Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029825.01.T01 | XP_003617613.1 | 92.683 | 82 | 6 | 0 | 50 | 131 | 227 | 308 | 5.00E-45 | 162 |
| MsG0580029825.01.T01 | XP_003617613.1 | 80.851 | 47 | 9 | 0 | 3 | 49 | 85 | 131 | 6.46E-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029825.01.T01 | Q9LSE7 | 51.111 | 90 | 42 | 2 | 44 | 132 | 212 | 300 | 2.49E-23 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029825.01.T01 | G7K8L9 | 92.683 | 82 | 6 | 0 | 50 | 131 | 227 | 308 | 2.39e-45 | 162 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0580029825.01 | 0.803545 | 3.313122e-49 | 1.669561e-46 |
| MsG0080048291.01 | MsG0580029825.01 | 0.823481 | 1.353556e-53 | 1.166863e-50 |
| MsG0080049140.01 | MsG0580029825.01 | 0.829035 | 6.447198e-55 | 6.520219e-52 |
| MsG0180000983.01 | MsG0580029825.01 | 0.860963 | 1.431507e-63 | 3.984139e-60 |
| MsG0180003858.01 | MsG0580029825.01 | 0.811471 | 6.887228e-51 | 4.267022e-48 |
| MsG0180004099.01 | MsG0580029825.01 | 0.890490 | 9.400902e-74 | 7.919739e-70 |
| MsG0180004101.01 | MsG0580029825.01 | 0.801124 | 1.044172e-48 | 4.947366e-46 |
| MsG0180004754.01 | MsG0580029825.01 | 0.842790 | 2.085435e-58 | 3.196678e-55 |
| MsG0180004958.01 | MsG0580029825.01 | 0.801949 | 7.071221e-49 | 3.420925e-46 |
| MsG0180005575.01 | MsG0580029825.01 | 0.810559 | 1.085092e-50 | 6.561927e-48 |
| MsG0180006000.01 | MsG0580029825.01 | 0.802771 | 4.788681e-49 | 2.365820e-46 |
| MsG0180006024.01 | MsG0580029825.01 | 0.807391 | 5.170956e-50 | 2.876737e-47 |
| MsG0280006311.01 | MsG0580029825.01 | 0.809495 | 1.839656e-50 | 1.081737e-47 |
| MsG0280010779.01 | MsG0580029825.01 | 0.822517 | 2.271180e-53 | 1.905377e-50 |
| MsG0280010907.01 | MsG0580029825.01 | 0.824991 | 5.978821e-54 | 5.381066e-51 |
| MsG0280010977.01 | MsG0580029825.01 | 0.800320 | 1.523098e-48 | 7.070946e-46 |
| MsG0280011258.01 | MsG0580029825.01 | 0.803927 | 2.760008e-49 | 1.404602e-46 |
| MsG0280011282.01 | MsG0580029825.01 | 0.817815 | 2.712082e-52 | 1.995612e-49 |
| MsG0380012471.01 | MsG0580029825.01 | 0.802688 | 4.981777e-49 | 2.455917e-46 |
| MsG0480019276.01 | MsG0580029825.01 | 0.819416 | 1.174834e-52 | 9.035189e-50 |
| MsG0480020495.01 | MsG0580029825.01 | 0.813079 | 3.069404e-51 | 1.984846e-48 |
| MsG0480022325.01 | MsG0580029825.01 | 0.811659 | 6.269184e-51 | 3.903087e-48 |
| MsG0480022620.01 | MsG0580029825.01 | 0.804307 | 2.300041e-49 | 1.181927e-46 |
| MsG0480023130.01 | MsG0580029825.01 | 0.822312 | 2.533822e-53 | 2.113278e-50 |
| MsG0580024330.01 | MsG0580029825.01 | 0.801808 | 7.561108e-49 | 3.644838e-46 |
| MsG0580024489.01 | MsG0580029825.01 | 0.838104 | 3.506036e-57 | 4.648029e-54 |
| MsG0580024758.01 | MsG0580029825.01 | 0.817263 | 3.610833e-52 | 2.616897e-49 |
| MsG0580025766.01 | MsG0580029825.01 | 0.828750 | 7.555923e-55 | 7.578078e-52 |
| MsG0580026059.01 | MsG0580029825.01 | 0.865150 | 7.277533e-65 | 2.343550e-61 |
| MsG0380015190.01 | MsG0580029825.01 | 0.825831 | 3.782144e-54 | 3.486258e-51 |
| MsG0380015548.01 | MsG0580029825.01 | 0.825627 | 4.227815e-54 | 3.874483e-51 |
| MsG0380015805.01 | MsG0580029825.01 | 0.833180 | 6.183472e-56 | 7.066362e-53 |
| MsG0380015944.01 | MsG0580029825.01 | 0.810644 | 1.040474e-50 | 6.306388e-48 |
| MsG0380016703.01 | MsG0580029825.01 | 0.815896 | 7.307049e-52 | 5.101278e-49 |
| MsG0380016994.01 | MsG0580029825.01 | 0.815985 | 6.981347e-52 | 4.886018e-49 |
| MsG0380017159.01 | MsG0580029825.01 | 0.844827 | 5.940939e-59 | 9.709644e-56 |
| MsG0380017391.01 | MsG0580029825.01 | 0.806674 | 7.335786e-50 | 4.005568e-47 |
| MsG0580026307.01 | MsG0580029825.01 | 0.825000 | 5.951304e-54 | 5.357585e-51 |
| MsG0580026308.01 | MsG0580029825.01 | 0.834218 | 3.403832e-56 | 4.012622e-53 |
| MsG0580026309.01 | MsG0580029825.01 | 0.828235 | 1.006281e-54 | 9.942988e-52 |
| MsG0580026593.01 | MsG0580029825.01 | 0.822487 | 2.307368e-53 | 1.934016e-50 |
| MsG0580027431.01 | MsG0580029825.01 | 0.815489 | 9.005913e-52 | 6.218266e-49 |
| MsG0580028060.01 | MsG0580029825.01 | 0.819007 | 1.455766e-52 | 1.107074e-49 |
| MsG0580028176.01 | MsG0580029825.01 | 0.821568 | 3.767068e-53 | 3.075913e-50 |
| MsG0580029298.01 | MsG0580029825.01 | 0.810430 | 1.156995e-50 | 6.972640e-48 |
| MsG0580029640.01 | MsG0580029825.01 | 0.823334 | 1.464741e-53 | 1.257438e-50 |
| MsG0580029825.01 | MsG0680030591.01 | 0.804617 | 1.982539e-49 | 1.026910e-46 |
| MsG0580029825.01 | MsG0680030949.01 | 0.804012 | 2.649228e-49 | 1.351121e-46 |
| MsG0580029825.01 | MsG0680031549.01 | 0.806115 | 9.622975e-50 | 5.180276e-47 |
| MsG0580029825.01 | MsG0680034853.01 | 0.812941 | 3.291040e-51 | 2.120301e-48 |
| MsG0580029825.01 | MsG0680034890.01 | 0.826535 | 2.572162e-54 | 2.418788e-51 |
| MsG0580029825.01 | MsG0780036752.01 | 0.844170 | 8.923920e-59 | 1.428685e-55 |
| MsG0580029825.01 | MsG0780036815.01 | 0.822484 | 2.310914e-53 | 1.936813e-50 |
| MsG0580029825.01 | MsG0780038935.01 | 0.810335 | 1.213168e-50 | 7.292758e-48 |
| MsG0580029825.01 | MsG0780041063.01 | 0.823655 | 1.232469e-53 | 1.067830e-50 |
| MsG0580029825.01 | MsG0880041896.01 | 0.857183 | 1.941914e-62 | 4.751962e-59 |
| MsG0580029825.01 | MsG0880042311.01 | 0.803977 | 2.694283e-49 | 1.372897e-46 |
| MsG0580029825.01 | MsG0880042552.01 | 0.811067 | 8.426897e-51 | 5.165549e-48 |
| MsG0580029825.01 | MsG0880042773.01 | 0.835938 | 1.253588e-56 | 1.556087e-53 |
| MsG0580029825.01 | MsG0880044782.01 | 0.820946 | 5.241587e-53 | 4.206682e-50 |
| MsG0580029825.01 | MsG0880047226.01 | 0.815569 | 8.643055e-52 | 5.980549e-49 |
| MsG0580029825.01 | MsG0880047666.01 | 0.849598 | 2.917138e-60 | 5.558687e-57 |
| MsG0280008909.01 | MsG0580029825.01 | 0.840222 | 9.901952e-58 | 1.401110e-54 |
| MsG0280009514.01 | MsG0580029825.01 | 0.803785 | 2.953792e-49 | 1.497668e-46 |
| MsG0280009794.01 | MsG0580029825.01 | 0.819525 | 1.109393e-52 | 8.558237e-50 |
| MsG0280010491.01 | MsG0580029825.01 | 0.810943 | 8.962413e-51 | 5.476307e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029825.01.T01 | MTR_5g093520 | 92.683 | 82 | 6 | 0 | 50 | 131 | 227 | 308 | 6.06e-49 | 162 |
| MsG0580029825.01.T01 | MTR_5g093520 | 80.851 | 47 | 9 | 0 | 3 | 49 | 85 | 131 | 7.82e-19 | 81.3 |
| MsG0580029825.01.T01 | MTR_7g051910 | 42.647 | 136 | 63 | 3 | 10 | 132 | 154 | 287 | 1.46e-26 | 102 |
| MsG0580029825.01.T01 | MTR_2g026080 | 50.602 | 83 | 40 | 1 | 49 | 131 | 211 | 292 | 1.22e-24 | 97.4 |
| MsG0580029825.01.T01 | MTR_4g133620 | 34.351 | 131 | 81 | 3 | 5 | 132 | 162 | 290 | 2.10e-20 | 85.5 |
| MsG0580029825.01.T01 | MTR_8g009880 | 47.561 | 82 | 42 | 1 | 50 | 131 | 213 | 293 | 3.59e-17 | 76.6 |
| MsG0580029825.01.T01 | MTR_5g097620 | 46.341 | 82 | 43 | 1 | 50 | 131 | 253 | 333 | 7.27e-16 | 73.2 |
| MsG0580029825.01.T01 | MTR_8g028075 | 42.857 | 84 | 43 | 2 | 49 | 132 | 399 | 477 | 1.36e-15 | 72.4 |
| MsG0580029825.01.T01 | MTR_3g058510 | 39.759 | 83 | 49 | 1 | 50 | 132 | 209 | 290 | 1.72e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029825.01.T01 | AT3G25290 | 51.111 | 90 | 42 | 2 | 44 | 132 | 212 | 300 | 2.54e-24 | 96.3 |
| MsG0580029825.01.T01 | AT3G25290 | 51.111 | 90 | 42 | 2 | 44 | 132 | 212 | 300 | 2.54e-24 | 96.3 |
| MsG0580029825.01.T01 | AT4G12980 | 46.429 | 84 | 44 | 1 | 49 | 132 | 219 | 301 | 6.04e-23 | 92.8 |
| MsG0580029825.01.T01 | AT5G35735 | 48.810 | 84 | 40 | 1 | 49 | 132 | 209 | 289 | 6.16e-22 | 90.1 |
| MsG0580029825.01.T01 | AT4G17280 | 47.619 | 84 | 43 | 1 | 49 | 132 | 217 | 299 | 1.43e-21 | 89.0 |
| MsG0580029825.01.T01 | AT5G47530 | 47.619 | 84 | 43 | 1 | 49 | 132 | 209 | 291 | 1.95e-21 | 88.6 |
| MsG0580029825.01.T01 | AT2G04850 | 42.105 | 95 | 54 | 1 | 35 | 129 | 203 | 296 | 2.85e-17 | 77.0 |
| MsG0580029825.01.T01 | AT3G07570 | 38.554 | 83 | 47 | 1 | 49 | 131 | 211 | 289 | 3.13e-13 | 65.5 |
| MsG0580029825.01.T01 | AT3G61750 | 44.444 | 81 | 40 | 2 | 51 | 131 | 220 | 295 | 4.37e-13 | 65.1 |
| MsG0580029825.01.T01 | AT3G61750 | 44.444 | 81 | 40 | 2 | 51 | 131 | 143 | 218 | 4.84e-13 | 64.7 |
| MsG0580029825.01.T01 | AT3G59070 | 34.862 | 109 | 57 | 5 | 10 | 105 | 169 | 276 | 2.24e-11 | 60.5 |
Find 46 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTACTGCTGGTTGGGCTAT+TGG | 0.222937 | 5:-102483216 | MsG0580029825.01.T01:CDS |
| TGGGCTATTGGATTGGTTCT+TGG | 0.243224 | 5:-102483204 | MsG0580029825.01.T01:CDS |
| CATGGAGTTCTAAACATTAT+AGG | 0.297798 | 5:-102483360 | MsG0580029825.01.T01:CDS |
| TGCCAAAGGTTCGATGAGTT+TGG | 0.326228 | 5:+102483157 | None:intergenic |
| TCTCATTGGTACTGCTGGTT+GGG | 0.341554 | 5:-102483223 | MsG0580029825.01.T01:CDS |
| CACATTGGTTGCCAAACAAT+TGG | 0.361854 | 5:-102483249 | MsG0580029825.01.T01:CDS |
| ATTGGAACAAAGGCAATCAT+AGG | 0.380791 | 5:-102483999 | MsG0580029825.01.T01:CDS |
| TGCTGGTTGGGCTATTGGAT+TGG | 0.383851 | 5:-102483211 | MsG0580029825.01.T01:CDS |
| TGGTTCCTTAGTAACATCAT+AGG | 0.384440 | 5:+102483941 | None:intergenic |
| CAATGAGAAAACCAATTGTT+TGG | 0.385134 | 5:+102483238 | None:intergenic |
| TTCCAAACTCATCGAACCTT+TGG | 0.390160 | 5:-102483159 | MsG0580029825.01.T01:CDS |
| TTCTCATTGGTACTGCTGGT+TGG | 0.395802 | 5:-102483224 | MsG0580029825.01.T01:CDS |
| ATCATTTCAGCCCTTTCCCC+TGG | 0.395994 | 5:+102484020 | None:intergenic |
| TAAAAGCCTCCAACCCTGTT+TGG | 0.400789 | 5:+102483921 | None:intergenic |
| GGGGAAAGGGCTGAAATGAT+TGG | 0.432198 | 5:-102484017 | MsG0580029825.01.T01:CDS |
| ATGGAGTTCTAAACATTATA+GGG | 0.438643 | 5:-102483359 | MsG0580029825.01.T01:CDS |
| ATGTTACTAAGGAACCAAAC+AGG | 0.440334 | 5:-102483935 | MsG0580029825.01.T01:CDS |
| TGTATTGAAATTTAGGTACA+TGG | 0.442348 | 5:-102483378 | MsG0580029825.01.T01:intron |
| GGATACACTCGAAAGTATCT+TGG | 0.442467 | 5:+102483303 | None:intergenic |
| GGGTGTAAATCCAGGGGAAA+GGG | 0.460004 | 5:-102484030 | MsG0580029825.01.T01:CDS |
| GTGGGGAACATTGTTACCTA+TGG | 0.468400 | 5:-102483337 | MsG0580029825.01.T01:CDS |
| AAGGGGATGGGTGGATAGCA+TGG | 0.470518 | 5:-102484052 | MsG0580029825.01.T01:CDS |
| ATAGCATGGGGTGTAAATCC+AGG | 0.477364 | 5:-102484038 | MsG0580029825.01.T01:CDS |
| GCCAATATGGATCAAGGGGA+TGG | 0.480674 | 5:-102484065 | None:intergenic |
| TTCGGTGCCAATATGGATCA+AGG | 0.487774 | 5:-102484071 | None:intergenic |
| CTTGGAATTATTACTCCCAT+AGG | 0.497045 | 5:+102483321 | None:intergenic |
| TAAAACCTATGATGTTACTA+AGG | 0.510200 | 5:-102483946 | MsG0580029825.01.T01:CDS |
| AGGGGATGGGTGGATAGCAT+GGG | 0.510652 | 5:-102484051 | MsG0580029825.01.T01:CDS |
| GGGGTGTAAATCCAGGGGAA+AGG | 0.530797 | 5:-102484031 | MsG0580029825.01.T01:CDS |
| ATCATAGGGATCAAATATCA+TGG | 0.537405 | 5:-102483984 | MsG0580029825.01.T01:CDS |
| GGCTGAAATGATTGGAACAA+AGG | 0.548087 | 5:-102484009 | MsG0580029825.01.T01:CDS |
| CCAATATGGATCAAGGGGAT+GGG | 0.551351 | 5:-102484064 | None:intergenic |
| GTTCTAAACATTATAGGGTG+GGG | 0.552349 | 5:-102483354 | MsG0580029825.01.T01:CDS |
| ATATGGATCAAGGGGATGGG+TGG | 0.557364 | 5:-102484061 | MsG0580029825.01.T01:CDS |
| AGTTCTAAACATTATAGGGT+GGG | 0.567799 | 5:-102483355 | MsG0580029825.01.T01:CDS |
| TAGCATGGGGTGTAAATCCA+GGG | 0.574940 | 5:-102484037 | MsG0580029825.01.T01:CDS |
| TCGGTGCCAATATGGATCAA+GGG | 0.576863 | 5:-102484070 | None:intergenic |
| GGGGATGGGTGGATAGCATG+GGG | 0.582355 | 5:-102484050 | MsG0580029825.01.T01:CDS |
| TTGGAACAAAGGCAATCATA+GGG | 0.588140 | 5:-102483998 | MsG0580029825.01.T01:CDS |
| TGGGGAACATTGTTACCTAT+GGG | 0.591485 | 5:-102483336 | MsG0580029825.01.T01:CDS |
| CGGTGCCAATATGGATCAAG+GGG | 0.603107 | 5:-102484069 | None:intergenic |
| GAGTTCTAAACATTATAGGG+TGG | 0.623171 | 5:-102483356 | MsG0580029825.01.T01:CDS |
| AGTGAAAATGAGAATGCCAA+AGG | 0.626910 | 5:+102483143 | None:intergenic |
| TGTTACTAAGGAACCAAACA+GGG | 0.643040 | 5:-102483934 | MsG0580029825.01.T01:intron |
| ATGTGCAAGTAAAACCACCA+TGG | 0.696565 | 5:+102483267 | None:intergenic |
| AGCATGGGGTGTAAATCCAG+GGG | 0.707308 | 5:-102484036 | MsG0580029825.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCATTAGTTTTTTT+TGG | - | Chr5:102483714-102483733 | MsG0580029825.01.T01:intron | 10.0% |
| !! | CTTATTATGTATTGAAATTT+AGG | - | Chr5:102483805-102483824 | MsG0580029825.01.T01:intron | 15.0% |
| !! | TTATGTTATATTTATCAGAA+GGG | + | Chr5:102483385-102483404 | None:intergenic | 15.0% |
| !! | CAATCATGTTTAATTAATTG+TGG | - | Chr5:102483601-102483620 | MsG0580029825.01.T01:intron | 20.0% |
| !! | CTGATAAATATAACATAACA+AGG | - | Chr5:102483387-102483406 | MsG0580029825.01.T01:intron | 20.0% |
| !! | GATTGATCTGTTAATAATAT+TGG | + | Chr5:102483750-102483769 | None:intergenic | 20.0% |
| !! | GTTATGTTATATTTATCAGA+AGG | + | Chr5:102483386-102483405 | None:intergenic | 20.0% |
| !! | TCTATATTGTGAATATTTGT+TGG | + | Chr5:102483469-102483488 | None:intergenic | 20.0% |
| ! | TAAAACCTATGATGTTACTA+AGG | - | Chr5:102483244-102483263 | MsG0580029825.01.T01:CDS | 25.0% |
| ! | TGTATTGAAATTTAGGTACA+TGG | - | Chr5:102483812-102483831 | MsG0580029825.01.T01:intron | 25.0% |
| ! | TGTTTAATTAATTGTGGTTC+AGG | - | Chr5:102483607-102483626 | MsG0580029825.01.T01:intron | 25.0% |
| !! | GCTTTTATCTACAATGATAT+TGG | - | Chr5:102483285-102483304 | MsG0580029825.01.T01:CDS | 25.0% |
| !! | TATTGTGAATATTTGTTGGA+TGG | + | Chr5:102483465-102483484 | None:intergenic | 25.0% |
| !!! | ATGGAGTTCTAAACATTATA+GGG | - | Chr5:102483831-102483850 | MsG0580029825.01.T01:intron | 25.0% |
| !!! | TGTTGTGAATCTTTATTTTG+CGG | - | Chr5:102483644-102483663 | MsG0580029825.01.T01:intron | 25.0% |
| !!! | TTTTTTGTCAATAAATCACC+TGG | + | Chr5:102483784-102483803 | None:intergenic | 25.0% |
| ACATAGTAGCAAAAGAGAAA+AGG | + | Chr5:102483573-102483592 | None:intergenic | 30.0% | |
| ATCATAGGGATCAAATATCA+TGG | - | Chr5:102483206-102483225 | MsG0580029825.01.T01:CDS | 30.0% | |
| CAATGAGAAAACCAATTGTT+TGG | + | Chr5:102483955-102483974 | None:intergenic | 30.0% | |
| !! | AGTTCTAAACATTATAGGGT+GGG | - | Chr5:102483835-102483854 | MsG0580029825.01.T01:intron | 30.0% |
| !! | ATCCTTTTAAAAAGGATCCA+TGG | - | Chr5:102483906-102483925 | MsG0580029825.01.T01:intron | 30.0% |
| !! | CATGGAGTTCTAAACATTAT+AGG | - | Chr5:102483830-102483849 | MsG0580029825.01.T01:intron | 30.0% |
| !! | TCGAGTGTATCCTTTTAAAA+AGG | - | Chr5:102483898-102483917 | MsG0580029825.01.T01:intron | 30.0% |
| !!! | CAAACAATTGGTTTTCTCAT+TGG | - | Chr5:102483953-102483972 | MsG0580029825.01.T01:CDS | 30.0% |
| AGTGAAAATGAGAATGCCAA+AGG | + | Chr5:102484050-102484069 | None:intergenic | 35.0% | |
| ATATGCTCGATTCAAGATGA+AGG | - | Chr5:102483324-102483343 | MsG0580029825.01.T01:CDS | 35.0% | |
| ATGTTACTAAGGAACCAAAC+AGG | - | Chr5:102483255-102483274 | MsG0580029825.01.T01:CDS | 35.0% | |
| ATTGGAACAAAGGCAATCAT+AGG | - | Chr5:102483191-102483210 | MsG0580029825.01.T01:CDS | 35.0% | |
| CTTGGAATTATTACTCCCAT+AGG | + | Chr5:102483872-102483891 | None:intergenic | 35.0% | |
| TAACAAGGTTGAACCATGTT+TGG | - | Chr5:102483402-102483421 | MsG0580029825.01.T01:intron | 35.0% | |
| TATGCTCGATTCAAGATGAA+GGG | - | Chr5:102483325-102483344 | MsG0580029825.01.T01:CDS | 35.0% | |
| TGCAGCAAAAATTGCAATTG+CGG | - | Chr5:102483672-102483691 | MsG0580029825.01.T01:intron | 35.0% | |
| TGGTTCCTTAGTAACATCAT+AGG | + | Chr5:102483252-102483271 | None:intergenic | 35.0% | |
| TGTTACTAAGGAACCAAACA+GGG | - | Chr5:102483256-102483275 | MsG0580029825.01.T01:CDS | 35.0% | |
| TGTTAGGGTGATATACCTTT+GGG | - | Chr5:102483439-102483458 | MsG0580029825.01.T01:intron | 35.0% | |
| TTGGAACAAAGGCAATCATA+GGG | - | Chr5:102483192-102483211 | MsG0580029825.01.T01:CDS | 35.0% | |
| ! | CACCATGGATCCTTTTTAAA+AGG | + | Chr5:102483911-102483930 | None:intergenic | 35.0% |
| ! | GTTCTAAACATTATAGGGTG+GGG | - | Chr5:102483836-102483855 | MsG0580029825.01.T01:intron | 35.0% |
| !! | CTTTTAAAAAGGATCCATGG+TGG | - | Chr5:102483909-102483928 | MsG0580029825.01.T01:intron | 35.0% |
| !! | GAGTTCTAAACATTATAGGG+TGG | - | Chr5:102483834-102483853 | MsG0580029825.01.T01:intron | 35.0% |
| AAAGGATTGTTACCGATCGA+AGG | + | Chr5:102483555-102483574 | None:intergenic | 40.0% | |
| ATCAATCTTGCATTGCATCC+AGG | - | Chr5:102483763-102483782 | MsG0580029825.01.T01:intron | 40.0% | |
| ATGTGCAAGTAAAACCACCA+TGG | + | Chr5:102483926-102483945 | None:intergenic | 40.0% | |
| CTGTTAGGGTGATATACCTT+TGG | - | Chr5:102483438-102483457 | MsG0580029825.01.T01:intron | 40.0% | |
| GAAACTGAGTTTCCTTCGAT+CGG | - | Chr5:102483540-102483559 | MsG0580029825.01.T01:intron | 40.0% | |
| GGCTGAAATGATTGGAACAA+AGG | - | Chr5:102483181-102483200 | MsG0580029825.01.T01:CDS | 40.0% | |
| TGAACCATGTTTGGCAAGTT+GGG | - | Chr5:102483411-102483430 | MsG0580029825.01.T01:intron | 40.0% | |
| TGGGGAACATTGTTACCTAT+GGG | - | Chr5:102483854-102483873 | MsG0580029825.01.T01:intron | 40.0% | |
| TTCCAAACTCATCGAACCTT+TGG | - | Chr5:102484031-102484050 | MsG0580029825.01.T01:CDS | 40.0% | |
| TTGAACCATGTTTGGCAAGT+TGG | - | Chr5:102483410-102483429 | MsG0580029825.01.T01:intron | 40.0% | |
| ! | ATATTTGTTGGATGGCCCAA+AGG | + | Chr5:102483457-102483476 | None:intergenic | 40.0% |
| ! | CACATTGGTTGCCAAACAAT+TGG | - | Chr5:102483941-102483960 | MsG0580029825.01.T01:CDS | 40.0% |
| !! | GGATACACTCGAAAGTATCT+TGG | + | Chr5:102483890-102483909 | None:intergenic | 40.0% |
| !! | TGGTGGTTTTACTTGCACAT+TGG | - | Chr5:102483926-102483945 | MsG0580029825.01.T01:intron | 40.0% |
| ACTAAGGAACCAAACAGGGT+TGG | - | Chr5:102483260-102483279 | MsG0580029825.01.T01:CDS | 45.0% | |
| ATAGACTTGACTTCTCCCGA+TGG | - | Chr5:102483502-102483521 | MsG0580029825.01.T01:intron | 45.0% | |
| ATAGCATGGGGTGTAAATCC+AGG | - | Chr5:102483152-102483171 | MsG0580029825.01.T01:CDS | 45.0% | |
| GTGGGGAACATTGTTACCTA+TGG | - | Chr5:102483853-102483872 | MsG0580029825.01.T01:intron | 45.0% | |
| TAAAAGCCTCCAACCCTGTT+TGG | + | Chr5:102483272-102483291 | None:intergenic | 45.0% | |
| TAGCATGGGGTGTAAATCCA+GGG | - | Chr5:102483153-102483172 | MsG0580029825.01.T01:CDS | 45.0% | |
| TGCCAAAGGTTCGATGAGTT+TGG | + | Chr5:102484036-102484055 | None:intergenic | 45.0% | |
| TTCTCATTGGTACTGCTGGT+TGG | - | Chr5:102483966-102483985 | MsG0580029825.01.T01:CDS | 45.0% | |
| ! | GGTTTTCTCATTGGTACTGC+TGG | - | Chr5:102483962-102483981 | MsG0580029825.01.T01:CDS | 45.0% |
| ! | TCTCATTGGTACTGCTGGTT+GGG | - | Chr5:102483967-102483986 | MsG0580029825.01.T01:CDS | 45.0% |
| !! | TGGGCTATTGGATTGGTTCT+TGG | - | Chr5:102483986-102484005 | MsG0580029825.01.T01:CDS | 45.0% |
| AAGGAACCAAACAGGGTTGG+AGG | - | Chr5:102483263-102483282 | MsG0580029825.01.T01:CDS | 50.0% | |
| AGCATGGGGTGTAAATCCAG+GGG | - | Chr5:102483154-102483173 | MsG0580029825.01.T01:CDS | 50.0% | |
| ATCATTTCAGCCCTTTCCCC+TGG | + | Chr5:102483173-102483192 | None:intergenic | 50.0% | |
| CCTTCCCAACTTGCCAAACA+TGG | + | Chr5:102483418-102483437 | None:intergenic | 50.0% | |
| GGGGAAAGGGCTGAAATGAT+TGG | - | Chr5:102483173-102483192 | MsG0580029825.01.T01:CDS | 50.0% | |
| GGGTGTAAATCCAGGGGAAA+GGG | - | Chr5:102483160-102483179 | MsG0580029825.01.T01:CDS | 50.0% | |
| ! | CCATGTTTGGCAAGTTGGGA+AGG | - | Chr5:102483415-102483434 | MsG0580029825.01.T01:intron | 50.0% |
| ! | GCAAGTTGGGAAGGCTGTTA+GGG | - | Chr5:102483424-102483443 | MsG0580029825.01.T01:intron | 50.0% |
| ! | TGCTGGTTGGGCTATTGGAT+TGG | - | Chr5:102483979-102483998 | MsG0580029825.01.T01:CDS | 50.0% |
| AAGGGGATGGGTGGATAGCA+TGG | - | Chr5:102483138-102483157 | MsG0580029825.01.T01:CDS | 55.0% | |
| AGGGGATGGGTGGATAGCAT+GGG | - | Chr5:102483139-102483158 | MsG0580029825.01.T01:CDS | 55.0% | |
| GGGGTGTAAATCCAGGGGAA+AGG | - | Chr5:102483159-102483178 | MsG0580029825.01.T01:CDS | 55.0% | |
| ! | GGCAAGTTGGGAAGGCTGTT+AGG | - | Chr5:102483423-102483442 | MsG0580029825.01.T01:intron | 55.0% |
| ! | GGTACTGCTGGTTGGGCTAT+TGG | - | Chr5:102483974-102483993 | MsG0580029825.01.T01:CDS | 55.0% |
| CCACCCATCCCCTTGATCCA+TGG | + | Chr5:102483132-102483151 | None:intergenic | 60.0% | |
| CTGTCCCTTGCTGCGACCAT+CGG | + | Chr5:102483521-102483540 | None:intergenic | 60.0% | |
| GGGGATGGGTGGATAGCATG+GGG | - | Chr5:102483140-102483159 | MsG0580029825.01.T01:CDS | 60.0% | |
| TCTCCCGATGGTCGCAGCAA+GGG | - | Chr5:102483514-102483533 | MsG0580029825.01.T01:intron | 60.0% | |
| TGTCCCTTGCTGCGACCATC+GGG | + | Chr5:102483520-102483539 | None:intergenic | 60.0% | |
| TTCTCCCGATGGTCGCAGCA+AGG | - | Chr5:102483513-102483532 | MsG0580029825.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 102483131 | 102484081 | 102483131 | ID=MsG0580029825.01;Name=MsG0580029825.01 |
| Chr5 | mRNA | 102483131 | 102484081 | 102483131 | ID=MsG0580029825.01.T01;Parent=MsG0580029825.01;Name=MsG0580029825.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|0|0|2|0|134 |
| Chr5 | exon | 102483935 | 102484081 | 102483935 | ID=MsG0580029825.01.T01:exon:8798;Parent=MsG0580029825.01.T01 |
| Chr5 | exon | 102483131 | 102483385 | 102483131 | ID=MsG0580029825.01.T01:exon:8797;Parent=MsG0580029825.01.T01 |
| Chr5 | CDS | 102483935 | 102484081 | 102483935 | ID=MsG0580029825.01.T01:cds;Parent=MsG0580029825.01.T01 |
| Chr5 | CDS | 102483131 | 102483385 | 102483131 | ID=MsG0580029825.01.T01:cds;Parent=MsG0580029825.01.T01 |
| Gene Sequence |
| Protein sequence |
