AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035618.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035618.01.T01 MTR_6g086560 93.793 145 9 0 13 157 50 194 7.65e-99 286
MsG0680035618.01.T01 MTR_3g045440 61.806 144 54 1 14 157 42 184 2.10e-65 201
MsG0680035618.01.T01 MTR_1g018320 43.357 143 78 3 14 155 40 180 8.24e-38 130
MsG0680035618.01.T01 MTR_4g095310 39.161 143 84 3 14 155 38 178 2.33e-29 108
MsG0680035618.01.T01 MTR_5g016150 38.462 143 85 3 14 155 38 178 1.42e-27 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035618.01.T01 AT3G24420 58.273 139 58 0 19 157 48 186 4.78e-57 179
MsG0680035618.01.T01 AT3G03990 43.662 142 78 2 14 155 40 179 3.38e-38 131
MsG0680035618.01.T01 AT4G37470 39.161 143 84 3 14 155 38 178 1.89e-29 108

Find 62 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTCTTTCTTTAATTA+TGG 0.173279 6:-109429883 MsG0680035618.01.T01:five_prime_UTR
TAGAATCCAACTATGAAAAT+TGG 0.176582 6:-109426925 MsG0680035618.01.T01:CDS
TCAAAGGGTCATAAAGATTT+TGG 0.191944 6:+109429651 None:intergenic
AGATGACTTGATCAGTTTAT+TGG 0.223698 6:-109429603 MsG0680035618.01.T01:CDS
TACATGGAGAAGAAAATTAA+AGG 0.257111 6:-109426688 MsG0680035618.01.T01:three_prime_UTR
TTCACTGACGGTTCATCATT+TGG 0.283045 6:+109426872 None:intergenic
TTGGAAGTAATTGACACTTT+TGG 0.304639 6:-109426655 MsG0680035618.01.T01:three_prime_UTR
GTCATTGCAAAACACTGTTT+TGG 0.306816 6:+109426797 None:intergenic
TCTTTAACAGCACCAGAAAA+AGG 0.312331 6:+109429674 None:intergenic
TTATGTGTAGTATAATTCTA+TGG 0.319059 6:-109426467 MsG0680035618.01.T01:three_prime_UTR
ATGAGGCATTCATACTAATA+TGG 0.323923 6:+109426280 None:intergenic
TTCAAGAGGCTTATTCTTGT+TGG 0.325449 6:-109429491 MsG0680035618.01.T01:CDS
CATCGAATTGAAGGCGAGTT+TGG 0.327708 6:-109426381 MsG0680035618.01.T01:three_prime_UTR
TCAGCTAGTTGATGTGCTTA+AGG 0.333933 6:-109426605 MsG0680035618.01.T01:three_prime_UTR
ATGGAACAGACCAATCAATA+TGG 0.335818 6:-109429752 MsG0680035618.01.T01:CDS
ATAGAGTTGTTCTATTTGAT+TGG 0.343427 6:-109429697 MsG0680035618.01.T01:CDS
CTTAAAGTTGTTAACTTTGT+TGG 0.343903 6:-109429569 MsG0680035618.01.T01:CDS
AACATGTTTGGTTTGGTGTT+TGG 0.345702 6:+109429858 None:intergenic
ATGTAGAGAGCTACACTATA+TGG 0.346840 6:+109426706 None:intergenic
TTTGTTGGTCATTCCATGTC+TGG 0.352708 6:-109429554 MsG0680035618.01.T01:CDS
CAGCTAGTTGATGTGCTTAA+GGG 0.371050 6:-109426604 MsG0680035618.01.T01:three_prime_UTR
TTATGCTGTTCTAACATGTT+TGG 0.379798 6:+109429846 None:intergenic
GATCAGTTTATTGGATCAAA+TGG 0.398901 6:-109429594 MsG0680035618.01.T01:CDS
CATTCCATGTCTGGTATGAT+TGG 0.407416 6:-109429545 MsG0680035618.01.T01:CDS
AGAATCCAACTATGAAAATT+GGG 0.411548 6:-109426924 MsG0680035618.01.T01:CDS
ATTTGGATCCACTACATTTG+TGG 0.429468 6:+109426889 None:intergenic
CTGTTCTAACATGTTTGGTT+TGG 0.431637 6:+109429851 None:intergenic
CTTCTGAATGCTAGAATCCT+AGG 0.449257 6:-109429810 MsG0680035618.01.T01:five_prime_UTR
AATGCTAGAATCCTAGGAAC+AGG 0.457236 6:-109429804 MsG0680035618.01.T01:five_prime_UTR
ACTAAACATAGCTAAGTTCA+AGG 0.458492 6:+109426559 None:intergenic
TAGTTTCTGTTCCTGTTCCT+AGG 0.461589 6:+109429793 None:intergenic
CTAAAGAAGAATACTTCAAA+GGG 0.474943 6:+109429636 None:intergenic
TATAAATACAGATGACTATG+AGG 0.480351 6:-109426990 MsG0680035618.01.T01:CDS
ACATGGAGAAGAAAATTAAA+GGG 0.480634 6:-109426687 MsG0680035618.01.T01:three_prime_UTR
AATTAAAGGGAAAGTTACAT+TGG 0.494880 6:-109426674 MsG0680035618.01.T01:three_prime_UTR
TTCTTGTTGGTGCTTCCCCA+AGG 0.507570 6:-109429478 MsG0680035618.01.T01:intron
TTATTTCTCCACAAATGTAG+TGG 0.511610 6:-109426897 MsG0680035618.01.T01:CDS
GCACCGACACATCGAATTGA+AGG 0.520853 6:-109426418 MsG0680035618.01.T01:three_prime_UTR
TCTAAAGAAGAATACTTCAA+AGG 0.526059 6:+109429635 None:intergenic
GCACCGACACATCGAATTGA+AGG 0.526077 6:-109426390 MsG0680035618.01.T01:three_prime_UTR
AGCACATCAACTAGCTGAAG+TGG 0.527501 6:+109426610 None:intergenic
TGGAACAGACCAATCAATAT+GGG 0.528463 6:-109429751 MsG0680035618.01.T01:CDS
CTCCCTTCAATTCGATGTGT+CGG 0.533273 6:+109426415 None:intergenic
AAATGAATGAAGTGGAAGAG+AGG 0.548449 6:+109429918 None:intergenic
TCTCTGAATTTGTTCACTGA+CGG 0.550900 6:+109426860 None:intergenic
ACACATACCACACATCTATG+AGG 0.564386 6:+109426263 None:intergenic
ATAAGCCTCTTGAAAAGTTG+AGG 0.571930 6:+109429500 None:intergenic
ATGTCTAACATCAACATATG+TGG 0.573967 6:-109426343 MsG0680035618.01.T01:three_prime_UTR
ATATAGTGTAGCTCTCTACA+TGG 0.592180 6:-109426704 MsG0680035618.01.T01:three_prime_UTR
ACAACCAATCATACCAGACA+TGG 0.594195 6:+109429541 None:intergenic
TCGCCTTCAATTCGATGTGT+CGG 0.601438 6:+109426387 None:intergenic
CTAAACATAGCTAAGTTCAA+GGG 0.604175 6:+109426560 None:intergenic
GTAAAATTAAATGTGACTGA+AGG 0.608572 6:+109426503 None:intergenic
ACTAGAAACAATAGAATGTG+TGG 0.609328 6:+109429943 None:intergenic
TGAAGTGGAGCAGTTAGTTG+AGG 0.612568 6:+109426625 None:intergenic
ATAAATACAGATGACTATGA+GGG 0.625313 6:-109426989 MsG0680035618.01.T01:CDS
TATGGAACAACCATGTCACT+AGG 0.629039 6:+109426724 None:intergenic
CACCGACACATCGAATTGAA+GGG 0.629302 6:-109426417 MsG0680035618.01.T01:three_prime_UTR
TGTTAGACATTAACACGTGT+AGG 0.652519 6:+109426356 None:intergenic
TTATTCAAAACCTAGTGACA+TGG 0.654295 6:-109426734 MsG0680035618.01.T01:three_prime_UTR
AATACAGATGACTATGAGGG+AGG 0.668351 6:-109426986 MsG0680035618.01.T01:CDS
ATGAATGCCTCATAGATGTG+TGG 0.727783 6:-109426270 MsG0680035618.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAATTAATATTCTTAT+AGG + Chr6:109427416-109427435 None:intergenic 10.0%
!! TAAAGAATAAAATAACTATA+TGG - Chr6:109428023-109428042 MsG0680035618.01.T01:intron 10.0%
!! TAGTAATTAATATTCTTATA+GGG + Chr6:109427415-109427434 None:intergenic 10.0%
!!! AAAAGTCATAAATTTTTTTT+TGG - Chr6:109427579-109427598 MsG0680035618.01.T01:intron 10.0%
!!! CATAAAATAGTTTAAATTTT+AGG - Chr6:109427345-109427364 MsG0680035618.01.T01:intron 10.0%
!!! TTATTCTTTTTTTTTTTTTG+AGG + Chr6:109429133-109429152 None:intergenic 10.0%
!! AATAGATAATTATAAACATG+TGG + Chr6:109428536-109428555 None:intergenic 15.0%
!! AATTTAGATCTTCAAATTAT+AGG - Chr6:109427618-109427637 MsG0680035618.01.T01:intron 15.0%
!!! AAAATCTTTCTTTTATATGT+GGG - Chr6:109428123-109428142 MsG0680035618.01.T01:intron 15.0%
!!! AATTTAGAATTGAAATGAAA+TGG - Chr6:109427284-109427303 MsG0680035618.01.T01:intron 15.0%
!!! ATTTATACTTTTTTTTGTGT+CGG + Chr6:109428179-109428198 None:intergenic 15.0%
!!! CTCTATATTTTATTTTTTGT+CGG + Chr6:109428323-109428342 None:intergenic 15.0%
!!! TAGTTTTTTTCAGTAAAATA+AGG + Chr6:109426469-109426488 None:intergenic 15.0%
!!! TATTTTTATTTGTTAGTTAG+AGG + Chr6:109428357-109428376 None:intergenic 15.0%
!! AAAAATGACAAATGTTAGAA+AGG + Chr6:109427211-109427230 None:intergenic 20.0%
!! AAAATGACAAATGTTAGAAA+GGG + Chr6:109427210-109427229 None:intergenic 20.0%
!! AAACTAGAGATTTAGTAAAA+AGG + Chr6:109427546-109427565 None:intergenic 20.0%
!! AATAATTATAGTGATGTAAG+TGG + Chr6:109428402-109428421 None:intergenic 20.0%
!! AATTAATATTCTTATAGGGA+TGG + Chr6:109427411-109427430 None:intergenic 20.0%
!! ACAATAACTTTACATTTCAA+AGG + Chr6:109427069-109427088 None:intergenic 20.0%
!! AGAATAAAATAACTATATGG+TGG - Chr6:109428026-109428045 MsG0680035618.01.T01:intron 20.0%
!! AGTATATAACAATATACCTT+GGG + Chr6:109426726-109426745 None:intergenic 20.0%
!! ATAATTATAGTGATGTAAGT+GGG + Chr6:109428401-109428420 None:intergenic 20.0%
!! TAATTACTATATAGATGTGA+TGG - Chr6:109427426-109427445 MsG0680035618.01.T01:intron 20.0%
!! TAGTAAAAAGGAAAATACTT+TGG + Chr6:109427534-109427553 None:intergenic 20.0%
!! TATTAAAAGATAAACGTCTT+AGG + Chr6:109429066-109429085 None:intergenic 20.0%
!! TCTTTCTCTTTCTTTAATTA+TGG - Chr6:109426302-109426321 MsG0680035618.01.T01:three_prime_UTR 20.0%
!! TTATGTGTAGTATAATTCTA+TGG - Chr6:109429718-109429737 MsG0680035618.01.T01:CDS 20.0%
!!! AAACTTTTATAAAGTGTGAT+TGG - Chr6:109428429-109428448 MsG0680035618.01.T01:intron 20.0%
!!! AACTATTTTATGATACTACA+AGG + Chr6:109427337-109427356 None:intergenic 20.0%
!!! ATGTAAAGTTATTGTTTTCT+AGG - Chr6:109427074-109427093 MsG0680035618.01.T01:intron 20.0%
!!! CAAAATCTTTCTTTTATATG+TGG - Chr6:109428122-109428141 MsG0680035618.01.T01:intron 20.0%
!!! GTCATAAATTTTTTTTTGGA+AGG - Chr6:109427583-109427602 MsG0680035618.01.T01:intron 20.0%
!!! TAGTTTAAATTTTAGGGAAT+TGG - Chr6:109427352-109427371 MsG0680035618.01.T01:intron 20.0%
!!! TCACTGAAAATTTTTTTGAA+AGG - Chr6:109427715-109427734 MsG0680035618.01.T01:intron 20.0%
! AAAAAGGAAAATACTTTGGT+TGG + Chr6:109427530-109427549 None:intergenic 25.0%
! AAAAGGAAAATACTTTGGTT+GGG + Chr6:109427529-109427548 None:intergenic 25.0%
! AAATCTTAAGAACAGATACT+TGG + Chr6:109427829-109427848 None:intergenic 25.0%
! AAGTATGTATACTCATTTGT+AGG - Chr6:109428766-109428785 MsG0680035618.01.T01:intron 25.0%
! AATCTCTTTGGATTTATACA+AGG + Chr6:109428509-109428528 None:intergenic 25.0%
! AATTAAAGGGAAAGTTACAT+TGG - Chr6:109429511-109429530 MsG0680035618.01.T01:CDS 25.0%
! ACATGGAGAAGAAAATTAAA+GGG - Chr6:109429498-109429517 MsG0680035618.01.T01:CDS 25.0%
! AGAATCCAACTATGAAAATT+GGG - Chr6:109429261-109429280 MsG0680035618.01.T01:intron 25.0%
! ATAAATACAGATGACTATGA+GGG - Chr6:109429196-109429215 MsG0680035618.01.T01:intron 25.0%
! ATAGAGTTGTTCTATTTGAT+TGG - Chr6:109426488-109426507 MsG0680035618.01.T01:three_prime_UTR 25.0%
! ATAGATAATGCTAAGATGTT+AGG - Chr6:109428066-109428085 MsG0680035618.01.T01:intron 25.0%
! ATTTATACAAGGAAATGTCT+TGG + Chr6:109428498-109428517 None:intergenic 25.0%
! CACAATATAAGATGATTCAA+TGG + Chr6:109428888-109428907 None:intergenic 25.0%
! CTAAAGAAGAATACTTCAAA+GGG + Chr6:109426552-109426571 None:intergenic 25.0%
! CTTAAAGTTGTTAACTTTGT+TGG - Chr6:109426616-109426635 MsG0680035618.01.T01:three_prime_UTR 25.0%
! GAGTATATAACAATATACCT+TGG + Chr6:109426727-109426746 None:intergenic 25.0%
! GTAAAATTAAATGTGACTGA+AGG + Chr6:109429685-109429704 None:intergenic 25.0%
! GTAATAGACTATATGAGATA+AGG - Chr6:109427488-109427507 MsG0680035618.01.T01:intron 25.0%
! GTATATAACAATATACCTTG+GGG + Chr6:109426725-109426744 None:intergenic 25.0%
! TAATTATAGTGATGTAAGTG+GGG + Chr6:109428400-109428419 None:intergenic 25.0%
! TACATGGAGAAGAAAATTAA+AGG - Chr6:109429497-109429516 MsG0680035618.01.T01:CDS 25.0%
! TAGAAGAAAAATGAATGAAG+TGG + Chr6:109426278-109426297 None:intergenic 25.0%
! TAGAATCCAACTATGAAAAT+TGG - Chr6:109429260-109429279 MsG0680035618.01.T01:intron 25.0%
! TATAAATACAGATGACTATG+AGG - Chr6:109429195-109429214 MsG0680035618.01.T01:intron 25.0%
! TCTAAAGAAGAATACTTCAA+AGG + Chr6:109426553-109426572 None:intergenic 25.0%
! TGGTTCATTCAAATTTCAAA+AGG + Chr6:109428464-109428483 None:intergenic 25.0%
! TTCATTCAAATTTCAAAAGG+AGG + Chr6:109428461-109428480 None:intergenic 25.0%
!! AAAATAGAGATGTCAACTTT+TGG - Chr6:109428637-109428656 MsG0680035618.01.T01:intron 25.0%
!! ACCTAAAAGTTTCTTTTTGT+TGG + Chr6:109428568-109428587 None:intergenic 25.0%
!! ATCTGTTCTTAAGATTTTAG+TGG - Chr6:109427832-109427851 MsG0680035618.01.T01:intron 25.0%
!! CCTAAAAGTTTCTTTTTGTT+GGG + Chr6:109428567-109428586 None:intergenic 25.0%
!! TATGTTGTGATTCCTTTTTA+AGG - Chr6:109427963-109427982 MsG0680035618.01.T01:intron 25.0%
!!! CTTTGTTTGTTATTGTTACT+TGG - Chr6:109426971-109426990 MsG0680035618.01.T01:CDS 25.0%
!!! TTTGGTGTCATTAAAAACTT+TGG - Chr6:109428655-109428674 MsG0680035618.01.T01:intron 25.0%
!!! TTTTTAAGGTGAATTTGATG+CGG - Chr6:109427977-109427996 MsG0680035618.01.T01:intron 25.0%
AAAGGAAAATACTTTGGTTG+GGG + Chr6:109427528-109427547 None:intergenic 30.0%
AATGAACCAACCAAAACATA+TGG - Chr6:109427888-109427907 MsG0680035618.01.T01:intron 30.0%
ACTAAACATAGCTAAGTTCA+AGG + Chr6:109429629-109429648 None:intergenic 30.0%
ACTAGAAACAATAGAATGTG+TGG + Chr6:109426245-109426264 None:intergenic 30.0%
AGATGACTTGATCAGTTTAT+TGG - Chr6:109426582-109426601 MsG0680035618.01.T01:three_prime_UTR 30.0%
ATGTCTAACATCAACATATG+TGG - Chr6:109429842-109429861 MsG0680035618.01.T01:five_prime_UTR 30.0%
CAAACAAAGAACATAGTTAC+AGG + Chr6:109426960-109426979 None:intergenic 30.0%
CTAAACATAGCTAAGTTCAA+GGG + Chr6:109429628-109429647 None:intergenic 30.0%
CTCATATAGTCTATTACAAG+TGG + Chr6:109427485-109427504 None:intergenic 30.0%
GATCAGTTTATTGGATCAAA+TGG - Chr6:109426591-109426610 MsG0680035618.01.T01:three_prime_UTR 30.0%
GCATCAAATTCACCTTAAAA+AGG + Chr6:109427978-109427997 None:intergenic 30.0%
TGTGTCTATCTTAGAGAAAT+TGG + Chr6:109428692-109428711 None:intergenic 30.0%
TTATGCTGTTCTAACATGTT+TGG + Chr6:109426342-109426361 None:intergenic 30.0%
TTATTCAAAACCTAGTGACA+TGG - Chr6:109429451-109429470 MsG0680035618.01.T01:intron 30.0%
! AGAAACCCAATTTTCATAGT+TGG + Chr6:109429269-109429288 None:intergenic 30.0%
! ATAGTTTTTGCTCATGGTTA+TGG - Chr6:109426414-109426433 MsG0680035618.01.T01:three_prime_UTR 30.0%
! ATGAGGCATTCATACTAATA+TGG + Chr6:109429908-109429927 None:intergenic 30.0%
! CCCAACAAAAAGAAACTTTT+AGG - Chr6:109428564-109428583 MsG0680035618.01.T01:intron 30.0%
! GAAAAGTTGAGGTCTTTTAA+TGG + Chr6:109426677-109426696 None:intergenic 30.0%
! GAAACTATAGTTTTTGCTCA+TGG - Chr6:109426408-109426427 MsG0680035618.01.T01:three_prime_UTR 30.0%
! TCAAAGGGTCATAAAGATTT+TGG + Chr6:109426537-109426556 None:intergenic 30.0%
! TGATTTTGTCCCATATTGAT+TGG + Chr6:109426446-109426465 None:intergenic 30.0%
! TTATTTCTCCACAAATGTAG+TGG - Chr6:109429288-109429307 MsG0680035618.01.T01:intron 30.0%
! TTGGAAGTAATTGACACTTT+TGG - Chr6:109429530-109429549 MsG0680035618.01.T01:CDS 30.0%
!!! AGGTTTTGAATAATTGTGCA+TGG + Chr6:109429444-109429463 None:intergenic 30.0%
AAATGAATGAAGTGGAAGAG+AGG + Chr6:109426270-109426289 None:intergenic 35.0%
ACATGTGGAAGAAATCTCTT+TGG + Chr6:109428521-109428540 None:intergenic 35.0%
AGGGAATATATGCATGTTAG+AGG + Chr6:109427191-109427210 None:intergenic 35.0%
ATAAGCCTCTTGAAAAGTTG+AGG + Chr6:109426688-109426707 None:intergenic 35.0%
ATATAGTGTAGCTCTCTACA+TGG - Chr6:109429481-109429500 MsG0680035618.01.T01:CDS 35.0%
ATGGAACAGACCAATCAATA+TGG - Chr6:109426433-109426452 MsG0680035618.01.T01:three_prime_UTR 35.0%
ATGTAGAGAGCTACACTATA+TGG + Chr6:109429482-109429501 None:intergenic 35.0%
ATGTTAGAGGAGAACAACAA+AGG + Chr6:109427178-109427197 None:intergenic 35.0%
ATTTGGATCCACTACATTTG+TGG + Chr6:109429299-109429318 None:intergenic 35.0%
CATTTCAAAGGAGAAAGAAG+AGG + Chr6:109427057-109427076 None:intergenic 35.0%
CTGTTCTAACATGTTTGGTT+TGG + Chr6:109426337-109426356 None:intergenic 35.0%
GGAGAACAACAAAGGAAAAA+AGG + Chr6:109427170-109427189 None:intergenic 35.0%
TCTTTAACAGCACCAGAAAA+AGG + Chr6:109426514-109426533 None:intergenic 35.0%
TGGAACAGACCAATCAATAT+GGG - Chr6:109426434-109426453 MsG0680035618.01.T01:three_prime_UTR 35.0%
TGTATACTCATTTGTAGGTC+AGG - Chr6:109428771-109428790 MsG0680035618.01.T01:intron 35.0%
TGTTAGACATTAACACGTGT+AGG + Chr6:109429832-109429851 None:intergenic 35.0%
TTCAAGAGGCTTATTCTTGT+TGG - Chr6:109426694-109426713 MsG0680035618.01.T01:three_prime_UTR 35.0%
TTGACAATGCTAAGATCGTT+AGG - Chr6:109428210-109428229 MsG0680035618.01.T01:intron 35.0%
! ATTTGTTAGTTAGAGGCATG+TGG + Chr6:109428350-109428369 None:intergenic 35.0%
! GTCATTGCAAAACACTGTTT+TGG + Chr6:109429391-109429410 None:intergenic 35.0%
! TCTCTGAATTTGTTCACTGA+CGG + Chr6:109429328-109429347 None:intergenic 35.0%
! TTACAAGTGGCTAGTTCATT+TGG + Chr6:109427472-109427491 None:intergenic 35.0%
!! AAAGACCTCAACTTTTCAAG+AGG - Chr6:109426680-109426699 MsG0680035618.01.T01:three_prime_UTR 35.0%
!! AACATGTTTGGTTTGGTGTT+TGG + Chr6:109426330-109426349 None:intergenic 35.0%
!! AGAAACTTTTAGGTACAGCT+AGG - Chr6:109428574-109428593 MsG0680035618.01.T01:intron 35.0%
!!! ATGTGCTTAAGGGTGTTTTA+GGG - Chr6:109429591-109429610 MsG0680035618.01.T01:CDS 35.0%
!!! CTATTTGATTGGCCTTTTTC+TGG - Chr6:109426499-109426518 MsG0680035618.01.T01:three_prime_UTR 35.0%
AATACAGATGACTATGAGGG+AGG - Chr6:109429199-109429218 MsG0680035618.01.T01:intron 40.0%
AATGCTAGAATCCTAGGAAC+AGG - Chr6:109426381-109426400 MsG0680035618.01.T01:three_prime_UTR 40.0%
ACAACCAATCATACCAGACA+TGG + Chr6:109426647-109426666 None:intergenic 40.0%
ACACATACCACACATCTATG+AGG + Chr6:109429925-109429944 None:intergenic 40.0%
ATACAAGGAAATGTCTTGGC+CGG + Chr6:109428494-109428513 None:intergenic 40.0%
ATGAATGCCTCATAGATGTG+TGG - Chr6:109429915-109429934 MsG0680035618.01.T01:five_prime_UTR 40.0%
CATCTGATGTCAAGTGTGAA+CGG + Chr6:109428799-109428818 None:intergenic 40.0%
CATTCCATGTCTGGTATGAT+TGG - Chr6:109426640-109426659 MsG0680035618.01.T01:three_prime_UTR 40.0%
CTTCTGAATGCTAGAATCCT+AGG - Chr6:109426375-109426394 MsG0680035618.01.T01:three_prime_UTR 40.0%
TAGTTTCTGTTCCTGTTCCT+AGG + Chr6:109426395-109426414 None:intergenic 40.0%
TATGGAACAACCATGTCACT+AGG + Chr6:109429464-109429483 None:intergenic 40.0%
TTCACTGACGGTTCATCATT+TGG + Chr6:109429316-109429335 None:intergenic 40.0%
TTCTTCCCAAAATACTGCCT+AGG - Chr6:109427381-109427400 MsG0680035618.01.T01:intron 40.0%
TTGAATGAACCACCATTAGC+CGG - Chr6:109428472-109428491 MsG0680035618.01.T01:intron 40.0%
TTTGTTGGTCATTCCATGTC+TGG - Chr6:109426631-109426650 MsG0680035618.01.T01:three_prime_UTR 40.0%
! ACATATGGTGTCAGTAGGAT+TGG - Chr6:109427903-109427922 MsG0680035618.01.T01:intron 40.0%
! CAGCTAGTTGATGTGCTTAA+GGG - Chr6:109429581-109429600 MsG0680035618.01.T01:CDS 40.0%
! CATATGGTGTCAGTAGGATT+GGG - Chr6:109427904-109427923 MsG0680035618.01.T01:intron 40.0%
! CCAAAACATATGGTGTCAGT+AGG - Chr6:109427898-109427917 MsG0680035618.01.T01:intron 40.0%
! CCTACTGACACCATATGTTT+TGG + Chr6:109427901-109427920 None:intergenic 40.0%
! GAAGTCCTAGGCAGTATTTT+GGG + Chr6:109427389-109427408 None:intergenic 40.0%
! TCAGCTAGTTGATGTGCTTA+AGG - Chr6:109429580-109429599 MsG0680035618.01.T01:CDS 40.0%
!!! ACTGTTTTGGCTAAGGACAA+TGG + Chr6:109429378-109429397 None:intergenic 40.0%
!!! CTGACACCATATGTTTTGGT+TGG + Chr6:109427897-109427916 None:intergenic 40.0%
!!! GATGTGCTTAAGGGTGTTTT+AGG - Chr6:109429590-109429609 MsG0680035618.01.T01:CDS 40.0%
!!! GCAAAACACTGTTTTGGCTA+AGG + Chr6:109429385-109429404 None:intergenic 40.0%
AGCACATCAACTAGCTGAAG+TGG + Chr6:109429578-109429597 None:intergenic 45.0%
CACCGACACATCGAATTGAA+GGG - Chr6:109429768-109429787 MsG0680035618.01.T01:exon 45.0%
CATCGAATTGAAGGCGAGTT+TGG - Chr6:109429804-109429823 MsG0680035618.01.T01:five_prime_UTR 45.0%
CTCCCTTCAATTCGATGTGT+CGG + Chr6:109429773-109429792 None:intergenic 45.0%
CTTATAGGGATGGAAGTCCT+AGG + Chr6:109427401-109427420 None:intergenic 45.0%
TAAGGTGAATTTGATGCGGC+TGG - Chr6:109427981-109428000 MsG0680035618.01.T01:intron 45.0%
TCGCCTTCAATTCGATGTGT+CGG + Chr6:109429801-109429820 None:intergenic 45.0%
TGAAGTGGAGCAGTTAGTTG+AGG + Chr6:109429563-109429582 None:intergenic 45.0%
! GGAAGTCCTAGGCAGTATTT+TGG + Chr6:109427390-109427409 None:intergenic 45.0%
! TGGCTAGTTCATTTGGCATG+AGG + Chr6:109427465-109427484 None:intergenic 45.0%
!!! ATAAAATAGTTTAAATTTTA+GGG - Chr6:109427346-109427365 MsG0680035618.01.T01:intron 5.0%
!!! ATTTTATTCTTTAATTTTTA+TGG + Chr6:109428016-109428035 None:intergenic 5.0%
!!! TTTAAATTTTATTTAATTTC+AGG + Chr6:109427662-109427681 None:intergenic 5.0%
GAAATGTCTTGGCCGGCTAA+TGG + Chr6:109428487-109428506 None:intergenic 50.0%
GTCAGTAGGATTGGGTGAGA+GGG - Chr6:109427912-109427931 MsG0680035618.01.T01:intron 50.0%
TCAGTAGGATTGGGTGAGAG+GGG - Chr6:109427913-109427932 MsG0680035618.01.T01:intron 50.0%
TGTCAGTAGGATTGGGTGAG+AGG - Chr6:109427911-109427930 MsG0680035618.01.T01:intron 50.0%
! GCACCGACACATCGAATTGA+AGG - Chr6:109429767-109429786 MsG0680035618.01.T01:exon 50.0%
! TTCTTGTTGGTGCTTCCCCA+AGG - Chr6:109426707-109426726 MsG0680035618.01.T01:three_prime_UTR 50.0%
ATGTCTTGGCCGGCTAATGG+TGG + Chr6:109428484-109428503 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 109426232 109429975 109426232 ID=MsG0680035618.01;Name=MsG0680035618.01
Chr6 mRNA 109426232 109429975 109426232 ID=MsG0680035618.01.T01;Parent=MsG0680035618.01;Name=MsG0680035618.01.T01;_AED=0.33;_eAED=0.33;_QI=195|1|1|1|1|1|2|612|157
Chr6 exon 109426232 109427015 109426232 ID=MsG0680035618.01.T01:exon:14622;Parent=MsG0680035618.01.T01
Chr6 exon 109429479 109429975 109429479 ID=MsG0680035618.01.T01:exon:14621;Parent=MsG0680035618.01.T01
Chr6 five_prime_UTR 109429781 109429975 109429781 ID=MsG0680035618.01.T01:five_prime_utr;Parent=MsG0680035618.01.T01
Chr6 CDS 109429479 109429780 109429479 ID=MsG0680035618.01.T01:cds;Parent=MsG0680035618.01.T01
Chr6 CDS 109426844 109427015 109426844 ID=MsG0680035618.01.T01:cds;Parent=MsG0680035618.01.T01
Chr6 three_prime_UTR 109426232 109426843 109426232 ID=MsG0680035618.01.T01:three_prime_utr;Parent=MsG0680035618.01.T01
Gene Sequence

>MsG0680035618.01.T01

ATGGTTATGGAACAGACCAATCAATATGGGACAAAATCACCTTATTTTACTGAAAAAAACTATAGAGTTGTTCTATTTGATTGGCCTTTTTCTGGTGCTGTTAAAGACCAAAATCTTTATGACCCTTTGAAGTATTCTTCTTTAGATGCTTTTGCAGATGACTTGATCAGTTTATTGGATCAAATGGAGCTTAAAGTTGTTAACTTTGTTGGTCATTCCATGTCTGGTATGATTGGTTGTTTAGCTTCCATTAAAAGACCTCAACTTTTCAAGAGGCTTATTCTTGTTGGTGCTTCCCCAAGATATATAAATACAGATGACTATGAGGGAGGATTTACAAGCTCAGATATTGAGAATTTATTGAAGAACATAGAATCCAACTATGAAAATTGGGTTTCTTATTTCTCCACAAATGTAGTGGATCCAAATGATGAACCGTCAGTGAACAAATTCAGAGAGTGTTTGAAAAAATGA
Protein sequence

>MsG0680035618.01.T01

MVMEQTNQYGTKSPYFTEKNYRVVLFDWPFSGAVKDQNLYDPLKYSSLDAFADDLISLLDQMELKVVNFVGHSMSGMIGCLASIKRPQLFKRLILVGASPRYINTDDYEGGFTSSDIENLLKNIESNYENWVSYFSTNVVDPNDEPSVNKFRECLKK*