AlfalfaGEDB | MsG0480022587.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022587.01

KEGG: K17744
GO: -
PFAM: PF00248

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022587.01.T01	XP_003608332.1	75.455	110	5	1	7	116	229	316	1.35E-44	157

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022587.01.T01	O81884	50	110	33	1	7	116	232	319	5.29E-26	101

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022587.01.T01	G7JTZ5	75.455	110	5	1	7	116	229	316	6.46e-45	157

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047899.01	MsG0480022587.01	0.824753	6.805310e-54	6.083415e-51
MsG0180000355.01	MsG0480022587.01	0.823578	1.284652e-53	1.110513e-50
MsG0180000404.01	MsG0480022587.01	0.808411	3.138913e-50	1.793481e-47
MsG0180001610.01	MsG0480022587.01	0.800972	1.121554e-48	5.293738e-46
MsG0180003353.01	MsG0480022587.01	0.807309	5.383160e-50	2.988391e-47
MsG0180003741.01	MsG0480022587.01	0.800688	1.281506e-48	6.004922e-46
MsG0180004046.01	MsG0480022587.01	0.811325	7.409393e-51	4.572498e-48
MsG0180004192.01	MsG0480022587.01	0.804832	1.787336e-49	9.310355e-47
MsG0180004276.01	MsG0480022587.01	0.802072	6.671777e-49	3.237861e-46
MsG0180004466.01	MsG0480022587.01	0.821865	3.216792e-53	2.648869e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022587.01.T01	MTR_4g092750	75.455	110	5	1	7	116	229	316	1.64e-48	157
MsG0480022587.01.T01	MTR_4g092750	80.000	55	11	0	7	61	229	283	1.13e-24	95.1
MsG0480022587.01.T01	MTR_4g092750	93.333	45	3	0	7	51	229	273	3.18e-23	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022587.01.T01	AT4G33670	50.000	110	33	1	7	116	232	319	5.39e-27	101

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Find 32 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCATAGCAATGGGA+TGG	0.556593	4:-74405088	None:intergenic
AAACATCATAGCAATGGGAT+GGG	0.593757	4:-74405087	None:intergenic
AAATGTCAATCTCTTAACAA+AGG	0.640949	4:-74404374	None:intergenic
AACACCATGTGCAGGCAGCA+AGG	0.531462	4:-74405008	None:intergenic
ACACCATGTGCAGGCAGCAA+GGG	0.509430	4:-74405007	None:intergenic
AGAAGCTGCAAGTTCTCTTG+CGG	0.638741	4:-74404893	None:intergenic
AGATTGACATTTGCATGCAT+TGG	0.428000	4:+74404385	MsG0480022587.01.T01:CDS
AGCTTCTGGAATCGACGAAG+CGG	0.691488	4:+74404909	MsG0480022587.01.T01:CDS
ATATAAAAGAAATCTGAGGC+CGG	0.627728	4:-74405370	None:intergenic
ATTCAAAACATCATAGCAAT+GGG	0.435122	4:-74405092	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCCACAAATTATGTGAT+AGG	-	Chr4:74404284-74404303	None:intergenic	30.0%
AATAAAAAGTAGTCATGGGT+TGG	+	Chr4:74405112-74405131	MsG0480022587.01.T01:three_prime_UTR	30.0%
AATGAAAACAACAAAGAGAG+AGG	-	Chr4:74403924-74403943	None:intergenic	30.0%
AATTGAGAAAATATAGGTGG+AGG	+	Chr4:74404858-74404877	MsG0480022587.01.T01:intron	30.0%
AGAACCTATCACATAATTTG+TGG	+	Chr4:74404277-74404296	MsG0480022587.01.T01:intron	30.0%
AGAACTTCTTGCAAATCATT+TGG	-	Chr4:74404482-74404501	None:intergenic	30.0%
ATGTCAATATTGGAGTTCTT+GGG	+	Chr4:74404720-74404739	MsG0480022587.01.T01:intron	30.0%
CAATGCAATATTTAAGCAAG+TGG	+	Chr4:74404231-74404250	MsG0480022587.01.T01:intron	30.0%
CACTTGCTTAAATATTGCAT+TGG	-	Chr4:74404233-74404252	None:intergenic	30.0%
GAACTTCTTGCAAATCATTT+GGG	-	Chr4:74404481-74404500	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	74403627	74405386	74403627	ID=MsG0480022587.01;Name=MsG0480022587.01
Chr4	mRNA	74403627	74405386	74403627	ID=MsG0480022587.01.T01;Parent=MsG0480022587.01;Name=MsG0480022587.01.T01;_AED=0.45;_eAED=0.51;_QI=0\|0\|0.33\|1\|0\|0\|3\|381\|116
Chr4	exon	74403627	74403784	74403627	ID=MsG0480022587.01.T01:exon:3015;Parent=MsG0480022587.01.T01
Chr4	exon	74404372	74404432	74404372	ID=MsG0480022587.01.T01:exon:3016;Parent=MsG0480022587.01.T01
Chr4	exon	74404874	74405386	74404874	ID=MsG0480022587.01.T01:exon:3017;Parent=MsG0480022587.01.T01
Chr4	CDS	74403627	74403784	74403627	ID=MsG0480022587.01.T01:cds;Parent=MsG0480022587.01.T01
Chr4	CDS	74404372	74404432	74404372	ID=MsG0480022587.01.T01:cds;Parent=MsG0480022587.01.T01
Chr4	CDS	74404874	74405005	74404874	ID=MsG0480022587.01.T01:cds;Parent=MsG0480022587.01.T01
Chr4	three_prime_UTR	74405006	74405386	74405006	ID=MsG0480022587.01.T01:three_prime_utr;Parent=MsG0480022587.01.T01

Gene Sequence	>MsG0480022587.01.T01 ATGTATTTTGTTTGGAATATGCAGTCTGCTTGTAGAGCTGCTGCAACTTATTGCAAAGAAAATGGAAAAAACATTTCAAAGTTAGCAATGCAGTACAGCTTGTTAAATAAGGAAATCACATCGGTTCTTGTTGGCATGAGATCTGTCGAACAGGTTCTGTCCTTTGTTAAGAGATTGACATTTGCATGCATTGGCTTTAAAATTTTCTATAATTTAGCTGTGGAGGAAAATGTTACTGCCGCAAGAGAACTTGCAGCTTCTGGAATCGACGAAGCGGCTCTGTCAGAAGTCGGAACCATTCTAAAGCCTGTCAAAAATCAGTCATGGCCTAGCGGAATCCAGCAGAGTTGA
Protein sequence	>MsG0480022587.01.T01 MYFVWNMQSACRAAATYCKENGKNISKLAMQYSLLNKEITSVLVGMRSVEQVLSFVKRLTFACIGFKIFYNLAVEENVTAARELAASGIDEAALSEVGTILKPVKNQSWPSGIQQS*