AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018048.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018048.01.T01 MTR_3g117800 90.435 115 9 1 143 255 259 373 8.45e-67 215
MsG0380018048.01.T01 MTR_3g117800 85.965 57 8 0 102 158 1 57 7.28e-26 106
MsG0380018048.01.T01 MTR_3g117800 90.435 115 9 1 143 255 289 403 1.34e-66 216
MsG0380018048.01.T01 MTR_3g117800 86.905 84 11 0 75 158 4 87 2.16e-42 152
MsG0380018048.01.T01 MTR_3g117800 90.435 115 9 1 143 255 340 454 3.53e-66 216
MsG0380018048.01.T01 MTR_3g117800 78.014 141 24 3 22 158 1 138 9.45e-65 212
MsG0380018048.01.T01 MTR_5g049180 45.378 119 57 4 142 255 367 482 1.39e-22 97.8
MsG0380018048.01.T01 MTR_7g024420 43.220 118 59 4 143 255 368 482 8.97e-22 95.5
MsG0380018048.01.T01 MTR_3g103610 42.593 108 60 2 142 248 546 652 1.11e-20 92.4
MsG0380018048.01.T01 MTR_4g074070 40.984 122 64 5 142 258 367 485 7.64e-19 86.7
MsG0380018048.01.T01 MTR_1g017020 39.450 109 62 3 142 248 709 815 1.09e-17 83.6
MsG0380018048.01.T01 MTR_1g106910 31.973 147 89 5 110 250 349 490 2.05e-16 79.7
MsG0380018048.01.T01 MTR_1g106790 33.600 125 73 4 139 257 377 497 7.60e-15 75.1
MsG0380018048.01.T01 MTR_1g106770 37.037 108 58 4 149 250 353 456 2.43e-14 73.6
MsG0380018048.01.T01 MTR_1g106200 37.037 108 60 3 148 250 360 464 4.82e-14 72.4
MsG0380018048.01.T01 MTR_1g106200 37.037 108 60 3 148 250 387 491 5.37e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018048.01.T01 AT4G38650 65.000 140 43 3 119 255 345 481 1.15e-52 181
MsG0380018048.01.T01 AT4G38650 47.244 127 61 2 32 152 31 157 1.10e-31 124
MsG0380018048.01.T01 AT4G38300 65.116 86 27 2 143 225 178 263 4.93e-31 117
MsG0380018048.01.T01 AT4G33840 43.243 111 58 2 148 255 378 486 9.31e-23 98.2
MsG0380018048.01.T01 AT4G33830 42.063 126 65 3 134 253 362 485 1.44e-22 97.8
MsG0380018048.01.T01 AT4G33860 47.368 95 45 2 164 255 394 486 1.49e-21 94.7
MsG0380018048.01.T01 AT1G10050 45.161 93 50 1 156 248 884 975 1.32e-19 89.4
MsG0380018048.01.T01 AT1G10050 45.161 93 50 1 156 248 884 975 1.32e-19 89.4
MsG0380018048.01.T01 AT1G10050 45.161 93 50 1 156 248 916 1007 1.38e-19 89.4
MsG0380018048.01.T01 AT1G58370 39.450 109 62 3 142 248 747 853 1.37e-17 83.6
MsG0380018048.01.T01 AT1G58370 39.450 109 62 3 142 248 719 825 1.41e-17 83.2
MsG0380018048.01.T01 AT4G33810 32.192 146 90 4 110 250 292 433 3.07e-15 76.3
MsG0380018048.01.T01 AT4G33810 32.192 146 90 4 110 250 292 433 3.07e-15 76.3
MsG0380018048.01.T01 AT4G33810 31.818 154 96 4 110 258 332 481 3.42e-15 75.9
MsG0380018048.01.T01 AT4G33810 31.818 154 96 4 110 258 332 481 3.42e-15 75.9
MsG0380018048.01.T01 AT4G33810 31.818 154 96 4 110 258 332 481 3.42e-15 75.9
MsG0380018048.01.T01 AT4G08160 39.175 97 58 1 152 248 566 661 6.38e-15 75.5
MsG0380018048.01.T01 AT4G33820 49.296 71 31 2 180 248 404 471 4.54e-14 72.8
MsG0380018048.01.T01 AT2G14690 44.444 81 40 2 180 258 397 474 7.59e-13 68.9
MsG0380018048.01.T01 AT4G08160 36.559 93 58 1 152 244 566 657 7.86e-12 65.9

Find 75 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTAGGAGAATATAGAATT+AGG 0.197889 3:+103731423 MsG0380018048.01.T01:three_prime_UTR
TTATTTGTAGGCAATTTATT+TGG 0.199684 3:+103731186 MsG0380018048.01.T01:intron
AAGAGCTATCCTAGACAAAT+TGG 0.323111 3:+103730986 MsG0380018048.01.T01:CDS
TGTAAGCAGTAGAGTCATAT+AGG 0.332357 3:-103729457 None:intergenic
CATTGTCTGTGAGGCACATT+TGG 0.350045 3:-103731290 None:intergenic
TTACATGAGCAGTTAAATAA+AGG 0.364013 3:+103731628 MsG0380018048.01.T01:three_prime_UTR
GTAAGCAGTAGAGTCATATA+GGG 0.368725 3:-103729456 None:intergenic
GCTCTTATAAGTGGAAGATT+TGG 0.368945 3:-103730969 None:intergenic
CCACCGTAAAGTGGCTTCTC+TGG 0.371358 3:-103729598 None:intergenic
ATGAGACATATAACTGTATT+GGG 0.377080 3:+103729999 MsG0380018048.01.T01:CDS
TACAGATTCAGTTATGATAA+AGG 0.377300 3:+103729958 MsG0380018048.01.T01:CDS
AATGAGACATATAACTGTAT+TGG 0.393839 3:+103729998 MsG0380018048.01.T01:CDS
CATCCAGAGAAGCCACTTTA+CGG 0.403538 3:+103729595 MsG0380018048.01.T01:CDS
CTTAGGAGAATATAGAATTA+GGG 0.404134 3:+103731424 MsG0380018048.01.T01:three_prime_UTR
AGGTTCTAGTGAAGAAGTTA+AGG 0.410579 3:-103731555 None:intergenic
TGGCAAACTGGTCGTGTAGA+AGG 0.419661 3:+103731362 MsG0380018048.01.T01:CDS
CAGTGAATGGGATAATGCTT+TGG 0.423472 3:+103731242 MsG0380018048.01.T01:CDS
TGAACTAAGTGATGTTAATC+TGG 0.429828 3:+103728966 MsG0380018048.01.T01:CDS
TCCCGTTTGGCTTACTGAGA+TGG 0.433430 3:+103731022 MsG0380018048.01.T01:CDS
TTCTCACACCCTTCAGTGAA+TGG 0.434692 3:+103731229 MsG0380018048.01.T01:CDS
GTTACAATTCTCCTTGAGAA+AGG 0.439341 3:-103731575 None:intergenic
GAGCATGATATTTATGTGGT+TGG 0.440349 3:+103728924 None:intergenic
CAACACTAGATCTTCCCGTT+TGG 0.443376 3:+103731009 MsG0380018048.01.T01:CDS
ATAAGAGAACTAAGACAATA+TGG 0.448976 3:+103730903 MsG0380018048.01.T01:CDS
ATTTATGTGGTTGGACATCC+TGG 0.456669 3:+103728933 MsG0380018048.01.T01:CDS
TTGGACAGCACTTCATCCAT+GGG 0.457179 3:+103731261 MsG0380018048.01.T01:CDS
TCCATCTCAGTAAGCCAAAC+GGG 0.459272 3:-103731023 None:intergenic
TTTGGACAGCACTTCATCCA+TGG 0.478680 3:+103731260 MsG0380018048.01.T01:CDS
CTGTCTCTATCAACTCTGAT+TGG 0.479768 3:+103731603 MsG0380018048.01.T01:three_prime_UTR
CCACTTTACGGTGGAGGAGG+AGG 0.484097 3:+103729607 MsG0380018048.01.T01:CDS
ATCCATCTCAGTAAGCCAAA+CGG 0.485138 3:-103731024 None:intergenic
TTTATTTGGAACAAGTATTG+AGG 0.493659 3:+103731200 MsG0380018048.01.T01:CDS
AAATGACCAACATCCACGTT+TGG 0.493661 3:-103730032 None:intergenic
AAATTAAGTCACAGTGTCAC+AGG 0.494605 3:-103731515 None:intergenic
TCTAGGATAGCTCTTATAAG+TGG 0.496749 3:-103730978 None:intergenic
GATTTCAACAACTTACCATC+AGG 0.497916 3:+103731312 MsG0380018048.01.T01:CDS
AAGCCACTTTACGGTGGAGG+AGG 0.499159 3:+103729604 MsG0380018048.01.T01:CDS
CCTCCTCCTCCACCGTAAAG+TGG 0.507893 3:-103729607 None:intergenic
TGTTGGTCATTTCTCAAAGG+TGG 0.513377 3:+103730043 MsG0380018048.01.T01:CDS
TCTCACACCCTTCAGTGAAT+GGG 0.515758 3:+103731230 MsG0380018048.01.T01:CDS
TTATTTGGAACAAGTATTGA+GGG 0.519096 3:+103731201 MsG0380018048.01.T01:CDS
ATCTGAGTTGTGAAAGAAGA+TGG 0.523796 3:-103730098 None:intergenic
CTAGTGTTGCCAATTTGTCT+AGG 0.527390 3:-103730995 None:intergenic
CAAAGAGCATGATATTTATG+TGG 0.532017 3:+103728920 None:intergenic
AAGATGGTAGATGAATTTGA+AGG 0.553423 3:-103730082 None:intergenic
GAGAAGCCACTTTACGGTGG+AGG 0.555307 3:+103729601 MsG0380018048.01.T01:CDS
TTGGAACAAGTATTGAGGGA+AGG 0.561612 3:+103731205 MsG0380018048.01.T01:CDS
AGCATTATCCCATTCACTGA+AGG 0.566045 3:-103731238 None:intergenic
ATCTTCTTTCACAACTCAGA+TGG 0.566431 3:+103730100 MsG0380018048.01.T01:CDS
AGATTATAGAAGACAAGTGA+AGG 0.569889 3:-103729679 None:intergenic
ATGGATGGAATTGGTCTCGA+GGG 0.573124 3:+103730933 MsG0380018048.01.T01:CDS
CACACTTGATCATGATACTC+AGG 0.577347 3:+103731055 MsG0380018048.01.T01:CDS
CTTCACTAGAACCTTTCTCA+AGG 0.584604 3:+103731564 MsG0380018048.01.T01:three_prime_UTR
TCAACTTTCTCTCTATGTAG+AGG 0.586344 3:+103731473 MsG0380018048.01.T01:three_prime_UTR
GCACATTTGGTAGCACCCCA+TGG 0.588207 3:-103731277 None:intergenic
GCATTATCCCATTCACTGAA+GGG 0.590706 3:-103731237 None:intergenic
CAACTTACCATCAGGTGATG+TGG 0.598575 3:+103731320 MsG0380018048.01.T01:CDS
GGATGTTGGTCATTTCTCAA+AGG 0.605842 3:+103730040 MsG0380018048.01.T01:CDS
TTAGTTCACAACGCAAGACC+AGG 0.610442 3:-103728951 None:intergenic
TATGGATGGAATTGGTCTCG+AGG 0.616485 3:+103730932 MsG0380018048.01.T01:CDS
CAACAACACCAACACGAACA+CGG 0.618184 3:+103729651 MsG0380018048.01.T01:CDS
AATTAAGTCACAGTGTCACA+GGG 0.628706 3:-103731514 None:intergenic
TTATCCACCACATCACCTGA+TGG 0.643051 3:-103731327 None:intergenic
CTTACCATCAGGTGATGTGG+TGG 0.645932 3:+103731323 MsG0380018048.01.T01:CDS
ATTCAGTTATGATAAAGGCA+AGG 0.650648 3:+103729963 MsG0380018048.01.T01:CDS
GAAGGTATCACAGATGAGCA+TGG 0.651877 3:+103731380 MsG0380018048.01.T01:exon
AGGTGAAGCCGTGTTCGTGT+TGG 0.662305 3:-103729659 None:intergenic
TAAGCAGTAGAGTCATATAG+GGG 0.663519 3:-103729455 None:intergenic
TGGACAGCACTTCATCCATG+GGG 0.663944 3:+103731262 MsG0380018048.01.T01:CDS
TGACTCTACTGCTTACACTC+AGG 0.668323 3:+103729463 MsG0380018048.01.T01:CDS
GGCTGCTACAGTATGGGTGA+AGG 0.668347 3:+103729928 MsG0380018048.01.T01:intron
GCGTTGACGCTTATATCTCA+CGG 0.669191 3:+103730880 MsG0380018048.01.T01:CDS
CCAGAGAAGCCACTTTACGG+TGG 0.680549 3:+103729598 MsG0380018048.01.T01:CDS
AGAGTTGATAGAGACAGTTG+TGG 0.708134 3:-103731597 None:intergenic
TGTTGAAATCATTGTCTGTG+AGG 0.726848 3:-103731299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAACAGAATTCATACAT+TGG + Chr3:103730699-103730718 MsG0380018048.01.T01:intron 20.0%
!! ATGAATGAATGAATCAATAA+AGG - Chr3:103729389-103729408 None:intergenic 20.0%
!! TAAAACAGAATTCATACATT+GGG + Chr3:103730700-103730719 MsG0380018048.01.T01:intron 20.0%
!! TTATTTGTAGGCAATTTATT+TGG + Chr3:103731186-103731205 MsG0380018048.01.T01:intron 20.0%
!!! AAATGAACAGAGTTTATTTT+TGG + Chr3:103731663-103731682 MsG0380018048.01.T01:three_prime_UTR 20.0%
!!! ATGTATGAATTCTGTTTTAT+TGG - Chr3:103730699-103730718 None:intergenic 20.0%
! AAAGAAATGAAATGTAGCAT+TGG - Chr3:103730777-103730796 None:intergenic 25.0%
! AAGAAATGAAATGTAGCATT+GGG - Chr3:103730776-103730795 None:intergenic 25.0%
! AATGAGACATATAACTGTAT+TGG + Chr3:103729998-103730017 MsG0380018048.01.T01:CDS 25.0%
! AGAAGAAAAATATGATGGTA+TGG - Chr3:103729310-103729329 None:intergenic 25.0%
! ATAAGAGAACTAAGACAATA+TGG + Chr3:103730903-103730922 MsG0380018048.01.T01:CDS 25.0%
! ATATCAAAAGACTTTCCTAT+TGG + Chr3:103730378-103730397 MsG0380018048.01.T01:intron 25.0%
! ATGAGACATATAACTGTATT+GGG + Chr3:103729999-103730018 MsG0380018048.01.T01:CDS 25.0%
! CTTAGGAGAATATAGAATTA+GGG + Chr3:103731424-103731443 MsG0380018048.01.T01:three_prime_UTR 25.0%
! GAAGAAGAAGAAAAATATGA+TGG - Chr3:103729315-103729334 None:intergenic 25.0%
! TACAGATTCAGTTATGATAA+AGG + Chr3:103729958-103729977 MsG0380018048.01.T01:CDS 25.0%
! TACTACGTTTGAAAGTTAAT+GGG - Chr3:103729158-103729177 None:intergenic 25.0%
! TCTTAGGAGAATATAGAATT+AGG + Chr3:103731423-103731442 MsG0380018048.01.T01:three_prime_UTR 25.0%
! TTACATGAGCAGTTAAATAA+AGG + Chr3:103731628-103731647 MsG0380018048.01.T01:three_prime_UTR 25.0%
!! ATATGCTACTTAACTTAACA+CGG + Chr3:103729196-103729215 MsG0380018048.01.T01:intron 25.0%
!! TTTATTTGGAACAAGTATTG+AGG + Chr3:103731200-103731219 MsG0380018048.01.T01:CDS 25.0%
!!! AAGACAATATGGTGTTTTTA+TGG + Chr3:103730914-103730933 MsG0380018048.01.T01:CDS 25.0%
!!! TGATGATCATTATGTTGTTT+TGG - Chr3:103730228-103730247 None:intergenic 25.0%
!!! TTATTTGGAACAAGTATTGA+GGG + Chr3:103731201-103731220 MsG0380018048.01.T01:CDS 25.0%
AAGATGGTAGATGAATTTGA+AGG - Chr3:103730085-103730104 None:intergenic 30.0%
AGATTATAGAAGACAAGTGA+AGG - Chr3:103729682-103729701 None:intergenic 30.0%
ATTAAAAATGATTCCGTTGC+CGG + Chr3:103729795-103729814 MsG0380018048.01.T01:intron 30.0%
ATTCAGTTATGATAAAGGCA+AGG + Chr3:103729963-103729982 MsG0380018048.01.T01:CDS 30.0%
CATTCATAAACAGTTGCTAA+AGG - Chr3:103730821-103730840 None:intergenic 30.0%
CTCTAACAAATTGCATCATT+TGG - Chr3:103730547-103730566 None:intergenic 30.0%
CTTGTAATTTCCTTCCATTA+GGG - Chr3:103730335-103730354 None:intergenic 30.0%
GGATTATTGTTGATGTCATT+GGG + Chr3:103729876-103729895 MsG0380018048.01.T01:intron 30.0%
GTACTACGTTTGAAAGTTAA+TGG - Chr3:103729159-103729178 None:intergenic 30.0%
TATCAGAATTGGTTGTGAAA+CGG + Chr3:103730438-103730457 MsG0380018048.01.T01:intron 30.0%
TGAACTAAGTGATGTTAATC+TGG + Chr3:103728966-103728985 MsG0380018048.01.T01:CDS 30.0%
TGCTACATTTCATTTCTTTG+AGG + Chr3:103730778-103730797 MsG0380018048.01.T01:intron 30.0%
TTCTTCACATGCTACAATAT+AGG - Chr3:103729054-103729073 None:intergenic 30.0%
TTGCCTACAAATAAGAATGA+AGG - Chr3:103731180-103731199 None:intergenic 30.0%
TTTCACAACCAATTCTGATA+TGG - Chr3:103730438-103730457 None:intergenic 30.0%
! ACTTTGATTTCTACGAACAA+AGG + Chr3:103730744-103730763 MsG0380018048.01.T01:intron 30.0%
! ATGGTTCACATAGCTTTTAT+GGG + Chr3:103731399-103731418 MsG0380018048.01.T01:three_prime_UTR 30.0%
! CTTCTAGTTATAATACCGAT+GGG + Chr3:103729331-103729350 MsG0380018048.01.T01:intron 30.0%
! GACACTATCTATTCTTTTTC+TGG + Chr3:103729709-103729728 MsG0380018048.01.T01:CDS 30.0%
! TATGCTACTTAACTTAACAC+GGG + Chr3:103729197-103729216 MsG0380018048.01.T01:intron 30.0%
! TCTTCTAGTTATAATACCGA+TGG + Chr3:103729330-103729349 MsG0380018048.01.T01:intron 30.0%
! TCTTTGAAAACGAGCTTAAA+TGG + Chr3:103730474-103730493 MsG0380018048.01.T01:intron 30.0%
! TTCTAGTTATAATACCGATG+GGG + Chr3:103729332-103729351 MsG0380018048.01.T01:intron 30.0%
! TTGCCTTCATTCTTATTTGT+AGG + Chr3:103731174-103731193 MsG0380018048.01.T01:intron 30.0%
!! CAATATGGTGTTTTTATGGA+TGG + Chr3:103730918-103730937 MsG0380018048.01.T01:CDS 30.0%
!! CAGTGTTGATGATATATTGT+TGG - Chr3:103730198-103730217 None:intergenic 30.0%
AAATTAAGTCACAGTGTCAC+AGG - Chr3:103731518-103731537 None:intergenic 35.0%
AAGAGCTATCCTAGACAAAT+TGG + Chr3:103730986-103731005 MsG0380018048.01.T01:CDS 35.0%
AATTAAGTCACAGTGTCACA+GGG - Chr3:103731517-103731536 None:intergenic 35.0%
ATAATCCGTTGTAGTCTAGT+TGG - Chr3:103729863-103729882 None:intergenic 35.0%
ATATGGTATGTTGCCAAGAA+TGG - Chr3:103730421-103730440 None:intergenic 35.0%
ATCTGAGTTGTGAAAGAAGA+TGG - Chr3:103730101-103730120 None:intergenic 35.0%
ATCTTAACTGTGTACCTGTA+AGG - Chr3:103730642-103730661 None:intergenic 35.0%
ATCTTCTTTCACAACTCAGA+TGG + Chr3:103730100-103730119 MsG0380018048.01.T01:CDS 35.0%
ATGATGGTATGGAATGAAGT+AGG - Chr3:103729299-103729318 None:intergenic 35.0%
CCTAATGGAAGGAAATTACA+AGG + Chr3:103730333-103730352 MsG0380018048.01.T01:intron 35.0%
CCTTGTAATTTCCTTCCATT+AGG - Chr3:103730336-103730355 None:intergenic 35.0%
CGGATTATTGTTGATGTCAT+TGG + Chr3:103729875-103729894 MsG0380018048.01.T01:intron 35.0%
CGTTTGAAAGTTAATGGGAT+TGG - Chr3:103729153-103729172 None:intergenic 35.0%
GAAAGTTAATGGGATTGGAT+TGG - Chr3:103729148-103729167 None:intergenic 35.0%
GATTTCAACAACTTACCATC+AGG + Chr3:103731312-103731331 MsG0380018048.01.T01:CDS 35.0%
GCAACATACCATATCAGAAT+TGG + Chr3:103730427-103730446 MsG0380018048.01.T01:intron 35.0%
GCTCTTATAAGTGGAAGATT+TGG - Chr3:103730972-103730991 None:intergenic 35.0%
GTAAGCAGTAGAGTCATATA+GGG - Chr3:103729459-103729478 None:intergenic 35.0%
GTTACAATTCTCCTTGAGAA+AGG - Chr3:103731578-103731597 None:intergenic 35.0%
TAAGCAGTAGAGTCATATAG+GGG - Chr3:103729458-103729477 None:intergenic 35.0%
TCAACTTTCTCTCTATGTAG+AGG + Chr3:103731473-103731492 MsG0380018048.01.T01:three_prime_UTR 35.0%
TCTAGTTATAATACCGATGG+GGG + Chr3:103729333-103729352 MsG0380018048.01.T01:intron 35.0%
TGTAAGCAGTAGAGTCATAT+AGG - Chr3:103729460-103729479 None:intergenic 35.0%
TGTTGAAATCATTGTCTGTG+AGG - Chr3:103731302-103731321 None:intergenic 35.0%
TTAAAAATGATTCCGTTGCC+GGG + Chr3:103729796-103729815 MsG0380018048.01.T01:intron 35.0%
! AGGTTCTAGTGAAGAAGTTA+AGG - Chr3:103731558-103731577 None:intergenic 35.0%
! ATTGTTGGTTGATTCTCCAT+TGG - Chr3:103730183-103730202 None:intergenic 35.0%
! CATAGCTTTTATGGGTTCTT+AGG + Chr3:103731407-103731426 MsG0380018048.01.T01:three_prime_UTR 35.0%
! CATGGTTCACATAGCTTTTA+TGG + Chr3:103731398-103731417 MsG0380018048.01.T01:three_prime_UTR 35.0%
! CTAGAGGACACATATTTTCT+GGG + Chr3:103730582-103730601 MsG0380018048.01.T01:intron 35.0%
! TCCTCTAGCTATGATTTTGT+TGG - Chr3:103730570-103730589 None:intergenic 35.0%
! TCTAGGATAGCTCTTATAAG+TGG - Chr3:103730981-103731000 None:intergenic 35.0%
! TTAATGGGATTGGATTGGAT+TGG - Chr3:103729143-103729162 None:intergenic 35.0%
!! GGTGTTTTTATGGATGGAAT+TGG + Chr3:103730924-103730943 MsG0380018048.01.T01:CDS 35.0%
!! GTGGATAAACTTTTCAAGAG+TGG + Chr3:103731342-103731361 MsG0380018048.01.T01:CDS 35.0%
!!! TCGTTTTGTTTTGTTGCAGA+TGG + Chr3:103729431-103729450 MsG0380018048.01.T01:intron 35.0%
AAATGACCAACATCCACGTT+TGG - Chr3:103730035-103730054 None:intergenic 40.0%
ACCCATGCAGGATTGTATTT+AGG - Chr3:103730613-103730632 None:intergenic 40.0%
ACCCTAAATACAATCCTGCA+TGG + Chr3:103730608-103730627 MsG0380018048.01.T01:intron 40.0%
AGCATTATCCCATTCACTGA+AGG - Chr3:103731241-103731260 None:intergenic 40.0%
ATATCACAAGGGAACAGAAC+AGG - Chr3:103729107-103729126 None:intergenic 40.0%
ATCCATCTCAGTAAGCCAAA+CGG - Chr3:103731027-103731046 None:intergenic 40.0%
ATGTATCAGACCCTAATGGA+AGG + Chr3:103730322-103730341 MsG0380018048.01.T01:intron 40.0%
ATTTATGTGGTTGGACATCC+TGG + Chr3:103728933-103728952 MsG0380018048.01.T01:CDS 40.0%
CACACTTGATCATGATACTC+AGG + Chr3:103731055-103731074 MsG0380018048.01.T01:CDS 40.0%
CACGTCAGCATATATAACGA+TGG - Chr3:103729909-103729928 None:intergenic 40.0%
CAGTGAATGGGATAATGCTT+TGG + Chr3:103731242-103731261 MsG0380018048.01.T01:CDS 40.0%
CATCGTTATATATGCTGACG+TGG + Chr3:103729907-103729926 MsG0380018048.01.T01:intron 40.0%
CCCATGCAGGATTGTATTTA+GGG - Chr3:103730612-103730631 None:intergenic 40.0%
CCCTAAATACAATCCTGCAT+GGG + Chr3:103730609-103730628 MsG0380018048.01.T01:intron 40.0%
CCTAACCAACTAGACTACAA+CGG + Chr3:103729855-103729874 MsG0380018048.01.T01:intron 40.0%
CTAGTGTTGCCAATTTGTCT+AGG - Chr3:103730998-103731017 None:intergenic 40.0%
CTGTCTCTATCAACTCTGAT+TGG + Chr3:103731603-103731622 MsG0380018048.01.T01:three_prime_UTR 40.0%
CTTCACTAGAACCTTTCTCA+AGG + Chr3:103731564-103731583 MsG0380018048.01.T01:three_prime_UTR 40.0%
GATTTCTACGAACAAAGGCT+TGG + Chr3:103730749-103730768 MsG0380018048.01.T01:intron 40.0%
GCATTATCCCATTCACTGAA+GGG - Chr3:103731240-103731259 None:intergenic 40.0%
GCCAACAAAATCATAGCTAG+AGG + Chr3:103730566-103730585 MsG0380018048.01.T01:intron 40.0%
GGATGTTGGTCATTTCTCAA+AGG + Chr3:103730040-103730059 MsG0380018048.01.T01:CDS 40.0%
GTCTAGTTGGTTAGGATACT+CGG - Chr3:103729850-103729869 None:intergenic 40.0%
GTCTGATACATGAACAGTGA+CGG - Chr3:103730313-103730332 None:intergenic 40.0%
GTTCATGTATCAGACCCTAA+TGG + Chr3:103730318-103730337 MsG0380018048.01.T01:intron 40.0%
TAAACAGCAGTACTAGTCCA+AGG + Chr3:103729264-103729283 MsG0380018048.01.T01:intron 40.0%
TATCACAAGGGAACAGAACA+GGG - Chr3:103729106-103729125 None:intergenic 40.0%
TGTTGGTCATTTCTCAAAGG+TGG + Chr3:103730043-103730062 MsG0380018048.01.T01:CDS 40.0%
TTGATCATGATACTCAGGTG+AGG + Chr3:103731060-103731079 MsG0380018048.01.T01:intron 40.0%
! ATTGGATTGGATTGGATTGG+AGG - Chr3:103729135-103729154 None:intergenic 40.0%
! GCTAGAGGACACATATTTTC+TGG + Chr3:103730581-103730600 MsG0380018048.01.T01:intron 40.0%
! TTTTAGCCAAACGTGGATGT+TGG + Chr3:103730026-103730045 MsG0380018048.01.T01:CDS 40.0%
!! ACTTTTCAAGAGTGGCAAAC+TGG + Chr3:103731350-103731369 MsG0380018048.01.T01:CDS 40.0%
!! AGAGTTGATAGAGACAGTTG+TGG - Chr3:103731600-103731619 None:intergenic 40.0%
!! TTGGAACAAGTATTGAGGGA+AGG + Chr3:103731205-103731224 MsG0380018048.01.T01:CDS 40.0%
AGCCATTTACTCACCACCAA+TGG + Chr3:103730164-103730183 MsG0380018048.01.T01:intron 45.0%
AGTCACAGTCACGTGAGATT+TGG + Chr3:103729007-103729026 MsG0380018048.01.T01:intron 45.0%
ATCACAAGGGAACAGAACAG+GGG - Chr3:103729105-103729124 None:intergenic 45.0%
CAACAACACCAACACGAACA+CGG + Chr3:103729651-103729670 MsG0380018048.01.T01:CDS 45.0%
CAACACTAGATCTTCCCGTT+TGG + Chr3:103731009-103731028 MsG0380018048.01.T01:CDS 45.0%
CAACTTACCATCAGGTGATG+TGG + Chr3:103731320-103731339 MsG0380018048.01.T01:CDS 45.0%
CATTGTCTGTGAGGCACATT+TGG - Chr3:103731293-103731312 None:intergenic 45.0%
CCGTTGTAGTCTAGTTGGTT+AGG - Chr3:103729858-103729877 None:intergenic 45.0%
CTCAGATGGTAAAGATCACG+TGG + Chr3:103730114-103730133 MsG0380018048.01.T01:intron 45.0%
GAAAGAAGAAGAACCCCCAT+CGG - Chr3:103729349-103729368 None:intergenic 45.0%
GAAGTAGGTTGCATCATCCT+TGG - Chr3:103729284-103729303 None:intergenic 45.0%
GCATGGGTTCTTAACCTTAC+AGG + Chr3:103730625-103730644 MsG0380018048.01.T01:intron 45.0%
GCGATAGCAAAGACCATTCT+TGG + Chr3:103730405-103730424 MsG0380018048.01.T01:intron 45.0%
GGGGGTTCTTCTTCTTTCTA+TGG + Chr3:103729351-103729370 MsG0380018048.01.T01:intron 45.0%
GTAAGGTTAAGAACCCATGC+AGG - Chr3:103730625-103730644 None:intergenic 45.0%
GTAGCATGTGAAGAAGAGCA+CGG + Chr3:103729059-103729078 MsG0380018048.01.T01:intron 45.0%
TCCATCTCAGTAAGCCAAAC+GGG - Chr3:103731026-103731045 None:intergenic 45.0%
TCTCACACCCTTCAGTGAAT+GGG + Chr3:103731230-103731249 MsG0380018048.01.T01:CDS 45.0%
TGACTCTACTGCTTACACTC+AGG + Chr3:103729463-103729482 MsG0380018048.01.T01:CDS 45.0%
TGGAGGAGGTGATATCACAA+GGG - Chr3:103729118-103729137 None:intergenic 45.0%
TTAGTTCACAACGCAAGACC+AGG - Chr3:103728954-103728973 None:intergenic 45.0%
TTATCCACCACATCACCTGA+TGG - Chr3:103731330-103731349 None:intergenic 45.0%
TTCTCACACCCTTCAGTGAA+TGG + Chr3:103731229-103731248 MsG0380018048.01.T01:CDS 45.0%
TTGGACAGCACTTCATCCAT+GGG + Chr3:103731261-103731280 MsG0380018048.01.T01:CDS 45.0%
TTGGAGGAGGTGATATCACA+AGG - Chr3:103729119-103729138 None:intergenic 45.0%
TTTGGACAGCACTTCATCCA+TGG + Chr3:103731260-103731279 MsG0380018048.01.T01:CDS 45.0%
! ATGGATGGAATTGGTCTCGA+GGG + Chr3:103730933-103730952 MsG0380018048.01.T01:CDS 45.0%
! CATCCAGAGAAGCCACTTTA+CGG + Chr3:103729595-103729614 MsG0380018048.01.T01:CDS 45.0%
! GCGTTGACGCTTATATCTCA+CGG + Chr3:103730880-103730899 MsG0380018048.01.T01:CDS 45.0%
! GGGATTGGATTGGATTGGAT+TGG - Chr3:103729138-103729157 None:intergenic 45.0%
! GTTGGTTGATTCTCCATTGG+TGG - Chr3:103730180-103730199 None:intergenic 45.0%
! TAGCATGTGAAGAAGAGCAC+GGG + Chr3:103729060-103729079 MsG0380018048.01.T01:intron 45.0%
! TAGTTGACTCTGCCTTCATG+AGG - Chr3:103730512-103730531 None:intergenic 45.0%
! TATGGATGGAATTGGTCTCG+AGG + Chr3:103730932-103730951 MsG0380018048.01.T01:CDS 45.0%
! TTTGCTATCGCAGAGCCAAT+AGG - Chr3:103730396-103730415 None:intergenic 45.0%
!! CTCCATTGGTGGTGAGTAAA+TGG - Chr3:103730169-103730188 None:intergenic 45.0%
!! GAAGGTATCACAGATGAGCA+TGG + Chr3:103731380-103731399 MsG0380018048.01.T01:exon 45.0%
CTACTGCTTACACTCAGGTG+AGG + Chr3:103729468-103729487 MsG0380018048.01.T01:intron 50.0%
CTTACCATCAGGTGATGTGG+TGG + Chr3:103731323-103731342 MsG0380018048.01.T01:CDS 50.0%
GTAGCTAGCTAGCTAGCTAG+AGG + Chr3:103731082-103731101 MsG0380018048.01.T01:intron 50.0%
TATGCCACAGAGCCTCATGA+AGG + Chr3:103730497-103730516 MsG0380018048.01.T01:intron 50.0%
TGACGTGGCTGCTACAGTAT+GGG + Chr3:103729922-103729941 MsG0380018048.01.T01:intron 50.0%
TGGACAGCACTTCATCCATG+GGG + Chr3:103731262-103731281 MsG0380018048.01.T01:CDS 50.0%
TGGCAAACTGGTCGTGTAGA+AGG + Chr3:103731362-103731381 MsG0380018048.01.T01:CDS 50.0%
! GGATTGGATTGGATTGGAGG+AGG - Chr3:103729132-103729151 None:intergenic 50.0%
! TCCCGTTTGGCTTACTGAGA+TGG + Chr3:103731022-103731041 MsG0380018048.01.T01:CDS 50.0%
!! GGGACAGTTTTAGCCAAACG+TGG + Chr3:103730019-103730038 MsG0380018048.01.T01:CDS 50.0%
AACAGAACAGGGGACCAGTG+AGG - Chr3:103729095-103729114 None:intergenic 55.0%
ACAGGGGACCAGTGAGGAAT+AGG - Chr3:103729089-103729108 None:intergenic 55.0%
ACGGGCATCCTATTCCTCAC+TGG + Chr3:103729078-103729097 MsG0380018048.01.T01:intron 55.0%
AGGTGAAGCCGTGTTCGTGT+TGG - Chr3:103729662-103729681 None:intergenic 55.0%
CCACCGTAAAGTGGCTTCTC+TGG - Chr3:103729601-103729620 None:intergenic 55.0%
CTGACGTGGCTGCTACAGTA+TGG + Chr3:103729921-103729940 MsG0380018048.01.T01:intron 55.0%
GGCTGCTACAGTATGGGTGA+AGG + Chr3:103729928-103729947 MsG0380018048.01.T01:intron 55.0%
TCTGCCTTCATGAGGCTCTG+TGG - Chr3:103730504-103730523 None:intergenic 55.0%
! AAGCCACTTTACGGTGGAGG+AGG + Chr3:103729604-103729623 MsG0380018048.01.T01:CDS 55.0%
! CCAGAGAAGCCACTTTACGG+TGG + Chr3:103729598-103729617 MsG0380018048.01.T01:CDS 55.0%
! GAGAAGCCACTTTACGGTGG+AGG + Chr3:103729601-103729620 MsG0380018048.01.T01:CDS 55.0%
! GCACATTTGGTAGCACCCCA+TGG - Chr3:103731280-103731299 None:intergenic 55.0%
AGAGACCCGGGTTCAAGTCC+CGG - Chr3:103729817-103729836 None:intergenic 60.0%
CCACTTTACGGTGGAGGAGG+AGG + Chr3:103729607-103729626 MsG0380018048.01.T01:CDS 60.0%
CCTCCTCCTCCACCGTAAAG+TGG - Chr3:103729610-103729629 None:intergenic 60.0%
GACTTGAACCCGGGTCTCTC+GGG + Chr3:103729818-103729837 MsG0380018048.01.T01:intron 60.0%
GGACTTGAACCCGGGTCTCT+CGG + Chr3:103729817-103729836 MsG0380018048.01.T01:intron 60.0%
CCGGGTTCAAGTCCCGGCAA+CGG - Chr3:103729811-103729830 None:intergenic 65.0%
CCGTTGCCGGGACTTGAACC+CGG + Chr3:103729808-103729827 MsG0380018048.01.T01:intron 65.0%
CGTTGCCGGGACTTGAACCC+GGG + Chr3:103729809-103729828 MsG0380018048.01.T01:intron 65.0%
CGGCTCTCACCCGAGAGACC+CGG - Chr3:103729830-103729849 None:intergenic 70.0%
GGCTCTCACCCGAGAGACCC+GGG - Chr3:103729829-103729848 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103728928 103731730 103728928 ID=MsG0380018048.01;Name=MsG0380018048.01
Chr3 mRNA 103728928 103731730 103728928 ID=MsG0380018048.01.T01;Parent=MsG0380018048.01;Name=MsG0380018048.01.T01;_AED=0.50;_eAED=0.54;_QI=0|0.6|0.5|1|0.6|0.66|6|334|291
Chr3 exon 103728928 103729018 103728928 ID=MsG0380018048.01.T01:exon:30845;Parent=MsG0380018048.01.T01
Chr3 exon 103729450 103729484 103729450 ID=MsG0380018048.01.T01:exon:30846;Parent=MsG0380018048.01.T01
Chr3 exon 103729586 103729730 103729586 ID=MsG0380018048.01.T01:exon:30847;Parent=MsG0380018048.01.T01
Chr3 exon 103729939 103730121 103729939 ID=MsG0380018048.01.T01:exon:30848;Parent=MsG0380018048.01.T01
Chr3 exon 103730856 103731076 103730856 ID=MsG0380018048.01.T01:exon:30849;Parent=MsG0380018048.01.T01
Chr3 exon 103731196 103731730 103731196 ID=MsG0380018048.01.T01:exon:30850;Parent=MsG0380018048.01.T01
Chr3 CDS 103728928 103729018 103728928 ID=MsG0380018048.01.T01:cds;Parent=MsG0380018048.01.T01
Chr3 CDS 103729450 103729484 103729450 ID=MsG0380018048.01.T01:cds;Parent=MsG0380018048.01.T01
Chr3 CDS 103729586 103729730 103729586 ID=MsG0380018048.01.T01:cds;Parent=MsG0380018048.01.T01
Chr3 CDS 103729939 103730121 103729939 ID=MsG0380018048.01.T01:cds;Parent=MsG0380018048.01.T01
Chr3 CDS 103730856 103731076 103730856 ID=MsG0380018048.01.T01:cds;Parent=MsG0380018048.01.T01
Chr3 CDS 103731196 103731396 103731196 ID=MsG0380018048.01.T01:cds;Parent=MsG0380018048.01.T01
Chr3 three_prime_UTR 103731397 103731730 103731397 ID=MsG0380018048.01.T01:three_prime_utr;Parent=MsG0380018048.01.T01
Gene Sequence

>MsG0380018048.01.T01

ATGATATTTATGTGGTTGGACATCCTGGTCTTGCGTTGTGAACTAAGTGATGTTAATCTGGTAATGATATTTGTTTCTCAGTCACAGTCACATGGACCCCTATATGACTCTACTGCTTACACTCAGTGCAAAGAGCATCCAGAGAAGCCACTTTACGGTGGAGGAGGAGGAGTTTTCAATATCAAGTTTAACAACAACACCAACACGAACACGGCTTCACCTTCACTTGTCTTCTATAATCTTACTTACGACACTATCTATTCTTTTTCTGTATGGGTGAAGGTTGAAGATACAGATTCAGTTATGATAAAGGCAAGGCTAGAAACAGAAAATGAGACATATAACTGTATTGGGACAGTTTTAGCCAAACGTGGATGTTGGTCATTTCTCAAAGGTGGATTTGTTCTCAATTCTCCTTCAAATTCATCTACCATCTTCTTTCACAACTCAGATGAAACGTGCAATGATGTAAATTCTAGCGTTGACGCTTATATCTCACGGATAAGAGAACTAAGACAATATGGTGTTTTTATGGATGGAATTGGTCTCGAGGGTCACTTCACAATACCAAATCTTCCACTTATAAGAGCTATCCTAGACAAATTGGCAACACTAGATCTTCCCGTTTGGCTTACTGAGATGGATATAAGCAACACACTTGATCATGATACTCAGGCAATTTATTTGGAACAAGTATTGAGGGAAGGATTCTCACACCCTTCAGTGAATGGGATAATGCTTTGGACAGCACTTCATCCATGGGGTGCTACCAAATGTGCCTCACAGACAATGATTTCAACAACTTACCATCAGGTGATGTGGTGGATAAACTTTTCAAGAGTGGCAAACTGGTCGTGTAGAAGGTATCACAGATGA
Protein sequence

>MsG0380018048.01.T01

MIFMWLDILVLRCELSDVNLVMIFVSQSQSHGPLYDSTAYTQCKEHPEKPLYGGGGGVFNIKFNNNTNTNTASPSLVFYNLTYDTIYSFSVWVKVEDTDSVMIKARLETENETYNCIGTVLAKRGCWSFLKGGFVLNSPSNSSTIFFHNSDETCNDVNSSVDAYISRIRELRQYGVFMDGIGLEGHFTIPNLPLIRAILDKLATLDLPVWLTEMDISNTLDHDTQAIYLEQVLREGFSHPSVNGIMLWTALHPWGATKCASQTMISTTYHQVMWWINFSRVANWSCRRYHR*