.T01:CDS 35.0%
TCATGCGTATAAAAGGTAGT+TGG - Chr1:270058-270077 None:intergenic 35.0%
TTAATACGACAGGATAGTGT+TGG + Chr1:268644-268663 MsG0180000008.01.T01:intron 35.0%
TTGTTTGTGCATGATATTGG+AGG - Chr1:269375-269394 None:intergenic 35.0%
TTTGATGGAGTAGAGATACA+TGG + Chr1:269531-269550 MsG0180000008.01.T01:CDS 35.0%
! TTGGAGATATCTTTCTGAAG+AGG - Chr1:269399-269418 None:intergenic 35.0%
!! CTATTAGGAAGGTGTTCAAA+GGG + Chr1:269876-269895 MsG0180000008.01.T01:CDS 35.0%
AAAGGAGAAGTAATGGTCGA+TGG + Chr1:268450-268469 MsG0180000008.01.T01:CDS 40.0%
AATAGGCATCAAGGACCATT+TGG - Chr1:269861-269880 None:intergenic 40.0%
AATGGTCCTTGATGCCTATT+AGG + Chr1:269861-269880 MsG0180000008.01.T01:CDS 40.0%
AATTGCTGCAAGAAATGCCA+TGG + Chr1:269500-269519 MsG0180000008.01.T01:CDS 40.0%
ACTGTCATATGATTGAGCCA+AGG + Chr1:269805-269824 MsG0180000008.01.T01:intron 40.0%
AGACTCTGATCCTCAAGTAT+TGG + Chr1:269740-269759 MsG0180000008.01.T01:CDS 40.0%
CCTTTGAACACCTTCCTAAT+AGG - Chr1:269878-269897 None:intergenic 40.0%
GACAGGATCATGCGTATAAA+AGG - Chr1:270065-270084 None:intergenic 40.0%
GACTCTGATCCTCAAGTATT+GGG + Chr1:269741-269760 MsG0180000008.01.T01:CDS 40.0%
GATATTGGAGGTTTACCTTC+AGG - Chr1:269363-269382 None:intergenic 40.0%
GTAGAGATACATGGAGCTAA+TGG + Chr1:269540-269559 MsG0180000008.01.T01:CDS 40.0%
TATGACCTTGATCGCGTTAA+CGG - Chr1:268672-268691 None:intergenic 40.0%
TCATATGATTGAGCCAAGGA+TGG + Chr1:269809-269828 MsG0180000008.01.T01:intron 40.0%
TCTCAAAGATCAACTAAGGG+TGG + Chr1:268729-268748 MsG0180000008.01.T01:CDS 40.0%
TGAAGTCATTGACAAGCATG+TGG - Chr1:269479-269498 None:intergenic 40.0%
TTGTTGCTGGAGGTTATGAT+AGG + Chr1:269906-269925 MsG0180000008.01.T01:CDS 40.0%
! GGCTTGTTTGTGCATGATAT+TGG - Chr1:269378-269397 None:intergenic 40.0%
!! CCTATTAGGAAGGTGTTCAA+AGG + Chr1:269875-269894 MsG0180000008.01.T01:CDS 40.0%
!! TGGCTCCTTTTTCATGAACT+TGG - Chr1:269174-269193 None:intergenic 40.0%
AAAAGGTAGTTGGATCAGGG+TGG - Chr1:270048-270067 None:intergenic 45.0%
AACGACAGAGATGACGAGTA+TGG + Chr1:269597-269616 MsG0180000008.01.T01:CDS 45.0%
AAGGCAGTAGCTGATGAGAT+CGG + Chr1:269663-269682 MsG0180000008.01.T01:CDS 45.0%
ACAAGTGTGACACCACCAAA+TGG + Chr1:269843-269862 MsG0180000008.01.T01:CDS 45.0%
ACTAAGGGTGGCTTCTTGAT+TGG + Chr1:268741-268760 MsG0180000008.01.T01:CDS 45.0%
ATTAGCTGCAGCAGGATCAT+TGG - Chr1:269418-269437 None:intergenic 45.0%
CACCTTCCTAATAGGCATCA+AGG - Chr1:269870-269889 None:intergenic 45.0%
CTAAGGGTGGCTTCTTGATT+GGG + Chr1:268742-268761 MsG0180000008.01.T01:CDS 45.0%
GATGTAGTATACCAGCCTGA+AGG + Chr1:269345-269364 MsG0180000008.01.T01:intron 45.0%
GGAGGTTATGATAGGAGTGA+AGG + Chr1:269914-269933 MsG0180000008.01.T01:CDS 45.0%
GGGACATTTATTGTTGCTGG+AGG + Chr1:269896-269915 MsG0180000008.01.T01:CDS 45.0%
GTCCTTGATGCCTATTAGGA+AGG + Chr1:269865-269884 MsG0180000008.01.T01:CDS 45.0%
GTGCGCCAAGTTCATGAAAA+AGG + Chr1:269166-269185 MsG0180000008.01.T01:CDS 45.0%
GTGTGTCTAACACAGCACAA+GGG + Chr1:268775-268794 MsG0180000008.01.T01:CDS 45.0%
TAAGGGTGGCTTCTTGATTG+GGG + Chr1:268743-268762 MsG0180000008.01.T01:CDS 45.0%
TATACGCATGATCCTGTCCT+TGG + Chr1:270067-270086 MsG0180000008.01.T01:CDS 45.0%
TCATGAACTTGGCGCACAAT+TGG - Chr1:269163-269182 None:intergenic 45.0%
TCATTTGTGCTTAATCGGCG+AGG - Chr1:269453-269472 None:intergenic 45.0%
TCCAAATGCCAGGCGTATTT+GGG - Chr1:269114-269133 None:intergenic 45.0%
TCCATCAAAACCTGCTTCCA+TGG - Chr1:269520-269539 None:intergenic 45.0%
! GGATATTGATTAGCTGCAGC+AGG - Chr1:269426-269445 None:intergenic 45.0%
! GGCTTATGGACGTCTCTTTT+TGG + Chr1:269973-269992 MsG0180000008.01.T01:CDS 45.0%
!! AAAAGGTACCCAAATACGCC+TGG + Chr1:269103-269122 MsG0180000008.01.T01:intron 45.0%
!! GCCGGAAGAGTATCCAAATA+TGG + Chr1:269217-269236 MsG0180000008.01.T01:CDS 45.0%
!! GGAAATGGTGCTATAGCATG+TGG + Chr1:269935-269954 MsG0180000008.01.T01:CDS 45.0%
!! TTCTTGATTGGGGAAGCATC+TGG + Chr1:268753-268772 MsG0180000008.01.T01:CDS 45.0%
ACCCAAATACGCCTGGCATT+TGG + Chr1:269110-269129 MsG0180000008.01.T01:CDS 50.0%
AGGCATCAAGGACCATTTGG+TGG - Chr1:269858-269877 None:intergenic 50.0%
ATACGCCTGGCATTTGGACA+AGG + Chr1:269116-269135 MsG0180000008.01.T01:CDS 50.0%
ATCTTGTATGGGGTGAGCAG+GGG - Chr1:268489-268508 None:intergenic 50.0%
CATCTTGTATGGGGTGAGCA+GGG - Chr1:268490-268509 None:intergenic 50.0%
CTGCTCACCCCATACAAGAT+GGG + Chr1:268489-268508 MsG0180000008.01.T01:CDS 50.0%
GACAGAGATGACGAGTATGG+AGG + Chr1:269600-269619 MsG0180000008.01.T01:CDS 50.0%
GCAAGAAATGCCATGGAAGC+AGG + Chr1:269507-269526 MsG0180000008.01.T01:CDS 50.0%
GCTGCTGATCTAGTGGCTTA+TGG + Chr1:269959-269978 MsG0180000008.01.T01:CDS 50.0%
GGTGTGTCTAACACAGCACA+AGG + Chr1:268774-268793 MsG0180000008.01.T01:CDS 50.0%
GTCCAAATGCCAGGCGTATT+TGG - Chr1:269115-269134 None:intergenic 50.0%
TACGCCTGGCATTTGGACAA+GGG + Chr1:269117-269136 MsG0180000008.01.T01:CDS 50.0%
TGATGAGATCGGAGCTGACA+AGG + Chr1:269674-269693 MsG0180000008.01.T01:CDS 50.0%
TGGCATTTGGACAAGGGAAC+AGG + Chr1:269123-269142 MsG0180000008.01.T01:CDS 50.0%
TGTTCCCTTGTCCAAATGCC+AGG - Chr1:269124-269143 None:intergenic 50.0%
TTCTGTCAACTTTGGCACGC+CGG + Chr1:269199-269218 MsG0180000008.01.T01:CDS 50.0%
TTGGACAAGGGAACAGGTAG+AGG + Chr1:269129-269148 MsG0180000008.01.T01:CDS 50.0%
TTGGAGGTTTACCTTCAGGC+TGG - Chr1:269359-269378 None:intergenic 50.0%
TTTGTGCTTAATCGGCGAGG+AGG - Chr1:269450-269469 None:intergenic 50.0%
!! ATGTGGTGCTGCTGATCTAG+TGG + Chr1:269952-269971 MsG0180000008.01.T01:CDS 50.0%
!! GCCATGGAAGCAGGTTTTGA+TGG + Chr1:269516-269535 MsG0180000008.01.T01:CDS 50.0%
ACTGCCTTCACCACTCGAAG+TGG - Chr1:269651-269670 None:intergenic 55.0%
CAAGGGAACAGGTAGAGGCA+TGG + Chr1:269134-269153 MsG0180000008.01.T01:CDS 55.0%
CCATCTTGTATGGGGTGAGC+AGG - Chr1:268491-268510 None:intergenic 55.0%
CCTGCTCACCCCATACAAGA+TGG + Chr1:268488-268507 MsG0180000008.01.T01:CDS 55.0%
CTGCCTTCACCACTCGAAGT+GGG - Chr1:269650-269669 None:intergenic 55.0%
CTTCCCACTTCGAGTGGTGA+AGG + Chr1:269644-269663 MsG0180000008.01.T01:CDS 55.0%
GAGATCGGAGCTGACAAGGT+TGG + Chr1:269678-269697 MsG0180000008.01.T01:CDS 55.0%
! TTGTCGCTTCCCACTTCGAG+TGG + Chr1:269638-269657 MsG0180000008.01.T01:CDS 55.0%
!! GAGCTGACAAGGTTGGTGTG+AGG + Chr1:269685-269704 MsG0180000008.01.T01:CDS 55.0%
GTGCTTAATCGGCGAGGAGG+TGG - Chr1:269447-269466 None:intergenic 60.0%
TGGCGCCGTTAACGCGATCA+AGG + Chr1:268664-268683 MsG0180000008.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 268399 270123 268399 ID=MsG0180000008.01;Name=MsG0180000008.01
Chr1 mRNA 268399 270123 268399 ID=MsG0180000008.01.T01;Parent=MsG0180000008.01;Name=MsG0180000008.01.T01;_AED=0.23;_eAED=0.28;_QI=0|0|0|1|1|1|5|0|372
Chr1 exon 268399 268532 268399 ID=MsG0180000008.01.T01:exon:7980;Parent=MsG0180000008.01.T01
Chr1 exon 268656 268796 268656 ID=MsG0180000008.01.T01:exon:7979;Parent=MsG0180000008.01.T01
Chr1 exon 269108 269238 269108 ID=MsG0180000008.01.T01:exon:7978;Parent=MsG0180000008.01.T01
Chr1 exon 269352 269762 269352 ID=MsG0180000008.01.T01:exon:7977;Parent=MsG0180000008.01.T01
Chr1 exon 269822 270123 269822 ID=MsG0180000008.01.T01:exon:7976;Parent=MsG0180000008.01.T01
Chr1 CDS 268399 268532 268399 ID=MsG0180000008.01.T01:cds;Parent=MsG0180000008.01.T01
Chr1 CDS 268656 268796 268656 ID=MsG0180000008.01.T01:cds;Parent=MsG0180000008.01.T01
Chr1 CDS 269108 269238 269108 ID=MsG0180000008.01.T01:cds;Parent=MsG0180000008.01.T01
Chr1 CDS 269352 269762 269352 ID=MsG0180000008.01.T01:cds;Parent=MsG0180000008.01.T01
Chr1 CDS 269822 270123 269822 ID=MsG0180000008.01.T01:cds;Parent=MsG0180000008.01.T01
Gene Sequence

>MsG0180000008.01.T01

ATGGATAAGTCATTTAATGGTTGTGAAGTAAGTAGAGATAGAAGGATGACTAAAGGAGAAGTAATGGTCGATGGAAGAGAGACAATGCCCCTGCTCACCCCATACAAGATGGGAAACTTTAATCTATCTCACAGGATAGTGTTGGCGCCGTTAACGCGATCAAGGTCATACAACTTTGTCGCTCAGCCTCATGCTGTTTCATATTATTCTCAAAGATCAACTAAGGGTGGCTTCTTGATTGGGGAAGCATCTGGTGTGTCTAACACAGCACAAGGGTACCCAAATACGCCTGGCATTTGGACAAGGGAACAGGTAGAGGCATGGAAACCAATTGTGCGCCAAGTTCATGAAAAAGGAGCCATATTTTTCTGTCAACTTTGGCACGCCGGAAGAGTATCCAAATATGTATACCAGCCTGAAGGTAAACCTCCAATATCATGCACAAACAAGCCTCTTCAGAAAGATATCTCCAATGATCCTGCTGCAGCTAATCAATATCCACCTCCTCGCCGATTAAGCACAAATGAAATCCACATGCTTGTCAATGACTTCAAAATTGCTGCAAGAAATGCCATGGAAGCAGGTTTTGATGGAGTAGAGATACATGGAGCTAATGGCTACTTGCTTGATCAATTTCTAAAGGACAAAGTGAACGACAGAGATGACGAGTATGGAGGTAACTTAGAGAATCGTTGTCGCTTCCCACTTCGAGTGGTGAAGGCAGTAGCTGATGAGATCGGAGCTGACAAGGTTGGTGTGAGGTTGTCGCCTTTCGCTGATTATAATGATTGTGCAGACTCTGATCCTCAAGTATTGGCCAAGGATGGTTACACATTTAACAAGTGTGACACCACCAAATGGTCCTTGATGCCTATTAGGAAGGTGTTCAAAGGGACATTTATTGTTGCTGGAGGTTATGATAGGAGTGAAGGAAATGGTGCTATAGCATGTGGTGCTGCTGATCTAGTGGCTTATGGACGTCTCTTTTTGGCAAATCCAGATCTTCCTAAAAGATTTGAACTCAACGTGGATGAGTTCAACCACCCTGATCCAACTACCTTTTATACGCATGATCCTGTCCTTGGATATAGTGATTATCCATTTCTCCAAAATAACTAG

Protein sequence

>MsG0180000008.01.T01

MDKSFNGCEVSRDRRMTKGEVMVDGRETMPLLTPYKMGNFNLSHRIVLAPLTRSRSYNFVAQPHAVSYYSQRSTKGGFLIGEASGVSNTAQGYPNTPGIWTREQVEAWKPIVRQVHEKGAIFFCQLWHAGRVSKYVYQPEGKPPISCTNKPLQKDISNDPAAANQYPPPRRLSTNEIHMLVNDFKIAARNAMEAGFDGVEIHGANGYLLDQFLKDKVNDRDDEYGGNLENRCRFPLRVVKAVADEIGADKVGVRLSPFADYNDCADSDPQVLAKDGYTFNKCDTTKWSLMPIRKVFKGTFIVAGGYDRSEGNGAIACGAADLVAYGRLFLANPDLPKRFELNVDEFNHPDPTTFYTHDPVLGYSDYPFLQNN*