Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025131.01.T01 | KAF7828984.1 | 71.841 | 277 | 42 | 1 | 2 | 242 | 3 | 279 | 6.27E-133 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025131.01.T01 | B6SJQ0 | 60.687 | 262 | 70 | 1 | 1 | 229 | 1 | 262 | 2.76E-107 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025131.01.T01 | G7JXK8 | 85.091 | 275 | 8 | 1 | 1 | 242 | 1 | 275 | 2.31e-163 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000038.01 | MsG0580025131.01 | 0.804641 | 1.959516e-49 | 1.015631e-46 |
| MsG0180000355.01 | MsG0580025131.01 | 0.808373 | 3.198143e-50 | 1.825548e-47 |
| MsG0180001828.01 | MsG0580025131.01 | 0.833582 | 4.910896e-56 | 5.679691e-53 |
| MsG0180003094.01 | MsG0580025131.01 | 0.831262 | 1.844636e-55 | 1.991135e-52 |
| MsG0180003353.01 | MsG0580025131.01 | 0.809099 | 2.236939e-50 | 1.301571e-47 |
| MsG0180003493.01 | MsG0580025131.01 | 0.815368 | 9.581456e-52 | 6.593385e-49 |
| MsG0180003885.01 | MsG0580025131.01 | 0.811261 | 7.650210e-51 | 4.713369e-48 |
| MsG0180003922.01 | MsG0580025131.01 | 0.817489 | 3.211110e-52 | 2.341846e-49 |
| MsG0180003932.01 | MsG0580025131.01 | 0.814310 | 1.644375e-51 | 1.099597e-48 |
| MsG0180004046.01 | MsG0580025131.01 | 0.810704 | 1.009976e-50 | 6.131383e-48 |
| MsG0180004062.01 | MsG0580025131.01 | 0.833714 | 4.551812e-56 | 5.285018e-53 |
| MsG0180004493.01 | MsG0580025131.01 | 0.830004 | 3.747451e-55 | 3.898991e-52 |
| MsG0180004605.01 | MsG0580025131.01 | -0.823839 | 1.115862e-53 | 9.717927e-51 |
| MsG0180006031.01 | MsG0580025131.01 | 0.800307 | 1.532467e-48 | 7.112301e-46 |
| MsG0280011027.01 | MsG0580025131.01 | 0.824117 | 9.602353e-54 | 8.427786e-51 |
| MsG0380014907.01 | MsG0580025131.01 | 0.825635 | 4.208996e-54 | 3.858080e-51 |
| MsG0480018584.01 | MsG0580025131.01 | 0.805268 | 1.448949e-49 | 7.632062e-47 |
| MsG0480021037.01 | MsG0580025131.01 | 0.838983 | 2.079065e-57 | 2.831336e-54 |
| MsG0480021195.01 | MsG0580025131.01 | 0.805567 | 1.254029e-49 | 6.656367e-47 |
| MsG0480022514.01 | MsG0580025131.01 | 0.818535 | 1.863807e-52 | 1.398881e-49 |
| MsG0480022586.01 | MsG0580025131.01 | 0.843391 | 1.442088e-58 | 2.253214e-55 |
| MsG0480023172.01 | MsG0580025131.01 | 0.832375 | 9.800283e-56 | 1.093316e-52 |
| MsG0480023384.01 | MsG0580025131.01 | 0.807846 | 4.141331e-50 | 2.331189e-47 |
| MsG0480023400.01 | MsG0580025131.01 | -0.805892 | 1.071790e-49 | 5.736918e-47 |
| MsG0480023639.01 | MsG0580025131.01 | 0.803269 | 3.778210e-49 | 1.890412e-46 |
| MsG0480023657.01 | MsG0580025131.01 | 0.801685 | 8.013330e-49 | 3.850689e-46 |
| MsG0580025131.01 | MsG0580025241.01 | 0.814680 | 1.361897e-51 | 9.198057e-49 |
| MsG0580025131.01 | MsG0580025814.01 | 0.821527 | 3.851224e-53 | 3.140827e-50 |
| MsG0580025131.01 | MsG0580027925.01 | 0.802826 | 4.665574e-49 | 2.308343e-46 |
| MsG0580025131.01 | MsG0580027928.01 | -0.834739 | 2.517534e-56 | 3.014337e-53 |
| MsG0580025131.01 | MsG0580028630.01 | 0.807687 | 4.475735e-50 | 2.509055e-47 |
| MsG0580025131.01 | MsG0580029127.01 | 0.800552 | 1.366037e-48 | 6.379053e-46 |
| MsG0580025131.01 | MsG0580029736.01 | 0.808372 | 3.198810e-50 | 1.825897e-47 |
| MsG0580025131.01 | MsG0580030010.01 | 0.808361 | 3.215995e-50 | 1.835245e-47 |
| MsG0580025131.01 | MsG0680030313.01 | 0.804032 | 2.624425e-49 | 1.339145e-46 |
| MsG0580025131.01 | MsG0680030784.01 | 0.805966 | 1.033986e-49 | 5.545223e-47 |
| MsG0580025131.01 | MsG0780036659.01 | 0.812460 | 4.192779e-51 | 2.667556e-48 |
| MsG0580025131.01 | MsG0780036757.01 | 0.826582 | 2.506231e-54 | 2.359895e-51 |
| MsG0580025131.01 | MsG0780037093.01 | 0.855962 | 4.436859e-62 | 1.042385e-58 |
| MsG0580025131.01 | MsG0780037157.01 | 0.823683 | 1.213918e-53 | 1.052621e-50 |
| MsG0580025131.01 | MsG0780038744.01 | 0.800549 | 1.368155e-48 | 6.388356e-46 |
| MsG0580025131.01 | MsG0780039155.01 | 0.809454 | 1.876804e-50 | 1.102395e-47 |
| MsG0580025131.01 | MsG0780041016.01 | 0.802933 | 4.434221e-49 | 2.199635e-46 |
| MsG0580025131.01 | MsG0780041391.01 | 0.803798 | 2.935726e-49 | 1.488975e-46 |
| MsG0580025131.01 | MsG0780041440.01 | 0.808599 | 2.861764e-50 | 1.643132e-47 |
| MsG0580025131.01 | MsG0780041634.01 | 0.818190 | 2.230598e-52 | 1.658292e-49 |
| MsG0580025131.01 | MsG0780041699.01 | 0.811479 | 6.859301e-51 | 4.250642e-48 |
| MsG0580025131.01 | MsG0880042544.01 | 0.810128 | 1.344312e-50 | 8.037709e-48 |
| MsG0580025131.01 | MsG0880044704.01 | 0.804807 | 1.808781e-49 | 9.416096e-47 |
| MsG0580025131.01 | MsG0880045294.01 | 0.803702 | 3.073146e-49 | 1.554793e-46 |
| MsG0380015870.01 | MsG0580025131.01 | 0.849495 | 3.117747e-60 | 5.921087e-57 |
| MsG0380016005.01 | MsG0580025131.01 | 0.802769 | 4.793936e-49 | 2.368282e-46 |
| MsG0380016063.01 | MsG0580025131.01 | 0.801142 | 1.035407e-48 | 4.908029e-46 |
| MsG0380016247.01 | MsG0580025131.01 | 0.823760 | 1.164437e-53 | 1.011906e-50 |
| MsG0380016505.01 | MsG0580025131.01 | 0.815337 | 9.736353e-52 | 6.694155e-49 |
| MsG0380017244.01 | MsG0580025131.01 | 0.806150 | 9.457929e-50 | 5.096052e-47 |
| MsG0380017433.01 | MsG0580025131.01 | 0.820153 | 7.972061e-53 | 6.258612e-50 |
| MsG0380018048.01 | MsG0580025131.01 | 0.808262 | 3.376958e-50 | 1.922059e-47 |
| MsG0480018278.01 | MsG0580025131.01 | 0.843597 | 1.270901e-58 | 1.998518e-55 |
| MsG0280007067.01 | MsG0580025131.01 | 0.801959 | 7.038651e-49 | 3.405968e-46 |
| MsG0280007432.01 | MsG0580025131.01 | 0.838524 | 2.732402e-57 | 3.669302e-54 |
| MsG0280007903.01 | MsG0580025131.01 | 0.820923 | 5.306344e-53 | 4.255769e-50 |
| MsG0280008738.01 | MsG0580025131.01 | 0.804929 | 1.706371e-49 | 8.910832e-47 |
| MsG0280010082.01 | MsG0580025131.01 | 0.801682 | 8.022871e-49 | 3.855018e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025131.01.T01 | MTR_5g022670 | 85.091 | 275 | 8 | 1 | 1 | 242 | 1 | 275 | 5.87e-167 | 467 |
| MsG0580025131.01.T01 | MTR_8g075150 | 67.500 | 280 | 52 | 2 | 2 | 242 | 3 | 282 | 2.66e-128 | 370 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025131.01.T01 | AT4G35920 | 58.608 | 273 | 79 | 2 | 3 | 242 | 4 | 275 | 2.15e-102 | 303 |
| MsG0580025131.01.T01 | AT4G35920 | 58.608 | 273 | 79 | 2 | 3 | 242 | 4 | 275 | 2.15e-102 | 303 |
| MsG0580025131.01.T01 | AT4G35920 | 58.608 | 273 | 79 | 2 | 3 | 242 | 4 | 275 | 2.15e-102 | 303 |
| MsG0580025131.01.T01 | AT4G35920 | 58.608 | 273 | 79 | 2 | 3 | 242 | 4 | 275 | 2.15e-102 | 303 |
| MsG0580025131.01.T01 | AT4G35920 | 58.608 | 273 | 79 | 2 | 3 | 242 | 4 | 275 | 2.15e-102 | 303 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 1.20e-89 | 267 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 1.09e-88 | 267 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 4.52e-88 | 266 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 4.52e-88 | 266 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 6.45e-88 | 266 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 6.54e-88 | 266 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 6.54e-88 | 266 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 6.54e-88 | 266 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 6.54e-88 | 266 |
| MsG0580025131.01.T01 | AT2G17780 | 56.471 | 255 | 73 | 3 | 3 | 222 | 4 | 255 | 6.54e-88 | 266 |
Find 56 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGGATAATGCTATTTC+TGG | 0.110996 | 5:+14198407 | MsG0580025131.01.T01:five_prime_UTR |
| ACAAAGGTCACAAGCAAATT+TGG | 0.213705 | 5:+14199915 | MsG0580025131.01.T01:CDS |
| TCCAGAGGTTCCCTAGTTTC+TGG | 0.254824 | 5:-14199039 | None:intergenic |
| GATGACAGACATTGCTTTGC+GGG | 0.316966 | 5:-14197975 | None:intergenic |
| GGAATATTGTTTATCAGTTC+AGG | 0.327510 | 5:+14199148 | MsG0580025131.01.T01:CDS |
| GATGGCATCGTGGGAACATA+TGG | 0.385164 | 5:+14198837 | MsG0580025131.01.T01:exon |
| TTGTGGACAATGCTCGAGTC+AGG | 0.387274 | 5:+14199223 | MsG0580025131.01.T01:CDS |
| AGTCATTCAACGTTTATTAG+AGG | 0.401692 | 5:+14199954 | MsG0580025131.01.T01:CDS |
| CAATGCATTTGAAGTTGATC+GGG | 0.408386 | 5:+14198974 | MsG0580025131.01.T01:CDS |
| AGTAGCAGAGTATTCTCTTC+CGG | 0.418308 | 5:+14199984 | MsG0580025131.01.T01:CDS |
| GAAGTTGATCGGGAACTTGT+TGG | 0.424270 | 5:+14198984 | MsG0580025131.01.T01:CDS |
| CTTGTGACCTTTGTAGCTCT+AGG | 0.425566 | 5:-14199906 | None:intergenic |
| TGAAAGACCATTGTCATCAT+TGG | 0.439272 | 5:-14200061 | None:intergenic |
| TCGGAGTTACCTGTATTTGT+TGG | 0.447850 | 5:+14199116 | MsG0580025131.01.T01:CDS |
| ATCCCATTGCCAACAAATAC+AGG | 0.448284 | 5:-14199125 | None:intergenic |
| TACAGTGTTCAAGATCTTGA+AGG | 0.452198 | 5:+14198391 | MsG0580025131.01.T01:intron |
| CGCTTCAGGGAAAGTACAGT+TGG | 0.453374 | 5:-14199857 | None:intergenic |
| TGTTCCTCTTATCACTCTTG+TGG | 0.458143 | 5:+14199206 | MsG0580025131.01.T01:CDS |
| AGGTTGATTCTCAGAGAAGA+TGG | 0.466392 | 5:+14198819 | MsG0580025131.01.T01:intron |
| TCCAGAAACTAGGGAACCTC+TGG | 0.467625 | 5:+14199038 | MsG0580025131.01.T01:CDS |
| TACCTGTATTTGTTGGCAAT+GGG | 0.468486 | 5:+14199123 | MsG0580025131.01.T01:CDS |
| GCAAATATAGCGCAATTGAC+TGG | 0.470701 | 5:+14198868 | MsG0580025131.01.T01:CDS |
| ATGGCATCGTGGGAACATAT+GGG | 0.476474 | 5:+14198838 | MsG0580025131.01.T01:CDS |
| TTACCTGTATTTGTTGGCAA+TGG | 0.484661 | 5:+14199122 | MsG0580025131.01.T01:CDS |
| GCAATGCATTTGAAGTTGAT+CGG | 0.487922 | 5:+14198973 | MsG0580025131.01.T01:CDS |
| TACTTGCAGGAAATTGAAGA+AGG | 0.492263 | 5:-14198025 | None:intergenic |
| AGTACAGTTGGGGTAAGAAC+AGG | 0.495891 | 5:-14199845 | None:intergenic |
| TGAAGAGGTATCCAGAAACT+AGG | 0.504087 | 5:+14199028 | MsG0580025131.01.T01:CDS |
| GCTTCAGGGAAAGTACAGTT+GGG | 0.506385 | 5:-14199856 | None:intergenic |
| ATTGTTATTTGCTTAATCAA+AGG | 0.510198 | 5:+14198495 | MsG0580025131.01.T01:five_prime_UTR |
| AAGAATGGAAGATTTGAAGC+TGG | 0.530843 | 5:-14198457 | None:intergenic |
| ACTCAGGAGGTCTTATATGT+TGG | 0.535088 | 5:+14199077 | MsG0580025131.01.T01:CDS |
| GTAGATGCTGTGAAGTTGAT+TGG | 0.535227 | 5:+14198892 | MsG0580025131.01.T01:CDS |
| TGATGACAGACATTGCTTTG+CGG | 0.537015 | 5:-14197976 | None:intergenic |
| CTCAGAGAAGATGGCATCGT+GGG | 0.550343 | 5:+14198828 | MsG0580025131.01.T01:exon |
| TGGATACTCTTTCGCAAGCA+AGG | 0.554273 | 5:+14200109 | MsG0580025131.01.T01:CDS |
| TTGTCCACAAGAGTGATAAG+AGG | 0.560131 | 5:-14199210 | None:intergenic |
| TGGCATCGTGGGAACATATG+GGG | 0.567292 | 5:+14198839 | MsG0580025131.01.T01:CDS |
| ACAGACATTGCTTTGCGGGA+AGG | 0.572093 | 5:-14197971 | None:intergenic |
| TGGTTCATAGTTGTCAAGAT+CGG | 0.572991 | 5:+14199097 | MsG0580025131.01.T01:CDS |
| GCATCTTCAAGCTGCTCCAG+AGG | 0.576787 | 5:-14199054 | None:intergenic |
| AGCAGCTTGAAGATGCACTC+AGG | 0.585540 | 5:+14199061 | MsG0580025131.01.T01:CDS |
| AGCTTAACCTAGAGCTACAA+AGG | 0.587180 | 5:+14199899 | MsG0580025131.01.T01:CDS |
| GAAGAGGTATCCAGAAACTA+GGG | 0.593786 | 5:+14199029 | MsG0580025131.01.T01:CDS |
| TCAAGATCTCTGAGCTGAAG+AGG | 0.593903 | 5:+14199013 | MsG0580025131.01.T01:CDS |
| ACTTGCAGGAAATTGAAGAA+GGG | 0.604207 | 5:-14198024 | None:intergenic |
| TGTATTTGTTGGCAATGGGA+TGG | 0.606590 | 5:+14199127 | MsG0580025131.01.T01:CDS |
| TGTGGACAATGCTCGAGTCA+GGG | 0.617555 | 5:+14199224 | MsG0580025131.01.T01:CDS |
| AGCTTGAAGATGCACTCAGG+AGG | 0.632593 | 5:+14199064 | MsG0580025131.01.T01:CDS |
| GGCATCGTGGGAACATATGG+GGG | 0.633731 | 5:+14198840 | MsG0580025131.01.T01:CDS |
| TATTGTTTATCAGTTCAGGA+AGG | 0.633802 | 5:+14199152 | MsG0580025131.01.T01:CDS |
| TCTGATGCCAATGATGACAA+TGG | 0.675518 | 5:+14200054 | MsG0580025131.01.T01:CDS |
| TGATAAGAGGAACAAGACGT+AGG | 0.682558 | 5:-14199197 | None:intergenic |
| CTTCAGGGAAAGTACAGTTG+GGG | 0.689261 | 5:-14199855 | None:intergenic |
| TCTCAGAGAAGATGGCATCG+TGG | 0.690772 | 5:+14198827 | MsG0580025131.01.T01:exon |
| TGAAAGCTGCAAGTACTGCA+AGG | 0.698868 | 5:+14198923 | MsG0580025131.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTATATTTTATT+TGG | + | Chr5:14198323-14198342 | MsG0580025131.01.T01:intron | 0.0% |
| !! | AAAGAAAATAATTAAAAAGA+AGG | - | Chr5:14198176-14198195 | None:intergenic | 10.0% |
| !! | TAAAAAATTAAACCTTAAAA+AGG | - | Chr5:14198314-14198333 | None:intergenic | 10.0% |
| !!! | TTATATTTTATTTGGTAATT+AGG | + | Chr5:14198331-14198350 | MsG0580025131.01.T01:intron | 10.0% |
| !!! | TTATTTTTGTTAATTGTTGA+TGG | + | Chr5:14198588-14198607 | MsG0580025131.01.T01:intron | 15.0% |
| !! | AAGCAAAAATATCTTAAGAA+TGG | - | Chr5:14198475-14198494 | None:intergenic | 20.0% |
| !! | TATAGTACTGCTTATTAAAA+GGG | - | Chr5:14199431-14199450 | None:intergenic | 20.0% |
| !!! | ACTTTGATGCATTTTTTTTT+TGG | + | Chr5:14198700-14198719 | MsG0580025131.01.T01:intron | 20.0% |
| !!! | ATTGTTATTTGCTTAATCAA+AGG | + | Chr5:14198495-14198514 | MsG0580025131.01.T01:five_prime_UTR | 20.0% |
| !!! | ATTTCATGCATGTTTTTTTT+AGG | + | Chr5:14198560-14198579 | MsG0580025131.01.T01:intron | 20.0% |
| !!! | CTTTGATGCATTTTTTTTTT+GGG | + | Chr5:14198701-14198720 | MsG0580025131.01.T01:intron | 20.0% |
| !!! | TTAATCTGCATTTTCTATAT+TGG | + | Chr5:14198079-14198098 | MsG0580025131.01.T01:intron | 20.0% |
| ! | AAAAAAAACAAAGAGTAGAG+TGG | + | Chr5:14197923-14197942 | MsG0580025131.01.T01:five_prime_UTR | 25.0% |
| ! | AAATGCAATTTGATGTTATG+AGG | + | Chr5:14198643-14198662 | MsG0580025131.01.T01:intron | 25.0% |
| ! | AATTTCAATCACATTGTTTC+TGG | + | Chr5:14199555-14199574 | MsG0580025131.01.T01:intron | 25.0% |
| ! | AGAAAATAGTTGTATCATTG+TGG | + | Chr5:14199296-14199315 | MsG0580025131.01.T01:intron | 25.0% |
| ! | GTATAGTACTGCTTATTAAA+AGG | - | Chr5:14199432-14199451 | None:intergenic | 25.0% |
| ! | TGAAGCGATTAAAAAAGAAA+AGG | + | Chr5:14199873-14199892 | MsG0580025131.01.T01:CDS | 25.0% |
| !! | GCTAAATTGTTCATTTCTTT+TGG | + | Chr5:14198104-14198123 | MsG0580025131.01.T01:intron | 25.0% |
| !! | TTCTTGTTCTTTCCTTTTTA+AGG | + | Chr5:14198299-14198318 | MsG0580025131.01.T01:intron | 25.0% |
| !!! | ATGTTTTAGCTGTATCATTT+TGG | + | Chr5:14199370-14199389 | MsG0580025131.01.T01:intron | 25.0% |
| !!! | TCTTTCTTATGACTTTTTTC+AGG | - | Chr5:14200021-14200040 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTAATCGCTTCA+GGG | - | Chr5:14199873-14199892 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTTTAATCGCTTC+AGG | - | Chr5:14199874-14199893 | None:intergenic | 25.0% |
| AAAACATGATGAAGAGAAAC+AGG | - | Chr5:14199502-14199521 | None:intergenic | 30.0% | |
| AATTGTACAATTCACATGTG+TGG | - | Chr5:14199539-14199558 | None:intergenic | 30.0% | |
| AGTCATTCAACGTTTATTAG+AGG | + | Chr5:14199954-14199973 | MsG0580025131.01.T01:CDS | 30.0% | |
| ATAAGCAGTACTATACAAAG+AGG | + | Chr5:14199436-14199455 | MsG0580025131.01.T01:intron | 30.0% | |
| CATATTTCCCTACATTTGTA+AGG | + | Chr5:14199584-14199603 | MsG0580025131.01.T01:intron | 30.0% | |
| GGAATATTGTTTATCAGTTC+AGG | + | Chr5:14199148-14199167 | MsG0580025131.01.T01:CDS | 30.0% | |
| TAGTGAAAGTTATTACTTGC+AGG | - | Chr5:14198041-14198060 | None:intergenic | 30.0% | |
| TATTGTTTATCAGTTCAGGA+AGG | + | Chr5:14199152-14199171 | MsG0580025131.01.T01:CDS | 30.0% | |
| TCTAAGTCCTTACAAATGTA+GGG | - | Chr5:14199594-14199613 | None:intergenic | 30.0% | |
| TGAAAAATACCATGCAAAAG+TGG | + | Chr5:14200089-14200108 | MsG0580025131.01.T01:CDS | 30.0% | |
| TTGCTCAATTGATTACAACT+TGG | - | Chr5:14199469-14199488 | None:intergenic | 30.0% | |
| ! | ATGGATTTCAATTTTCATGC+TGG | + | Chr5:14198231-14198250 | MsG0580025131.01.T01:intron | 30.0% |
| ! | CAATTTCTCTAGTTTAGCTA+TGG | + | Chr5:14198212-14198231 | MsG0580025131.01.T01:intron | 30.0% |
| ! | CATGAAAAAGCATAGAATTC+AGG | - | Chr5:14198002-14198021 | None:intergenic | 30.0% |
| !! | TTGAAGGATAATGCTATTTC+TGG | + | Chr5:14198407-14198426 | MsG0580025131.01.T01:five_prime_UTR | 30.0% |
| ACAAAGGTCACAAGCAAATT+TGG | + | Chr5:14199915-14199934 | MsG0580025131.01.T01:CDS | 35.0% | |
| ACCAACCAACTTTACACATT+TGG | - | Chr5:14199657-14199676 | None:intergenic | 35.0% | |
| ACTTGCAGGAAATTGAAGAA+GGG | - | Chr5:14198027-14198046 | None:intergenic | 35.0% | |
| AGCATCCAAATGTGTAAAGT+TGG | + | Chr5:14199649-14199668 | MsG0580025131.01.T01:intron | 35.0% | |
| AGGTTATTGAACATGATCAG+CGG | + | Chr5:14199727-14199746 | MsG0580025131.01.T01:intron | 35.0% | |
| AGTCAGTGACAATATAACAC+AGG | - | Chr5:14199617-14199636 | None:intergenic | 35.0% | |
| ATGATGAAGAGAAACAGGAT+TGG | - | Chr5:14199497-14199516 | None:intergenic | 35.0% | |
| GTCTAAGTCCTTACAAATGT+AGG | - | Chr5:14199595-14199614 | None:intergenic | 35.0% | |
| GTTAAACCAACTCTACCTAA+AGG | - | Chr5:14199323-14199342 | None:intergenic | 35.0% | |
| TACAGTGTTCAAGATCTTGA+AGG | + | Chr5:14198391-14198410 | MsG0580025131.01.T01:intron | 35.0% | |
| TACTTGCAGGAAATTGAAGA+AGG | - | Chr5:14198028-14198047 | None:intergenic | 35.0% | |
| TGAAAGACCATTGTCATCAT+TGG | - | Chr5:14200064-14200083 | None:intergenic | 35.0% | |
| TGGTTCATAGTTGTCAAGAT+CGG | + | Chr5:14199097-14199116 | MsG0580025131.01.T01:CDS | 35.0% | |
| TTGTATCATTGTGGTCCTTT+AGG | + | Chr5:14199305-14199324 | MsG0580025131.01.T01:intron | 35.0% | |
| ! | AAGAATGGAAGATTTGAAGC+TGG | - | Chr5:14198460-14198479 | None:intergenic | 35.0% |
| ! | AGCTGATGTAGCTTGATTTT+AGG | + | Chr5:14198799-14198818 | MsG0580025131.01.T01:intron | 35.0% |
| ! | CAATGCATTTGAAGTTGATC+GGG | + | Chr5:14198974-14198993 | MsG0580025131.01.T01:CDS | 35.0% |
| ! | GCAATGCATTTGAAGTTGAT+CGG | + | Chr5:14198973-14198992 | MsG0580025131.01.T01:CDS | 35.0% |
| ! | GTTGGTTTAACTCATTTGTC+AGG | + | Chr5:14199332-14199351 | MsG0580025131.01.T01:intron | 35.0% |
| ! | TACCTGTATTTGTTGGCAAT+GGG | + | Chr5:14199123-14199142 | MsG0580025131.01.T01:CDS | 35.0% |
| ! | TCCAAATGTGTAAAGTTGGT+TGG | + | Chr5:14199653-14199672 | MsG0580025131.01.T01:intron | 35.0% |
| ! | TTACCTGTATTTGTTGGCAA+TGG | + | Chr5:14199122-14199141 | MsG0580025131.01.T01:CDS | 35.0% |
| ! | TTTAAAACCTGATCCTGACA+AGG | + | Chr5:14199792-14199811 | MsG0580025131.01.T01:intron | 35.0% |
| !! | ATTTTGGTCCTTTAGGTAGA+GGG | + | Chr5:14199386-14199405 | MsG0580025131.01.T01:intron | 35.0% |
| !! | CTGTATCATTTTGGTCCTTT+AGG | + | Chr5:14199379-14199398 | MsG0580025131.01.T01:intron | 35.0% |
| !!! | AAAGAGTATCCACTTTTGCA+TGG | - | Chr5:14200101-14200120 | None:intergenic | 35.0% |
| !!! | CTTCATCATGTTTTGAGAGA+TGG | + | Chr5:14199508-14199527 | MsG0580025131.01.T01:intron | 35.0% |
| AAATCAAGCTACATCAGCTC+AGG | - | Chr5:14198798-14198817 | None:intergenic | 40.0% | |
| AGCAGTACTATACAAAGAGG+TGG | + | Chr5:14199439-14199458 | MsG0580025131.01.T01:intron | 40.0% | |
| AGCTTAACCTAGAGCTACAA+AGG | + | Chr5:14199899-14199918 | MsG0580025131.01.T01:CDS | 40.0% | |
| ATCCCATTGCCAACAAATAC+AGG | - | Chr5:14199128-14199147 | None:intergenic | 40.0% | |
| GCAAATATAGCGCAATTGAC+TGG | + | Chr5:14198868-14198887 | MsG0580025131.01.T01:CDS | 40.0% | |
| GGAATACACATTAGACGATG+AGG | + | Chr5:14199748-14199767 | MsG0580025131.01.T01:intron | 40.0% | |
| TCGGAGTTACCTGTATTTGT+TGG | + | Chr5:14199116-14199135 | MsG0580025131.01.T01:CDS | 40.0% | |
| TCTGATGCCAATGATGACAA+TGG | + | Chr5:14200054-14200073 | MsG0580025131.01.T01:CDS | 40.0% | |
| TCTGCTATCTCTTCTGTGAT+TGG | + | Chr5:14199258-14199277 | MsG0580025131.01.T01:intron | 40.0% | |
| TGATAAGAGGAACAAGACGT+AGG | - | Chr5:14199200-14199219 | None:intergenic | 40.0% | |
| TGATGACAGACATTGCTTTG+CGG | - | Chr5:14197979-14197998 | None:intergenic | 40.0% | |
| TGTTCCTCTTATCACTCTTG+TGG | + | Chr5:14199206-14199225 | MsG0580025131.01.T01:CDS | 40.0% | |
| TTGTCCACAAGAGTGATAAG+AGG | - | Chr5:14199213-14199232 | None:intergenic | 40.0% | |
| ! | ACTCAGGAGGTCTTATATGT+TGG | + | Chr5:14199077-14199096 | MsG0580025131.01.T01:CDS | 40.0% |
| ! | AGGTTGATTCTCAGAGAAGA+TGG | + | Chr5:14198819-14198838 | MsG0580025131.01.T01:intron | 40.0% |
| ! | AGTAGCAGAGTATTCTCTTC+CGG | + | Chr5:14199984-14200003 | MsG0580025131.01.T01:CDS | 40.0% |
| ! | CAATGCTTTTCTGCTCATTC+AGG | + | Chr5:14199695-14199714 | MsG0580025131.01.T01:intron | 40.0% |
| ! | GTAGATGCTGTGAAGTTGAT+TGG | + | Chr5:14198892-14198911 | MsG0580025131.01.T01:CDS | 40.0% |
| ! | TGTATTTGTTGGCAATGGGA+TGG | + | Chr5:14199127-14199146 | MsG0580025131.01.T01:CDS | 40.0% |
| ! | TTTTGGTCCTTTAGGTAGAG+GGG | + | Chr5:14199387-14199406 | MsG0580025131.01.T01:intron | 40.0% |
| !! | CATTTTGGTCCTTTAGGTAG+AGG | + | Chr5:14199385-14199404 | MsG0580025131.01.T01:intron | 40.0% |
| !! | GAAGAGGTATCCAGAAACTA+GGG | + | Chr5:14199029-14199048 | MsG0580025131.01.T01:CDS | 40.0% |
| !! | TGAAGAGGTATCCAGAAACT+AGG | + | Chr5:14199028-14199047 | MsG0580025131.01.T01:CDS | 40.0% |
| !!! | TTTTCAGGTGAACACTTGTC+CGG | - | Chr5:14200006-14200025 | None:intergenic | 40.0% |
| AAAACCTGATCCTGACAAGG+AGG | + | Chr5:14199795-14199814 | MsG0580025131.01.T01:intron | 45.0% | |
| AAATAACTGTGTGCGCCTGT+TGG | - | Chr5:14199775-14199794 | None:intergenic | 45.0% | |
| AGTACAGTTGGGGTAAGAAC+AGG | - | Chr5:14199848-14199867 | None:intergenic | 45.0% | |
| ATGGCATCGTGGGAACATAT+GGG | + | Chr5:14198838-14198857 | MsG0580025131.01.T01:CDS | 45.0% | |
| ATTAGACGATGAGGACCAAC+AGG | + | Chr5:14199757-14199776 | MsG0580025131.01.T01:intron | 45.0% | |
| CGAAAAACCCCTCTACCTAA+AGG | - | Chr5:14199397-14199416 | None:intergenic | 45.0% | |
| CTTGTGACCTTTGTAGCTCT+AGG | - | Chr5:14199909-14199928 | None:intergenic | 45.0% | |
| GATGACAGACATTGCTTTGC+GGG | - | Chr5:14197978-14197997 | None:intergenic | 45.0% | |
| TCAAGATCTCTGAGCTGAAG+AGG | + | Chr5:14199013-14199032 | MsG0580025131.01.T01:CDS | 45.0% | |
| TGGATACTCTTTCGCAAGCA+AGG | + | Chr5:14200109-14200128 | MsG0580025131.01.T01:CDS | 45.0% | |
| TGTGGTCCTTTAGGTAGAGT+TGG | + | Chr5:14199314-14199333 | MsG0580025131.01.T01:intron | 45.0% | |
| ! | CTTCAGGGAAAGTACAGTTG+GGG | - | Chr5:14199858-14199877 | None:intergenic | 45.0% |
| ! | GAAGTTGATCGGGAACTTGT+TGG | + | Chr5:14198984-14199003 | MsG0580025131.01.T01:CDS | 45.0% |
| ! | GCTTCAGGGAAAGTACAGTT+GGG | - | Chr5:14199859-14199878 | None:intergenic | 45.0% |
| ! | TGAAAGCTGCAAGTACTGCA+AGG | + | Chr5:14198923-14198942 | MsG0580025131.01.T01:CDS | 45.0% |
| !! | AAAAAATATAAATGTAATTA+TGG | + | Chr5:14198762-14198781 | MsG0580025131.01.T01:intron | 5.0% |
| ACAGACATTGCTTTGCGGGA+AGG | - | Chr5:14197974-14197993 | None:intergenic | 50.0% | |
| ACTGCAGTATCCTCCTTGTC+AGG | - | Chr5:14199808-14199827 | None:intergenic | 50.0% | |
| AGCAGCTTGAAGATGCACTC+AGG | + | Chr5:14199061-14199080 | MsG0580025131.01.T01:CDS | 50.0% | |
| AGCTTGAAGATGCACTCAGG+AGG | + | Chr5:14199064-14199083 | MsG0580025131.01.T01:CDS | 50.0% | |
| CTCAGAGAAGATGGCATCGT+GGG | + | Chr5:14198828-14198847 | MsG0580025131.01.T01:exon | 50.0% | |
| GATGGCATCGTGGGAACATA+TGG | + | Chr5:14198837-14198856 | MsG0580025131.01.T01:exon | 50.0% | |
| GCTCATTCAGGAGAGACTTG+AGG | + | Chr5:14199707-14199726 | MsG0580025131.01.T01:intron | 50.0% | |
| GTATCCTCCTTGTCAGGATC+AGG | - | Chr5:14199802-14199821 | None:intergenic | 50.0% | |
| TCCAGAAACTAGGGAACCTC+TGG | + | Chr5:14199038-14199057 | MsG0580025131.01.T01:CDS | 50.0% | |
| TCCAGAGGTTCCCTAGTTTC+TGG | - | Chr5:14199042-14199061 | None:intergenic | 50.0% | |
| TCTCAGAGAAGATGGCATCG+TGG | + | Chr5:14198827-14198846 | MsG0580025131.01.T01:exon | 50.0% | |
| TGGCATCGTGGGAACATATG+GGG | + | Chr5:14198839-14198858 | MsG0580025131.01.T01:CDS | 50.0% | |
| TGTGGACAATGCTCGAGTCA+GGG | + | Chr5:14199224-14199243 | MsG0580025131.01.T01:CDS | 50.0% | |
| TTGTGGACAATGCTCGAGTC+AGG | + | Chr5:14199223-14199242 | MsG0580025131.01.T01:CDS | 50.0% | |
| ! | CGCTTCAGGGAAAGTACAGT+TGG | - | Chr5:14199860-14199879 | None:intergenic | 50.0% |
| GCATCTTCAAGCTGCTCCAG+AGG | - | Chr5:14199057-14199076 | None:intergenic | 55.0% | |
| GGCATCGTGGGAACATATGG+GGG | + | Chr5:14198840-14198859 | MsG0580025131.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 14197870 | 14200134 | 14197870 | ID=MsG0580025131.01;Name=MsG0580025131.01 |
| Chr5 | mRNA | 14197870 | 14200134 | 14197870 | ID=MsG0580025131.01.T01;Parent=MsG0580025131.01;Name=MsG0580025131.01.T01;_AED=0.49;_eAED=0.49;_QI=313|0.66|0.75|1|0.33|0.25|4|0|242 |
| Chr5 | exon | 14197870 | 14198044 | 14197870 | ID=MsG0580025131.01.T01:exon:20557;Parent=MsG0580025131.01.T01 |
| Chr5 | exon | 14198396 | 14198516 | 14198396 | ID=MsG0580025131.01.T01:exon:20558;Parent=MsG0580025131.01.T01 |
| Chr5 | exon | 14198821 | 14199245 | 14198821 | ID=MsG0580025131.01.T01:exon:20559;Parent=MsG0580025131.01.T01 |
| Chr5 | exon | 14199814 | 14200134 | 14199814 | ID=MsG0580025131.01.T01:exon:20560;Parent=MsG0580025131.01.T01 |
| Chr5 | five_prime_UTR | 14197870 | 14198044 | 14197870 | ID=MsG0580025131.01.T01:five_prime_utr;Parent=MsG0580025131.01.T01 |
| Chr5 | five_prime_UTR | 14198396 | 14198516 | 14198396 | ID=MsG0580025131.01.T01:five_prime_utr;Parent=MsG0580025131.01.T01 |
| Chr5 | five_prime_UTR | 14198821 | 14198837 | 14198821 | ID=MsG0580025131.01.T01:five_prime_utr;Parent=MsG0580025131.01.T01 |
| Chr5 | CDS | 14198838 | 14199245 | 14198838 | ID=MsG0580025131.01.T01:cds;Parent=MsG0580025131.01.T01 |
| Chr5 | CDS | 14199814 | 14200134 | 14199814 | ID=MsG0580025131.01.T01:cds;Parent=MsG0580025131.01.T01 |
| Gene Sequence |
| Protein sequence |
