AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045101.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045101.01.T01 MTR_8g064990 86.061 330 8 3 1 330 1 292 0.0 566
MsG0880045101.01.T01 MTR_8g064990 84.739 249 5 2 82 330 3 218 1.47e-148 420
MsG0880045101.01.T01 MTR_8g062580 91.304 46 4 0 283 328 8 53 1.09e-20 90.5
MsG0880045101.01.T01 MTR_4g122220 30.165 242 123 5 81 318 14 213 1.55e-18 84.7
MsG0880045101.01.T01 MTR_8g062585 53.947 76 7 1 160 235 30 77 3.05e-18 79.0
MsG0880045101.01.T01 MTR_3g085700 24.900 249 152 6 66 310 2 219 3.36e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045101.01.T01 AT1G60550 69.048 336 63 6 1 330 1 301 2.74e-160 452
MsG0880045101.01.T01 AT4G16800 25.210 238 142 3 82 318 54 256 1.83e-16 79.3

Find 97 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCCAGTTGGTTTCCTTCA+TGG 0.214223 8:+54223788 None:intergenic
ATTTGACAAATTGAACTCTT+TGG 0.216846 8:+54223767 None:intergenic
ACCATTGCAATTACTGGTTT+TGG 0.240337 8:+54225487 None:intergenic
GGCTGTTGAAGCAGAGAAAA+TGG 0.259099 8:-54224968 MsG0880045101.01.T01:CDS
CCTTAATGTGTTAGACTTGC+AGG 0.280510 8:-54226051 MsG0880045101.01.T01:intron
GATAGTACCATTGCAATTAC+TGG 0.296354 8:+54225481 None:intergenic
TTTGACAAATTGAACTCTTT+GGG 0.308145 8:+54223768 None:intergenic
GCAGCAGATAATGCTATCTT+TGG 0.320415 8:-54225322 MsG0880045101.01.T01:CDS
TTCCTTCTCATGATGTTGTT+TGG 0.337790 8:-54227163 MsG0880045101.01.T01:CDS
TCAAGTTACCAACGTGTTCA+TGG 0.366573 8:-54227191 MsG0880045101.01.T01:CDS
TTGGTTTCCTTCATGGTGTC+AGG 0.367948 8:+54223795 None:intergenic
TGACGGGCACGCTGGACTTC+AGG 0.368255 8:-54224491 MsG0880045101.01.T01:intron
AATGCTATCTTTGGCCAAAC+TGG 0.368332 8:-54225313 MsG0880045101.01.T01:CDS
CCTGCAAGTCTAACACATTA+AGG 0.368951 8:+54226051 None:intergenic
GCAGGGTATGCTGTTGGAGG+AGG 0.377182 8:-54225379 MsG0880045101.01.T01:CDS
AAATAGCCCAACCGCAATTC+GGG 0.383989 8:-54224542 MsG0880045101.01.T01:CDS
GGGAGCTTTGATGCTGGTTA+TGG 0.384393 8:-54225154 MsG0880045101.01.T01:CDS
GTTTCTCACAAGGTTCTATA+CGG 0.403885 8:-54224989 MsG0880045101.01.T01:CDS
CTAACATTAACACAGGTTGC+AGG 0.410643 8:-54225397 MsG0880045101.01.T01:CDS
TATTCTGATCATGAAAATAT+CGG 0.418618 8:-54226077 MsG0880045101.01.T01:CDS
ATCATCATCTTCAATGTCAT+TGG 0.421137 8:-54227365 MsG0880045101.01.T01:five_prime_UTR
CCATTGGAGAAATGAGCTAT+AGG 0.421367 8:+54227330 None:intergenic
GAAATAGCCCAACCGCAATT+CGG 0.424489 8:-54224543 MsG0880045101.01.T01:CDS
GAAGCACCTTAGGACCAGTT+TGG 0.426368 8:+54225299 None:intergenic
AGGAGGGCATATATTGCATA+TGG 0.429416 8:-54225362 MsG0880045101.01.T01:CDS
TTCTCATGATGTTGTTTGGA+AGG 0.432166 8:-54227159 MsG0880045101.01.T01:CDS
ATGTCTTTGTTGTTTGCCAT+TGG 0.466222 8:+54227314 None:intergenic
TTGAGAACCCGAATTGCGGT+TGG 0.473250 8:+54224535 None:intergenic
CGAAAAGCATTCCTTCTCTC+AGG 0.474072 8:+54226840 None:intergenic
CTATTAATGCAGTGGATGAC+GGG 0.487601 8:-54224507 MsG0880045101.01.T01:CDS
AAGTTCTATCATGTCACGTT+TGG 0.491658 8:-54225131 MsG0880045101.01.T01:CDS
CTGGTACAACAGTATTGATA+AGG 0.497909 8:+54224944 None:intergenic
GCTATTAATGCAGTGGATGA+CGG 0.498064 8:-54224508 MsG0880045101.01.T01:CDS
TGAGAACCCGAATTGCGGTT+GGG 0.503855 8:+54224536 None:intergenic
AAGAAACAATCAAATGGTGT+AGG 0.506674 8:-54224576 MsG0880045101.01.T01:CDS
ACACCATGAAGGAAACCAAC+TGG 0.508799 8:-54223791 MsG0880045101.01.T01:CDS
AAATAATTTGCAGCTGCAGA+AGG 0.510989 8:+54225421 None:intergenic
TCATGATCAGAATAACCATC+TGG 0.512939 8:+54226086 None:intergenic
TGGTTAACCATGTGCTTGGA+TGG 0.517826 8:-54223851 MsG0880045101.01.T01:CDS
CTTTGGCCAAACTGGTCCTA+AGG 0.517904 8:-54225305 MsG0880045101.01.T01:intron
ATTGAACTCTTTGGGCCAGT+TGG 0.522947 8:+54223776 None:intergenic
TTGATGTTGGAGAGGAAACA+AGG 0.525526 8:+54227252 None:intergenic
CTTGGCAATTCCTTCACCAA+CGG 0.525754 8:+54227079 None:intergenic
GCTGTTGAAGCAGAGAAAAT+GGG 0.526704 8:-54224967 MsG0880045101.01.T01:CDS
TTCAGATGATGATGAAGGAA+AGG 0.527599 8:-54227129 MsG0880045101.01.T01:CDS
TCAGGTCCTGCTTCATCAAG+TGG 0.528614 8:+54223813 None:intergenic
GTTGGTGTCATCATTCTCAC+TGG 0.529021 8:-54226759 MsG0880045101.01.T01:CDS
ATTCCTTCAGATGATGATGA+AGG 0.536133 8:-54227134 MsG0880045101.01.T01:CDS
TGGAGAGGAAACAAGGTGGT+TGG 0.539271 8:+54227259 None:intergenic
GGTGGTGGTGATATTGATGT+TGG 0.539487 8:+54227239 None:intergenic
AACCGCAATTCGGGTTCTCA+AGG 0.543466 8:-54224533 MsG0880045101.01.T01:CDS
ATCCAAGCACATGGTTAACC+AGG 0.546556 8:+54223853 None:intergenic
AGAAACAATCAAATGGTGTA+GGG 0.550444 8:-54224575 MsG0880045101.01.T01:CDS
TTTCCTTCATCATCATCTGA+AGG 0.551061 8:+54227131 None:intergenic
AAGGTTGGGAGCTTTGATGC+TGG 0.551127 8:-54225160 MsG0880045101.01.T01:CDS
CAGGTTGCAGGGTATGCTGT+TGG 0.551508 8:-54225385 MsG0880045101.01.T01:CDS
AGCCTGGTTAACCATGTGCT+TGG 0.553805 8:-54223855 MsG0880045101.01.T01:CDS
CAGGGTATGCTGTTGGAGGA+GGG 0.554607 8:-54225378 MsG0880045101.01.T01:CDS
CATCTGGAGTCCTCAAGGCT+TGG 0.556853 8:+54226102 None:intergenic
GATAGCATTATCTGCTGCAA+TGG 0.558797 8:+54225327 None:intergenic
CCTATAGCTCATTTCTCCAA+TGG 0.563998 8:-54227330 MsG0880045101.01.T01:exon
TCAAGACCACTTGATGAAGC+AGG 0.566785 8:-54223819 MsG0880045101.01.T01:CDS
TATGAGAAATCCGTTGGTGA+AGG 0.569437 8:-54227089 MsG0880045101.01.T01:CDS
TAACATTAACACAGGTTGCA+GGG 0.569695 8:-54225396 MsG0880045101.01.T01:CDS
GTTGCAGGGTATGCTGTTGG+AGG 0.577134 8:-54225382 MsG0880045101.01.T01:CDS
GCTAGAGATGATCCCTCTGT+TGG 0.578549 8:-54226777 MsG0880045101.01.T01:CDS
CTATCATGTCACGTTTGGTG+AGG 0.584744 8:-54225126 MsG0880045101.01.T01:CDS
GGTTAACCATGTGCTTGGAT+GGG 0.585915 8:-54223850 MsG0880045101.01.T01:CDS
ATAACCATCTGGAGTCCTCA+AGG 0.585989 8:+54226097 None:intergenic
AAGGAAATAAGTTGAGGTGG+TGG 0.591859 8:+54227224 None:intergenic
ATTGAAGATGATGATGATGA+TGG 0.595058 8:+54227373 None:intergenic
GTGAAATGTGGTTTCTCACA+AGG 0.596317 8:-54224999 MsG0880045101.01.T01:CDS
GGAACAGATGCGTTCTGTAG+TGG 0.596532 8:-54226131 MsG0880045101.01.T01:CDS
CGTTGGTGAAGGAATTGCCA+AGG 0.597323 8:-54227078 MsG0880045101.01.T01:intron
CAAGGCAGCTATTAATGCAG+TGG 0.600034 8:-54224515 MsG0880045101.01.T01:CDS
TGTCATCATTCTCACTGGAA+AGG 0.600797 8:-54226754 MsG0880045101.01.T01:intron
TTCCAAACAACATCATGAGA+AGG 0.606798 8:+54227161 None:intergenic
TGCCTTGAGAACCCGAATTG+CGG 0.609132 8:+54224531 None:intergenic
GCAGTGGATGACGGGCACGC+TGG 0.611049 8:-54224499 MsG0880045101.01.T01:CDS
CACAAGGAAATAAGTTGAGG+TGG 0.624126 8:+54227221 None:intergenic
TTATTTGCTAACATTAACAC+AGG 0.624961 8:-54225404 MsG0880045101.01.T01:CDS
AGCAGGACCTGACACCATGA+AGG 0.628502 8:-54223802 MsG0880045101.01.T01:CDS
AGAATGATGACACCAACAGA+GGG 0.629795 8:+54226765 None:intergenic
CAAGCCTTGAGGACTCCAGA+TGG 0.630119 8:-54226101 MsG0880045101.01.T01:CDS
TCCAAAACCAGTAATTGCAA+TGG 0.632257 8:-54225488 MsG0880045101.01.T01:CDS
GAGAATGATGACACCAACAG+AGG 0.638786 8:+54226764 None:intergenic
ATCAGCTCCTTAATCGTGTG+AGG 0.645905 8:+54226816 None:intergenic
GTATTAATAGGCCTGAGAGA+AGG 0.646223 8:-54226851 MsG0880045101.01.T01:CDS
TGACACAAGGAAATAAGTTG+AGG 0.649038 8:+54227218 None:intergenic
ATTGTCTATGAGAAATCCGT+TGG 0.649414 8:-54227095 MsG0880045101.01.T01:CDS
TCAACTCCCATCCAAGCACA+TGG 0.655972 8:+54223844 None:intergenic
ACAGATGCGTTCTGTAGTGG+TGG 0.672100 8:-54226128 MsG0880045101.01.T01:CDS
TGGTGATATTGATGTTGGAG+AGG 0.678621 8:+54227244 None:intergenic
GTAACTTGAAGTGTGACACA+AGG 0.684211 8:+54227205 None:intergenic
GAACATCACCATGAACACGT+TGG 0.725959 8:+54227183 None:intergenic
ATGTTGGAGAGGAAACAAGG+TGG 0.769684 8:+54227255 None:intergenic
GTGGTGGTGACCAAGCCTTG+AGG 0.785466 8:-54226112 MsG0880045101.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAATAACTTCAAATA+TGG + Chr8:54224192-54224211 None:intergenic 10.0%
!!! ATATATTGTCTTTAAAATTA+TGG - Chr8:54225359-54225378 MsG0880045101.01.T01:CDS 10.0%
!!! TTAATTTTTGTTATCAATTT+GGG - Chr8:54226953-54226972 MsG0880045101.01.T01:intron 10.0%
!! TACAAATGTTAAAATGAAAA+TGG + Chr8:54225871-54225890 None:intergenic 15.0%
!! TATTAAACTTAGAAAAATCT+GGG + Chr8:54226892-54226911 None:intergenic 15.0%
!! TTACAAAACAATAAAGTAAA+TGG + Chr8:54224426-54224445 None:intergenic 15.0%
!!! AATTCAACATTGATATTTTA+TGG - Chr8:54226818-54226837 MsG0880045101.01.T01:CDS 15.0%
!!! GTTAATTTTTGTTATCAATT+TGG - Chr8:54226952-54226971 MsG0880045101.01.T01:intron 15.0%
!!! TATAAATGCTTTTGAAATTA+TGG + Chr8:54226920-54226939 None:intergenic 15.0%
!! ATCTATAGAATAAACTGATT+TGG - Chr8:54226989-54227008 MsG0880045101.01.T01:intron 20.0%
!! CTATTAAACTTAGAAAAATC+TGG + Chr8:54226893-54226912 None:intergenic 20.0%
!! TAGAAAAAGAAACAATCAAA+TGG - Chr8:54226553-54226572 MsG0880045101.01.T01:intron 20.0%
!! TATTCTGATCATGAAAATAT+CGG - Chr8:54225058-54225077 MsG0880045101.01.T01:intron 20.0%
!! TTATGTCAATTATAGGAAAT+GGG - Chr8:54226791-54226810 MsG0880045101.01.T01:CDS 20.0%
!! TTTATGTCAATTATAGGAAA+TGG - Chr8:54226790-54226809 MsG0880045101.01.T01:CDS 20.0%
!!! AAGCACATTTTTTTATCTTT+TGG + Chr8:54226087-54226106 None:intergenic 20.0%
!!! AATGATATATTGATGATGTA+GGG - Chr8:54224983-54225002 MsG0880045101.01.T01:CDS 20.0%
!!! ACAATATATCAGTTTTTCAT+TGG + Chr8:54225348-54225367 None:intergenic 20.0%
!!! ATTTTTCTCATTACAAATCA+TGG + Chr8:54225529-54225548 None:intergenic 20.0%
!!! CATTATTAAACTTGTTTTAG+TGG - Chr8:54226672-54226691 MsG0880045101.01.T01:intron 20.0%
!!! GTTGTTTTTATGTCAATTAT+AGG - Chr8:54226784-54226803 MsG0880045101.01.T01:CDS 20.0%
!!! TAATGATATATTGATGATGT+AGG - Chr8:54224982-54225001 MsG0880045101.01.T01:CDS 20.0%
!!! TAATTTTAGTTTCTCCTTTA+AGG - Chr8:54226254-54226273 MsG0880045101.01.T01:intron 20.0%
!!! TAGAAAAATCTGGAATAAAT+CGG + Chr8:54225116-54225135 None:intergenic 20.0%
!!! TTTTGCAGATTAGTATTAAT+AGG - Chr8:54224272-54224291 MsG0880045101.01.T01:intron 20.0%
! AAAAAGAAAACACTCTTTGA+AGG - Chr8:54227230-54227249 MsG0880045101.01.T01:CDS 25.0%
! AAGCAAAAAGAAAATGAGAA+AGG + Chr8:54224094-54224113 None:intergenic 25.0%
! AATTCCAAACATAACCTTAA+AGG + Chr8:54226271-54226290 None:intergenic 25.0%
! AATTTGAGGACTAAATTAAC+CGG + Chr8:54225287-54225306 None:intergenic 25.0%
! ATAATGATTGGATTAACAAG+TGG + Chr8:54224493-54224512 None:intergenic 25.0%
! ATTTGACAAATTGAACTCTT+TGG + Chr8:54227371-54227390 None:intergenic 25.0%
! GAGACTGTTTGTATAATTTA+GGG - Chr8:54224225-54224244 MsG0880045101.01.T01:intron 25.0%
! TCAAATATGGCAATTCAAAA+TGG + Chr8:54224179-54224198 None:intergenic 25.0%
! TCTACTAAATTAGAGAACAT+TGG + Chr8:54225414-54225433 None:intergenic 25.0%
! TGAGACTGTTTGTATAATTT+AGG - Chr8:54224224-54224243 MsG0880045101.01.T01:intron 25.0%
! TGCTGATAAAATAAAACCAA+TGG + Chr8:54224606-54224625 None:intergenic 25.0%
! TTCACACAAATAGAAAAATC+TGG + Chr8:54225126-54225145 None:intergenic 25.0%
! TTCATTATCATTGTATTGCA+TGG - Chr8:54226433-54226452 MsG0880045101.01.T01:intron 25.0%
! TTTCTCAAACAACATTATAC+TGG + Chr8:54225232-54225251 None:intergenic 25.0%
! TTTGACAAATTGAACTCTTT+GGG + Chr8:54227370-54227389 None:intergenic 25.0%
!! ACTAGTTGTATGATAATGAT+TGG + Chr8:54224505-54224524 None:intergenic 25.0%
!! TTATTTGCTAACATTAACAC+AGG - Chr8:54225731-54225750 MsG0880045101.01.T01:intron 25.0%
!!! ATTGTTATTTCTCCAATTTG+AGG - Chr8:54225438-54225457 MsG0880045101.01.T01:CDS 25.0%
!!! GTATCTCTTTGTTATTTTTG+AGG - Chr8:54225170-54225189 MsG0880045101.01.T01:intron 25.0%
!!! GTTAATGCAATGTTTTGATT+TGG - Chr8:54226515-54226534 MsG0880045101.01.T01:intron 25.0%
!!! TTGTTATTTCTCCAATTTGA+GGG - Chr8:54225439-54225458 MsG0880045101.01.T01:CDS 25.0%
AAAAATGTGCTTCTCAATAC+AGG - Chr8:54226095-54226114 MsG0880045101.01.T01:CDS 30.0%
AAAATTATGGTGCTTGATTC+TGG - Chr8:54225372-54225391 MsG0880045101.01.T01:CDS 30.0%
AAAGAGATACCTTGAGTAAT+GGG + Chr8:54225160-54225179 None:intergenic 30.0%
AACCATTCAATTCTGCATTA+AGG + Chr8:54224961-54224980 None:intergenic 30.0%
AAGAAACAATCAAATGGTGT+AGG - Chr8:54226559-54226578 MsG0880045101.01.T01:intron 30.0%
AGAAACAATCAAATGGTGTA+GGG - Chr8:54226560-54226579 MsG0880045101.01.T01:intron 30.0%
AGATGTTACAAAAGACGAAA+AGG + Chr8:54225939-54225958 None:intergenic 30.0%
AGGAGAAACTAAAATTACAG+TGG + Chr8:54226251-54226270 None:intergenic 30.0%
ATACCATGATGATATAGCTA+TGG + Chr8:54227257-54227276 None:intergenic 30.0%
ATATGCATACATATGCTCTA+AGG + Chr8:54226759-54226778 None:intergenic 30.0%
ATCATATGATGCTTTCAGTA+CGG - Chr8:54224708-54224727 MsG0880045101.01.T01:intron 30.0%
ATCATCATCTTCAATGTCAT+TGG - Chr8:54223770-54223789 MsG0880045101.01.T01:CDS 30.0%
ATCCTTAATGCAGAATTGAA+TGG - Chr8:54224956-54224975 MsG0880045101.01.T01:CDS 30.0%
ATGTTACAAAAGACGAAAAG+GGG + Chr8:54225937-54225956 None:intergenic 30.0%
CAAAAAGAAAATGAGAAAGG+TGG + Chr8:54224091-54224110 None:intergenic 30.0%
GATGTTACAAAAGACGAAAA+GGG + Chr8:54225938-54225957 None:intergenic 30.0%
TAAGTCACATGACAAGTTAA+TGG + Chr8:54224531-54224550 None:intergenic 30.0%
TATGCATACATATGCTCTAA+GGG + Chr8:54226758-54226777 None:intergenic 30.0%
TCAGTTCATGTTAGTATTTG+AGG - Chr8:54227016-54227035 MsG0880045101.01.T01:intron 30.0%
TCATGAAATGATCAACTTGA+TGG - Chr8:54224662-54224681 MsG0880045101.01.T01:intron 30.0%
! ATTGGTTTCAACTGATGTTA+GGG + Chr8:54225330-54225349 None:intergenic 30.0%
! ATTTTTCTGTGTGTATCAGT+CGG - Chr8:54227100-54227119 MsG0880045101.01.T01:CDS 30.0%
! GTCTAAGTTGAAGAAATGTT+GGG - Chr8:54224247-54224266 MsG0880045101.01.T01:intron 30.0%
! GTTTTCAAAACCAAACCATA+CGG - Chr8:54224743-54224762 MsG0880045101.01.T01:intron 30.0%
! TCATTCTTTTCTCCTATTAC+AGG - Chr8:54225608-54225627 MsG0880045101.01.T01:intron 30.0%
! TCTTGTCTTTGTATCGATAA+AGG - Chr8:54225956-54225975 MsG0880045101.01.T01:intron 30.0%
! TCTTTGTATCGATAAAGGTT+GGG - Chr8:54225961-54225980 MsG0880045101.01.T01:intron 30.0%
! TTACAATTTGACGGACAAAA+AGG + Chr8:54225261-54225280 None:intergenic 30.0%
! TTTGTTATCAATTTGGGACA+TGG - Chr8:54226959-54226978 MsG0880045101.01.T01:intron 30.0%
! TTTTGTCCGTCAAATTGTAA+GGG - Chr8:54225261-54225280 MsG0880045101.01.T01:intron 30.0%
! TTTTTGTCCGTCAAATTGTA+AGG - Chr8:54225260-54225279 MsG0880045101.01.T01:intron 30.0%
!! TTATTTTATAGGGCATGTTG+AGG - Chr8:54224449-54224468 MsG0880045101.01.T01:intron 30.0%
!! TTCTCCTTTAAGGTTATGTT+TGG - Chr8:54226264-54226283 MsG0880045101.01.T01:intron 30.0%
!! TTGTTTTGTTCAAGTGACTT+TGG - Chr8:54224575-54224594 MsG0880045101.01.T01:CDS 30.0%
!!! TTTTGAGGCATTCATTTCAA+TGG - Chr8:54225185-54225204 MsG0880045101.01.T01:intron 30.0%
AAAGTGATTCCCATTACTCA+AGG - Chr8:54225148-54225167 MsG0880045101.01.T01:CDS 35.0%
AAGAAAATGAGAAAGGTGGA+AGG + Chr8:54224087-54224106 None:intergenic 35.0%
AAGTTCTATCATGTCACGTT+TGG - Chr8:54226004-54226023 MsG0880045101.01.T01:intron 35.0%
AATCGCTATCGATATGAGTT+AGG - Chr8:54227196-54227215 MsG0880045101.01.T01:CDS 35.0%
ACTATTACTCTCTCTTAGCT+AGG - Chr8:54224152-54224171 MsG0880045101.01.T01:intron 35.0%
AGTGACTTTGGATATTCCAT+TGG - Chr8:54224587-54224606 MsG0880045101.01.T01:CDS 35.0%
ATTGTCTATGAGAAATCCGT+TGG - Chr8:54224040-54224059 MsG0880045101.01.T01:intron 35.0%
CAAAGAGATACCTTGAGTAA+TGG + Chr8:54225161-54225180 None:intergenic 35.0%
GATAGTACCATTGCAATTAC+TGG + Chr8:54225657-54225676 None:intergenic 35.0%
GTCTTAAGTGACAAACTACA+TGG + Chr8:54224929-54224948 None:intergenic 35.0%
GTGCACAAAAAAGTGAGATT+TGG + Chr8:54225690-54225709 None:intergenic 35.0%
GTTTCTCACAAGGTTCTATA+CGG - Chr8:54226146-54226165 MsG0880045101.01.T01:intron 35.0%
TAACATTAACACAGGTTGCA+GGG - Chr8:54225739-54225758 MsG0880045101.01.T01:intron 35.0%
TAGTCCTCAAATTCACGAAA+TGG - Chr8:54225294-54225313 MsG0880045101.01.T01:intron 35.0%
TCATGATCAGAATAACCATC+TGG + Chr8:54225052-54225071 None:intergenic 35.0%
TCCAAAACCAGTAATTGCAA+TGG - Chr8:54225647-54225666 MsG0880045101.01.T01:intron 35.0%
TGAAGGAAAAACCGCATATA+TGG - Chr8:54226856-54226875 MsG0880045101.01.T01:CDS 35.0%
TGACACAAGGAAATAAGTTG+AGG + Chr8:54223920-54223939 None:intergenic 35.0%
TGAGTGTTCTATGAATGGAA+TGG + Chr8:54226228-54226247 None:intergenic 35.0%
TGTCAATTATAGGAAATGGG+TGG - Chr8:54226794-54226813 MsG0880045101.01.T01:CDS 35.0%
TTCCAAACAACATCATGAGA+AGG + Chr8:54223977-54223996 None:intergenic 35.0%
TTCCTTCTCATGATGTTGTT+TGG - Chr8:54223972-54223991 MsG0880045101.01.T01:intron 35.0%
TTGGTTTCAACTGATGTTAG+GGG + Chr8:54225329-54225348 None:intergenic 35.0%
TTTCATGACAAGTGACAACA+TGG + Chr8:54224650-54224669 None:intergenic 35.0%
TTTCCTTCATCATCATCTGA+AGG + Chr8:54224007-54224026 None:intergenic 35.0%
! AAATAATTTGCAGCTGCAGA+AGG + Chr8:54225717-54225736 None:intergenic 35.0%
! ATTCCTTCAGATGATGATGA+AGG - Chr8:54224001-54224020 MsG0880045101.01.T01:intron 35.0%
! ATTGCCATTTCGTGAATTTG+AGG + Chr8:54225301-54225320 None:intergenic 35.0%
! CTAAAAAAGCACGTGAAATG+TGG - Chr8:54226124-54226143 MsG0880045101.01.T01:CDS 35.0%
! GCAAATTATTGAAGCACCTT+AGG + Chr8:54225849-54225868 None:intergenic 35.0%
! GGTCTAAGTTGAAGAAATGT+TGG - Chr8:54224246-54224265 MsG0880045101.01.T01:intron 35.0%
! GTCTTTGTATCGATAAAGGT+TGG - Chr8:54225960-54225979 MsG0880045101.01.T01:intron 35.0%
! TTCAGATGATGATGAAGGAA+AGG - Chr8:54224006-54224025 MsG0880045101.01.T01:intron 35.0%
! TTCATGTTAGTATTTGAGGC+TGG - Chr8:54227020-54227039 MsG0880045101.01.T01:intron 35.0%
! TTCTCATGATGTTGTTTGGA+AGG - Chr8:54223976-54223995 MsG0880045101.01.T01:intron 35.0%
!! ATGTCTTTGTTGTTTGCCAT+TGG + Chr8:54223824-54223843 None:intergenic 35.0%
!! CATTGGTTTCAACTGATGTT+AGG + Chr8:54225331-54225350 None:intergenic 35.0%
!! CTGGTACAACAGTATTGATA+AGG + Chr8:54226194-54226213 None:intergenic 35.0%
!!! ACCATTGCAATTACTGGTTT+TGG + Chr8:54225651-54225670 None:intergenic 35.0%
!!! CACATTTCACGTGCTTTTTT+AGG + Chr8:54226126-54226145 None:intergenic 35.0%
!!! TTGCAATTACTGGTTTTGGA+AGG + Chr8:54225647-54225666 None:intergenic 35.0%
AATGCTATCTTTGGCCAAAC+TGG - Chr8:54225822-54225841 MsG0880045101.01.T01:intron 40.0%
AGAATGATGACACCAACAGA+GGG + Chr8:54224373-54224392 None:intergenic 40.0%
AGTGGTGAGTGTTCTATGAA+TGG + Chr8:54226233-54226252 None:intergenic 40.0%
ATGTGCTTCTCAATACAGGT+AGG - Chr8:54226099-54226118 MsG0880045101.01.T01:CDS 40.0%
CCATTGGAGAAATGAGCTAT+AGG + Chr8:54223808-54223827 None:intergenic 40.0%
CCTATAGCTCATTTCTCCAA+TGG - Chr8:54223805-54223824 MsG0880045101.01.T01:CDS 40.0%
CCTGCAAGTCTAACACATTA+AGG + Chr8:54225087-54225106 None:intergenic 40.0%
CCTTAATGTGTTAGACTTGC+AGG - Chr8:54225084-54225103 MsG0880045101.01.T01:intron 40.0%
CCTTGAACTAGACTTTACTG+CGG - Chr8:54224780-54224799 MsG0880045101.01.T01:intron 40.0%
CTAACATTAACACAGGTTGC+AGG - Chr8:54225738-54225757 MsG0880045101.01.T01:intron 40.0%
CTATTAATGCAGTGGATGAC+GGG - Chr8:54226628-54226647 MsG0880045101.01.T01:intron 40.0%
GATAGCATTATCTGCTGCAA+TGG + Chr8:54225811-54225830 None:intergenic 40.0%
GCAGCAGATAATGCTATCTT+TGG - Chr8:54225813-54225832 MsG0880045101.01.T01:intron 40.0%
GCTATTAATGCAGTGGATGA+CGG - Chr8:54226627-54226646 MsG0880045101.01.T01:intron 40.0%
GCTGTTGAAGCAGAGAAAAT+GGG - Chr8:54226168-54226187 MsG0880045101.01.T01:intron 40.0%
GGACCATAGCTATATCATCA+TGG - Chr8:54227251-54227270 MsG0880045101.01.T01:CDS 40.0%
GGATTTGAACTGCTTGAACT+TGG + Chr8:54224823-54224842 None:intergenic 40.0%
GGCAATTTAGTCCCTCAAAT+TGG + Chr8:54225453-54225472 None:intergenic 40.0%
GTAAATGGCAGTAGCAGAAA+AGG + Chr8:54224411-54224430 None:intergenic 40.0%
GTAACTTGAAGTGTGACACA+AGG + Chr8:54223933-54223952 None:intergenic 40.0%
GTATTAATAGGCCTGAGAGA+AGG - Chr8:54224284-54224303 MsG0880045101.01.T01:intron 40.0%
GTGAAATGTGGTTTCTCACA+AGG - Chr8:54226136-54226155 MsG0880045101.01.T01:intron 40.0%
TACAAAAGACGAAAAGGGGA+TGG + Chr8:54225933-54225952 None:intergenic 40.0%
TCAAGTTACCAACGTGTTCA+TGG - Chr8:54223944-54223963 MsG0880045101.01.T01:intron 40.0%
TGGAATGGAAAGAAGCTTAC+TGG + Chr8:54226213-54226232 None:intergenic 40.0%
TGGTGATATTGATGTTGGAG+AGG + Chr8:54223894-54223913 None:intergenic 40.0%
TGTCATCATTCTCACTGGAA+AGG - Chr8:54224381-54224400 MsG0880045101.01.T01:intron 40.0%
TTGATGTTGGAGAGGAAACA+AGG + Chr8:54223886-54223905 None:intergenic 40.0%
! AAGGAAATAAGTTGAGGTGG+TGG + Chr8:54223914-54223933 None:intergenic 40.0%
! AGGAGGGCATATATTGCATA+TGG - Chr8:54225773-54225792 MsG0880045101.01.T01:intron 40.0%
! AGTCTAGTTCAAGGTTCAAC+CGG + Chr8:54224774-54224793 None:intergenic 40.0%
! CACAAGGAAATAAGTTGAGG+TGG + Chr8:54223917-54223936 None:intergenic 40.0%
! TATGAGAAATCCGTTGGTGA+AGG - Chr8:54224046-54224065 MsG0880045101.01.T01:intron 40.0%
! TTTTCGACCTCACACGATTA+AGG - Chr8:54224312-54224331 MsG0880045101.01.T01:intron 40.0%
!! CATACATATGCTCTAAGGGA+AGG + Chr8:54226754-54226773 None:intergenic 40.0%
!! CCTTTGACTTGAGACTTGTT+GGG + Chr8:54225474-54225493 None:intergenic 40.0%
!! TCCTTTGACTTGAGACTTGT+TGG + Chr8:54225475-54225494 None:intergenic 40.0%
!!! CAATTACTGGTTTTGGAAGG+CGG + Chr8:54225644-54225663 None:intergenic 40.0%
AAATAGCCCAACCGCAATTC+GGG - Chr8:54226593-54226612 MsG0880045101.01.T01:intron 45.0%
AACCGGCCCTTACAATTTGA+CGG + Chr8:54225270-54225289 None:intergenic 45.0%
ACACCATGAAGGAAACCAAC+TGG - Chr8:54227344-54227363 MsG0880045101.01.T01:five_prime_UTR 45.0%
ACCAAACCATACGGTTCAAC+CGG - Chr8:54224752-54224771 MsG0880045101.01.T01:intron 45.0%
AGACATTCGAACGCGAGAAA+TGG + Chr8:54226305-54226324 None:intergenic 45.0%
ATCAGCTCCTTAATCGTGTG+AGG + Chr8:54224322-54224341 None:intergenic 45.0%
ATCATCATGGTATCAGAGCC+TGG - Chr8:54227264-54227283 MsG0880045101.01.T01:CDS 45.0%
ATCCAAGCACATGGTTAACC+AGG + Chr8:54227285-54227304 None:intergenic 45.0%
ATGTTGGAGAGGAAACAAGG+TGG + Chr8:54223883-54223902 None:intergenic 45.0%
ATTCGAACGCGAGAAATGGA+AGG + Chr8:54226301-54226320 None:intergenic 45.0%
ATTGAACTCTTTGGGCCAGT+TGG + Chr8:54227362-54227381 None:intergenic 45.0%
CAAGGCAGCTATTAATGCAG+TGG - Chr8:54226620-54226639 MsG0880045101.01.T01:intron 45.0%
CCCAACAAGTCTCAAGTCAA+AGG - Chr8:54225471-54225490 MsG0880045101.01.T01:CDS 45.0%
CTTGGCAATTCCTTCACCAA+CGG + Chr8:54224059-54224078 None:intergenic 45.0%
GAAATAGCCCAACCGCAATT+CGG - Chr8:54226592-54226611 MsG0880045101.01.T01:intron 45.0%
GAACATCACCATGAACACGT+TGG + Chr8:54223955-54223974 None:intergenic 45.0%
GAGAATGATGACACCAACAG+AGG + Chr8:54224374-54224393 None:intergenic 45.0%
GCTTGAACTTGGACGAAACT+GGG + Chr8:54224812-54224831 None:intergenic 45.0%
GGCTGTTGAAGCAGAGAAAA+TGG - Chr8:54226167-54226186 MsG0880045101.01.T01:intron 45.0%
GGTTAACCATGTGCTTGGAT+GGG - Chr8:54227285-54227304 MsG0880045101.01.T01:CDS 45.0%
TCAAGACCACTTGATGAAGC+AGG - Chr8:54227316-54227335 MsG0880045101.01.T01:exon 45.0%
TGCTTGAACTTGGACGAAAC+TGG + Chr8:54224813-54224832 None:intergenic 45.0%
TGGTTAACCATGTGCTTGGA+TGG - Chr8:54227284-54227303 MsG0880045101.01.T01:CDS 45.0%
TTGGTTTCCTTCATGGTGTC+AGG + Chr8:54227343-54227362 None:intergenic 45.0%
! ATAACCATCTGGAGTCCTCA+AGG + Chr8:54225041-54225060 None:intergenic 45.0%
! CCGCAGTAAAGTCTAGTTCA+AGG + Chr8:54224783-54224802 None:intergenic 45.0%
! CTATCATGTCACGTTTGGTG+AGG - Chr8:54226009-54226028 MsG0880045101.01.T01:intron 45.0%
! GGCACTGAAGAAGCAAATGA+AGG - Chr8:54226839-54226858 MsG0880045101.01.T01:CDS 45.0%
! GGTGGTGGTGATATTGATGT+TGG + Chr8:54223899-54223918 None:intergenic 45.0%
!! CGAAAAGCATTCCTTCTCTC+AGG + Chr8:54224298-54224317 None:intergenic 45.0%
!! GTTGGTGTCATCATTCTCAC+TGG - Chr8:54224376-54224395 MsG0880045101.01.T01:intron 45.0%
!!! TTTGTAAAATTTATTTTATA+GGG - Chr8:54224439-54224458 MsG0880045101.01.T01:intron 5.0%
!!! TTTTGTAAAATTTATTTTAT+AGG - Chr8:54224438-54224457 MsG0880045101.01.T01:intron 5.0%
AATCCGTTGACGTGACTCAG+AGG - Chr8:54224838-54224857 MsG0880045101.01.T01:intron 50.0%
ACAGATGCGTTCTGTAGTGG+TGG - Chr8:54225007-54225026 MsG0880045101.01.T01:CDS 50.0%
ACCGGTTGAACCGTATGGTT+TGG + Chr8:54224756-54224775 None:intergenic 50.0%
AGACCTCTGAGTCACGTCAA+CGG + Chr8:54224844-54224863 None:intergenic 50.0%
AGCCTGGTTAACCATGTGCT+TGG - Chr8:54227280-54227299 MsG0880045101.01.T01:CDS 50.0%
CTTTGGCCAAACTGGTCCTA+AGG - Chr8:54225830-54225849 MsG0880045101.01.T01:intron 50.0%
GAAAGGTGGAAGGACAACCT+TGG + Chr8:54224077-54224096 None:intergenic 50.0%
GCGTCTTCGCTCCATATATG+CGG + Chr8:54226870-54226889 None:intergenic 50.0%
GCTAGAGATGATCCCTCTGT+TGG - Chr8:54224358-54224377 MsG0880045101.01.T01:intron 50.0%
GGAACAGATGCGTTCTGTAG+TGG - Chr8:54225004-54225023 MsG0880045101.01.T01:CDS 50.0%
GGCGAATCTGCACCTGTAAT+AGG + Chr8:54225623-54225642 None:intergenic 50.0%
GGGCATGTTGAGGCAAGAAA+TGG - Chr8:54224459-54224478 MsG0880045101.01.T01:intron 50.0%
GTCCGTCAAATTGTAAGGGC+CGG - Chr8:54225265-54225284 MsG0880045101.01.T01:intron 50.0%
GTTCAACCGGTTGAACCGTA+TGG + Chr8:54224761-54224780 None:intergenic 50.0%
TCAACTCCCATCCAAGCACA+TGG + Chr8:54227294-54227313 None:intergenic 50.0%
TCAGGTCCTGCTTCATCAAG+TGG + Chr8:54227325-54227344 None:intergenic 50.0%
TGAGAACCCGAATTGCGGTT+GGG + Chr8:54226602-54226621 None:intergenic 50.0%
TGCCTTGAGAACCCGAATTG+CGG + Chr8:54226607-54226626 None:intergenic 50.0%
TGGAGAGGAAACAAGGTGGT+TGG + Chr8:54223879-54223898 None:intergenic 50.0%
TTGAGAACCCGAATTGCGGT+TGG + Chr8:54226603-54226622 None:intergenic 50.0%
! AACCGCAATTCGGGTTCTCA+AGG - Chr8:54226602-54226621 MsG0880045101.01.T01:intron 50.0%
! AAGGTTGGGAGCTTTGATGC+TGG - Chr8:54225975-54225994 MsG0880045101.01.T01:intron 50.0%
! CGTTGGTGAAGGAATTGCCA+AGG - Chr8:54224057-54224076 MsG0880045101.01.T01:intron 50.0%
! GAAGCACCTTAGGACCAGTT+TGG + Chr8:54225839-54225858 None:intergenic 50.0%
! GGGAGCTTTGATGCTGGTTA+TGG - Chr8:54225981-54226000 MsG0880045101.01.T01:intron 50.0%
AGCAGGACCTGACACCATGA+AGG - Chr8:54227333-54227352 MsG0880045101.01.T01:exon 55.0%
CAAGCCTTGAGGACTCCAGA+TGG - Chr8:54225034-54225053 MsG0880045101.01.T01:intron 55.0%
CAGGGTATGCTGTTGGAGGA+GGG - Chr8:54225757-54225776 MsG0880045101.01.T01:intron 55.0%
CAGGTTGCAGGGTATGCTGT+TGG - Chr8:54225750-54225769 MsG0880045101.01.T01:intron 55.0%
GTTGCAGGGTATGCTGTTGG+AGG - Chr8:54225753-54225772 MsG0880045101.01.T01:intron 55.0%
! CATCTGGAGTCCTCAAGGCT+TGG + Chr8:54225036-54225055 None:intergenic 55.0%
! GGGCCAGTTGGTTTCCTTCA+TGG + Chr8:54227350-54227369 None:intergenic 55.0%
GCAGGGTATGCTGTTGGAGG+AGG - Chr8:54225756-54225775 MsG0880045101.01.T01:intron 60.0%
! GTGGTGGTGACCAAGCCTTG+AGG - Chr8:54225023-54225042 MsG0880045101.01.T01:intron 60.0%
! TGACGGGCACGCTGGACTTC+AGG - Chr8:54226644-54226663 MsG0880045101.01.T01:intron 65.0%
!! GCAGTGGATGACGGGCACGC+TGG - Chr8:54226636-54226655 MsG0880045101.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 54223764 54227393 54223764 ID=MsG0880045101.01;Name=MsG0880045101.01
Chr8 mRNA 54223764 54227393 54223764 ID=MsG0880045101.01.T01;Parent=MsG0880045101.01;Name=MsG0880045101.01.T01;_AED=0.45;_eAED=0.45;_QI=60|0.71|0.62|0.87|1|1|8|0|365
Chr8 exon 54223764 54223877 54223764 ID=MsG0880045101.01.T01:exon:23383;Parent=MsG0880045101.01.T01
Chr8 exon 54224492 54224614 54224492 ID=MsG0880045101.01.T01:exon:23382;Parent=MsG0880045101.01.T01
Chr8 exon 54224945 54225040 54224945 ID=MsG0880045101.01.T01:exon:23381;Parent=MsG0880045101.01.T01
Chr8 exon 54225117 54225179 54225117 ID=MsG0880045101.01.T01:exon:23380;Parent=MsG0880045101.01.T01
Chr8 exon 54225306 54225527 54225306 ID=MsG0880045101.01.T01:exon:23379;Parent=MsG0880045101.01.T01
Chr8 exon 54226052 54226153 54226052 ID=MsG0880045101.01.T01:exon:23378;Parent=MsG0880045101.01.T01
Chr8 exon 54226755 54226877 54226755 ID=MsG0880045101.01.T01:exon:23377;Parent=MsG0880045101.01.T01
Chr8 exon 54227079 54227393 54227079 ID=MsG0880045101.01.T01:exon:23376;Parent=MsG0880045101.01.T01
Chr8 five_prime_UTR 54227334 54227393 54227334 ID=MsG0880045101.01.T01:five_prime_utr;Parent=MsG0880045101.01.T01
Chr8 CDS 54227079 54227333 54227079 ID=MsG0880045101.01.T01:cds;Parent=MsG0880045101.01.T01
Chr8 CDS 54226755 54226877 54226755 ID=MsG0880045101.01.T01:cds;Parent=MsG0880045101.01.T01
Chr8 CDS 54226052 54226153 54226052 ID=MsG0880045101.01.T01:cds;Parent=MsG0880045101.01.T01
Chr8 CDS 54225306 54225527 54225306 ID=MsG0880045101.01.T01:cds;Parent=MsG0880045101.01.T01
Chr8 CDS 54225117 54225179 54225117 ID=MsG0880045101.01.T01:cds;Parent=MsG0880045101.01.T01
Chr8 CDS 54224945 54225040 54224945 ID=MsG0880045101.01.T01:cds;Parent=MsG0880045101.01.T01
Chr8 CDS 54224492 54224614 54224492 ID=MsG0880045101.01.T01:cds;Parent=MsG0880045101.01.T01
Chr8 CDS 54223764 54223877 54223764 ID=MsG0880045101.01.T01:cds;Parent=MsG0880045101.01.T01
Gene Sequence

>MsG0880045101.01.T01

ATGGCAAACAACAAAGACATTGAAACAGTGATCAGAAGAGTCACTTCTGTAACCAACCACCTTGTTTCCTCTCCAACATCAATATCACCACCACCTCAACTTATTTCCTTGTGTCACACTTCAAGTTACCAACGTGTTCATGGTGATGTTCCTTCTCATGATGTTGTTTGGAAGGTTATTCCTTCAGATGATGATGAAGGAAAGGTTTTCACTGACATTGTCTATGAGAAATCCGTTGGTGAAGGAATTGCCAAGATTAGTATTAATAGGCCTGAGAGAAGGAATGCTTTTCGACCTCACACGATTAAGGAGCTGATTCGTGCTTTCAATGATGCTAGAGATGATCCCTCTGTTGGTGTCATCATTCTCACTGGAAAGGGAACAGATGCGTTCTGTAGTGGTGGTGACCAAGCCTTGAGGACTCCAGATGGTTATTCTGATCATGAAAATATCGGTCGCCTTAATGTGTTAGACTTGCAGGTGCAGATTCGCCGCCTTCCAAAACCAGTAATTGCAATGGTACTATCACTATTTACTCCAAATCTCACTTTTTTGTGCACAAAGCCTTCTGCAGCTGCAAATTATTTGCTAACATTAACACAGGTTGCAGGGTATGCTGTTGGAGGAGGGCATATATTGCATATGGTTTGTGATCTAACCATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCTAAGGTTGGGAGCTTTGATGCTGGTTATGGAAGTTCTATCATGTCACGTTTGGTGAGGATTAAAGTTGTAGGTCCTAAAAAAGCACGTGAAATGTGGTTTCTCACAAGGTTCTATACGGCTGTTGAAGCAGAGAAAATGGGCCTTATCAATACTGTTGTACCACTAGAGAATTTAGAAAAAGAAACAATCAAATGGTGTAGGGAGATACTGAGAAATAGCCCAACCGCAATTCGGGTTCTCAAGGCAGCTATTAATGCAGTGGATGACGGGCACGCTGGACTTCAGAGCCTGGTTAACCATGTGCTTGGATGGGAGTTGAACTCAAGACCACTTGATGAAGCAGGACCTGACACCATGAAGGAAACCAACTGGCCCAAAGAGTTCAATTTGTCAAATTAG

Protein sequence

>MsG0880045101.01.T01

MANNKDIETVIRRVTSVTNHLVSSPTSISPPPQLISLCHTSSYQRVHGDVPSHDVVWKVIPSDDDEGKVFTDIVYEKSVGEGIAKISINRPERRNAFRPHTIKELIRAFNDARDDPSVGVIILTGKGTDAFCSGGDQALRTPDGYSDHENIGRLNVLDLQVQIRRLPKPVIAMVLSLFTPNLTFLCTKPSAAANYLLTLTQVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVRIKVVGPKKAREMWFLTRFYTAVEAEKMGLINTVVPLENLEKETIKWCREILRNSPTAIRVLKAAINAVDDGHAGLQSLVNHVLGWELNSRPLDEAGPDTMKETNWPKEFNLSN*