Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022866.01.T01 | XP_039684412.1 | 93.254 | 252 | 12 | 2 | 8 | 259 | 37 | 283 | 7.48E-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022866.01.T01 | Q6NLW5 | 40.566 | 106 | 53 | 3 | 158 | 259 | 201 | 300 | 3.06E-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022866.01.T01 | A0A396GQ56 | 93.145 | 248 | 12 | 2 | 12 | 259 | 36 | 278 | 7.88e-149 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048701.01 | MsG0480022866.01 | 0.809607 | 1.740456e-50 | 1.026551e-47 |
| MsG0080049140.01 | MsG0480022866.01 | 0.812323 | 4.491097e-51 | 2.846783e-48 |
| MsG0180006000.01 | MsG0480022866.01 | 0.808877 | 2.495930e-50 | 1.443558e-47 |
| MsG0280006311.01 | MsG0480022866.01 | 0.845892 | 3.058794e-59 | 5.173320e-56 |
| MsG0280010779.01 | MsG0480022866.01 | 0.831472 | 1.637764e-55 | 1.779115e-52 |
| MsG0280011282.01 | MsG0480022866.01 | 0.813077 | 3.072243e-51 | 1.986599e-48 |
| MsG0380012146.01 | MsG0480022866.01 | 0.800124 | 1.669424e-48 | 7.711680e-46 |
| MsG0480019635.01 | MsG0480022866.01 | 0.813517 | 2.459297e-51 | 1.609493e-48 |
| MsG0480019699.01 | MsG0480022866.01 | 0.820828 | 5.581345e-53 | 4.464353e-50 |
| MsG0480020965.01 | MsG0480022866.01 | 0.841976 | 3.426665e-58 | 5.120523e-55 |
| MsG0480021013.01 | MsG0480022866.01 | 0.817214 | 3.702843e-52 | 2.680131e-49 |
| MsG0480021203.01 | MsG0480022866.01 | 0.811921 | 5.497784e-51 | 3.446791e-48 |
| MsG0480022313.01 | MsG0480022866.01 | 0.823310 | 1.483506e-53 | 1.272708e-50 |
| MsG0480022331.01 | MsG0480022866.01 | 0.833540 | 5.029526e-56 | 5.810003e-53 |
| MsG0480022866.01 | MsG0480023832.01 | 0.826445 | 2.702804e-54 | 2.535271e-51 |
| MsG0480022866.01 | MsG0580024489.01 | 0.807373 | 5.217508e-50 | 2.901113e-47 |
| MsG0480022866.01 | MsG0580024758.01 | 0.830865 | 2.308720e-55 | 2.463201e-52 |
| MsG0480022866.01 | MsG0580025766.01 | 0.817301 | 3.540901e-52 | 2.568931e-49 |
| MsG0480022866.01 | MsG0580029298.01 | 0.800505 | 1.396346e-48 | 6.512735e-46 |
| MsG0480022866.01 | MsG0780036816.01 | 0.819215 | 1.305821e-52 | 9.986363e-50 |
| MsG0480022866.01 | MsG0780040896.01 | 0.818614 | 1.787931e-52 | 1.344773e-49 |
| MsG0480022866.01 | MsG0780041063.01 | 0.804427 | 2.171882e-49 | 1.119463e-46 |
| MsG0480022866.01 | MsG0880043614.01 | 0.803311 | 3.703037e-49 | 1.854742e-46 |
| MsG0380015548.01 | MsG0480022866.01 | 0.811068 | 8.421066e-51 | 5.162147e-48 |
| MsG0380016703.01 | MsG0480022866.01 | 0.845752 | 3.338411e-59 | 5.620701e-56 |
| MsG0380017239.01 | MsG0480022866.01 | 0.834838 | 2.377752e-56 | 2.855777e-53 |
| MsG0480018397.01 | MsG0480022866.01 | 0.841590 | 4.331889e-58 | 6.395712e-55 |
| MsG0280006540.01 | MsG0480022866.01 | 0.806823 | 6.822821e-50 | 3.739989e-47 |
| MsG0280008280.01 | MsG0480022866.01 | 0.814137 | 1.795362e-51 | 1.194914e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022866.01.T01 | MTR_3g064750 | 40.940 | 149 | 72 | 5 | 113 | 259 | 140 | 274 | 4.67e-28 | 108 |
| MsG0480022866.01.T01 | MTR_7g056400 | 40.367 | 109 | 54 | 2 | 154 | 259 | 206 | 306 | 4.38e-16 | 76.6 |
| MsG0480022866.01.T01 | MTR_8g013095 | 35.484 | 124 | 70 | 2 | 139 | 259 | 191 | 307 | 4.77e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022866.01.T01 | AT2G01990 | 48.511 | 235 | 82 | 9 | 26 | 259 | 17 | 213 | 1.04e-56 | 181 |
| MsG0480022866.01.T01 | AT2G01990 | 48.511 | 235 | 82 | 9 | 26 | 259 | 48 | 244 | 4.85e-56 | 180 |
| MsG0480022866.01.T01 | AT1G14630 | 46.352 | 233 | 70 | 5 | 27 | 259 | 49 | 226 | 1.76e-51 | 168 |
| MsG0480022866.01.T01 | AT5G48720 | 40.566 | 106 | 53 | 3 | 158 | 259 | 201 | 300 | 3.12e-15 | 74.3 |
| MsG0480022866.01.T01 | AT5G48720 | 40.566 | 106 | 53 | 3 | 158 | 259 | 201 | 300 | 3.12e-15 | 74.3 |
| MsG0480022866.01.T01 | AT5G48720 | 40.566 | 106 | 53 | 3 | 158 | 259 | 167 | 266 | 3.13e-15 | 73.9 |
| MsG0480022866.01.T01 | AT5G48720 | 40.566 | 106 | 53 | 3 | 158 | 259 | 167 | 266 | 3.13e-15 | 73.9 |
Find 66 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAAGATGAGGAGGAATT+TGG | 0.210157 | 4:-77709553 | None:intergenic |
| GCACAAGGTCCAGGCCTTTC+AGG | 0.243748 | 4:+77710072 | MsG0480022866.01.T01:CDS |
| AAACGTAGACGCTTGCTTAC+TGG | 0.250603 | 4:+77708817 | MsG0480022866.01.T01:CDS |
| TGGGGTGTCTCTGCTGGTTT+TGG | 0.261526 | 4:-77709602 | None:intergenic |
| TCACCAACTGGATGCCTTAC+TGG | 0.271694 | 4:-77710024 | None:intergenic |
| CCACTGGTTGGTGCCATATA+GGG | 0.272649 | 4:-77709000 | None:intergenic |
| ACATGGTGTATAATATATTA+TGG | 0.290465 | 4:-77710339 | None:intergenic |
| TCTGGAATTTCAACCCTATA+TGG | 0.295231 | 4:+77708987 | MsG0480022866.01.T01:CDS |
| TCCACTGGTTGGTGCCATAT+AGG | 0.356387 | 4:-77709001 | None:intergenic |
| CTTGAGTGTGGATTCTAGTA+AGG | 0.359570 | 4:-77710110 | None:intergenic |
| GGATGCCTTACTGGCCTTGT+TGG | 0.361970 | 4:-77710015 | None:intergenic |
| AGATGAAAACAAAGCAAATC+AGG | 0.369108 | 4:-77710263 | None:intergenic |
| CAAGAGTCTGATTTCTCAAC+TGG | 0.388114 | 4:+77708754 | MsG0480022866.01.T01:CDS |
| AGTAAGCAAGCGTCTACGTT+TGG | 0.390270 | 4:-77708815 | None:intergenic |
| TGATATTGAATTATATGATA+TGG | 0.395909 | 4:+77708696 | MsG0480022866.01.T01:CDS |
| GAAGATGCTTTGGTTGAGTT+TGG | 0.397664 | 4:+77708784 | MsG0480022866.01.T01:CDS |
| ACCAAGTGGGGTGTCTCTGC+TGG | 0.412693 | 4:-77709608 | None:intergenic |
| TGGTTATCTAGAAGATGCTT+TGG | 0.413523 | 4:+77708774 | MsG0480022866.01.T01:CDS |
| ATTATATGATATGGTAGTTA+TGG | 0.420825 | 4:+77708705 | MsG0480022866.01.T01:CDS |
| CCACCACTGCTTTGCCTGAA+AGG | 0.422228 | 4:-77710086 | None:intergenic |
| TTCGATCTTTACAATTTAGC+AGG | 0.426146 | 4:-77710286 | None:intergenic |
| ACATCACCTTCTTCTCCTCC+TGG | 0.426500 | 4:-77709955 | None:intergenic |
| GTACTGTGAATGTTAGCCTT+TGG | 0.428209 | 4:-77710163 | None:intergenic |
| GTGTCTTCTAGAAGAATGTT+TGG | 0.443352 | 4:-77709493 | None:intergenic |
| TGCCTTACTGGCCTTGTTGG+AGG | 0.444848 | 4:-77710012 | None:intergenic |
| CCTGGCTTCACTAATGCAAA+TGG | 0.448137 | 4:-77709937 | None:intergenic |
| GAAAGAAGAAGAAGGTGGTA+AGG | 0.450731 | 4:+77709890 | MsG0480022866.01.T01:CDS |
| TACCTTATCAAAATCATCAA+TGG | 0.460583 | 4:-77708866 | None:intergenic |
| TGCCTCCAACAAGGCCAGTA+AGG | 0.471163 | 4:+77710010 | MsG0480022866.01.T01:CDS |
| ACTGCTTTGCCTGAAAGGCC+TGG | 0.473365 | 4:-77710081 | None:intergenic |
| TGCGTATCTGCACAAGGTCC+AGG | 0.484327 | 4:+77710063 | MsG0480022866.01.T01:CDS |
| GATCAGATAGAAAGGATTTG+TGG | 0.485973 | 4:+77709040 | MsG0480022866.01.T01:CDS |
| GTGAAGCCAGGAGGAGAAGA+AGG | 0.488620 | 4:+77709949 | MsG0480022866.01.T01:CDS |
| CGACATGCAAAGTCACCAAC+TGG | 0.501594 | 4:-77710036 | None:intergenic |
| TGCCTCTTCTTCCTTGAGTG+TGG | 0.502866 | 4:-77710122 | None:intergenic |
| CCATTTGCATTAGTGAAGCC+AGG | 0.517544 | 4:+77709937 | MsG0480022866.01.T01:CDS |
| ACTGCATGGATCAGATAGAA+AGG | 0.538926 | 4:+77709032 | MsG0480022866.01.T01:CDS |
| TATATAAAAGTATACCAAGT+GGG | 0.540976 | 4:-77709621 | None:intergenic |
| TAATTCTTTGTATGAAGATG+AGG | 0.552442 | 4:-77709563 | None:intergenic |
| CCTTTCAGGCAAAGCAGTGG+TGG | 0.557492 | 4:+77710086 | MsG0480022866.01.T01:CDS |
| TTGAGTGTGGATTCTAGTAA+GGG | 0.559111 | 4:-77710109 | None:intergenic |
| GGTGATGAGAAAGAAGAAGA+AGG | 0.559761 | 4:+77709882 | MsG0480022866.01.T01:CDS |
| AGTGGAGAATTTCTACTGCA+TGG | 0.572678 | 4:+77709018 | MsG0480022866.01.T01:CDS |
| TTCTTTGTATGAAGATGAGG+AGG | 0.574245 | 4:-77709560 | None:intergenic |
| CCCTATATGGCACCAACCAG+TGG | 0.576336 | 4:+77709000 | MsG0480022866.01.T01:CDS |
| ATCACTATTATCAGAACCAA+AGG | 0.578340 | 4:+77710147 | MsG0480022866.01.T01:CDS |
| ACCAGCAGAGACACCCCACT+TGG | 0.586964 | 4:+77709607 | MsG0480022866.01.T01:CDS |
| ATCCACACTCAAGGAAGAAG+AGG | 0.597837 | 4:+77710120 | MsG0480022866.01.T01:CDS |
| CATTGAATGACATAAATGAA+AGG | 0.598530 | 4:+77709980 | MsG0480022866.01.T01:CDS |
| ATGCAGTAGAAATTCTCCAC+TGG | 0.600169 | 4:-77709016 | None:intergenic |
| GATGAGAAAGAAGAAGAAGG+TGG | 0.601854 | 4:+77709885 | MsG0480022866.01.T01:CDS |
| GGACCTTGTGCAGATACGCA+TGG | 0.608397 | 4:-77710060 | None:intergenic |
| CAGTTGGTGACTTTGCATGT+CGG | 0.613753 | 4:+77710037 | MsG0480022866.01.T01:CDS |
| TTTGGTTCTGATAATAGTGA+TGG | 0.613771 | 4:-77710145 | None:intergenic |
| CGGCCATGCGTATCTGCACA+AGG | 0.617785 | 4:+77710057 | MsG0480022866.01.T01:CDS |
| AGTAGAAATTCTCCACTGGT+TGG | 0.629919 | 4:-77709012 | None:intergenic |
| GGATCTTAATGCCTCCAACA+AGG | 0.630736 | 4:+77710001 | MsG0480022866.01.T01:CDS |
| TAGTACTACTACTAGTGATG+AGG | 0.645618 | 4:+77709861 | MsG0480022866.01.T01:CDS |
| CTTACTAGAATCCACACTCA+AGG | 0.649499 | 4:+77710111 | MsG0480022866.01.T01:CDS |
| ATATAAAAGTATACCAAGTG+GGG | 0.654319 | 4:-77709620 | None:intergenic |
| AAGGACAACAACAACAAGAG+TGG | 0.654506 | 4:+77709909 | MsG0480022866.01.T01:CDS |
| AGGCCTTTCAGGCAAAGCAG+TGG | 0.658996 | 4:+77710083 | MsG0480022866.01.T01:CDS |
| AGGCCAGTAAGGCATCCAGT+TGG | 0.681142 | 4:+77710021 | MsG0480022866.01.T01:CDS |
| AATACTATATTGTATACACA+TGG | 0.691227 | 4:-77710356 | None:intergenic |
| ATGAACATATAAGCACGTTG+AGG | 0.691682 | 4:+77709452 | MsG0480022866.01.T01:CDS |
| TTTGCATTAGTGAAGCCAGG+AGG | 0.731178 | 4:+77709940 | MsG0480022866.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTATAAATATATCATA+TGG | + | Chr4:77709808-77709827 | MsG0480022866.01.T01:intron | 10.0% |
| !! | TTATTTAAATTATTGAAAAC+AGG | + | Chr4:77709835-77709854 | MsG0480022866.01.T01:intron | 10.0% |
| !! | AAATCAAAAGAAAAGAATAA+AGG | + | Chr4:77709224-77709243 | MsG0480022866.01.T01:intron | 15.0% |
| !! | AATTTCAAACTTAAAATGAA+AGG | - | Chr4:77708917-77708936 | None:intergenic | 15.0% |
| !! | TATATTAATGTAGCAAAATA+CGG | + | Chr4:77709700-77709719 | MsG0480022866.01.T01:intron | 15.0% |
| !! | TGATATTGAATTATATGATA+TGG | + | Chr4:77708696-77708715 | MsG0480022866.01.T01:CDS | 15.0% |
| !! | TTTATATACTCTATTACATA+TGG | + | Chr4:77709636-77709655 | MsG0480022866.01.T01:intron | 15.0% |
| !! | AATACTATATTGTATACACA+TGG | - | Chr4:77710359-77710378 | None:intergenic | 20.0% |
| !! | AATTGATTGAGAATTGAAAA+AGG | + | Chr4:77709192-77709211 | MsG0480022866.01.T01:intron | 20.0% |
| !! | ACATGGTGTATAATATATTA+TGG | - | Chr4:77710342-77710361 | None:intergenic | 20.0% |
| !! | ATTATATGATATGGTAGTTA+TGG | + | Chr4:77708705-77708724 | MsG0480022866.01.T01:CDS | 20.0% |
| !! | TATGTAACTATATATAGTTC+TGG | + | Chr4:77708969-77708988 | MsG0480022866.01.T01:intron | 20.0% |
| !!! | TATATAAAAGTATACCAAGT+GGG | - | Chr4:77709624-77709643 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTTTGATTTCTTT+GGG | - | Chr4:77709220-77709239 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTTTTGATTTCTT+TGG | - | Chr4:77709221-77709240 | None:intergenic | 20.0% |
| ! | CATTGAATGACATAAATGAA+AGG | + | Chr4:77709980-77709999 | MsG0480022866.01.T01:CDS | 25.0% |
| ! | TAATTCTTTGTATGAAGATG+AGG | - | Chr4:77709566-77709585 | None:intergenic | 25.0% |
| ! | TACCTTATCAAAATCATCAA+TGG | - | Chr4:77708869-77708888 | None:intergenic | 25.0% |
| !! | ATATAAAAGTATACCAAGTG+GGG | - | Chr4:77709623-77709642 | None:intergenic | 25.0% |
| !! | GTATATAAAAGTATACCAAG+TGG | - | Chr4:77709625-77709644 | None:intergenic | 25.0% |
| !!! | TTCCATTGATGATTTTGATA+AGG | + | Chr4:77708864-77708883 | MsG0480022866.01.T01:CDS | 25.0% |
| !!! | TTTGAAATTCTTGTTGTTCT+TGG | + | Chr4:77708928-77708947 | MsG0480022866.01.T01:intron | 25.0% |
| !!! | TTTTGTTATCATGCATGTTA+TGG | + | Chr4:77710198-77710217 | MsG0480022866.01.T01:three_prime_UTR | 25.0% |
| AGATGAAAACAAAGCAAATC+AGG | - | Chr4:77710266-77710285 | None:intergenic | 30.0% | |
| ATCACTATTATCAGAACCAA+AGG | + | Chr4:77710147-77710166 | MsG0480022866.01.T01:CDS | 30.0% | |
| TTCGATCTTTACAATTTAGC+AGG | - | Chr4:77710289-77710308 | None:intergenic | 30.0% | |
| ! | ATATGACGTGATGATCATTT+TGG | + | Chr4:77709113-77709132 | MsG0480022866.01.T01:intron | 30.0% |
| !! | TTTGGTTCTGATAATAGTGA+TGG | - | Chr4:77710148-77710167 | None:intergenic | 30.0% |
| !!! | CTGGTTTTGGATATTGTTAA+TGG | - | Chr4:77709592-77709611 | None:intergenic | 30.0% |
| !!! | GATGATCATTTTGGTTCAAA+AGG | + | Chr4:77709122-77709141 | MsG0480022866.01.T01:intron | 30.0% |
| ATGAACATATAAGCACGTTG+AGG | + | Chr4:77709452-77709471 | MsG0480022866.01.T01:CDS | 35.0% | |
| GATCAGATAGAAAGGATTTG+TGG | + | Chr4:77709040-77709059 | MsG0480022866.01.T01:CDS | 35.0% | |
| TAGTACTACTACTAGTGATG+AGG | + | Chr4:77709861-77709880 | MsG0480022866.01.T01:CDS | 35.0% | |
| TATGAAGATGAGGAGGAATT+TGG | - | Chr4:77709556-77709575 | None:intergenic | 35.0% | |
| TGGTTATCTAGAAGATGCTT+TGG | + | Chr4:77708774-77708793 | MsG0480022866.01.T01:CDS | 35.0% | |
| TTCTTTGTATGAAGATGAGG+AGG | - | Chr4:77709563-77709582 | None:intergenic | 35.0% | |
| TTGAGTGTGGATTCTAGTAA+GGG | - | Chr4:77710112-77710131 | None:intergenic | 35.0% | |
| ! | GAAAGGATTTGTGGATTTTC+AGG | + | Chr4:77709049-77709068 | MsG0480022866.01.T01:CDS | 35.0% |
| ! | GTGTCTTCTAGAAGAATGTT+TGG | - | Chr4:77709496-77709515 | None:intergenic | 35.0% |
| ! | TCTGGAATTTCAACCCTATA+TGG | + | Chr4:77708987-77709006 | MsG0480022866.01.T01:CDS | 35.0% |
| AAGGACAACAACAACAAGAG+TGG | + | Chr4:77709909-77709928 | MsG0480022866.01.T01:CDS | 40.0% | |
| ACTGCATGGATCAGATAGAA+AGG | + | Chr4:77709032-77709051 | MsG0480022866.01.T01:CDS | 40.0% | |
| AGTAGAAATTCTCCACTGGT+TGG | - | Chr4:77709015-77709034 | None:intergenic | 40.0% | |
| AGTGGAGAATTTCTACTGCA+TGG | + | Chr4:77709018-77709037 | MsG0480022866.01.T01:CDS | 40.0% | |
| ATGCAGTAGAAATTCTCCAC+TGG | - | Chr4:77709019-77709038 | None:intergenic | 40.0% | |
| ATGGTCTGTAACTGCAATTG+CGG | - | Chr4:77709783-77709802 | None:intergenic | 40.0% | |
| CAAAATACGGACCACAATTG+CGG | + | Chr4:77709713-77709732 | MsG0480022866.01.T01:intron | 40.0% | |
| CAAGAGTCTGATTTCTCAAC+TGG | + | Chr4:77708754-77708773 | MsG0480022866.01.T01:CDS | 40.0% | |
| CTTACTAGAATCCACACTCA+AGG | + | Chr4:77710111-77710130 | MsG0480022866.01.T01:CDS | 40.0% | |
| CTTGAGTGTGGATTCTAGTA+AGG | - | Chr4:77710113-77710132 | None:intergenic | 40.0% | |
| GAAAGAAGAAGAAGGTGGTA+AGG | + | Chr4:77709890-77709909 | MsG0480022866.01.T01:CDS | 40.0% | |
| GAAGATGCTTTGGTTGAGTT+TGG | + | Chr4:77708784-77708803 | MsG0480022866.01.T01:CDS | 40.0% | |
| GATGAGAAAGAAGAAGAAGG+TGG | + | Chr4:77709885-77709904 | MsG0480022866.01.T01:CDS | 40.0% | |
| GCAAATCAGGCTAAAAAAGC+TGG | - | Chr4:77710253-77710272 | None:intergenic | 40.0% | |
| GGTGATGAGAAAGAAGAAGA+AGG | + | Chr4:77709882-77709901 | MsG0480022866.01.T01:CDS | 40.0% | |
| !! | GTACTGTGAATGTTAGCCTT+TGG | - | Chr4:77710166-77710185 | None:intergenic | 40.0% |
| AAACGTAGACGCTTGCTTAC+TGG | + | Chr4:77708817-77708836 | MsG0480022866.01.T01:CDS | 45.0% | |
| AGTAAGCAAGCGTCTACGTT+TGG | - | Chr4:77708818-77708837 | None:intergenic | 45.0% | |
| ATCCACACTCAAGGAAGAAG+AGG | + | Chr4:77710120-77710139 | MsG0480022866.01.T01:CDS | 45.0% | |
| CCATTTGCATTAGTGAAGCC+AGG | + | Chr4:77709937-77709956 | MsG0480022866.01.T01:CDS | 45.0% | |
| CCTGGCTTCACTAATGCAAA+TGG | - | Chr4:77709940-77709959 | None:intergenic | 45.0% | |
| GGATCTTAATGCCTCCAACA+AGG | + | Chr4:77710001-77710020 | MsG0480022866.01.T01:CDS | 45.0% | |
| TTGCAGTCACAATTACGCTG+CGG | + | Chr4:77709672-77709691 | MsG0480022866.01.T01:intron | 45.0% | |
| TTTGCATTAGTGAAGCCAGG+AGG | + | Chr4:77709940-77709959 | MsG0480022866.01.T01:CDS | 45.0% | |
| !! | CAGTTGGTGACTTTGCATGT+CGG | + | Chr4:77710037-77710056 | MsG0480022866.01.T01:CDS | 45.0% |
| !!! | ATATTTATAGTTTTAATTTA+TGG | - | Chr4:77709802-77709821 | None:intergenic | 5.0% |
| !!! | TATTATTTTAATTTACTAAT+TGG | + | Chr4:77709409-77709428 | MsG0480022866.01.T01:intron | 5.0% |
| ACATCACCTTCTTCTCCTCC+TGG | - | Chr4:77709958-77709977 | None:intergenic | 50.0% | |
| CGACATGCAAAGTCACCAAC+TGG | - | Chr4:77710039-77710058 | None:intergenic | 50.0% | |
| GCACATTGCAACCGCAATTG+TGG | - | Chr4:77709727-77709746 | None:intergenic | 50.0% | |
| TCACCAACTGGATGCCTTAC+TGG | - | Chr4:77710027-77710046 | None:intergenic | 50.0% | |
| TGCCTCTTCTTCCTTGAGTG+TGG | - | Chr4:77710125-77710144 | None:intergenic | 50.0% | |
| !! | CCACTGGTTGGTGCCATATA+GGG | - | Chr4:77709003-77709022 | None:intergenic | 50.0% |
| !! | TCCACTGGTTGGTGCCATAT+AGG | - | Chr4:77709004-77709023 | None:intergenic | 50.0% |
| ACTGCTTTGCCTGAAAGGCC+TGG | - | Chr4:77710084-77710103 | None:intergenic | 55.0% | |
| AGGCCTTTCAGGCAAAGCAG+TGG | + | Chr4:77710083-77710102 | MsG0480022866.01.T01:CDS | 55.0% | |
| CCACCACTGCTTTGCCTGAA+AGG | - | Chr4:77710089-77710108 | None:intergenic | 55.0% | |
| CCCTATATGGCACCAACCAG+TGG | + | Chr4:77709000-77709019 | MsG0480022866.01.T01:CDS | 55.0% | |
| CCTTTCAGGCAAAGCAGTGG+TGG | + | Chr4:77710086-77710105 | MsG0480022866.01.T01:CDS | 55.0% | |
| GGACCTTGTGCAGATACGCA+TGG | - | Chr4:77710063-77710082 | None:intergenic | 55.0% | |
| GTGAAGCCAGGAGGAGAAGA+AGG | + | Chr4:77709949-77709968 | MsG0480022866.01.T01:CDS | 55.0% | |
| TGCCTCCAACAAGGCCAGTA+AGG | + | Chr4:77710010-77710029 | MsG0480022866.01.T01:CDS | 55.0% | |
| TGCGTATCTGCACAAGGTCC+AGG | + | Chr4:77710063-77710082 | MsG0480022866.01.T01:CDS | 55.0% | |
| ! | AGGCCAGTAAGGCATCCAGT+TGG | + | Chr4:77710021-77710040 | MsG0480022866.01.T01:CDS | 55.0% |
| !! | GGATGCCTTACTGGCCTTGT+TGG | - | Chr4:77710018-77710037 | None:intergenic | 55.0% |
| !! | TGCCTTACTGGCCTTGTTGG+AGG | - | Chr4:77710015-77710034 | None:intergenic | 55.0% |
| !!! | TGGGGTGTCTCTGCTGGTTT+TGG | - | Chr4:77709605-77709624 | None:intergenic | 55.0% |
| ACCAGCAGAGACACCCCACT+TGG | + | Chr4:77709607-77709626 | MsG0480022866.01.T01:CDS | 60.0% | |
| CGGCCATGCGTATCTGCACA+AGG | + | Chr4:77710057-77710076 | MsG0480022866.01.T01:CDS | 60.0% | |
| GCACAAGGTCCAGGCCTTTC+AGG | + | Chr4:77710072-77710091 | MsG0480022866.01.T01:CDS | 60.0% | |
| ! | ACCAAGTGGGGTGTCTCTGC+TGG | - | Chr4:77709611-77709630 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 77708685 | 77710429 | 77708685 | ID=MsG0480022866.01;Name=MsG0480022866.01 |
| Chr4 | mRNA | 77708685 | 77710429 | 77708685 | ID=MsG0480022866.01.T01;Parent=MsG0480022866.01;Name=MsG0480022866.01.T01;_AED=0.26;_eAED=0.28;_QI=0|1|0.75|1|1|1|4|256|259 |
| Chr4 | exon | 77708685 | 77708885 | 77708685 | ID=MsG0480022866.01.T01:exon:4891;Parent=MsG0480022866.01.T01 |
| Chr4 | exon | 77708986 | 77709070 | 77708986 | ID=MsG0480022866.01.T01:exon:4892;Parent=MsG0480022866.01.T01 |
| Chr4 | exon | 77709452 | 77709628 | 77709452 | ID=MsG0480022866.01.T01:exon:4893;Parent=MsG0480022866.01.T01 |
| Chr4 | exon | 77709857 | 77710429 | 77709857 | ID=MsG0480022866.01.T01:exon:4894;Parent=MsG0480022866.01.T01 |
| Chr4 | CDS | 77708685 | 77708885 | 77708685 | ID=MsG0480022866.01.T01:cds;Parent=MsG0480022866.01.T01 |
| Chr4 | CDS | 77708986 | 77709070 | 77708986 | ID=MsG0480022866.01.T01:cds;Parent=MsG0480022866.01.T01 |
| Chr4 | CDS | 77709452 | 77709628 | 77709452 | ID=MsG0480022866.01.T01:cds;Parent=MsG0480022866.01.T01 |
| Chr4 | CDS | 77709857 | 77710173 | 77709857 | ID=MsG0480022866.01.T01:cds;Parent=MsG0480022866.01.T01 |
| Chr4 | three_prime_UTR | 77710174 | 77710429 | 77710174 | ID=MsG0480022866.01.T01:three_prime_utr;Parent=MsG0480022866.01.T01 |
| Gene Sequence |
| Protein sequence |
