AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014517.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014517.01.T01 MTR_3g058660 77.716 359 24 3 34 336 2 360 0.0 528
MsG0380014517.01.T01 MTR_6g082540 78.035 173 31 1 162 334 4 169 1.15e-91 271
MsG0380014517.01.T01 MTR_4g098900 41.983 343 123 4 45 328 33 358 5.45e-86 265
MsG0380014517.01.T01 MTR_2g015470 53.744 227 105 0 88 314 137 363 1.07e-85 263
MsG0380014517.01.T01 MTR_7g080750 51.770 226 96 1 88 313 121 333 2.10e-70 223
MsG0380014517.01.T01 MTR_3g099750 39.640 222 134 0 88 309 122 343 4.12e-50 171
MsG0380014517.01.T01 MTR_3g099740 37.387 222 139 0 88 309 123 344 2.22e-46 161
MsG0380014517.01.T01 MTR_5g065080 36.735 245 153 2 87 330 119 362 8.16e-45 157
MsG0380014517.01.T01 MTR_8g024620 29.360 344 191 4 23 314 13 356 4.00e-40 144
MsG0380014517.01.T01 MTR_8g024620 29.360 344 191 4 23 314 24 367 4.13e-40 145
MsG0380014517.01.T01 MTR_8g024620 29.360 344 191 4 23 314 25 368 4.21e-40 145
MsG0380014517.01.T01 MTR_2g437590 29.333 375 202 8 3 322 31 397 4.80e-36 135
MsG0380014517.01.T01 MTR_2g437580 35.398 226 140 4 88 311 143 364 5.57e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014517.01.T01 AT4G18210 50.392 383 130 3 1 325 1 381 8.32e-127 369
MsG0380014517.01.T01 AT4G18220 50.392 383 130 3 1 325 1 381 5.41e-125 364
MsG0380014517.01.T01 AT4G18205 45.812 382 137 5 5 333 13 377 1.30e-101 304
MsG0380014517.01.T01 AT4G18195 47.326 374 142 3 16 336 16 387 3.09e-99 298
MsG0380014517.01.T01 AT4G18197 43.928 387 154 4 9 336 1 383 3.17e-95 288
MsG0380014517.01.T01 AT4G18190 46.281 363 131 4 12 314 2 360 1.28e-90 276
MsG0380014517.01.T01 AT1G44750 45.141 319 125 1 45 313 30 348 2.96e-89 272
MsG0380014517.01.T01 AT1G44750 45.141 319 125 1 45 313 30 348 2.96e-89 272
MsG0380014517.01.T01 AT1G44750 45.141 319 125 1 45 313 42 360 3.08e-89 272
MsG0380014517.01.T01 AT1G44750 54.425 226 103 0 88 313 59 284 1.05e-81 251
MsG0380014517.01.T01 AT1G44750 54.425 226 103 0 88 313 59 284 1.05e-81 251
MsG0380014517.01.T01 AT1G44750 54.425 226 103 0 88 313 59 284 1.05e-81 251
MsG0380014517.01.T01 AT1G44750 54.425 226 103 0 88 313 59 284 1.05e-81 251
MsG0380014517.01.T01 AT1G44750 54.425 226 103 0 88 313 59 284 1.05e-81 251
MsG0380014517.01.T01 AT4G08700 37.500 360 167 3 1 313 1 349 7.05e-73 230
MsG0380014517.01.T01 AT5G41160 35.813 363 172 3 1 313 1 352 1.78e-66 213
MsG0380014517.01.T01 AT2G33750 41.525 236 136 1 88 323 102 335 1.90e-54 182
MsG0380014517.01.T01 AT1G28220 37.719 228 142 0 88 315 100 327 3.91e-51 173
MsG0380014517.01.T01 AT2G33750 39.676 247 136 2 88 323 102 346 4.00e-51 173
MsG0380014517.01.T01 AT1G28230 37.021 235 147 1 88 321 106 340 1.35e-47 164
MsG0380014517.01.T01 AT1G19770 33.755 237 145 3 88 313 154 389 4.03e-37 137
MsG0380014517.01.T01 AT1G47603 28.351 388 190 11 15 323 13 391 3.65e-30 119
MsG0380014517.01.T01 AT2G24220 26.230 305 178 3 45 302 54 358 9.89e-30 117
MsG0380014517.01.T01 AT2G24220 26.230 305 178 3 45 302 36 340 1.18e-29 117
MsG0380014517.01.T01 AT1G75470 31.381 239 148 4 92 315 146 383 3.26e-28 113
MsG0380014517.01.T01 AT1G57980 28.723 376 184 10 12 307 1 372 1.27e-25 106
MsG0380014517.01.T01 AT1G57990 27.493 371 191 9 12 307 1 368 1.77e-24 103
MsG0380014517.01.T01 AT1G57943 33.846 195 121 3 97 284 156 349 4.79e-22 96.3
MsG0380014517.01.T01 AT1G57943 33.846 195 121 3 97 284 157 350 5.12e-22 96.3
MsG0380014517.01.T01 AT1G09860 32.474 194 122 3 99 284 142 334 2.30e-17 82.8
MsG0380014517.01.T01 AT1G30840 25.672 335 191 5 26 307 7 336 1.84e-14 73.9
MsG0380014517.01.T01 AT1G30840 25.672 335 191 5 26 307 7 336 1.84e-14 73.9

Find 74 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTCACTTTCTAAATA+TGG 0.164512 3:-55952126 MsG0380014517.01.T01:exon
CTCCAATGAGAATGTTTCTT+TGG 0.196693 3:+55950768 None:intergenic
TTCTATGGTACTAGCTGTTT+GGG 0.219148 3:-55949771 MsG0380014517.01.T01:CDS
ATAATGCATTGAAACCTAAT+TGG 0.241997 3:+55950341 None:intergenic
TAATTGATCCATTCGTTATT+TGG 0.243206 3:+55950728 None:intergenic
ATATGTGTATCAACAATATT+TGG 0.244480 3:-55949738 MsG0380014517.01.T01:CDS
CTTATTTGCTCATCCCAATT+AGG 0.250351 3:-55950355 MsG0380014517.01.T01:CDS
GGAAGATTATACTATGAAAA+AGG 0.278195 3:-55950619 MsG0380014517.01.T01:CDS
TTTCTATGGTACTAGCTGTT+TGG 0.287753 3:-55949772 MsG0380014517.01.T01:CDS
AGACAAAATGCATGGGATTA+AGG 0.299496 3:-55949798 MsG0380014517.01.T01:CDS
AGAATGTTTCTTTGGCTTCA+TGG 0.313976 3:+55950776 None:intergenic
TTCATTCACTTTCTAAATAT+GGG 0.319627 3:-55952125 MsG0380014517.01.T01:exon
TGGGATTAAGGCCATTTCTA+TGG 0.331205 3:-55949786 MsG0380014517.01.T01:CDS
GTGAGGAGTGTTTCTTGTTT+CGG 0.337873 3:+55949697 None:intergenic
GTCTTTAGTATTGGTTGTGT+TGG 0.355728 3:-55949911 MsG0380014517.01.T01:CDS
TCTTGAAAGCTAGTTGTGTA+AGG 0.383818 3:+55950128 None:intergenic
ACAGCTAATATAGGAACAAT+AGG 0.391827 3:+55949833 None:intergenic
GGAAACATTTGTGGAATTTG+AGG 0.396482 3:+55950219 None:intergenic
ACTAAAGACTTGCCATGTTA+TGG 0.397777 3:+55949925 None:intergenic
TGCACTTTAGTTGCATCTGC+AGG 0.400863 3:-55950169 MsG0380014517.01.T01:CDS
GATCCATTCGTTATTTGGTC+TGG 0.422102 3:+55950733 None:intergenic
AAGAAAACCACAGCTAATAT+AGG 0.424462 3:+55949824 None:intergenic
TCCAAGAAAATGTATTGGAT+TGG 0.426703 3:-55950199 MsG0380014517.01.T01:CDS
TTAGTTGCATCTGCAGGGTA+TGG 0.427771 3:-55950163 MsG0380014517.01.T01:CDS
TATGCAGCACTTGTCTTAGC+AGG 0.431417 3:-55950664 MsG0380014517.01.T01:CDS
GAAAATAGTGAGAGTTAAGA+CGG 0.434043 3:+55952170 None:intergenic
GGGAGGAAGAAATTGTTAGA+AGG 0.435023 3:+55950263 None:intergenic
GTTAAGACGGGAGAAGTGTT+TGG 0.437251 3:+55952183 None:intergenic
ATGTTTCCAAGAAAATGTAT+TGG 0.439252 3:-55950204 MsG0380014517.01.T01:CDS
ATAAGTGTAAAAGTAGAGAC+AGG 0.447522 3:+55950373 None:intergenic
TAATGCATTGAAACCTAATT+GGG 0.449877 3:+55950342 None:intergenic
GAATGGTATAAAGAAAGAAA+TGG 0.452288 3:-55949999 MsG0380014517.01.T01:CDS
GAAATGGAAGATTATGAGAT+GGG 0.453956 3:-55949983 MsG0380014517.01.T01:CDS
ACATGGCAAGTCTTTAGTAT+TGG 0.454459 3:-55949920 MsG0380014517.01.T01:CDS
CATGATAATATATACACAAT+TGG 0.457768 3:-55950068 MsG0380014517.01.T01:CDS
AGCCAAAGAAACATTCTCAT+TGG 0.458851 3:-55950770 MsG0380014517.01.T01:CDS
AACAGCTAGTACCATAGAAA+TGG 0.466085 3:+55949775 None:intergenic
GCAACCGTTGTTCAACTAGC+TGG 0.475269 3:-55950577 MsG0380014517.01.T01:intron
AAAATAGTGAGAGTTAAGAC+GGG 0.479450 3:+55952171 None:intergenic
CTAAAAGTGTTGCAGCGGAT+TGG 0.480545 3:+55950641 None:intergenic
TTCTTTCAAGACAAAATGCA+TGG 0.482674 3:-55949806 MsG0380014517.01.T01:CDS
TGGAATTTGAGGACTCACTT+TGG 0.488137 3:+55950230 None:intergenic
GCTACTTGTATTACTCTAGT+AGG 0.496365 3:-55950043 MsG0380014517.01.T01:CDS
TATTGTTCCTATATTAGCTG+TGG 0.512942 3:-55949831 MsG0380014517.01.T01:CDS
CTTTCAAGAAGGTTGTGAAA+AGG 0.516513 3:-55950114 MsG0380014517.01.T01:CDS
CTTGAGTGAATTGAGGAAGT+AGG 0.525823 3:+55950315 None:intergenic
GAAAAGAATATACTATATCA+AGG 0.526990 3:-55950695 MsG0380014517.01.T01:CDS
AGAAATGGAAGATTATGAGA+TGG 0.531654 3:-55949984 MsG0380014517.01.T01:CDS
ACTAAAGAGTTGATTATGAA+AGG 0.535009 3:+55950286 None:intergenic
CTTGAAAGCTAGTTGTGTAA+GGG 0.540792 3:+55950129 None:intergenic
AGTGAATGAAATAACTTGAG+AGG 0.541882 3:+55952138 None:intergenic
CATTCTTCAACTTTAGAAGA+GGG 0.542067 3:-55949665 MsG0380014517.01.T01:CDS
AGGACTCACTTTGGAACACA+AGG 0.547523 3:+55950239 None:intergenic
TGGCTATGAAAGTCAGATCA+AGG 0.554419 3:+55949945 None:intergenic
AAGCTAGTTGTGTAAGGGAA+AGG 0.557780 3:+55950134 None:intergenic
TACACAACTAGCTTTCAAGA+AGG 0.562208 3:-55950125 MsG0380014517.01.T01:CDS
TCTTTCAAGACAAAATGCAT+GGG 0.582272 3:-55949805 MsG0380014517.01.T01:CDS
TCTATGGTACTAGCTGTTTG+GGG 0.589297 3:-55949770 MsG0380014517.01.T01:CDS
TTTGCAAGTGGAGAGTGGAA+TGG 0.589737 3:-55950016 MsG0380014517.01.T01:CDS
GCACTTTAGTTGCATCTGCA+GGG 0.593181 3:-55950168 MsG0380014517.01.T01:CDS
ACATTCTTCAACTTTAGAAG+AGG 0.593996 3:-55949666 MsG0380014517.01.T01:CDS
AGGAGGAAAGAGTAAATGGA+TGG 0.594332 3:-55950599 MsG0380014517.01.T01:CDS
TCTTCCTAAAAGTGTTGCAG+CGG 0.607054 3:+55950636 None:intergenic
TCTTCAACTTTAGAAGAGGG+TGG 0.611482 3:-55949662 MsG0380014517.01.T01:CDS
GTGTGAACTTGAGTGAATTG+AGG 0.627114 3:+55950308 None:intergenic
TTTCCAGACCAAATAACGAA+TGG 0.633752 3:-55950736 MsG0380014517.01.T01:CDS
AAATGGAAGATTATGAGATG+GGG 0.636592 3:-55949982 MsG0380014517.01.T01:CDS
CTCACTTTGGAACACAAGGA+GGG 0.640434 3:+55950243 None:intergenic
TAAGTGTAAAAGTAGAGACA+GGG 0.654814 3:+55950374 None:intergenic
TGACTTTCATAGCCATAACA+TGG 0.656519 3:-55949937 MsG0380014517.01.T01:CDS
ACTCACTTTGGAACACAAGG+AGG 0.662657 3:+55950242 None:intergenic
GAAGAATGTTTGCTAATGTG+AGG 0.676409 3:+55949680 None:intergenic
ACTTTGGAACACAAGGAGGG+AGG 0.681387 3:+55950246 None:intergenic
GAAACCAGCTAGTTGAACAA+CGG 0.701516 3:+55950573 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAACTTTCAAAAA+CGG - Chr3:55949910-55949929 MsG0380014517.01.T01:CDS 10.0%
!! ATATCATATATCATTAATAT+TGG + Chr3:55951015-55951034 None:intergenic 10.0%
!! AACAATGATATTATTATTTG+TGG + Chr3:55951354-55951373 None:intergenic 15.0%
!! AACATTTACATATCTATATA+TGG + Chr3:55950628-55950647 None:intergenic 15.0%
!! ACATTTACATATCTATATAT+GGG + Chr3:55950627-55950646 None:intergenic 15.0%
!! ATTGAAAAAAAAAAATGCAA+AGG - Chr3:55950937-55950956 MsG0380014517.01.T01:intron 15.0%
!! CTAATAATATCTTTCAAAAA+CGG - Chr3:55949873-55949892 MsG0380014517.01.T01:CDS 15.0%
!! GATAAGATGAAAAAATAATA+TGG + Chr3:55951317-55951336 None:intergenic 15.0%
!! TACTTCAAAATAATAGAAAA+TGG - Chr3:55950687-55950706 MsG0380014517.01.T01:CDS 15.0%
!! TTTGAACTAATATTAACTAA+AGG - Chr3:55950102-55950121 MsG0380014517.01.T01:CDS 15.0%
!!! ATAGTATATTCTTTTCTTAT+TGG + Chr3:55951153-55951172 None:intergenic 15.0%
!!! GTTTTTTTTTTATGTAAAAG+TGG - Chr3:55950882-55950901 MsG0380014517.01.T01:intron 15.0%
!!! TCATCTTAATTATTTTAGTA+AGG - Chr3:55950025-55950044 MsG0380014517.01.T01:CDS 15.0%
!!! TTATTTTATTTTTTTTACCG+TGG - Chr3:55950467-55950486 MsG0380014517.01.T01:intron 15.0%
!! AAATAATATGGTAGTAGAAT+TGG + Chr3:55951305-55951324 None:intergenic 20.0%
!! AATAATATGGTAGTAGAATT+GGG + Chr3:55951304-55951323 None:intergenic 20.0%
!! AGCAAATTAATGCATTAATT+AGG + Chr3:55951430-55951449 None:intergenic 20.0%
!! ATATGTGTATCAACAATATT+TGG - Chr3:55952114-55952133 MsG0380014517.01.T01:exon 20.0%
!! ATTTATACTGCGATAAATAT+TGG - Chr3:55950851-55950870 MsG0380014517.01.T01:intron 20.0%
!! CAAAATTTACTCAAATTACA+GGG + Chr3:55950351-55950370 None:intergenic 20.0%
!! CATGATAATATATACACAAT+TGG - Chr3:55951784-55951803 MsG0380014517.01.T01:intron 20.0%
!! CATTTACATATCTATATATG+GGG + Chr3:55950626-55950645 None:intergenic 20.0%
!! CCATGAAATTTCAAAATTTA+AGG - Chr3:55950316-55950335 MsG0380014517.01.T01:CDS 20.0%
!! GAAAAGAATATACTATATCA+AGG - Chr3:55951157-55951176 MsG0380014517.01.T01:intron 20.0%
!! TCATTAATATTGGACAAAAT+TGG + Chr3:55951005-55951024 None:intergenic 20.0%
!! TTACTGACAACTAAAAATAA+AGG + Chr3:55950595-55950614 None:intergenic 20.0%
!! TTCATTCACTTTCTAAATAT+GGG - Chr3:55949727-55949746 MsG0380014517.01.T01:CDS 20.0%
!! TTTCATTCACTTTCTAAATA+TGG - Chr3:55949726-55949745 MsG0380014517.01.T01:CDS 20.0%
!!! ACAATTTTTTTTTTACAGAG+AGG + Chr3:55950246-55950265 None:intergenic 20.0%
!!! ATTATTTGTGGTATGTTTTT+TGG + Chr3:55951342-55951361 None:intergenic 20.0%
!!! ATTTGCTACTTATATTCATT+AGG - Chr3:55951443-55951462 MsG0380014517.01.T01:intron 20.0%
!!! ATTTTAGTAAGGTATATAGT+CGG - Chr3:55950036-55950055 MsG0380014517.01.T01:CDS 20.0%
!!! CCTTAAATTTTGAAATTTCA+TGG + Chr3:55950319-55950338 None:intergenic 20.0%
!!! TTTGCTACTTATATTCATTA+GGG - Chr3:55951444-55951463 MsG0380014517.01.T01:intron 20.0%
! AATAATTGCAAATATACAGG+GGG + Chr3:55950217-55950236 None:intergenic 25.0%
! AGATCTTCAACTTCAAAAAA+TGG - Chr3:55949759-55949778 MsG0380014517.01.T01:CDS 25.0%
! AGATTATACTATGAAAAAGG+AGG - Chr3:55951236-55951255 MsG0380014517.01.T01:intron 25.0%
! ATAATGCATTGAAACCTAAT+TGG + Chr3:55951514-55951533 None:intergenic 25.0%
! ATGTATGTAGATGATTGATT+TGG + Chr3:55951380-55951399 None:intergenic 25.0%
! ATGTTTCCAAGAAAATGTAT+TGG - Chr3:55951648-55951667 MsG0380014517.01.T01:intron 25.0%
! ATTGTACAAAATCGATGAAA+TGG + Chr3:55950386-55950405 None:intergenic 25.0%
! CAAAGAATCTTCAAATTACA+GGG + Chr3:55950280-55950299 None:intergenic 25.0%
! CAATAATTGCAAATATACAG+GGG + Chr3:55950218-55950237 None:intergenic 25.0%
! CCAAAATTTACTCAAATTAC+AGG + Chr3:55950352-55950371 None:intergenic 25.0%
! CCAATAATTGCAAATATACA+GGG + Chr3:55950219-55950238 None:intergenic 25.0%
! GAATGGTATAAAGAAAGAAA+TGG - Chr3:55951853-55951872 MsG0380014517.01.T01:intron 25.0%
! GATCTTCAACTTCAAAAAAT+GGG - Chr3:55949760-55949779 MsG0380014517.01.T01:CDS 25.0%
! GATGAACGATATTAGAATTA+AGG + Chr3:55950539-55950558 None:intergenic 25.0%
! GGAAGATTATACTATGAAAA+AGG - Chr3:55951233-55951252 MsG0380014517.01.T01:intron 25.0%
! TAATGCATTGAAACCTAATT+GGG + Chr3:55951513-55951532 None:intergenic 25.0%
! TAATTGATCCATTCGTTATT+TGG + Chr3:55951127-55951146 None:intergenic 25.0%
! TCAAAGAATCTTCAAATTAC+AGG + Chr3:55950281-55950300 None:intergenic 25.0%
! TCCAATAATTGCAAATATAC+AGG + Chr3:55950220-55950239 None:intergenic 25.0%
! TGTACAATCAAAATTCATGA+AGG - Chr3:55950398-55950417 MsG0380014517.01.T01:intron 25.0%
!! ACTAAAGAGTTGATTATGAA+AGG + Chr3:55951569-55951588 None:intergenic 25.0%
!! CCTGTAATTTGAGTAAATTT+TGG - Chr3:55950349-55950368 MsG0380014517.01.T01:CDS 25.0%
!! TCTAATGCTATAAGTGTTTT+AGG - Chr3:55951992-55952011 MsG0380014517.01.T01:intron 25.0%
!!! GCAAAATTTTAAAAGTGTGA+TGG - Chr3:55951760-55951779 MsG0380014517.01.T01:intron 25.0%
AAAAAGGAGGAAAGAGTAAA+TGG - Chr3:55951249-55951268 MsG0380014517.01.T01:intron 30.0%
AAAATAGTGAGAGTTAAGAC+GGG + Chr3:55949684-55949703 None:intergenic 30.0%
AAATGGAAGATTATGAGATG+GGG - Chr3:55951870-55951889 MsG0380014517.01.T01:intron 30.0%
AAGAAAACCACAGCTAATAT+AGG + Chr3:55952031-55952050 None:intergenic 30.0%
ACAGCTAATATAGGAACAAT+AGG + Chr3:55952022-55952041 None:intergenic 30.0%
ACTAGTAAGAAACACTATCA+TGG - Chr3:55949990-55950009 MsG0380014517.01.T01:CDS 30.0%
AGAAACCGCTAATATTACAA+GGG - Chr3:55950497-55950516 MsG0380014517.01.T01:intron 30.0%
AGAAATGGAAGATTATGAGA+TGG - Chr3:55951868-55951887 MsG0380014517.01.T01:intron 30.0%
AGTGAATGAAATAACTTGAG+AGG + Chr3:55949717-55949736 None:intergenic 30.0%
ATAAGTGTAAAAGTAGAGAC+AGG + Chr3:55951482-55951501 None:intergenic 30.0%
ATACTGCGATAAATATTGGT+GGG - Chr3:55950855-55950874 MsG0380014517.01.T01:intron 30.0%
CAAGGAATCTACAAATTACT+GGG - Chr3:55950429-55950448 MsG0380014517.01.T01:intron 30.0%
CCCTGTATATTTGCAATTAT+TGG - Chr3:55950216-55950235 MsG0380014517.01.T01:CDS 30.0%
CTGACAACTAAAAATAAAGG+TGG + Chr3:55950592-55950611 None:intergenic 30.0%
GAAAATAGTGAGAGTTAAGA+CGG + Chr3:55949685-55949704 None:intergenic 30.0%
GAAATGGAAGATTATGAGAT+GGG - Chr3:55951869-55951888 MsG0380014517.01.T01:intron 30.0%
GGAAAAAATATACGATGAAC+TGG - Chr3:55949931-55949950 MsG0380014517.01.T01:CDS 30.0%
TAAGTGTAAAAGTAGAGACA+GGG + Chr3:55951481-55951500 None:intergenic 30.0%
TAATATCGTTCATCATGTTG+AGG - Chr3:55950545-55950564 MsG0380014517.01.T01:intron 30.0%
TATACTGCGATAAATATTGG+TGG - Chr3:55950854-55950873 MsG0380014517.01.T01:intron 30.0%
TATTGTTCCTATATTAGCTG+TGG - Chr3:55952021-55952040 MsG0380014517.01.T01:intron 30.0%
TCCAAGAAAATGTATTGGAT+TGG - Chr3:55951653-55951672 MsG0380014517.01.T01:intron 30.0%
TCTTTCAAGACAAAATGCAT+GGG - Chr3:55952047-55952066 MsG0380014517.01.T01:intron 30.0%
TTCTTTCAAGACAAAATGCA+TGG - Chr3:55952046-55952065 MsG0380014517.01.T01:intron 30.0%
TTGTAATATTAGCGGTTTCT+GGG + Chr3:55950497-55950516 None:intergenic 30.0%
TTTACCCCTTGTAATATTAG+CGG + Chr3:55950505-55950524 None:intergenic 30.0%
! ACATTCTTCAACTTTAGAAG+AGG - Chr3:55952186-55952205 MsG0380014517.01.T01:five_prime_UTR 30.0%
! ATTTGTAGATTCCTTGGTTT+TGG + Chr3:55950425-55950444 None:intergenic 30.0%
! CATTCTTCAACTTTAGAAGA+GGG - Chr3:55952187-55952206 MsG0380014517.01.T01:five_prime_UTR 30.0%
! CATTTTCTTGGAAACATTTG+TGG + Chr3:55951645-55951664 None:intergenic 30.0%
! TCCAATCCAATACATTTTCT+TGG + Chr3:55951657-55951676 None:intergenic 30.0%
! TGTTTTCTCTGGATTCTATT+GGG + Chr3:55949970-55949989 None:intergenic 30.0%
! TTGTGTTGGACTAATTTTTG+AGG - Chr3:55951955-55951974 MsG0380014517.01.T01:intron 30.0%
! TTGTTTTCTCTGGATTCTAT+TGG + Chr3:55949971-55949990 None:intergenic 30.0%
! TTTTCTTGTACTATTAGCGA+TGG - Chr3:55950160-55950179 MsG0380014517.01.T01:CDS 30.0%
!! TTCTTACTAGTTGTTTTCTC+TGG + Chr3:55949981-55950000 None:intergenic 30.0%
!!! GTTTTTTCGTCAAAAACAAG+TGG - Chr3:55950709-55950728 MsG0380014517.01.T01:CDS 30.0%
AACAGCTAGTACCATAGAAA+TGG + Chr3:55952080-55952099 None:intergenic 35.0%
AATTTGTATCCAACTGTGCT+CGG + Chr3:55950963-55950982 None:intergenic 35.0%
ACATGGCAAGTCTTTAGTAT+TGG - Chr3:55951932-55951951 MsG0380014517.01.T01:intron 35.0%
ACTAAAGACTTGCCATGTTA+TGG + Chr3:55951930-55951949 None:intergenic 35.0%
AGACAAAATGCATGGGATTA+AGG - Chr3:55952054-55952073 MsG0380014517.01.T01:intron 35.0%
AGCCAAAGAAACATTCTCAT+TGG - Chr3:55951082-55951101 MsG0380014517.01.T01:intron 35.0%
CAGAAACCGCTAATATTACA+AGG - Chr3:55950496-55950515 MsG0380014517.01.T01:intron 35.0%
CCAAGGAATCTACAAATTAC+TGG - Chr3:55950428-55950447 MsG0380014517.01.T01:intron 35.0%
CTCCAATGAGAATGTTTCTT+TGG + Chr3:55951087-55951106 None:intergenic 35.0%
CTTATTTGCTCATCCCAATT+AGG - Chr3:55951497-55951516 MsG0380014517.01.T01:intron 35.0%
CTTGAAAGCTAGTTGTGTAA+GGG + Chr3:55951726-55951745 None:intergenic 35.0%
CTTGTAATATTAGCGGTTTC+TGG + Chr3:55950498-55950517 None:intergenic 35.0%
CTTTCAAGAAGGTTGTGAAA+AGG - Chr3:55951738-55951757 MsG0380014517.01.T01:intron 35.0%
GAAACCGCTAATATTACAAG+GGG - Chr3:55950498-55950517 MsG0380014517.01.T01:intron 35.0%
GCTACTTGTATTACTCTAGT+AGG - Chr3:55951809-55951828 MsG0380014517.01.T01:intron 35.0%
GGAAACATTTGTGGAATTTG+AGG + Chr3:55951636-55951655 None:intergenic 35.0%
GGTTGTCGTTAATCATGTTT+AGG - Chr3:55950566-55950585 MsG0380014517.01.T01:intron 35.0%
TCTTGAAAGCTAGTTGTGTA+AGG + Chr3:55951727-55951746 None:intergenic 35.0%
TGACTTTCATAGCCATAACA+TGG - Chr3:55951915-55951934 MsG0380014517.01.T01:intron 35.0%
TTCTATGGTACTAGCTGTTT+GGG - Chr3:55952081-55952100 MsG0380014517.01.T01:intron 35.0%
TTTCCAGACCAAATAACGAA+TGG - Chr3:55951116-55951135 MsG0380014517.01.T01:intron 35.0%
TTTCTATGGTACTAGCTGTT+TGG - Chr3:55952080-55952099 MsG0380014517.01.T01:intron 35.0%
! AGAATGTTTCTTTGGCTTCA+TGG + Chr3:55951079-55951098 None:intergenic 35.0%
! CCAGTAATTTGTAGATTCCT+TGG + Chr3:55950431-55950450 None:intergenic 35.0%
! GAAGAATGTTTGCTAATGTG+AGG + Chr3:55952175-55952194 None:intergenic 35.0%
!! GTCTTTAGTATTGGTTGTGT+TGG - Chr3:55951941-55951960 MsG0380014517.01.T01:intron 35.0%
!! TACACAACTAGCTTTCAAGA+AGG - Chr3:55951727-55951746 MsG0380014517.01.T01:intron 35.0%
AAGCTAGTTGTGTAAGGGAA+AGG + Chr3:55951721-55951740 None:intergenic 40.0%
AGGAGGAAAGAGTAAATGGA+TGG - Chr3:55951253-55951272 MsG0380014517.01.T01:intron 40.0%
ATACATGTAGACACACGTGA+GGG + Chr3:55950788-55950807 None:intergenic 40.0%
CTTGAGTGAATTGAGGAAGT+AGG + Chr3:55951540-55951559 None:intergenic 40.0%
GAAACCAGCTAGTTGAACAA+CGG + Chr3:55951282-55951301 None:intergenic 40.0%
GATCCATTCGTTATTTGGTC+TGG + Chr3:55951122-55951141 None:intergenic 40.0%
GGGAGGAAGAAATTGTTAGA+AGG + Chr3:55951592-55951611 None:intergenic 40.0%
GTATATAGTCGGTGAATGAG+TGG - Chr3:55950047-55950066 MsG0380014517.01.T01:CDS 40.0%
GTGTGAACTTGAGTGAATTG+AGG + Chr3:55951547-55951566 None:intergenic 40.0%
TCTATGGTACTAGCTGTTTG+GGG - Chr3:55952082-55952101 MsG0380014517.01.T01:intron 40.0%
TGGAATTTGAGGACTCACTT+TGG + Chr3:55951625-55951644 None:intergenic 40.0%
TGGCTATGAAAGTCAGATCA+AGG + Chr3:55951910-55951929 None:intergenic 40.0%
TGGGATTAAGGCCATTTCTA+TGG - Chr3:55952066-55952085 MsG0380014517.01.T01:intron 40.0%
TTCATGAAGGTCCAAAACCA+AGG - Chr3:55950411-55950430 MsG0380014517.01.T01:intron 40.0%
! CTAGTAGGACTTTTTGCAAG+TGG - Chr3:55951824-55951843 MsG0380014517.01.T01:intron 40.0%
! GCTTTTGTCTATGTCTCACT+TGG - Chr3:55951404-55951423 MsG0380014517.01.T01:intron 40.0%
! TCTTCAACTTTAGAAGAGGG+TGG - Chr3:55952190-55952209 MsG0380014517.01.T01:five_prime_UTR 40.0%
!! GTGAGGAGTGTTTCTTGTTT+CGG + Chr3:55952158-55952177 None:intergenic 40.0%
!! TCTTCCTAAAAGTGTTGCAG+CGG + Chr3:55951219-55951238 None:intergenic 40.0%
CATACATGTAGACACACGTG+AGG + Chr3:55950789-55950808 None:intergenic 45.0%
GCACTTTAGTTGCATCTGCA+GGG - Chr3:55951684-55951703 MsG0380014517.01.T01:intron 45.0%
TATGCAGCACTTGTCTTAGC+AGG - Chr3:55951188-55951207 MsG0380014517.01.T01:intron 45.0%
TCGGTGAATGAGTGGTAGAA+AGG - Chr3:55950055-55950074 MsG0380014517.01.T01:CDS 45.0%
TGCACTTTAGTTGCATCTGC+AGG - Chr3:55951683-55951702 MsG0380014517.01.T01:intron 45.0%
TTAGTTGCATCTGCAGGGTA+TGG - Chr3:55951689-55951708 MsG0380014517.01.T01:intron 45.0%
TTTGCAAGTGGAGAGTGGAA+TGG - Chr3:55951836-55951855 MsG0380014517.01.T01:intron 45.0%
! CAATCCGCTGCAACACTTTT+AGG - Chr3:55951212-55951231 MsG0380014517.01.T01:intron 45.0%
! GACTTTTTGCAAGTGGAGAG+TGG - Chr3:55951831-55951850 MsG0380014517.01.T01:intron 45.0%
!! ACTCACTTTGGAACACAAGG+AGG + Chr3:55951613-55951632 None:intergenic 45.0%
!! AGGACTCACTTTGGAACACA+AGG + Chr3:55951616-55951635 None:intergenic 45.0%
!! CTAAAAGTGTTGCAGCGGAT+TGG + Chr3:55951214-55951233 None:intergenic 45.0%
!! CTCACTTTGGAACACAAGGA+GGG + Chr3:55951612-55951631 None:intergenic 45.0%
!! GTTAAGACGGGAGAAGTGTT+TGG + Chr3:55949672-55949691 None:intergenic 45.0%
GCAACCGTTGTTCAACTAGC+TGG - Chr3:55951275-55951294 MsG0380014517.01.T01:intron 50.0%
! AGCGGTTTCTGGGTTATCCA+CGG + Chr3:55950487-55950506 None:intergenic 50.0%
!! ACTTTGGAACACAAGGAGGG+AGG + Chr3:55951609-55951628 None:intergenic 50.0%
ATGCAAAGGCCGAGCACAGT+TGG - Chr3:55950951-55950970 MsG0380014517.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 55949658 55952216 55949658 ID=MsG0380014517.01;Name=MsG0380014517.01
Chr3 mRNA 55949658 55952216 55949658 ID=MsG0380014517.01.T01;Parent=MsG0380014517.01;Name=MsG0380014517.01.T01;_AED=0.32;_eAED=0.32;_QI=87|0.5|0.33|1|0.5|0.66|3|0|337
Chr3 exon 55949658 55950409 55949658 ID=MsG0380014517.01.T01:exon:28818;Parent=MsG0380014517.01.T01
Chr3 exon 55950578 55950802 55950578 ID=MsG0380014517.01.T01:exon:28817;Parent=MsG0380014517.01.T01
Chr3 exon 55952093 55952216 55952093 ID=MsG0380014517.01.T01:exon:28816;Parent=MsG0380014517.01.T01
Chr3 five_prime_UTR 55952130 55952216 55952130 ID=MsG0380014517.01.T01:five_prime_utr;Parent=MsG0380014517.01.T01
Chr3 CDS 55952093 55952129 55952093 ID=MsG0380014517.01.T01:cds;Parent=MsG0380014517.01.T01
Chr3 CDS 55950578 55950802 55950578 ID=MsG0380014517.01.T01:cds;Parent=MsG0380014517.01.T01
Chr3 CDS 55949658 55950409 55949658 ID=MsG0380014517.01.T01:cds;Parent=MsG0380014517.01.T01
Gene Sequence

>MsG0380014517.01.T01

ATGGGAGAAGCTCAAGATCTTCAACTTCAAAAAATGGAAGTCCATGAAGCCAAAGAAACATTCTCATTGGAGCAAAATAGCTTTCCAGACCAAATAACGAATGGATCAATTATGACCAATAAGAAAAGAATATACTATATCAAGGTAGCAATTTATGCAGCACTTGTCTTAGCAGGCCAATCCGCTGCAACACTTTTAGGAAGATTATACTATGAAAAAGGAGGAAAGAGTAAATGGATGGCAACCGTTGTTCAACTAGCTGGGCTAATGTATCTCCCTGTCTCTACTTTTACACTTATTTGCTCATCCCAATTAGGTTTCAATGCATTATTTTCCTACTTCCTCAATTCACTCAAGTTCACACCTTTCATAATCAACTCTTTAGTCCTTCTAACAATTTCTTCCTCCCTCCTTGTGTTCCAAAGTGAGTCCTCAAATTCCACAAATGTTTCCAAGAAAATGTATTGGATTGGATTCATATGCACTTTAGTTGCATCTGCAGGGTATGGATTGATCCTTTCCCTTACACAACTAGCTTTCAAGAAGGTTGTGAAAAGGCAAAATTTTAAAAGTGTGATGGACATGATAATATATACACAATTGGTAGCTACTTGTATTACTCTAGTAGGACTTTTTGCAAGTGGAGAGTGGAATGGTATAAAGAAAGAAATGGAAGATTATGAGATGGGGAAAGCTTCTTATGTCCTTGATCTGACTTTCATAGCCATAACATGGCAAGTCTTTAGTATTGGTTGTGTTGGACTAATTTTTGAGGTTTCTTCGCTATTCTCTAATGCTATAAGTGTTTTAGGTTTGCCTATTGTTCCTATATTAGCTGTGGTTTTCTTTCAAGACAAAATGCATGGGATTAAGGCCATTTCTATGGTACTAGCTGTTTGGGGCTTCATATCATATGTGTATCAACAATATTTGGATGAGAATGACATCATAACCGAAACAAGAAACACTCCTCACATTAGCAAACATTCTTCAACTTTAGAAGAGGGTGGCTGA

Protein sequence

>MsG0380014517.01.T01

MGEAQDLQLQKMEVHEAKETFSLEQNSFPDQITNGSIMTNKKRIYYIKVAIYAALVLAGQSAATLLGRLYYEKGGKSKWMATVVQLAGLMYLPVSTFTLICSSQLGFNALFSYFLNSLKFTPFIINSLVLLTISSSLLVFQSESSNSTNVSKKMYWIGFICTLVASAGYGLILSLTQLAFKKVVKRQNFKSVMDMIIYTQLVATCITLVGLFASGEWNGIKKEMEDYEMGKASYVLDLTFIAITWQVFSIGCVGLIFEVSSLFSNAISVLGLPIVPILAVVFFQDKMHGIKAISMVLAVWGFISYVYQQYLDENDIITETRNTPHISKHSSTLEEGG*