Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024918.01.T01 | XP_039688731.1 | 64.402 | 368 | 102 | 5 | 1 | 360 | 1 | 347 | 1.30E-152 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024918.01.T01 | A0A1U8KII2 | 60.399 | 351 | 119 | 4 | 1 | 346 | 1 | 336 | 1.11e-137 | 404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380012021.01 | MsG0580024918.01 | 0.800577 | 1.350233e-48 | 6.309262e-46 |
| MsG0380014122.01 | MsG0580024918.01 | 0.940998 | 8.920058e-101 | 1.012709e-95 |
| MsG0480018593.01 | MsG0580024918.01 | 0.803665 | 3.128265e-49 | 1.581159e-46 |
| MsG0480020471.01 | MsG0580024918.01 | 0.803824 | 2.898361e-49 | 1.471040e-46 |
| MsG0480021688.01 | MsG0580024918.01 | 0.804277 | 2.334148e-49 | 1.198493e-46 |
| MsG0480021775.01 | MsG0580024918.01 | 0.900264 | 8.720491e-78 | 1.118909e-73 |
| MsG0480022862.01 | MsG0580024918.01 | 0.928215 | 3.954992e-92 | 2.058423e-87 |
| MsG0580024918.01 | MsG0580027617.01 | 0.933611 | 1.440097e-95 | 1.033155e-90 |
| MsG0580024918.01 | MsG0580029101.01 | 0.937278 | 4.494939e-98 | 4.032440e-93 |
| MsG0580024918.01 | MsG0580029278.01 | 0.802007 | 6.880892e-49 | 3.333768e-46 |
| MsG0580024918.01 | MsG0680035115.01 | 0.811775 | 5.914009e-51 | 3.693516e-48 |
| MsG0580024918.01 | MsG0780036201.01 | 0.823856 | 1.105391e-53 | 9.631651e-51 |
| MsG0580024918.01 | MsG0780038597.01 | 0.939992 | 4.987531e-100 | 5.306198e-95 |
| MsG0580024918.01 | MsG0780039252.01 | 0.813266 | 2.792494e-51 | 1.815025e-48 |
| MsG0580024918.01 | MsG0780039503.01 | 0.804687 | 1.917057e-49 | 9.948097e-47 |
| MsG0580024918.01 | MsG0780039544.01 | 0.818843 | 1.586671e-52 | 1.201084e-49 |
| MsG0580024918.01 | MsG0780039655.01 | 0.816458 | 5.472811e-52 | 3.879863e-49 |
| MsG0580024918.01 | MsG0780040186.01 | 0.854942 | 8.795805e-62 | 1.997358e-58 |
| MsG0580024918.01 | MsG0780041674.01 | 0.801009 | 1.101836e-48 | 5.205758e-46 |
| MsG0580024918.01 | MsG0880045895.01 | 0.800648 | 1.306038e-48 | 6.113796e-46 |
| MsG0380015877.01 | MsG0580024918.01 | 0.805517 | 1.284739e-49 | 6.810594e-47 |
| MsG0380016909.01 | MsG0580024918.01 | 0.807882 | 4.067395e-50 | 2.291735e-47 |
| MsG0280006510.01 | MsG0580024918.01 | 0.855868 | 4.725943e-62 | 1.106787e-58 |
| MsG0280010102.01 | MsG0580024918.01 | 0.815109 | 1.093848e-51 | 7.473573e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024918.01.T01 | MTR_7g062720 | 65.909 | 132 | 45 | 0 | 1 | 132 | 1 | 132 | 8.67e-60 | 190 |
| MsG0580024918.01.T01 | MTR_5g061150 | 62.992 | 127 | 47 | 0 | 20 | 146 | 10 | 136 | 2.58e-48 | 160 |
| MsG0580024918.01.T01 | MTR_4g037355 | 57.971 | 138 | 35 | 5 | 151 | 287 | 1 | 116 | 2.31e-41 | 142 |
| MsG0580024918.01.T01 | MTR_4g112730 | 71.831 | 71 | 18 | 1 | 138 | 208 | 1 | 69 | 1.12e-26 | 102 |
| MsG0580024918.01.T01 | MTR_1g036690 | 58.537 | 82 | 27 | 3 | 280 | 360 | 5 | 80 | 1.12e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAGGCTCTTAATATTTC+TGG | 0.080746 | 5:-11656204 | MsG0580024918.01.T01:CDS |
| TTCGGCATTTAAATGAATTT+TGG | 0.166319 | 5:+11656152 | None:intergenic |
| CACTTCAAAATAAGGATAAA+AGG | 0.234592 | 5:-11655309 | MsG0580024918.01.T01:CDS |
| CCAACAATCACTTCAAAATA+AGG | 0.244294 | 5:-11655317 | MsG0580024918.01.T01:CDS |
| ATGGTTATATTTGCGTTTAC+AGG | 0.259438 | 5:-11655929 | MsG0580024918.01.T01:CDS |
| AAATTGTCCCAAAGATCTTT+TGG | 0.267031 | 5:+11656006 | None:intergenic |
| TATAGGTGGGGTTCTATTCT+TGG | 0.275831 | 5:+11655155 | None:intergenic |
| TATTTCTGGAAATAATTATC+TGG | 0.282933 | 5:-11656190 | MsG0580024918.01.T01:CDS |
| TAGAAGATCCAAAAGATCTT+TGG | 0.283634 | 5:-11656014 | MsG0580024918.01.T01:CDS |
| TGTGTTGCTACATTCACTTC+TGG | 0.294995 | 5:+11655640 | None:intergenic |
| TAAAGATCAACAAGATGTTT+TGG | 0.333763 | 5:+11655340 | None:intergenic |
| TGAAGATGATTATGGTAATA+TGG | 0.338642 | 5:-11655257 | MsG0580024918.01.T01:CDS |
| CTGGAAATAATTATCTGGCT+TGG | 0.347827 | 5:-11656185 | MsG0580024918.01.T01:CDS |
| TATGGAAGGAGACGTGGTTT+TGG | 0.347848 | 5:-11655544 | MsG0580024918.01.T01:CDS |
| TGGAAATAATTATCTGGCTT+GGG | 0.353242 | 5:-11656184 | MsG0580024918.01.T01:CDS |
| CGTGGACGTGGTCATGGTTA+TGG | 0.384243 | 5:-11655562 | MsG0580024918.01.T01:CDS |
| AACCATTCATTACGAGCATT+AGG | 0.386252 | 5:+11655946 | None:intergenic |
| GAAAATGATGAAGATGATTA+TGG | 0.391347 | 5:-11655265 | MsG0580024918.01.T01:CDS |
| TTTGGGACAATTTAAAAGAA+AGG | 0.395342 | 5:-11655996 | MsG0580024918.01.T01:CDS |
| AGAAGATCCAAAAGATCTTT+GGG | 0.400056 | 5:-11656013 | MsG0580024918.01.T01:CDS |
| TGCTATCGTTGTGGAGGAAA+AGG | 0.414829 | 5:-11655388 | MsG0580024918.01.T01:CDS |
| GTGTTGCTACATTCACTTCT+GGG | 0.423307 | 5:+11655641 | None:intergenic |
| CCTTCGTCACCACCTTCATA+AGG | 0.433246 | 5:-11656061 | MsG0580024918.01.T01:CDS |
| ATTAACACTGTGTGGAGAAA+AGG | 0.440407 | 5:-11655854 | MsG0580024918.01.T01:CDS |
| CAAAATCGTGGTCGTGGCCG+TGG | 0.442209 | 5:-11655604 | MsG0580024918.01.T01:CDS |
| CGTGGTCGTGGCCGTGGTCA+TGG | 0.454221 | 5:-11655598 | MsG0580024918.01.T01:CDS |
| CAAAACAACTGAACAACAAA+AGG | 0.454927 | 5:-11656100 | MsG0580024918.01.T01:CDS |
| AATTGTATCTCCATGCCCTT+CGG | 0.460742 | 5:+11656134 | None:intergenic |
| AGAAATCAGCAGCATCTAAG+TGG | 0.464577 | 5:+11655227 | None:intergenic |
| TTTCACGGTATTGTTGCTGC+AGG | 0.465441 | 5:+11655773 | None:intergenic |
| AATGTTGTAAAGAATGATAT+TGG | 0.471241 | 5:-11655439 | MsG0580024918.01.T01:CDS |
| GCAGCAACAATACCGTGAAA+AGG | 0.474876 | 5:-11655770 | MsG0580024918.01.T01:CDS |
| AATCACTCGGCTCGTCCCAC+TGG | 0.475930 | 5:-11655676 | MsG0580024918.01.T01:CDS |
| GCTACATTCACTTCTGGGAA+TGG | 0.483138 | 5:+11655646 | None:intergenic |
| ACTTCAAAATAAGGATAAAA+GGG | 0.487291 | 5:-11655308 | MsG0580024918.01.T01:CDS |
| CATTTAAATGCCGAAGGGCA+TGG | 0.494088 | 5:-11656144 | MsG0580024918.01.T01:CDS |
| CAGCAACAATACCGTGAAAA+GGG | 0.498612 | 5:-11655769 | MsG0580024918.01.T01:CDS |
| GTAGCAACACATGATCACTA+TGG | 0.504040 | 5:-11655628 | MsG0580024918.01.T01:CDS |
| GTTGTGGAGGAAAAGGTCAT+TGG | 0.504176 | 5:-11655381 | MsG0580024918.01.T01:CDS |
| CGTGGCCGTGGTCATGGTCG+TGG | 0.506333 | 5:-11655592 | MsG0580024918.01.T01:CDS |
| TTCCTAATGCTCGTAATGAA+TGG | 0.506622 | 5:-11655948 | MsG0580024918.01.T01:CDS |
| TACATTAGATGCATGAAAAG+TGG | 0.516304 | 5:+11655798 | None:intergenic |
| CATGGTCGTGGACGTGGACG+TGG | 0.524744 | 5:-11655580 | MsG0580024918.01.T01:CDS |
| CATGGAGATACAATTAAAGA+AGG | 0.533844 | 5:-11656126 | MsG0580024918.01.T01:CDS |
| AAAATTCATTTAAATGCCGA+AGG | 0.537172 | 5:-11656150 | MsG0580024918.01.T01:CDS |
| CGTGGTCATGGTCGTGGACG+TGG | 0.540833 | 5:-11655586 | MsG0580024918.01.T01:CDS |
| CGTGGACGTGGACGTGGACG+TGG | 0.546682 | 5:-11655574 | MsG0580024918.01.T01:CDS |
| CGTGGACGTGGACGTGGTCA+TGG | 0.554275 | 5:-11655568 | MsG0580024918.01.T01:CDS |
| CTTAATATCATGCCTGCTTG+TGG | 0.567363 | 5:-11655728 | MsG0580024918.01.T01:CDS |
| TATGGACAAAATCGTGGTCG+TGG | 0.573891 | 5:-11655610 | MsG0580024918.01.T01:CDS |
| GTCTGTAATCGAATATAACT+CGG | 0.574961 | 5:-11655899 | MsG0580024918.01.T01:CDS |
| GAGAGTATTTGCTATCGTTG+TGG | 0.583351 | 5:-11655397 | MsG0580024918.01.T01:CDS |
| ATTCATTACGAGCATTAGGA+AGG | 0.589984 | 5:+11655950 | None:intergenic |
| CCTTATGAAGGTGGTGACGA+AGG | 0.598722 | 5:+11656061 | None:intergenic |
| AGTATTTGCTATCGTTGTGG+AGG | 0.599695 | 5:-11655394 | MsG0580024918.01.T01:CDS |
| CATGGTTATGGAAGGAGACG+TGG | 0.612985 | 5:-11655550 | MsG0580024918.01.T01:CDS |
| GACGTGGTCATGGTTATGGA+AGG | 0.616713 | 5:-11655558 | MsG0580024918.01.T01:CDS |
| GAAATCAGCAGCATCTAAGT+GGG | 0.621669 | 5:+11655228 | None:intergenic |
| AAATTCATTTAAATGCCGAA+GGG | 0.631745 | 5:-11656149 | MsG0580024918.01.T01:CDS |
| CACGTCCACGACCATGACCA+CGG | 0.661673 | 5:+11655587 | None:intergenic |
| GTGGTGACGAAGGAATATCA+TGG | 0.663314 | 5:+11656071 | None:intergenic |
| ACTTCTCTATTAACACTGTG+TGG | 0.668278 | 5:-11655862 | MsG0580024918.01.T01:CDS |
| TGGGAATGGAGCACTACCAG+TGG | 0.672955 | 5:+11655660 | None:intergenic |
| GGGAATGGAGCACTACCAGT+GGG | 0.676344 | 5:+11655661 | None:intergenic |
| GATCACTATGGACAAAATCG+TGG | 0.728183 | 5:-11655616 | MsG0580024918.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTGTAAAGAATGATAT+TGG | - | Chr5:11655957-11655976 | MsG0580024918.01.T01:CDS | 20.0% |
| !! | ACTTCAAAATAAGGATAAAA+GGG | - | Chr5:11656088-11656107 | MsG0580024918.01.T01:CDS | 20.0% |
| !!! | TATTTCTGGAAATAATTATC+TGG | - | Chr5:11655206-11655225 | MsG0580024918.01.T01:CDS | 20.0% |
| ! | AAAATTCATTTAAATGCCGA+AGG | - | Chr5:11655246-11655265 | MsG0580024918.01.T01:CDS | 25.0% |
| ! | AAATTCATTTAAATGCCGAA+GGG | - | Chr5:11655247-11655266 | MsG0580024918.01.T01:CDS | 25.0% |
| ! | CACTTCAAAATAAGGATAAA+AGG | - | Chr5:11656087-11656106 | MsG0580024918.01.T01:CDS | 25.0% |
| ! | GAAAATGATGAAGATGATTA+TGG | - | Chr5:11656131-11656150 | MsG0580024918.01.T01:CDS | 25.0% |
| ! | TGAAGATGATTATGGTAATA+TGG | - | Chr5:11656139-11656158 | MsG0580024918.01.T01:CDS | 25.0% |
| !! | TAAAGATCAACAAGATGTTT+TGG | + | Chr5:11656059-11656078 | None:intergenic | 25.0% |
| !! | TATTTTCATCTCTAATGAGA+TGG | + | Chr5:11656220-11656239 | None:intergenic | 25.0% |
| !! | TTACAACATTTTTCATCTTC+TGG | + | Chr5:11655947-11655966 | None:intergenic | 25.0% |
| !! | TTCGGCATTTAAATGAATTT+TGG | + | Chr5:11655247-11655266 | None:intergenic | 25.0% |
| !! | TTTGGGACAATTTAAAAGAA+AGG | - | Chr5:11655400-11655419 | MsG0580024918.01.T01:CDS | 25.0% |
| !!! | CATTTTTTAGATCCTTATGA+AGG | + | Chr5:11655350-11655369 | None:intergenic | 25.0% |
| !!! | GAGAAAATGTGTTTTTGTTT+TGG | + | Chr5:11655923-11655942 | None:intergenic | 25.0% |
| AGAAGATCCAAAAGATCTTT+GGG | - | Chr5:11655383-11655402 | MsG0580024918.01.T01:CDS | 30.0% | |
| ATGGTTATATTTGCGTTTAC+AGG | - | Chr5:11655467-11655486 | MsG0580024918.01.T01:CDS | 30.0% | |
| CAAAACAACTGAACAACAAA+AGG | - | Chr5:11655296-11655315 | MsG0580024918.01.T01:CDS | 30.0% | |
| CATGGAGATACAATTAAAGA+AGG | - | Chr5:11655270-11655289 | MsG0580024918.01.T01:CDS | 30.0% | |
| CCAACAATCACTTCAAAATA+AGG | - | Chr5:11656079-11656098 | MsG0580024918.01.T01:CDS | 30.0% | |
| GTCTGTAATCGAATATAACT+CGG | - | Chr5:11655497-11655516 | MsG0580024918.01.T01:CDS | 30.0% | |
| TACATTAGATGCATGAAAAG+TGG | + | Chr5:11655601-11655620 | None:intergenic | 30.0% | |
| TAGAAGATCCAAAAGATCTT+TGG | - | Chr5:11655382-11655401 | MsG0580024918.01.T01:CDS | 30.0% | |
| ! | AAATTGTCCCAAAGATCTTT+TGG | + | Chr5:11655393-11655412 | None:intergenic | 30.0% |
| ! | AAGATCTTTTGGATCTTCTA+TGG | + | Chr5:11655382-11655401 | None:intergenic | 30.0% |
| ! | GCTTTTGATGAAAAATCACT+CGG | - | Chr5:11655707-11655726 | MsG0580024918.01.T01:CDS | 30.0% |
| ! | TGGAAATAATTATCTGGCTT+GGG | - | Chr5:11655212-11655231 | MsG0580024918.01.T01:CDS | 30.0% |
| ! | TTTGAGGCTCTTAATATTTC+TGG | - | Chr5:11655192-11655211 | MsG0580024918.01.T01:CDS | 30.0% |
| ! | TTTTTAGATCCTTATGAAGG+TGG | + | Chr5:11655347-11655366 | None:intergenic | 30.0% |
| !!! | ACCTTTTAAAACCCTTTTCA+CGG | + | Chr5:11655641-11655660 | None:intergenic | 30.0% |
| !!! | CCTTATTTTGAAGTGATTGT+TGG | + | Chr5:11656082-11656101 | None:intergenic | 30.0% |
| AACCATTCATTACGAGCATT+AGG | + | Chr5:11655453-11655472 | None:intergenic | 35.0% | |
| ACTTCTCTATTAACACTGTG+TGG | - | Chr5:11655534-11655553 | MsG0580024918.01.T01:CDS | 35.0% | |
| ATTAACACTGTGTGGAGAAA+AGG | - | Chr5:11655542-11655561 | MsG0580024918.01.T01:CDS | 35.0% | |
| ATTCATTACGAGCATTAGGA+AGG | + | Chr5:11655449-11655468 | None:intergenic | 35.0% | |
| CTGGAAATAATTATCTGGCT+TGG | - | Chr5:11655211-11655230 | MsG0580024918.01.T01:CDS | 35.0% | |
| TTCCTAATGCTCGTAATGAA+TGG | - | Chr5:11655448-11655467 | MsG0580024918.01.T01:CDS | 35.0% | |
| ! | AGATGGTCAATCTTTTCATC+AGG | + | Chr5:11656203-11656222 | None:intergenic | 35.0% |
| ! | CCTCAAAATCAAGTTTTGCA+AGG | + | Chr5:11655179-11655198 | None:intergenic | 35.0% |
| ! | CCTTGCAAAACTTGATTTTG+AGG | - | Chr5:11655176-11655195 | MsG0580024918.01.T01:CDS | 35.0% |
| ! | CTTTTGGATCTTCTATGGTA+AGG | + | Chr5:11655377-11655396 | None:intergenic | 35.0% |
| !!! | ACCGTGAAAAGGGTTTTAAA+AGG | - | Chr5:11655637-11655656 | MsG0580024918.01.T01:CDS | 35.0% |
| AATTGTATCTCCATGCCCTT+CGG | + | Chr5:11655265-11655284 | None:intergenic | 40.0% | |
| AGAAATCAGCAGCATCTAAG+TGG | + | Chr5:11656172-11656191 | None:intergenic | 40.0% | |
| CAGCAACAATACCGTGAAAA+GGG | - | Chr5:11655627-11655646 | MsG0580024918.01.T01:CDS | 40.0% | |
| CTTAATATCATGCCTGCTTG+TGG | - | Chr5:11655668-11655687 | MsG0580024918.01.T01:CDS | 40.0% | |
| GAAATCAGCAGCATCTAAGT+GGG | + | Chr5:11656171-11656190 | None:intergenic | 40.0% | |
| GATCACTATGGACAAAATCG+TGG | - | Chr5:11655780-11655799 | MsG0580024918.01.T01:CDS | 40.0% | |
| GTAGCAACACATGATCACTA+TGG | - | Chr5:11655768-11655787 | MsG0580024918.01.T01:CDS | 40.0% | |
| ! | GAAGGATGACAGTTTTCTGA+TGG | + | Chr5:11655431-11655450 | None:intergenic | 40.0% |
| ! | GTGTTGCTACATTCACTTCT+GGG | + | Chr5:11655758-11655777 | None:intergenic | 40.0% |
| ! | TATTTTGTTCTGCCACAAGC+AGG | + | Chr5:11655683-11655702 | None:intergenic | 40.0% |
| ! | TGTGTTGCTACATTCACTTC+TGG | + | Chr5:11655759-11655778 | None:intergenic | 40.0% |
| !! | AGTATTTGCTATCGTTGTGG+AGG | - | Chr5:11656002-11656021 | MsG0580024918.01.T01:CDS | 40.0% |
| !! | GAGAGTATTTGCTATCGTTG+TGG | - | Chr5:11655999-11656018 | MsG0580024918.01.T01:CDS | 40.0% |
| CATTTAAATGCCGAAGGGCA+TGG | - | Chr5:11655252-11655271 | MsG0580024918.01.T01:CDS | 45.0% | |
| GCAGCAACAATACCGTGAAA+AGG | - | Chr5:11655626-11655645 | MsG0580024918.01.T01:CDS | 45.0% | |
| GTTGTGGAGGAAAAGGTCAT+TGG | - | Chr5:11656015-11656034 | MsG0580024918.01.T01:CDS | 45.0% | |
| TATGGACAAAATCGTGGTCG+TGG | - | Chr5:11655786-11655805 | MsG0580024918.01.T01:CDS | 45.0% | |
| TGCTATCGTTGTGGAGGAAA+AGG | - | Chr5:11656008-11656027 | MsG0580024918.01.T01:CDS | 45.0% | |
| TTTCACGGTATTGTTGCTGC+AGG | + | Chr5:11655626-11655645 | None:intergenic | 45.0% | |
| ! | GCTACATTCACTTCTGGGAA+TGG | + | Chr5:11655753-11655772 | None:intergenic | 45.0% |
| ! | GTGGTGACGAAGGAATATCA+TGG | + | Chr5:11655328-11655347 | None:intergenic | 45.0% |
| ! | TATGGAAGGAGACGTGGTTT+TGG | - | Chr5:11655852-11655871 | MsG0580024918.01.T01:CDS | 45.0% |
| !!! | AAGATGTTTTGGCGTACGAC+AGG | + | Chr5:11656048-11656067 | None:intergenic | 45.0% |
| CATGGTTATGGAAGGAGACG+TGG | - | Chr5:11655846-11655865 | MsG0580024918.01.T01:CDS | 50.0% | |
| CCTTCGTCACCACCTTCATA+AGG | - | Chr5:11655335-11655354 | MsG0580024918.01.T01:CDS | 50.0% | |
| GACGTGGTCATGGTTATGGA+AGG | - | Chr5:11655838-11655857 | MsG0580024918.01.T01:CDS | 50.0% | |
| ! | CCTTATGAAGGTGGTGACGA+AGG | + | Chr5:11655338-11655357 | None:intergenic | 50.0% |
| CGTGGACGTGGTCATGGTTA+TGG | - | Chr5:11655834-11655853 | MsG0580024918.01.T01:CDS | 55.0% | |
| ! | GGGAATGGAGCACTACCAGT+GGG | + | Chr5:11655738-11655757 | None:intergenic | 55.0% |
| ! | TGGGAATGGAGCACTACCAG+TGG | + | Chr5:11655739-11655758 | None:intergenic | 55.0% |
| CAAAATCGTGGTCGTGGCCG+TGG | - | Chr5:11655792-11655811 | MsG0580024918.01.T01:CDS | 60.0% | |
| CACGTCCACGACCATGACCA+CGG | + | Chr5:11655812-11655831 | None:intergenic | 60.0% | |
| ! | AATCACTCGGCTCGTCCCAC+TGG | - | Chr5:11655720-11655739 | MsG0580024918.01.T01:CDS | 60.0% |
| CATGGTCGTGGACGTGGACG+TGG | - | Chr5:11655816-11655835 | MsG0580024918.01.T01:CDS | 65.0% | |
| CGTGGACGTGGACGTGGTCA+TGG | - | Chr5:11655828-11655847 | MsG0580024918.01.T01:CDS | 65.0% | |
| CGTGGTCATGGTCGTGGACG+TGG | - | Chr5:11655810-11655829 | MsG0580024918.01.T01:CDS | 65.0% | |
| CGTGGACGTGGACGTGGACG+TGG | - | Chr5:11655822-11655841 | MsG0580024918.01.T01:CDS | 70.0% | |
| CGTGGCCGTGGTCATGGTCG+TGG | - | Chr5:11655804-11655823 | MsG0580024918.01.T01:CDS | 70.0% | |
| CGTGGTCGTGGCCGTGGTCA+TGG | - | Chr5:11655798-11655817 | MsG0580024918.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 11655168 | 11656250 | 11655168 | ID=MsG0580024918.01;Name=MsG0580024918.01 |
| Chr5 | mRNA | 11655168 | 11656250 | 11655168 | ID=MsG0580024918.01.T01;Parent=MsG0580024918.01;Name=MsG0580024918.01.T01;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|360 |
| Chr5 | exon | 11655168 | 11656250 | 11655168 | ID=MsG0580024918.01.T01:exon:19830;Parent=MsG0580024918.01.T01 |
| Chr5 | CDS | 11655168 | 11656250 | 11655168 | ID=MsG0580024918.01.T01:cds;Parent=MsG0580024918.01.T01 |
| Gene Sequence |
| Protein sequence |
