AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014750.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014750.01.T01 MTR_3g463450 96.262 321 11 1 1 321 194 513 0.0 620
MsG0380014750.01.T01 MTR_5g082130 49.057 159 73 2 166 316 252 410 1.35e-44 157
MsG0380014750.01.T01 MTR_5g082130 55.405 74 33 0 1 74 150 223 4.65e-20 90.5
MsG0380014750.01.T01 MTR_2g103795 41.837 98 57 0 207 304 139 236 5.24e-19 85.5
MsG0380014750.01.T01 MTR_7g099260 36.283 113 65 1 208 313 238 350 1.61e-17 82.4
MsG0380014750.01.T01 MTR_4g114690 40.206 97 58 0 207 303 162 258 1.81e-17 81.6
MsG0380014750.01.T01 MTR_7g098450 36.842 114 64 2 208 313 227 340 5.17e-17 80.9
MsG0380014750.01.T01 MTR_7g098450 36.842 114 64 2 208 313 250 363 6.35e-17 80.9
MsG0380014750.01.T01 MTR_4g010250 35.577 104 67 0 206 309 123 226 1.41e-16 78.6
MsG0380014750.01.T01 MTR_5g029910 37.634 93 58 0 211 303 126 218 3.28e-15 74.7
MsG0380014750.01.T01 MTR_1g073230 27.922 154 103 1 165 310 223 376 1.52e-14 73.9
MsG0380014750.01.T01 MTR_2g103795 40.000 85 51 0 207 291 139 223 1.57e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014750.01.T01 AT1G07280 59.459 333 121 3 1 320 217 548 2.70e-134 393
MsG0380014750.01.T01 AT1G07280 59.459 333 121 3 1 320 217 548 2.70e-134 393
MsG0380014750.01.T01 AT1G07280 59.459 333 121 3 1 320 217 548 2.70e-134 393
MsG0380014750.01.T01 AT2G29670 58.944 341 119 6 1 320 193 533 1.06e-125 370
MsG0380014750.01.T01 AT2G29670 58.944 341 119 6 1 320 193 533 1.06e-125 370
MsG0380014750.01.T01 AT3G47080 50.774 323 123 7 1 321 226 514 1.27e-100 305
MsG0380014750.01.T01 AT1G07280 55.469 256 100 3 1 243 217 471 3.69e-84 262
MsG0380014750.01.T01 AT4G17940 39.785 93 56 0 211 303 154 246 4.26e-17 80.1
MsG0380014750.01.T01 AT5G20190 38.776 98 60 0 207 304 156 253 4.28e-17 80.5
MsG0380014750.01.T01 AT1G80130 35.052 97 63 0 207 303 165 261 2.05e-11 64.3
MsG0380014750.01.T01 AT4G32340 35.789 95 60 1 211 304 114 208 2.57e-11 63.2

Find 103 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGAATTTGTTTCGTGATT+TGG 0.185372 3:+59368099 None:intergenic
AACTAAAACAAGATCAAAAT+TGG 0.191920 3:-59365405 MsG0380014750.01.T01:three_prime_UTR
TTCACATACACCAACGTTAA+TGG 0.200607 3:-59367475 MsG0380014750.01.T01:CDS
AAACAATGCAATTATGGATT+TGG 0.264253 3:-59367867 MsG0380014750.01.T01:five_prime_UTR
TAACGAAAACAATGCAATTA+TGG 0.267841 3:-59367873 MsG0380014750.01.T01:five_prime_UTR
TCTTCAGAGGTCTCGATCTT+TGG 0.284883 3:-59368032 MsG0380014750.01.T01:five_prime_UTR
TCTTGTTCTTCCGGTTCTTC+TGG 0.286031 3:-59367815 MsG0380014750.01.T01:five_prime_UTR
ATAAATACGCAACCTTCTTA+TGG 0.292547 3:-59365610 MsG0380014750.01.T01:CDS
TCTTCTTCCTCTTCTTGTAT+TGG 0.302233 3:+59367994 None:intergenic
GGCCGCAGAAGAGACTTATT+TGG 0.312086 3:-59365567 MsG0380014750.01.T01:CDS
ACTTCCTCTTCTTGTTCTTC+CGG 0.317190 3:-59367824 MsG0380014750.01.T01:five_prime_UTR
ACAGAACTTGTTTATCAAAC+AGG 0.327067 3:-59366997 MsG0380014750.01.T01:CDS
AGCATAATTTGCAGCATAAT+AGG 0.327559 3:+59365517 None:intergenic
AAGAAGAAGAAACTAAGATA+TGG 0.341917 3:-59367140 MsG0380014750.01.T01:CDS
AACTAAGATATGGGAATCTA+TGG 0.346469 3:-59367130 MsG0380014750.01.T01:CDS
TTATTATAAGCTTCAGCATC+TGG 0.373541 3:+59365629 None:intergenic
TTTCCAATGGGGATGGGTTG+AGG 0.377728 3:-59365294 MsG0380014750.01.T01:three_prime_UTR
GCAAGTAACAAAGCATTGTT+TGG 0.387537 3:+59366961 None:intergenic
AGTAATACTGCCTCGGTTGA+TGG 0.395286 3:-59367276 MsG0380014750.01.T01:CDS
CGTTGTTACTTGACATAGAA+TGG 0.397116 3:+59367418 None:intergenic
TCTTCCTCTTCTTGTATTGG+TGG 0.400469 3:+59367997 None:intergenic
TTGTTTCGTGATTTGGATGA+TGG 0.417401 3:+59368106 None:intergenic
CTCCGGTGGCTCAAAATTAA+CGG 0.427707 3:+59367784 None:intergenic
CTTCTTGTATTGGTGGAAAG+TGG 0.431042 3:+59368004 None:intergenic
TTTGACGGGGATGGACGAAC+GGG 0.434895 3:-59367210 MsG0380014750.01.T01:CDS
AATGAAACAATTTGTTTCAC+CGG 0.442034 3:-59367064 MsG0380014750.01.T01:CDS
AAATATAAACCGGTGGGGAG+TGG 0.442813 3:-59367234 MsG0380014750.01.T01:CDS
AGACCTCTGAAGAACAAAAC+TGG 0.448851 3:+59368042 None:intergenic
GGCATGAGAACCAGAAGAAC+CGG 0.459143 3:+59367805 None:intergenic
TTCTTGTATTGGTGGAAAGT+GGG 0.467059 3:+59368005 None:intergenic
GATTCTTGAAAGAGTGCAAA+AGG 0.467494 3:-59367538 MsG0380014750.01.T01:CDS
TTTAAAGAAACTTACTCAAA+CGG 0.471650 3:+59368583 None:intergenic
GAGGAAGAAGAACAATAAGA+AGG 0.486358 3:-59367982 MsG0380014750.01.T01:five_prime_UTR
GATTCAATCTTAGCAGAAAC+CGG 0.488724 3:+59367045 None:intergenic
ACTAAAACAAGATCAAAATT+GGG 0.489177 3:-59365404 MsG0380014750.01.T01:three_prime_UTR
TTTATGATTCTCAATGAAAA+CGG 0.489931 3:+59367716 None:intergenic
GAAGAAGAATTCAGAGATGT+TGG 0.491273 3:-59367678 MsG0380014750.01.T01:five_prime_UTR
TCCTCCGTCGTCAAACTCAC+CGG 0.496712 3:-59368656 MsG0380014750.01.T01:five_prime_UTR
GCCTCGGTTGATGGAGGAAG+TGG 0.496999 3:-59367267 MsG0380014750.01.T01:CDS
GGGAGTGGATTTGACGGGGA+TGG 0.504157 3:-59367219 MsG0380014750.01.T01:CDS
AGAAGAAGAAACTAAGATAT+GGG 0.504906 3:-59367139 MsG0380014750.01.T01:CDS
ATTTGACGGGGATGGACGAA+CGG 0.508427 3:-59367211 MsG0380014750.01.T01:CDS
TCTTGAGAAGAATCAGATAG+AGG 0.509178 3:+59365455 None:intergenic
TTATAGAAACGAAGAGGGAT+TGG 0.510770 3:-59367097 MsG0380014750.01.T01:CDS
CGCAGAAGAGACTTATTTGG+AGG 0.512178 3:-59365564 MsG0380014750.01.T01:CDS
GCAGCATAATAGGTGTTGCT+AGG 0.514052 3:+59365527 None:intergenic
TTTAGCTGCGGTTGCAACCC+CGG 0.514830 3:-59367394 MsG0380014750.01.T01:CDS
TCGTTGCACATGAATTTGAC+AGG 0.520886 3:-59366915 MsG0380014750.01.T01:intron
CCGGTGGGGAGTGGATTTGA+CGG 0.530493 3:-59367225 MsG0380014750.01.T01:CDS
AGTATTACTTCCACTCGAAA+CGG 0.537786 3:+59367290 None:intergenic
CGGCGGCGGAGAGATTATTC+CGG 0.541801 3:+59368637 None:intergenic
TCACCTCAACCCATCCCCAT+TGG 0.542243 3:+59365291 None:intergenic
ATTGGGAGGGAAATATATAG+AGG 0.549680 3:-59365387 MsG0380014750.01.T01:three_prime_UTR
CAGAACTTGTTTATCAAACA+GGG 0.550923 3:-59366996 MsG0380014750.01.T01:CDS
CCGCGGTGGGAAATATAAAC+CGG 0.553139 3:-59367244 MsG0380014750.01.T01:CDS
GAAACTTACTCAAACGGTGG+TGG 0.555885 3:+59368589 None:intergenic
GATGGAGGAAGTGGCCGCGG+TGG 0.560003 3:-59367258 MsG0380014750.01.T01:CDS
CAAATCACGAAACAAATTCG+TGG 0.561853 3:-59368098 MsG0380014750.01.T01:five_prime_UTR
CTTTCCACCAATACAAGAAG+AGG 0.562841 3:-59368001 MsG0380014750.01.T01:five_prime_UTR
ATGGAGGAAGTGGCCGCGGT+GGG 0.564800 3:-59367257 MsG0380014750.01.T01:CDS
ATGGGAATCTATGGTTGAAG+AGG 0.565563 3:-59367121 MsG0380014750.01.T01:CDS
CTTCAAGAGAGCTATAGAAG+TGG 0.567749 3:-59365657 MsG0380014750.01.T01:CDS
AGGAAGAAGAACAATAAGAA+GGG 0.569239 3:-59367981 MsG0380014750.01.T01:five_prime_UTR
GTTGATGGAGGAAGTGGCCG+CGG 0.570618 3:-59367261 MsG0380014750.01.T01:CDS
CGATCGAAGAAGTCTCCACC+GGG 0.571840 3:+59367376 None:intergenic
AGAACCGGAAGAACAAGAAG+AGG 0.572363 3:+59367820 None:intergenic
GAGTGGAAGTAATACTGCCT+CGG 0.577752 3:-59367283 MsG0380014750.01.T01:CDS
TCCGGTGAGTTTGACGACGG+AGG 0.580178 3:+59368655 None:intergenic
CGGTGGGGAGTGGATTTGAC+GGG 0.580234 3:-59367224 MsG0380014750.01.T01:CDS
TTATAAGCTTCAGCATCTGG+TGG 0.586028 3:+59365632 None:intergenic
TTTCACTTTACAAATGAGAG+AGG 0.591681 3:-59367586 MsG0380014750.01.T01:CDS
CCGTCAAATCCACTCCCCAC+CGG 0.599440 3:+59367225 None:intergenic
ACGATCGAAGAAGTCTCCAC+CGG 0.601465 3:+59367375 None:intergenic
GGTGGATCGAAACAAATTCG+TGG 0.602746 3:+59368063 None:intergenic
AAAGAAACTTACTCAAACGG+TGG 0.605610 3:+59368586 None:intergenic
AAATCACGAAACAAATTCGT+GGG 0.608197 3:-59368097 MsG0380014750.01.T01:five_prime_UTR
AAAACAAGATCAAAATTGGG+AGG 0.613359 3:-59365401 MsG0380014750.01.T01:three_prime_UTR
AAAACATTCTCCGTTTCGAG+TGG 0.617119 3:-59367300 MsG0380014750.01.T01:CDS
GAGGCTTATAGAAACGAAGA+GGG 0.619193 3:-59367102 MsG0380014750.01.T01:CDS
TCTATGGAATACTGGTGGAG+AGG 0.619309 3:-59365489 MsG0380014750.01.T01:CDS
GCTAGTGTTTGTGATGAAGA+TGG 0.620714 3:+59368145 None:intergenic
GTGGATCGAAACAAATTCGT+GGG 0.620906 3:+59368064 None:intergenic
CGGTGGGAAATATAAACCGG+TGG 0.621319 3:-59367241 MsG0380014750.01.T01:CDS
AAACAAGATCAAAATTGGGA+GGG 0.624576 3:-59365400 MsG0380014750.01.T01:three_prime_UTR
GGTGGGAAATATAAACCGGT+GGG 0.628312 3:-59367240 MsG0380014750.01.T01:CDS
ATTATCGCTGGTATAAACTC+CGG 0.629792 3:+59367767 None:intergenic
AGAGGCTTATAGAAACGAAG+AGG 0.630772 3:-59367103 MsG0380014750.01.T01:CDS
ATCGCTGGTATAAACTCCGG+TGG 0.635655 3:+59367770 None:intergenic
CCTCTGAAGAACAAAACTGG+TGG 0.635757 3:+59368045 None:intergenic
AAGTAACAACGCTTTAGCTG+CGG 0.636246 3:-59367406 MsG0380014750.01.T01:CDS
AATACTGCCTCGGTTGATGG+AGG 0.639281 3:-59367273 MsG0380014750.01.T01:CDS
GCCACTTCCTCCATCAACCG+AGG 0.643564 3:+59367266 None:intergenic
AGCTGCGGTTGCAACCCCGG+TGG 0.647798 3:-59367391 MsG0380014750.01.T01:CDS
GTGATGTAATATCACGGCGG+CGG 0.648856 3:+59368623 None:intergenic
ATAACATAAACCATTAACGT+TGG 0.667251 3:+59367465 None:intergenic
TGAACGAAAAGCGAACAGCG+TGG 0.685411 3:-59367744 MsG0380014750.01.T01:five_prime_UTR
CTCCAAATAAGTCTCTTCTG+CGG 0.688717 3:+59365565 None:intergenic
TATTCCGGTGAGTTTGACGA+CGG 0.700296 3:+59368652 None:intergenic
CCGGTTTATATTTCCCACCG+CGG 0.731142 3:+59367244 None:intergenic
GTGGGAAATATAAACCGGTG+GGG 0.746911 3:-59367239 MsG0380014750.01.T01:CDS
GGTGGGGAGTGGATTTGACG+GGG 0.753129 3:-59367223 MsG0380014750.01.T01:CDS
TTGGTGATGTAATATCACGG+CGG 0.808487 3:+59368620 None:intergenic
GATCGAAGAAGTCTCCACCG+GGG 0.831475 3:+59367377 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTTTTTTCCAAT+GGG - Chr3:59368535-59368554 MsG0380014750.01.T01:intron 10.0%
!!! TTTAAATTTTTTTTTTCCAA+TGG - Chr3:59368534-59368553 MsG0380014750.01.T01:intron 10.0%
!! TGAAAAAGAAAAAACATTAT+GGG - Chr3:59365630-59365649 MsG0380014750.01.T01:CDS 15.0%
!! TTGAAAAAGAAAAAACATTA+TGG - Chr3:59365629-59365648 MsG0380014750.01.T01:CDS 15.0%
!!! ATGAAACTTTTTTTACAAAT+TGG + Chr3:59365564-59365583 None:intergenic 15.0%
!!! TAAATTTTTTTTTTCCAATG+GGG - Chr3:59368536-59368555 MsG0380014750.01.T01:intron 15.0%
!!! TGTTTTTTCTTTTTCAATTA+AGG + Chr3:59365626-59365645 None:intergenic 15.0%
!!! TTATTTATTTTTGTTTTTGC+AGG - Chr3:59365486-59365505 MsG0380014750.01.T01:CDS 15.0%
!!! TTTTTACAAATTGGAAAAAT+TGG + Chr3:59365555-59365574 None:intergenic 15.0%
!!! TTTTTCTCTTATAATAGTAT+TGG + Chr3:59367383-59367402 None:intergenic 15.0%
!!! TTTTTTCCTTATAATAGTAT+TGG + Chr3:59367416-59367435 None:intergenic 15.0%
!! AAATCACCAATACTATTATA+AGG - Chr3:59367407-59367426 MsG0380014750.01.T01:CDS 20.0%
!! AACTAAAACAAGATCAAAAT+TGG - Chr3:59368436-59368455 MsG0380014750.01.T01:intron 20.0%
!! AATTGAAAAATAGATGCTAT+TGG - Chr3:59367251-59367270 MsG0380014750.01.T01:CDS 20.0%
!! ACTAAAACAAGATCAAAATT+GGG - Chr3:59368437-59368456 MsG0380014750.01.T01:intron 20.0%
!! AGCATACTATTGAAATATAT+AGG - Chr3:59367208-59367227 MsG0380014750.01.T01:CDS 20.0%
!! ATGAATGAATTAACTTTACA+TGG - Chr3:59367576-59367595 MsG0380014750.01.T01:CDS 20.0%
!! ATTGAAAAATAGATGCTATT+GGG - Chr3:59367252-59367271 MsG0380014750.01.T01:CDS 20.0%
!! TAAAAATTGAAAAGATGCTA+TGG + Chr3:59366962-59366981 None:intergenic 20.0%
!! TTTAAAGAAACTTACTCAAA+CGG + Chr3:59365261-59365280 None:intergenic 20.0%
!! TTTACAAAAGCCATAAAATT+CGG + Chr3:59365409-59365428 None:intergenic 20.0%
!! TTTATGATTCTCAATGAAAA+CGG + Chr3:59366128-59366147 None:intergenic 20.0%
!!! AGATTTATTATGCTATTTTG+AGG - Chr3:59367795-59367814 MsG0380014750.01.T01:five_prime_UTR 20.0%
!!! AGTGAATCTTTTTGATTTTA+TGG - Chr3:59368648-59368667 MsG0380014750.01.T01:five_prime_UTR 20.0%
!!! AGTTGTATAATTGACAATTT+TGG - Chr3:59368128-59368147 MsG0380014750.01.T01:five_prime_UTR 20.0%
!!! ATCTGATTTTATTCCATAAT+TGG + Chr3:59367779-59367798 None:intergenic 20.0%
!!! CTTGTTTTAGTTGATTATTA+TGG + Chr3:59368428-59368447 None:intergenic 20.0%
!!! TTTTGTATGAAGATTTACAA+GGG - Chr3:59366281-59366300 MsG0380014750.01.T01:intron 20.0%
!!! TTTTTTCCTTCTTCTATTTT+TGG + Chr3:59367830-59367849 None:intergenic 20.0%
! AAACAATGCAATTATGGATT+TGG - Chr3:59365974-59365993 MsG0380014750.01.T01:intron 25.0%
! AAGAAGAAGAAACTAAGATA+TGG - Chr3:59366701-59366720 MsG0380014750.01.T01:intron 25.0%
! AGAAGAAGAAACTAAGATAT+GGG - Chr3:59366702-59366721 MsG0380014750.01.T01:intron 25.0%
! ATAACATAAACCATTAACGT+TGG + Chr3:59366379-59366398 None:intergenic 25.0%
! ATCTAACCAAAAATAGAAGA+AGG - Chr3:59367821-59367840 MsG0380014750.01.T01:five_prime_UTR 25.0%
! TAAACACACTTTAATTCTCT+TGG - Chr3:59365352-59365371 MsG0380014750.01.T01:three_prime_UTR 25.0%
! TAACGAAAACAATGCAATTA+TGG - Chr3:59365968-59365987 MsG0380014750.01.T01:intron 25.0%
! TCTTGATGAATATTGAAAGA+GGG - Chr3:59367866-59367885 MsG0380014750.01.T01:five_prime_UTR 25.0%
! TGTTGTTATAATCCTATTGT+TGG - Chr3:59367181-59367200 MsG0380014750.01.T01:CDS 25.0%
!! AATGAAACAATTTGTTTCAC+CGG - Chr3:59366777-59366796 MsG0380014750.01.T01:intron 25.0%
!! AATGGTGGTGTTTATAAAAA+CGG - Chr3:59366661-59366680 MsG0380014750.01.T01:intron 25.0%
!! ATTTTTCACTTTCCATAAGA+AGG + Chr3:59368246-59368265 None:intergenic 25.0%
!! CAAATTATGCTCATTTTCTA+TGG - Chr3:59368336-59368355 MsG0380014750.01.T01:five_prime_UTR 25.0%
!! CTCTTATAATAGTATTGGAA+GGG + Chr3:59367378-59367397 None:intergenic 25.0%
!! CTTTTGTATGAAGATTTACA+AGG - Chr3:59366280-59366299 MsG0380014750.01.T01:intron 25.0%
!! GAAAGTGAAAAATGATTTGT+GGG - Chr3:59368253-59368272 MsG0380014750.01.T01:five_prime_UTR 25.0%
!! TCTCTTATAATAGTATTGGA+AGG + Chr3:59367379-59367398 None:intergenic 25.0%
!! TGTATGCTTTTGAATATTCA+GGG - Chr3:59368151-59368170 MsG0380014750.01.T01:five_prime_UTR 25.0%
!! TTTGTGGTTTTTGTTCAAAA+GGG - Chr3:59365524-59365543 MsG0380014750.01.T01:CDS 25.0%
!! TTTTGTGGTTTTTGTTCAAA+AGG - Chr3:59365523-59365542 MsG0380014750.01.T01:CDS 25.0%
!!! AATTTGCATTGGAGATTTTT+TGG - Chr3:59367742-59367761 MsG0380014750.01.T01:five_prime_UTR 25.0%
!!! TAGTTTGTATTTTAAGCTAC+CGG - Chr3:59367701-59367720 MsG0380014750.01.T01:five_prime_UTR 25.0%
!!! TTTTGTTTTTGCAGGTTAAA+AGG - Chr3:59365494-59365513 MsG0380014750.01.T01:CDS 25.0%
!!! TTTTTGGTGATGTAATATCA+CGG + Chr3:59365227-59365246 None:intergenic 25.0%
AAAAAACATTATGGGACTTG+AGG - Chr3:59365638-59365657 MsG0380014750.01.T01:CDS 30.0%
AAAACAAGATCAAAATTGGG+AGG - Chr3:59368440-59368459 MsG0380014750.01.T01:intron 30.0%
AAACAAGATCAAAATTGGGA+GGG - Chr3:59368441-59368460 MsG0380014750.01.T01:intron 30.0%
AAATCACGAAACAAATTCGT+GGG - Chr3:59365744-59365763 MsG0380014750.01.T01:intron 30.0%
AACTAAGATATGGGAATCTA+TGG - Chr3:59366711-59366730 MsG0380014750.01.T01:intron 30.0%
AGGAAGAAGAACAATAAGAA+GGG - Chr3:59365860-59365879 MsG0380014750.01.T01:intron 30.0%
ATAAATACGCAACCTTCTTA+TGG - Chr3:59368231-59368250 MsG0380014750.01.T01:five_prime_UTR 30.0%
ATCTAGTCAATCTTATAGAC+CGG + Chr3:59367493-59367512 None:intergenic 30.0%
ATGCACTAAACAATTTGCAT+TGG - Chr3:59367731-59367750 MsG0380014750.01.T01:five_prime_UTR 30.0%
CTTATGAAAAATCATGTGCT+TGG + Chr3:59368029-59368048 None:intergenic 30.0%
CTTGATGAATATTGAAAGAG+GGG - Chr3:59367867-59367886 MsG0380014750.01.T01:five_prime_UTR 30.0%
GATTGAAGAAGAAAAATCTG+AGG + Chr3:59365595-59365614 None:intergenic 30.0%
GGAAAGTGAAAAATGATTTG+TGG - Chr3:59368252-59368271 MsG0380014750.01.T01:five_prime_UTR 30.0%
GTCTTGATGAATATTGAAAG+AGG - Chr3:59367865-59367884 MsG0380014750.01.T01:five_prime_UTR 30.0%
GTTATAATCCTATTGTTGGT+TGG - Chr3:59367185-59367204 MsG0380014750.01.T01:CDS 30.0%
TAGATTCATACTGATGTATC+CGG - Chr3:59367471-59367490 MsG0380014750.01.T01:CDS 30.0%
TTATTATAAGCTTCAGCATC+TGG + Chr3:59368215-59368234 None:intergenic 30.0%
TTTCACTTTACAAATGAGAG+AGG - Chr3:59366255-59366274 MsG0380014750.01.T01:intron 30.0%
! ACAGAACTTGTTTATCAAAC+AGG - Chr3:59366844-59366863 MsG0380014750.01.T01:intron 30.0%
! AGCATAATTTGCAGCATAAT+AGG + Chr3:59368327-59368346 None:intergenic 30.0%
! ATGGTGGTGTTTATAAAAAC+GGG - Chr3:59366662-59366681 MsG0380014750.01.T01:intron 30.0%
! CAAGCACATGATTTTTCATA+AGG - Chr3:59368027-59368046 MsG0380014750.01.T01:five_prime_UTR 30.0%
! CAGAACTTGTTTATCAAACA+GGG - Chr3:59366845-59366864 MsG0380014750.01.T01:intron 30.0%
! CATTGTTTTCGTTAGAGATT+TGG + Chr3:59365962-59365981 None:intergenic 30.0%
! GGAGTTAAGTTTTCCAATTA+TGG - Chr3:59367763-59367782 MsG0380014750.01.T01:five_prime_UTR 30.0%
! GTGTATGCTTTTGAATATTC+AGG - Chr3:59368150-59368169 MsG0380014750.01.T01:five_prime_UTR 30.0%
! GTTAAAAGGAAGACTTTTTG+TGG - Chr3:59365508-59365527 MsG0380014750.01.T01:CDS 30.0%
! GTTATACGATCCGAATTTTA+TGG - Chr3:59365396-59365415 MsG0380014750.01.T01:three_prime_UTR 30.0%
! TTCATTTTACCTCCCAATTT+TGG - Chr3:59367020-59367039 MsG0380014750.01.T01:CDS 30.0%
!! GAAGAAAGCTTTTTCTTCTA+TGG - Chr3:59366207-59366226 MsG0380014750.01.T01:intron 30.0%
!!! ATATTTTCTTTTGAGACACG+AGG + Chr3:59367968-59367987 None:intergenic 30.0%
!!! TATTTTCTTTTGAGACACGA+GGG + Chr3:59367967-59367986 None:intergenic 30.0%
!!! TTTTTTTTTCCAATGGGGAT+GGG - Chr3:59368541-59368560 MsG0380014750.01.T01:intron 30.0%
!!! TTTTTTTTTTCCAATGGGGA+TGG - Chr3:59368540-59368559 MsG0380014750.01.T01:intron 30.0%
AAAGAAACTTACTCAAACGG+TGG + Chr3:59365258-59365277 None:intergenic 35.0%
AATATTGAAAGAGGGGTTTG+CGG - Chr3:59367874-59367893 MsG0380014750.01.T01:five_prime_UTR 35.0%
ACCAATGAAGCTACCAAAAT+TGG + Chr3:59367036-59367055 None:intergenic 35.0%
AGTATTACTTCCACTCGAAA+CGG + Chr3:59366554-59366573 None:intergenic 35.0%
ATTATCGCTGGTATAAACTC+CGG + Chr3:59366077-59366096 None:intergenic 35.0%
ATTGGGAGGGAAATATATAG+AGG - Chr3:59368454-59368473 MsG0380014750.01.T01:intron 35.0%
CAAATCACGAAACAAATTCG+TGG - Chr3:59365743-59365762 MsG0380014750.01.T01:intron 35.0%
CCAATGAAGCTACCAAAATT+GGG + Chr3:59367035-59367054 None:intergenic 35.0%
GAAGAAGAATTCAGAGATGT+TGG - Chr3:59366163-59366182 MsG0380014750.01.T01:intron 35.0%
GAGGAAGAAGAACAATAAGA+AGG - Chr3:59365859-59365878 MsG0380014750.01.T01:intron 35.0%
GATTCAATCTTAGCAGAAAC+CGG + Chr3:59366799-59366818 None:intergenic 35.0%
TCTTCTTCCTCTTCTTGTAT+TGG + Chr3:59365850-59365869 None:intergenic 35.0%
TCTTGAGAAGAATCAGATAG+AGG + Chr3:59368389-59368408 None:intergenic 35.0%
TGTTTAGTGCATCTAGAAAC+CGG + Chr3:59367723-59367742 None:intergenic 35.0%
TTATAAAAACGGGGAAACTG+AGG - Chr3:59366672-59366691 MsG0380014750.01.T01:intron 35.0%
TTATAGAAACGAAGAGGGAT+TGG - Chr3:59366744-59366763 MsG0380014750.01.T01:intron 35.0%
TTCACATACACCAACGTTAA+TGG - Chr3:59366366-59366385 MsG0380014750.01.T01:intron 35.0%
! AAATGCACGCTTCTTTTGTT+TGG - Chr3:59366326-59366345 MsG0380014750.01.T01:intron 35.0%
! CACGAATTTGTTTCGTGATT+TGG + Chr3:59365745-59365764 None:intergenic 35.0%
! CATTTTCTATGGAATACTGG+TGG - Chr3:59368347-59368366 MsG0380014750.01.T01:intron 35.0%
! CGTTGTTACTTGACATAGAA+TGG + Chr3:59366426-59366445 None:intergenic 35.0%
! GATTCTTGAAAGAGTGCAAA+AGG - Chr3:59366303-59366322 MsG0380014750.01.T01:intron 35.0%
! GCTCATTTTCTATGGAATAC+TGG - Chr3:59368344-59368363 MsG0380014750.01.T01:intron 35.0%
! TGGTGGTGTTTATAAAAACG+GGG - Chr3:59366663-59366682 MsG0380014750.01.T01:intron 35.0%
! TTCTTGTATTGGTGGAAAGT+GGG + Chr3:59365839-59365858 None:intergenic 35.0%
! TTGTTTCGTGATTTGGATGA+TGG + Chr3:59365738-59365757 None:intergenic 35.0%
!! GCAAGTAACAAAGCATTGTT+TGG + Chr3:59366883-59366902 None:intergenic 35.0%
AAAACATTCTCCGTTTCGAG+TGG - Chr3:59366541-59366560 MsG0380014750.01.T01:intron 40.0%
AAGTAACAACGCTTTAGCTG+CGG - Chr3:59366435-59366454 MsG0380014750.01.T01:intron 40.0%
ACTTCCTCTTCTTGTTCTTC+CGG - Chr3:59366017-59366036 MsG0380014750.01.T01:intron 40.0%
AGAGGCTTATAGAAACGAAG+AGG - Chr3:59366738-59366757 MsG0380014750.01.T01:intron 40.0%
AGTATGCTCCAACCAACAAT+AGG + Chr3:59367196-59367215 None:intergenic 40.0%
ATGAAGCTACCAAAATTGGG+AGG + Chr3:59367032-59367051 None:intergenic 40.0%
ATGGGAATCTATGGTTGAAG+AGG - Chr3:59366720-59366739 MsG0380014750.01.T01:intron 40.0%
CTCCAAATAAGTCTCTTCTG+CGG + Chr3:59368279-59368298 None:intergenic 40.0%
CTTCAAGAGAGCTATAGAAG+TGG - Chr3:59368184-59368203 MsG0380014750.01.T01:five_prime_UTR 40.0%
CTTTCCACCAATACAAGAAG+AGG - Chr3:59365840-59365859 MsG0380014750.01.T01:intron 40.0%
GAGGCTTATAGAAACGAAGA+GGG - Chr3:59366739-59366758 MsG0380014750.01.T01:intron 40.0%
GCTAGTGTTTGTGATGAAGA+TGG + Chr3:59365699-59365718 None:intergenic 40.0%
GGAGGAGAAGTAAATAAGTC+TGG + Chr3:59367936-59367955 None:intergenic 40.0%
GTGGATCGAAACAAATTCGT+GGG + Chr3:59365780-59365799 None:intergenic 40.0%
TCGTTGCACATGAATTTGAC+AGG - Chr3:59366926-59366945 MsG0380014750.01.T01:CDS 40.0%
TCTTCCTCTTCTTGTATTGG+TGG + Chr3:59365847-59365866 None:intergenic 40.0%
TGTTTGTCACTCGTCTAAGA+CGG + Chr3:59365306-59365325 None:intergenic 40.0%
TTATAAGCTTCAGCATCTGG+TGG + Chr3:59368212-59368231 None:intergenic 40.0%
! AGACCTCTGAAGAACAAAAC+TGG + Chr3:59365802-59365821 None:intergenic 40.0%
! ATAAGTCTGGCTCATGAATC+AGG + Chr3:59367923-59367942 None:intergenic 40.0%
! CTTCTTGTATTGGTGGAAAG+TGG + Chr3:59365840-59365859 None:intergenic 40.0%
! GCTTTTCGTTCAATTATCGC+TGG + Chr3:59366089-59366108 None:intergenic 40.0%
!! CCCAATTTTGGTAGCTTCAT+TGG - Chr3:59367032-59367051 MsG0380014750.01.T01:CDS 40.0%
!! TTGGTGATGTAATATCACGG+CGG + Chr3:59365224-59365243 None:intergenic 40.0%
!!! AACGGTGGTGGAAATGTTTT+TGG + Chr3:59365243-59365262 None:intergenic 40.0%
AAATATAAACCGGTGGGGAG+TGG - Chr3:59366607-59366626 MsG0380014750.01.T01:intron 45.0%
AGAACCGGAAGAACAAGAAG+AGG + Chr3:59366024-59366043 None:intergenic 45.0%
AGTAATACTGCCTCGGTTGA+TGG - Chr3:59366565-59366584 MsG0380014750.01.T01:intron 45.0%
ATGTGCTTGGTACGACTGAA+AGG + Chr3:59368016-59368035 None:intergenic 45.0%
CGCAGAAGAGACTTATTTGG+AGG - Chr3:59368277-59368296 MsG0380014750.01.T01:five_prime_UTR 45.0%
CTCCGGTGGCTCAAAATTAA+CGG + Chr3:59366060-59366079 None:intergenic 45.0%
GAAACTTACTCAAACGGTGG+TGG + Chr3:59365255-59365274 None:intergenic 45.0%
GAGTGGAAGTAATACTGCCT+CGG - Chr3:59366558-59366577 MsG0380014750.01.T01:intron 45.0%
GGATCGTATAACAAAGCTCG+AGG + Chr3:59365388-59365407 None:intergenic 45.0%
GGTGGATCGAAACAAATTCG+TGG + Chr3:59365781-59365800 None:intergenic 45.0%
GGTGGGAAATATAAACCGGT+GGG - Chr3:59366601-59366620 MsG0380014750.01.T01:intron 45.0%
GTGGGAAATATAAACCGGTG+GGG - Chr3:59366602-59366621 MsG0380014750.01.T01:intron 45.0%
TAAAAACGGGGAAACTGAGG+TGG - Chr3:59366675-59366694 MsG0380014750.01.T01:intron 45.0%
TATTCCGGTGAGTTTGACGA+CGG + Chr3:59365192-59365211 None:intergenic 45.0%
TCTATGGAATACTGGTGGAG+AGG - Chr3:59368352-59368371 MsG0380014750.01.T01:intron 45.0%
TCTTCAGAGGTCTCGATCTT+TGG - Chr3:59365809-59365828 MsG0380014750.01.T01:intron 45.0%
TCTTGTTCTTCCGGTTCTTC+TGG - Chr3:59366026-59366045 MsG0380014750.01.T01:intron 45.0%
! CCTCTGAAGAACAAAACTGG+TGG + Chr3:59365799-59365818 None:intergenic 45.0%
! TGCCGTTAATTTTGAGCCAC+CGG - Chr3:59366055-59366074 MsG0380014750.01.T01:intron 45.0%
!! CGAACGGGTTTTTCTAATGG+TGG - Chr3:59366646-59366665 MsG0380014750.01.T01:intron 45.0%
!! GCAGCATAATAGGTGTTGCT+AGG + Chr3:59368317-59368336 None:intergenic 45.0%
!! GGACGAACGGGTTTTTCTAA+TGG - Chr3:59366643-59366662 MsG0380014750.01.T01:intron 45.0%
!!! CCACCAGTTTTGTTCTTCAG+AGG - Chr3:59365796-59365815 MsG0380014750.01.T01:intron 45.0%
!!! GTCTGTGTGTGAGTTTTAGG+TGG + Chr3:59365329-59365348 None:intergenic 45.0%
ACGATCGAAGAAGTCTCCAC+CGG + Chr3:59366469-59366488 None:intergenic 50.0%
ATCGCTGGTATAAACTCCGG+TGG + Chr3:59366074-59366093 None:intergenic 50.0%
ATTTGACGGGGATGGACGAA+CGG - Chr3:59366630-59366649 MsG0380014750.01.T01:intron 50.0%
CCGCGGTGGGAAATATAAAC+CGG - Chr3:59366597-59366616 MsG0380014750.01.T01:intron 50.0%
CCGGTTTATATTTCCCACCG+CGG + Chr3:59366600-59366619 None:intergenic 50.0%
CGGTGGGAAATATAAACCGG+TGG - Chr3:59366600-59366619 MsG0380014750.01.T01:intron 50.0%
GGCATGAGAACCAGAAGAAC+CGG + Chr3:59366039-59366058 None:intergenic 50.0%
GGCCGCAGAAGAGACTTATT+TGG - Chr3:59368274-59368293 MsG0380014750.01.T01:five_prime_UTR 50.0%
GGCTCATGAATCAGGTACAC+TGG + Chr3:59367915-59367934 None:intergenic 50.0%
GTGATGTAATATCACGGCGG+CGG + Chr3:59365221-59365240 None:intergenic 50.0%
TGAACGAAAAGCGAACAGCG+TGG - Chr3:59366097-59366116 MsG0380014750.01.T01:intron 50.0%
! CGCGTCTGTGTGTGAGTTTT+AGG + Chr3:59365332-59365351 None:intergenic 50.0%
!! AATACTGCCTCGGTTGATGG+AGG - Chr3:59366568-59366587 MsG0380014750.01.T01:intron 50.0%
!! TTTCCAATGGGGATGGGTTG+AGG - Chr3:59368547-59368566 MsG0380014750.01.T01:intron 50.0%
CGATCGAAGAAGTCTCCACC+GGG + Chr3:59366468-59366487 None:intergenic 55.0%
GATCGAAGAAGTCTCCACCG+GGG + Chr3:59366467-59366486 None:intergenic 55.0%
TCACCTCAACCCATCCCCAT+TGG + Chr3:59368553-59368572 None:intergenic 55.0%
TCCTCCGTCGTCAAACTCAC+CGG - Chr3:59365185-59365204 MsG0380014750.01.T01:three_prime_UTR 55.0%
TTTAGCTGCGGTTGCAACCC+CGG - Chr3:59366447-59366466 MsG0380014750.01.T01:intron 55.0%
TTTGACGGGGATGGACGAAC+GGG - Chr3:59366631-59366650 MsG0380014750.01.T01:intron 55.0%
CCGTCAAATCCACTCCCCAC+CGG + Chr3:59366619-59366638 None:intergenic 60.0%
CGGCGGCGGAGAGATTATTC+CGG + Chr3:59365207-59365226 None:intergenic 60.0%
GCCACTTCCTCCATCAACCG+AGG + Chr3:59366578-59366597 None:intergenic 60.0%
TCCGGTGAGTTTGACGACGG+AGG + Chr3:59365189-59365208 None:intergenic 60.0%
! CCGGTGGGGAGTGGATTTGA+CGG - Chr3:59366616-59366635 MsG0380014750.01.T01:intron 60.0%
! CGGTGGGGAGTGGATTTGAC+GGG - Chr3:59366617-59366636 MsG0380014750.01.T01:intron 60.0%
! GGGAGTGGATTTGACGGGGA+TGG - Chr3:59366622-59366641 MsG0380014750.01.T01:intron 60.0%
! GGTGGGGAGTGGATTTGACG+GGG - Chr3:59366618-59366637 MsG0380014750.01.T01:intron 60.0%
! GTTGATGGAGGAAGTGGCCG+CGG - Chr3:59366580-59366599 MsG0380014750.01.T01:intron 60.0%
!! GCCTCGGTTGATGGAGGAAG+TGG - Chr3:59366574-59366593 MsG0380014750.01.T01:intron 60.0%
!! TGAGACACGAGGGCATCACG+TGG + Chr3:59367957-59367976 None:intergenic 60.0%
ATGGAGGAAGTGGCCGCGGT+GGG - Chr3:59366584-59366603 MsG0380014750.01.T01:intron 65.0%
!! GACACGAGGGCATCACGTGG+AGG + Chr3:59367954-59367973 None:intergenic 65.0%
AGCTGCGGTTGCAACCCCGG+TGG - Chr3:59366450-59366469 MsG0380014750.01.T01:intron 70.0%
GATGGAGGAAGTGGCCGCGG+TGG - Chr3:59366583-59366602 MsG0380014750.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 59365156 59368707 59365156 ID=MsG0380014750.01;Name=MsG0380014750.01
Chr3 mRNA 59365156 59368707 59365156 ID=MsG0380014750.01.T01;Parent=MsG0380014750.01;Name=MsG0380014750.01.T01;_AED=0.22;_eAED=0.22;_QI=828|1|1|1|0.5|0.33|3|292|321
Chr3 exon 59365156 59365691 59365156 ID=MsG0380014750.01.T01:exon:11543;Parent=MsG0380014750.01.T01
Chr3 exon 59366916 59368355 59366916 ID=MsG0380014750.01.T01:exon:11542;Parent=MsG0380014750.01.T01
Chr3 exon 59368598 59368707 59368598 ID=MsG0380014750.01.T01:exon:11541;Parent=MsG0380014750.01.T01
Chr3 five_prime_UTR 59368598 59368707 59368598 ID=MsG0380014750.01.T01:five_prime_utr;Parent=MsG0380014750.01.T01
Chr3 five_prime_UTR 59367638 59368355 59367638 ID=MsG0380014750.01.T01:five_prime_utr;Parent=MsG0380014750.01.T01
Chr3 CDS 59366916 59367637 59366916 ID=MsG0380014750.01.T01:cds;Parent=MsG0380014750.01.T01
Chr3 CDS 59365448 59365691 59365448 ID=MsG0380014750.01.T01:cds;Parent=MsG0380014750.01.T01
Chr3 three_prime_UTR 59365156 59365447 59365156 ID=MsG0380014750.01.T01:three_prime_utr;Parent=MsG0380014750.01.T01
Gene Sequence

>MsG0380014750.01.T01

ATGGTGTTCATCATTAGAGAGCTTCAATGTTTCACTTTACAAATGAGAGAGGTTCTTTTGTATGAAGATTTACAAGGGATTCTTGAAAGAGTGCAAAAGGAAATGCACGCTTCTTTTGTTTGGTTGTTTCAACAATATTTTTCACATACACCAACGTTAATGGTTTATGTTATGATACTTCTTGCAAATTTTACAGTCCATTCTATGTCAAGTAACAACGCTTTAGCTGCGGTTGCAACCCCGGTGGAGACTTCTTCGATCGTCGAAGTTCACAATGACAATCATGTCTTTAAGAAATTTGATTCTTCTGTTATTAAAACATTCTCCGTTTCGAGTGGAAGTAATACTGCCTCGGTTGATGGAGGAAGTGGCCGCGGTGGGAAATATAAACCGGTGGGGAGTGGATTTGACGGGGATGGACGAACGGGTTTTTCTAATGGTGGTGTTTATAAAAACGGGGAAACTGAGGTGGATGAAGAAGAAGAAACTAAGATATGGGAATCTATGGTTGAAGAGGCTTATAGAAACGAAGAGGGATTGGATCATGAAGAAATGAAACAATTTGTTTCACCGGTTTCTGCTAAGATTGAATCTGATGATTATGCAGAGTATTTGAGAACAGAACTTGTTTATCAAACAGGGTTGTCTCAAGAACCAAACAATGCTTTGTTACTTGCTAACTATGCTCAGTTTCTTTACATCGTTGCACATGAATTTGACAGGGCAGAAGAATACTTCAAGAGAGCTATAGAAGTGGAGCCACCAGATGCTGAAGCTTATAATAAATACGCAACCTTCTTATGGAAAGTGAAAAATGATTTGTGGGCCGCAGAAGAGACTTATTTGGAGGCTATTTCAGCTGAACCTAGCAACACCTATTATGCTGCAAATTATGCTCATTTTCTATGGAATACTGGTGGAGAGGATACATGTTTTCCTCTATCTGATTCTTCTCAAGAAGTTTGA

Protein sequence

>MsG0380014750.01.T01

MVFIIRELQCFTLQMREVLLYEDLQGILERVQKEMHASFVWLFQQYFSHTPTLMVYVMILLANFTVHSMSSNNALAAVATPVETSSIVEVHNDNHVFKKFDSSVIKTFSVSSGSNTASVDGGSGRGGKYKPVGSGFDGDGRTGFSNGGVYKNGETEVDEEEETKIWESMVEEAYRNEEGLDHEEMKQFVSPVSAKIESDDYAEYLRTELVYQTGLSQEPNNALLLANYAQFLYIVAHEFDRAEEYFKRAIEVEPPDAEAYNKYATFLWKVKNDLWAAEETYLEAISAEPSNTYYAANYAHFLWNTGGEDTCFPLSDSSQEV*