AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017391.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017391.01.T01 MTR_3g106550 88.406 138 16 0 32 169 145 282 1.12e-85 260
MsG0380017391.01.T01 MTR_3g106550 88.406 138 16 0 32 169 145 282 2.46e-84 258
MsG0380017391.01.T01 MTR_3g106550 84.706 85 10 1 155 236 371 455 6.90e-41 145
MsG0380017391.01.T01 MTR_1g012850 58.235 170 65 2 32 197 150 317 3.82e-58 191
MsG0380017391.01.T01 MTR_1g012850 62.353 85 29 1 155 236 380 464 1.69e-28 112
MsG0380017391.01.T01 MTR_4g116190 53.571 168 74 2 32 197 165 330 1.26e-53 179
MsG0380017391.01.T01 MTR_4g116190 33.333 174 85 10 62 226 313 464 2.42e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017391.01.T01 AT4G32060 55.882 170 69 2 32 197 188 355 4.58e-56 185
MsG0380017391.01.T01 AT4G32060 55.882 170 69 2 32 197 188 355 1.55e-55 185
MsG0380017391.01.T01 AT4G32060 50.746 67 29 1 166 228 432 498 4.11e-16 77.4

Find 50 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAACAGGTATTTATTCT+TGG 0.261814 3:+95750102 MsG0380017391.01.T01:intron
ACGGATGCTTCTGTAGAAAA+TGG 0.331087 3:+95750497 MsG0380017391.01.T01:CDS
CCGTCTGTTGTTCATTCCTT+CGG 0.364459 3:-95750478 None:intergenic
CAGGAGAACAACTGTGAACC+TGG 0.388553 3:-95751369 None:intergenic
TCACAAATTTATCATGTTTG+AGG 0.403030 3:-95750562 None:intergenic
GGATTCAGATGAGGGAAAAC+TGG 0.406869 3:-95749839 None:intergenic
TCTCTCGAGTGAATCACATT+TGG 0.424154 3:-95748783 None:intergenic
AATTAAGTTTGTTTGAATCA+AGG 0.431479 3:+95748819 MsG0380017391.01.T01:CDS
GAATACTTATTTGATAAAGA+TGG 0.448774 3:+95750530 MsG0380017391.01.T01:CDS
CCCCACTTGTGTCAAACAAA+TGG 0.450750 3:-95751221 None:intergenic
ATCTGTGGAGACAGGAATCA+TGG 0.451532 3:+95751308 MsG0380017391.01.T01:CDS
TTTGTTCTGTTTCAGGTTTG+TGG 0.455519 3:+95751162 MsG0380017391.01.T01:intron
TGGGTTTCTTGTCATGCTGT+TGG 0.466145 3:+95751328 MsG0380017391.01.T01:CDS
TTGTTTGACACAAGTGGGGA+TGG 0.495343 3:+95751225 MsG0380017391.01.T01:CDS
TTGGAAGGCGAAAGATGTCC+TGG 0.502851 3:+95749883 MsG0380017391.01.T01:CDS
TCCATTTGTTTGACACAAGT+GGG 0.507708 3:+95751220 MsG0380017391.01.T01:CDS
ATGTTTGACATGGATAATGA+TGG 0.509533 3:+95750172 MsG0380017391.01.T01:CDS
CCTTGTTAGAGATGGATCCT+TGG 0.513653 3:+95749864 MsG0380017391.01.T01:CDS
AACTGTACAGACACTTCCCC+AGG 0.517317 3:+95751351 MsG0380017391.01.T01:CDS
AGGACATCTTTCGCCTTCCA+AGG 0.518011 3:-95749881 None:intergenic
TTCCATTTGTTTGACACAAG+TGG 0.521772 3:+95751219 MsG0380017391.01.T01:CDS
TTATTTGATAAAGATGGAAA+AGG 0.526009 3:+95750536 MsG0380017391.01.T01:CDS
GGATCCATCTCTAACAAGGT+TGG 0.529594 3:-95749860 None:intergenic
CAGAGGCGTGAGAGAGATGT+TGG 0.533380 3:+95751282 MsG0380017391.01.T01:CDS
TAAAGAAGAATTCAAAAGAG+TGG 0.533414 3:+95750418 MsG0380017391.01.T01:CDS
GTTGGTCGATCTGTGGAGAC+AGG 0.535847 3:+95751300 MsG0380017391.01.T01:CDS
CATCGATGCGATCTCATAGC+AGG 0.536752 3:+95750444 MsG0380017391.01.T01:CDS
GAATCCAACCTTGTTAGAGA+TGG 0.562769 3:+95749856 MsG0380017391.01.T01:CDS
GTTAGAGATGGATCCTTGGA+AGG 0.569962 3:+95749868 MsG0380017391.01.T01:CDS
CCAAGGATCCATCTCTAACA+AGG 0.571002 3:-95749864 None:intergenic
ACAAGGTTGGATTCAGATGA+GGG 0.573425 3:-95749847 None:intergenic
GGAGGACAGAACAAGTGGCC+AGG 0.576153 3:-95749901 None:intergenic
AGGAGAACAACTGTGAACCT+GGG 0.585188 3:-95751368 None:intergenic
AACAAGGTTGGATTCAGATG+AGG 0.585378 3:-95749848 None:intergenic
TGTAGAAAATGGAAGGATGG+TGG 0.598795 3:+95750508 MsG0380017391.01.T01:CDS
CCATTTGTTTGACACAAGTG+GGG 0.606405 3:+95751221 MsG0380017391.01.T01:CDS
ATGCTTCTGTAGAAAATGGA+AGG 0.608092 3:+95750501 MsG0380017391.01.T01:CDS
GCAGGCATGGTGTTCACCGA+AGG 0.611160 3:+95750462 MsG0380017391.01.T01:CDS
AGTATTTAAAATGTTTGACA+TGG 0.614530 3:+95750162 MsG0380017391.01.T01:CDS
ATGCGATCTCATAGCAGGCA+TGG 0.618266 3:+95750449 MsG0380017391.01.T01:CDS
CCGAAGGAATGAACAACAGA+CGG 0.621037 3:+95750478 MsG0380017391.01.T01:CDS
TCTGTGGAGACAGGAATCAT+GGG 0.628164 3:+95751309 MsG0380017391.01.T01:CDS
CTGAAGGAGGACAGAACAAG+TGG 0.631233 3:-95749906 None:intergenic
TTCTGTAGAAAATGGAAGGA+TGG 0.638791 3:+95750505 MsG0380017391.01.T01:CDS
AGAAGAATTCAAAAGAGTGG+TGG 0.641047 3:+95750421 MsG0380017391.01.T01:CDS
GAGAGATGTTGGTCGATCTG+TGG 0.651163 3:+95751293 MsG0380017391.01.T01:CDS
TGTTTGACATGGATAATGAT+GGG 0.657873 3:+95750173 MsG0380017391.01.T01:CDS
GGAGAACAACTGTGAACCTG+GGG 0.661112 3:-95751367 None:intergenic
AGTTTGTTAGAGTGCTACAG+AGG 0.667536 3:+95751265 MsG0380017391.01.T01:CDS
TTTATCTCTTTCTAACAACG+TGG 0.689749 3:+95751185 MsG0380017391.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAACAAAAAATTGATTATT+TGG - Chr3:95749598-95749617 None:intergenic 15.0%
!! TTTATAAAACATGAAGAAAT+CGG - Chr3:95751055-95751074 None:intergenic 15.0%
!!! TAACATAATTTTAGCATTAT+TGG + Chr3:95749529-95749548 MsG0380017391.01.T01:intron 15.0%
!! AGACATGGTAATAATAATAA+TGG - Chr3:95749225-95749244 None:intergenic 20.0%
!! GAATACTTATTTGATAAAGA+TGG + Chr3:95750530-95750549 MsG0380017391.01.T01:CDS 20.0%
!! TGATGCTAAATATTCAAATA+AGG - Chr3:95750217-95750236 None:intergenic 20.0%
!! TTATTTGATAAAGATGGAAA+AGG + Chr3:95750536-95750555 MsG0380017391.01.T01:CDS 20.0%
!! TTTGAATATTTAGCATCAAT+TGG + Chr3:95750219-95750238 MsG0380017391.01.T01:intron 20.0%
!!! AAAAGCATAAAAAATTCTGA+AGG - Chr3:95749925-95749944 None:intergenic 20.0%
!!! AATTAAGTTTGTTTGAATCA+AGG + Chr3:95748819-95748838 MsG0380017391.01.T01:CDS 20.0%
!!! AGTATTTAAAATGTTTGACA+TGG + Chr3:95750162-95750181 MsG0380017391.01.T01:CDS 20.0%
!!! TCTGGATTTTCTATTATTAT+GGG + Chr3:95749989-95750008 MsG0380017391.01.T01:intron 20.0%
!!! TGTGTCTAAAATCTTAATAA+TGG + Chr3:95750069-95750088 MsG0380017391.01.T01:intron 20.0%
!!! TTCCAATAATAACTTACTTT+TGG + Chr3:95749486-95749505 MsG0380017391.01.T01:intron 20.0%
!!! TTTATGCTTTTTGATGTAAA+CGG + Chr3:95749934-95749953 MsG0380017391.01.T01:CDS 20.0%
! AAAATTAGTACCACTATCAT+TGG + Chr3:95750946-95750965 MsG0380017391.01.T01:intron 25.0%
! AATTATGTTTGTTCTGTTTC+AGG + Chr3:95751155-95751174 MsG0380017391.01.T01:intron 25.0%
! ATTCTCTCAAAATCTCAAAT+TGG + Chr3:95750353-95750372 MsG0380017391.01.T01:intron 25.0%
! CTCCAAAAGTAAGTTATTAT+TGG - Chr3:95749491-95749510 None:intergenic 25.0%
! CTGAATATGAGTTTACATTT+AGG + Chr3:95749737-95749756 MsG0380017391.01.T01:intron 25.0%
! GAAAATCATCTCTTGTTAAA+AGG - Chr3:95751000-95751019 None:intergenic 25.0%
! GGTAATAATAATAATGGCAA+TGG - Chr3:95749219-95749238 None:intergenic 25.0%
! TAAAGAAGAATTCAAAAGAG+TGG + Chr3:95750418-95750437 MsG0380017391.01.T01:CDS 25.0%
! TCACAAATTTATCATGTTTG+AGG - Chr3:95750565-95750584 None:intergenic 25.0%
! TGAAGATTTATTTGATCTCA+GGG + Chr3:95750019-95750038 MsG0380017391.01.T01:intron 25.0%
!! CAGAAAAAACTTGTTTATCA+CGG + Chr3:95748907-95748926 MsG0380017391.01.T01:intron 25.0%
!! GAAAGATGTTTTCTTTTGTT+TGG - Chr3:95749146-95749165 None:intergenic 25.0%
!! GTCTGGATTTTCTATTATTA+TGG + Chr3:95749988-95750007 MsG0380017391.01.T01:intron 25.0%
!! TTCAGTTTTGCAAAAGTAAA+TGG + Chr3:95750974-95750993 MsG0380017391.01.T01:intron 25.0%
!!! CAATAATAACTTACTTTTGG+AGG + Chr3:95749489-95749508 MsG0380017391.01.T01:intron 25.0%
AATAATAATGGCAATGGCAA+TGG - Chr3:95749213-95749232 None:intergenic 30.0%
AATGTAAGTCACACTAAAAG+TGG + Chr3:95749057-95749076 MsG0380017391.01.T01:intron 30.0%
AATTAGTTGAGTCCATCTTT+AGG + Chr3:95750387-95750406 MsG0380017391.01.T01:intron 30.0%
AGAAAATCATCTCTTCTTGA+GGG + Chr3:95749463-95749482 MsG0380017391.01.T01:intron 30.0%
ATGTTTGACATGGATAATGA+TGG + Chr3:95750172-95750191 MsG0380017391.01.T01:CDS 30.0%
ATTAGTTGAGTCCATCTTTA+GGG + Chr3:95750388-95750407 MsG0380017391.01.T01:intron 30.0%
GAATAAAAAAACACCTTCTC+AGG - Chr3:95749682-95749701 None:intergenic 30.0%
GTCAACGAAGTCATATATTT+AGG - Chr3:95750656-95750675 None:intergenic 30.0%
GTGAAGATTTATTTGATCTC+AGG + Chr3:95750018-95750037 MsG0380017391.01.T01:intron 30.0%
TAGAAAATCATCTCTTCTTG+AGG + Chr3:95749462-95749481 MsG0380017391.01.T01:intron 30.0%
TCAAAAAACCATATCAGCTA+CGG + Chr3:95750778-95750797 MsG0380017391.01.T01:intron 30.0%
TGTTTGACATGGATAATGAT+GGG + Chr3:95750173-95750192 MsG0380017391.01.T01:CDS 30.0%
TTATCACGGCTAGAAAAAAA+GGG + Chr3:95748921-95748940 MsG0380017391.01.T01:intron 30.0%
TTTATCACGGCTAGAAAAAA+AGG + Chr3:95748920-95748939 MsG0380017391.01.T01:intron 30.0%
TTTATCTATCTCCCTAAAGA+TGG - Chr3:95750402-95750421 None:intergenic 30.0%
TTTATCTCTTTCTAACAACG+TGG + Chr3:95751185-95751204 MsG0380017391.01.T01:CDS 30.0%
! AGCATAAAAAATTCTGAAGG+AGG - Chr3:95749922-95749941 None:intergenic 30.0%
! CATGTTACCAATTTTCAACT+AGG + Chr3:95748876-95748895 MsG0380017391.01.T01:intron 30.0%
! GATTATCTGTGTAGATTTTG+AGG + Chr3:95750726-95750745 MsG0380017391.01.T01:intron 30.0%
! TCAAAATTTTTGCAGAACTG+AGG + Chr3:95750921-95750940 MsG0380017391.01.T01:intron 30.0%
! TTTTGTGCCTAGTTGAAAAT+TGG - Chr3:95748886-95748905 None:intergenic 30.0%
!!! CGTGATAAACAAGTTTTTTC+TGG - Chr3:95748909-95748928 None:intergenic 30.0%
AAAACTGTGAAGACGAAGTT+TGG - Chr3:95749292-95749311 None:intergenic 35.0%
ACAATTTGTCGATCGTTCTT+AGG - Chr3:95750318-95750337 None:intergenic 35.0%
ACTGCAGAAAAACTTGATTC+TGG - Chr3:95750145-95750164 None:intergenic 35.0%
AGAAGAATTCAAAAGAGTGG+TGG + Chr3:95750421-95750440 MsG0380017391.01.T01:CDS 35.0%
ATCTGAGCAAGTTACTAGAA+AGG + Chr3:95750840-95750859 MsG0380017391.01.T01:intron 35.0%
ATGCTTCTGTAGAAAATGGA+AGG + Chr3:95750501-95750520 MsG0380017391.01.T01:CDS 35.0%
ATTTATTTGATCTCAGGGCA+AGG + Chr3:95750024-95750043 MsG0380017391.01.T01:intron 35.0%
CACAATATCCAAAGTGGTTT+CGG + Chr3:95749354-95749373 MsG0380017391.01.T01:intron 35.0%
CTGCAACAGGTATTTATTCT+TGG + Chr3:95750102-95750121 MsG0380017391.01.T01:intron 35.0%
CTGCAGAAAAACTTGATTCT+GGG - Chr3:95750144-95750163 None:intergenic 35.0%
GAAGAAAACCTTACTTCTGT+AGG - Chr3:95749626-95749645 None:intergenic 35.0%
GAGAGTAGAAAAGAAAGACA+TGG - Chr3:95749240-95749259 None:intergenic 35.0%
TAAAAAAACACCTTCTCAGG+TGG - Chr3:95749679-95749698 None:intergenic 35.0%
TACAGATTCCTACAGAAGTA+AGG + Chr3:95749615-95749634 MsG0380017391.01.T01:intron 35.0%
TCCATTTGTTTGACACAAGT+GGG + Chr3:95751220-95751239 MsG0380017391.01.T01:CDS 35.0%
TCTGAGCAAGTTACTAGAAA+GGG + Chr3:95750841-95750860 MsG0380017391.01.T01:intron 35.0%
TGATGTACGCATTACATTTG+AGG + Chr3:95750895-95750914 MsG0380017391.01.T01:intron 35.0%
TTCCATTTGTTTGACACAAG+TGG + Chr3:95751219-95751238 MsG0380017391.01.T01:CDS 35.0%
TTCTGTAGAAAATGGAAGGA+TGG + Chr3:95750505-95750524 MsG0380017391.01.T01:CDS 35.0%
TTGGAAACGTTGAATGAAGA+AGG - Chr3:95749273-95749292 None:intergenic 35.0%
! CTTTTTGATGTAAACGGTGA+CGG + Chr3:95749940-95749959 MsG0380017391.01.T01:CDS 35.0%
! TGGTGTAATTTTACTGCAAC+AGG + Chr3:95750089-95750108 MsG0380017391.01.T01:intron 35.0%
! TTTAGGCACTGTCAACTTAT+AGG - Chr3:95750639-95750658 None:intergenic 35.0%
!! CTTTTAAAGAGTGAGTTGTC+TGG + Chr3:95749971-95749990 MsG0380017391.01.T01:intron 35.0%
!! TTTGTTCTGTTTCAGGTTTG+TGG + Chr3:95751162-95751181 MsG0380017391.01.T01:intron 35.0%
!! TTTTAGCTATGAAGCACAAC+TGG + Chr3:95750261-95750280 MsG0380017391.01.T01:intron 35.0%
!!! CTGCTACTTTTTTTACCTCA+TGG + Chr3:95749703-95749722 MsG0380017391.01.T01:intron 35.0%
!!! TCTTTTGCAAAGCATCGTTA+AGG - Chr3:95749111-95749130 None:intergenic 35.0%
AACAAGGTTGGATTCAGATG+AGG - Chr3:95749851-95749870 None:intergenic 40.0%
AACCACTTTGGATATTGTGG+TGG - Chr3:95749353-95749372 None:intergenic 40.0%
AAGGGGAAGTTCTTATGAAC+CGG + Chr3:95749793-95749812 MsG0380017391.01.T01:intron 40.0%
ACAAGGTTGGATTCAGATGA+GGG - Chr3:95749850-95749869 None:intergenic 40.0%
ACGGATGCTTCTGTAGAAAA+TGG + Chr3:95750497-95750516 MsG0380017391.01.T01:CDS 40.0%
AGTAGAGTCGAAGTGTGAAT+TGG - Chr3:95749425-95749444 None:intergenic 40.0%
ATCAAAAGTGACGTTAGCAG+AGG + Chr3:95748964-95748983 MsG0380017391.01.T01:intron 40.0%
ATGCGTACATCATTGAACTG+TGG - Chr3:95750887-95750906 None:intergenic 40.0%
ATGGCATGCTTTAGTGTCAA+AGG - Chr3:95749188-95749207 None:intergenic 40.0%
CCATTTGTTTGACACAAGTG+GGG + Chr3:95751221-95751240 MsG0380017391.01.T01:CDS 40.0%
CGAAACCACTTTGGATATTG+TGG - Chr3:95749356-95749375 None:intergenic 40.0%
CTGAATAGAGCCAATGATAG+TGG - Chr3:95750959-95750978 None:intergenic 40.0%
GAAACGTTGAATGAAGAAGG+AGG - Chr3:95749270-95749289 None:intergenic 40.0%
GAATCCAACCTTGTTAGAGA+TGG + Chr3:95749856-95749875 MsG0380017391.01.T01:CDS 40.0%
GCACAACTGGCATATACAAT+TGG + Chr3:95750274-95750293 MsG0380017391.01.T01:intron 40.0%
TCAAAAGTGACGTTAGCAGA+GGG + Chr3:95748965-95748984 MsG0380017391.01.T01:intron 40.0%
TCTCTCGAGTGAATCACATT+TGG - Chr3:95748786-95748805 None:intergenic 40.0%
TGCAAAATCCGTAGCTGATA+TGG - Chr3:95750789-95750808 None:intergenic 40.0%
TGTAGAAAATGGAAGGATGG+TGG + Chr3:95750508-95750527 MsG0380017391.01.T01:CDS 40.0%
TTCATAAGAACTTCCCCTTC+CGG - Chr3:95749792-95749811 None:intergenic 40.0%
! AAGCATCGTTAAGGTGACAA+GGG - Chr3:95749102-95749121 None:intergenic 40.0%
! TCAACTATGAGAAGCGCATA+CGG + Chr3:95749644-95749663 MsG0380017391.01.T01:intron 40.0%
!! AAAGCATCGTTAAGGTGACA+AGG - Chr3:95749103-95749122 None:intergenic 40.0%
!! AGTTTGTTAGAGTGCTACAG+AGG + Chr3:95751265-95751284 MsG0380017391.01.T01:CDS 40.0%
!!! ATCTGTGTAGATTTTGAGGC+TGG + Chr3:95750730-95750749 MsG0380017391.01.T01:intron 40.0%
AACAAAGGCCGAAACCACTT+TGG - Chr3:95749365-95749384 None:intergenic 45.0%
AAGAGCAGAGCCAACAACAA+AGG - Chr3:95749380-95749399 None:intergenic 45.0%
AATGGCAATGGCAATGGCAA+TGG - Chr3:95749207-95749226 None:intergenic 45.0%
ACTGCTCGCATTAAATCTGC+CGG - Chr3:95749815-95749834 None:intergenic 45.0%
AGAGTCGAAGTGTGAATTGG+TGG - Chr3:95749422-95749441 None:intergenic 45.0%
AGGAGAACAACTGTGAACCT+GGG - Chr3:95751371-95751390 None:intergenic 45.0%
ATAGTTGCTTCTGCAGACGT+GGG + Chr3:95750815-95750834 MsG0380017391.01.T01:intron 45.0%
ATCTGTGGAGACAGGAATCA+TGG + Chr3:95751308-95751327 MsG0380017391.01.T01:CDS 45.0%
CCAAGGATCCATCTCTAACA+AGG - Chr3:95749867-95749886 None:intergenic 45.0%
CCCCACTTGTGTCAAACAAA+TGG - Chr3:95751224-95751243 None:intergenic 45.0%
CCGAAGGAATGAACAACAGA+CGG + Chr3:95750478-95750497 MsG0380017391.01.T01:CDS 45.0%
CCGTCTGTTGTTCATTCCTT+CGG - Chr3:95750481-95750500 None:intergenic 45.0%
CCTTGTTAGAGATGGATCCT+TGG + Chr3:95749864-95749883 MsG0380017391.01.T01:CDS 45.0%
CTTTGCATCATACCGTACAC+CGG + Chr3:95749770-95749789 MsG0380017391.01.T01:intron 45.0%
GAATGAAGAAGGAGGATCGA+CGG - Chr3:95749262-95749281 None:intergenic 45.0%
GGATCCATCTCTAACAAGGT+TGG - Chr3:95749863-95749882 None:intergenic 45.0%
GGATTCAGATGAGGGAAAAC+TGG - Chr3:95749842-95749861 None:intergenic 45.0%
GTTAGAGATGGATCCTTGGA+AGG + Chr3:95749868-95749887 MsG0380017391.01.T01:CDS 45.0%
TCAGAAACTCATGAGCCATG+AGG - Chr3:95749721-95749740 None:intergenic 45.0%
TCTGTGGAGACAGGAATCAT+GGG + Chr3:95751309-95751328 MsG0380017391.01.T01:CDS 45.0%
TGGGTTTCTTGTCATGCTGT+TGG + Chr3:95751328-95751347 MsG0380017391.01.T01:CDS 45.0%
TTGTTTGACACAAGTGGGGA+TGG + Chr3:95751225-95751244 MsG0380017391.01.T01:CDS 45.0%
! GACTTCGTTGACTAGATCAC+AGG + Chr3:95750664-95750683 MsG0380017391.01.T01:intron 45.0%
AACTGTACAGACACTTCCCC+AGG + Chr3:95751351-95751370 MsG0380017391.01.T01:CDS 50.0%
AGGACATCTTTCGCCTTCCA+AGG - Chr3:95749884-95749903 None:intergenic 50.0%
ATCATACCGTACACCGGAAG+GGG + Chr3:95749776-95749795 MsG0380017391.01.T01:intron 50.0%
ATGCGATCTCATAGCAGGCA+TGG + Chr3:95750449-95750468 MsG0380017391.01.T01:CDS 50.0%
CACGTCTGCAGAAGCAACTA+TGG - Chr3:95750816-95750835 None:intergenic 50.0%
CAGGAGAACAACTGTGAACC+TGG - Chr3:95751372-95751391 None:intergenic 50.0%
CATAGTTGCTTCTGCAGACG+TGG + Chr3:95750814-95750833 MsG0380017391.01.T01:intron 50.0%
CATCATACCGTACACCGGAA+GGG + Chr3:95749775-95749794 MsG0380017391.01.T01:intron 50.0%
CATCGATGCGATCTCATAGC+AGG + Chr3:95750444-95750463 MsG0380017391.01.T01:CDS 50.0%
CTGAAGGAGGACAGAACAAG+TGG - Chr3:95749909-95749928 None:intergenic 50.0%
GAGAGATGTTGGTCGATCTG+TGG + Chr3:95751293-95751312 MsG0380017391.01.T01:CDS 50.0%
GGAGAACAACTGTGAACCTG+GGG - Chr3:95751370-95751389 None:intergenic 50.0%
GGCCACCACAATATCCAAAG+TGG + Chr3:95749348-95749367 MsG0380017391.01.T01:intron 50.0%
GTCGAAGTGTGAATTGGTGG+AGG - Chr3:95749419-95749438 None:intergenic 50.0%
GTTGCATAGTCCACCTGAGA+AGG + Chr3:95749666-95749685 MsG0380017391.01.T01:intron 50.0%
TTGGAAGGCGAAAGATGTCC+TGG + Chr3:95749883-95749902 MsG0380017391.01.T01:CDS 50.0%
TTGGATATTGTGGTGGCCGT+GGG - Chr3:95749346-95749365 None:intergenic 50.0%
TTTGGATATTGTGGTGGCCG+TGG - Chr3:95749347-95749366 None:intergenic 50.0%
! GTGGTTTCGGCCTTTGTTGT+TGG + Chr3:95749367-95749386 MsG0380017391.01.T01:intron 50.0%
! TTGGTCTTCGGTAACGATGG+TGG - Chr3:95749323-95749342 None:intergenic 50.0%
ATATTGTGGTGGCCGTGGGT+TGG - Chr3:95749342-95749361 None:intergenic 55.0%
CGTTACCGAAGACCAACCCA+CGG + Chr3:95749327-95749346 MsG0380017391.01.T01:intron 55.0%
GAACTTCCCCTTCCGGTGTA+CGG - Chr3:95749785-95749804 None:intergenic 55.0%
GCATCATACCGTACACCGGA+AGG + Chr3:95749774-95749793 MsG0380017391.01.T01:intron 55.0%
GTTGGTCGATCTGTGGAGAC+AGG + Chr3:95751300-95751319 MsG0380017391.01.T01:CDS 55.0%
! CAGAGGCGTGAGAGAGATGT+TGG + Chr3:95751282-95751301 MsG0380017391.01.T01:CDS 55.0%
!! CTTCGGTAACGATGGTGGAG+AGG - Chr3:95749318-95749337 None:intergenic 55.0%
!! GGGTTGGTCTTCGGTAACGA+TGG - Chr3:95749326-95749345 None:intergenic 55.0%
GCAGGCATGGTGTTCACCGA+AGG + Chr3:95750462-95750481 MsG0380017391.01.T01:CDS 60.0%
GGAGGACAGAACAAGTGGCC+AGG - Chr3:95749904-95749923 None:intergenic 60.0%
!! GGTGGCCGTGGGTTGGTCTT+CGG - Chr3:95749335-95749354 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 95748773 95751392 95748773 ID=MsG0380017391.01;Name=MsG0380017391.01
Chr3 mRNA 95748773 95751392 95748773 ID=MsG0380017391.01.T01;Parent=MsG0380017391.01;Name=MsG0380017391.01.T01;_AED=0.49;_eAED=0.54;_QI=0|0|0|1|1|1|5|0|236
Chr3 exon 95748773 95748840 95748773 ID=MsG0380017391.01.T01:exon:1742;Parent=MsG0380017391.01.T01
Chr3 exon 95749819 95749980 95749819 ID=MsG0380017391.01.T01:exon:1743;Parent=MsG0380017391.01.T01
Chr3 exon 95750111 95750194 95750111 ID=MsG0380017391.01.T01:exon:1744;Parent=MsG0380017391.01.T01
Chr3 exon 95750409 95750589 95750409 ID=MsG0380017391.01.T01:exon:1745;Parent=MsG0380017391.01.T01
Chr3 exon 95751177 95751392 95751177 ID=MsG0380017391.01.T01:exon:1746;Parent=MsG0380017391.01.T01
Chr3 CDS 95748773 95748840 95748773 ID=MsG0380017391.01.T01:cds;Parent=MsG0380017391.01.T01
Chr3 CDS 95749819 95749980 95749819 ID=MsG0380017391.01.T01:cds;Parent=MsG0380017391.01.T01
Chr3 CDS 95750111 95750194 95750111 ID=MsG0380017391.01.T01:cds;Parent=MsG0380017391.01.T01
Chr3 CDS 95750409 95750589 95750409 ID=MsG0380017391.01.T01:cds;Parent=MsG0380017391.01.T01
Chr3 CDS 95751177 95751392 95751177 ID=MsG0380017391.01.T01:cds;Parent=MsG0380017391.01.T01
Gene Sequence

>MsG0380017391.01.T01

ATGAATGAAACCAAATGTGATTCACTCGAGAGAGCTGACTTGATTCAATTAAGTTTGTTTGAATCAAGATTTAATGCGAGCAGTTGTTCCAGTTTTCCCTCATCTGAATCCAACCTTGTTAGAGATGGATCCTTGGAAGGCGAAAGATGTCCTGGCCACTTGTTCTGTCCTCCTTCAGAATTTTTTATGCTTTTTGATGTAAACGGTGACGGTCTTGTATCTTTTAAAGAGTATTTATTCTTGGTAACACTAGTTAGCATCCCAGAATCAAGTTTTTCTGCAGTATTTAAAATGTTTGACATGGATAATGATGGGGAGATAGATAAAGAAGAATTCAAAAGAGTGGTGGCATCGATGCGATCTCATAGCAGGCATGGTGTTCACCGAAGGAATGAACAACAGACGGATGCTTCTGTAGAAAATGGAAGGATGGTGGAATACTTATTTGATAAAGATGGAAAAGGACGCCTCAAACATGATAAATTTGTGAATTTTGTTTGTGGTTTATCTCTTTCTAACAACGTGGTTGAGATTGTTTTCCATTTGTTTGACACAAGTGGGGATGGAAATCTAAGTTCAAATGAGTTTGTTAGAGTGCTACAGAGGCGTGAGAGAGATGTTGGTCGATCTGTGGAGACAGGAATCATGGGTTTCTTGTCATGCTGTTGGAACTGTACAGACACTTCCCCAGGTTCACAGTTGTTCTCCTGA
Protein sequence

>MsG0380017391.01.T01

MNETKCDSLERADLIQLSLFESRFNASSCSSFPSSESNLVRDGSLEGERCPGHLFCPPSEFFMLFDVNGDGLVSFKEYLFLVTLVSIPESSFSAVFKMFDMDNDGEIDKEEFKRVVASMRSHSRHGVHRRNEQQTDASVENGRMVEYLFDKDGKGRLKHDKFVNFVCGLSLSNNVVEIVFHLFDTSGDGNLSSNEFVRVLQRRERDVGRSVETGIMGFLSCCWNCTDTSPGSQLFS*