AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025089.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025089.01.T01 MTR_5g021980 83.516 273 13 1 1 273 1 241 2.28e-165 459
MsG0580025089.01.T01 MTR_4g072210 61.345 238 60 1 36 273 32 237 2.09e-105 307
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025089.01.T01 AT5G45600 56.604 265 74 3 10 274 9 232 1.70e-104 305
MsG0580025089.01.T01 AT5G45600 56.226 265 76 3 10 274 9 233 2.14e-104 305
MsG0580025089.01.T01 AT2G18000 55.652 230 68 2 46 273 33 230 1.95e-87 261
MsG0580025089.01.T01 AT2G18000 56.853 197 51 2 46 240 33 197 2.82e-76 231

Find 88 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAAATTGGGGATTT+AGG 0.119714 5:-13723940 None:intergenic
ATTTGTGTTCCTATTGTTTA+TGG 0.155857 5:+13724221 MsG0580025089.01.T01:CDS
GGATTTAGGGTTTAGGGTTT+TGG 0.171824 5:-13723926 None:intergenic
TTGAGAAATGAAGAAGAAAT+TGG 0.193899 5:-13723949 None:intergenic
TATCACCATATAAAATATTT+TGG 0.199066 5:-13726360 None:intergenic
AAGAAGAAATTGGGGATTTA+GGG 0.234618 5:-13723939 None:intergenic
ATCTTCCCCGTAGATTGTTT+TGG 0.301941 5:+13726263 MsG0580025089.01.T01:three_prime_UTR
AAATTGGGGATTTAGGGTTT+AGG 0.308547 5:-13723933 None:intergenic
CTAGGTCTCAATCTCATAAA+TGG 0.308690 5:+13724586 MsG0580025089.01.T01:intron
CTTCCAAGTTTGACCCTAAA+GGG 0.311001 5:-13726204 None:intergenic
TGAGAAATGAAGAAGAAATT+GGG 0.319935 5:-13723948 None:intergenic
CTCTGAAGATTCCGACAAAA+AGG 0.323148 5:+13724088 MsG0580025089.01.T01:CDS
GTCAAAACAGCCATCTGATT+AGG 0.323162 5:+13726135 MsG0580025089.01.T01:three_prime_UTR
TGCGGACCAGATTCATCTTC+AGG 0.323612 5:-13724924 None:intergenic
TTTGTGTTCCTATTGTTTAT+GGG 0.329826 5:+13724222 MsG0580025089.01.T01:CDS
AATTGGGGATTTAGGGTTTA+GGG 0.342091 5:-13723932 None:intergenic
AGAAGAATAGACATGGTTCT+TGG 0.350504 5:+13726327 MsG0580025089.01.T01:three_prime_UTR
GCGAAGACAATTAACTTTGT+TGG 0.360143 5:+13726099 MsG0580025089.01.T01:three_prime_UTR
TGAGATATCTGAATGTGGTT+GGG 0.370519 5:+13724725 MsG0580025089.01.T01:CDS
TGTTGTTGTTCCTAAGCTTC+CGG 0.377160 5:+13725043 MsG0580025089.01.T01:CDS
CCTCTCCCCTTGTCATTCAT+AGG 0.378226 5:-13725203 None:intergenic
GTGATTCAACAACTCTTGTT+GGG 0.380529 5:-13724695 None:intergenic
CGTCTGCCTCTGAGAAGTTC+AGG 0.383496 5:-13725259 None:intergenic
CTGTGTAGAAGCCAGTTGTT+TGG 0.386903 5:+13726298 MsG0580025089.01.T01:three_prime_UTR
TCAAAACAGCCATCTGATTA+GGG 0.394516 5:+13726136 MsG0580025089.01.T01:three_prime_UTR
TCTTCCAAGTTTGACCCTAA+AGG 0.402244 5:-13726205 None:intergenic
GGTGATTCAACAACTCTTGT+TGG 0.404893 5:-13724696 None:intergenic
ATCTTAGCGCTGTTGTTAAG+AGG 0.408823 5:+13724640 MsG0580025089.01.T01:CDS
CTTCTAAACCTCCAAACAAC+TGG 0.411904 5:-13726309 None:intergenic
GCAATAGTCCCATAAACAAT+AGG 0.416181 5:-13724230 None:intergenic
TTAGTCCGGGGACAAGTCTC+TGG 0.416908 5:+13724391 MsG0580025089.01.T01:CDS
AGAAAAGCCTCAGAAGGTTC+AGG 0.431687 5:-13724996 None:intergenic
ACTAGCGGCCGCTCGCCAAC+AGG 0.433354 5:+13725291 MsG0580025089.01.T01:exon
TCGCAGCTCAATTTGGTCTC+CGG 0.438817 5:+13724361 MsG0580025089.01.T01:intron
GATTGTGATCAAGAGGGTTA+AGG 0.439714 5:+13724190 MsG0580025089.01.T01:intron
TGGCTTGAATTTACCAAGCC+CGG 0.441883 5:+13725067 MsG0580025089.01.T01:CDS
CCACATTCAGATATCTCAAA+AGG 0.442736 5:-13724720 None:intergenic
AATATATCCAAAACAATCTA+CGG 0.450829 5:-13726270 None:intergenic
AAAAGGAATGTACCCGGGCT+TGG 0.452777 5:-13725080 None:intergenic
ACGTTTGAGATTGAGACATT+TGG 0.453924 5:-13723980 None:intergenic
TTGTAAGATTCAATGACAAC+AGG 0.457288 5:-13724960 None:intergenic
CACATTCAGATATCTCAAAA+GGG 0.460624 5:-13724719 None:intergenic
GTGGCTCAGTGGATGATCTT+TGG 0.461147 5:-13725231 None:intergenic
CTTGTTGGGTTGTTGAAACT+AGG 0.464463 5:-13724681 None:intergenic
TTCAAGCCATCCGGAAGCTT+AGG 0.466794 5:-13725053 None:intergenic
TGTAGAAGCCAGTTGTTTGG+AGG 0.475320 5:+13726301 MsG0580025089.01.T01:three_prime_UTR
TTGTATCCTGAAGATGAATC+TGG 0.476586 5:+13724918 MsG0580025089.01.T01:CDS
TTGAGATATCTGAATGTGGT+TGG 0.489346 5:+13724724 MsG0580025089.01.T01:CDS
ATATATCCAAAACAATCTAC+GGG 0.499169 5:-13726269 None:intergenic
GAGATATCTGAATGTGGTTG+GGG 0.508033 5:+13724726 MsG0580025089.01.T01:CDS
TCATCTTGCTGTCTCTTGAG+TGG 0.510191 5:-13724005 None:intergenic
TTTCCCTTTAGGGTCAAACT+TGG 0.511163 5:+13726201 MsG0580025089.01.T01:three_prime_UTR
GAGAAATGAAGAAGAAATTG+GGG 0.514160 5:-13723947 None:intergenic
AGACAATTAACTTTGTTGGA+AGG 0.518481 5:+13726103 MsG0580025089.01.T01:three_prime_UTR
CTTGGTAAATTCAAGCCATC+CGG 0.524197 5:-13725062 None:intergenic
AAGATCATCCACTGAGCCAC+TGG 0.526941 5:+13725234 MsG0580025089.01.T01:CDS
ATTATGAAAATGTCAAGGAC+TGG 0.533378 5:+13724445 MsG0580025089.01.T01:CDS
AGCTTAGGAACAACAACAGC+AGG 0.539488 5:-13725038 None:intergenic
TCTTAGCGCTGTTGTTAAGA+GGG 0.547459 5:+13724641 MsG0580025089.01.T01:CDS
CCTATGAATGACAAGGGGAG+AGG 0.556014 5:+13725203 MsG0580025089.01.T01:CDS
TGTGCGTGGAGCTTCTAATG+AGG 0.563078 5:+13724617 MsG0580025089.01.T01:CDS
TTGTCATTCATAGGTTCGAC+CGG 0.563658 5:-13725194 None:intergenic
GGCTTGAATTTACCAAGCCC+GGG 0.565243 5:+13725068 MsG0580025089.01.T01:CDS
CATGTACATCCCTAATCAGA+TGG 0.565284 5:-13726145 None:intergenic
TGGTTCAGATTGTGATCAAG+AGG 0.565288 5:+13724183 MsG0580025089.01.T01:intron
ACAGGTTTCTTTGTATTCTG+CGG 0.567258 5:-13724942 None:intergenic
GTTGTTCCTAAGCTTCCGGA+TGG 0.569025 5:+13725047 MsG0580025089.01.T01:CDS
TCTCGATTATGAAAATGTCA+AGG 0.595851 5:+13724440 MsG0580025089.01.T01:CDS
ACGAGTAGGTTTGATAGCAG+AGG 0.604802 5:-13724048 None:intergenic
AAATGGACTGTTTATGTGCG+TGG 0.607530 5:+13724603 MsG0580025089.01.T01:CDS
TTCAGGAACCAGTGGCTCAG+TGG 0.609060 5:-13725242 None:intergenic
GGTTCAGATTGTGATCAAGA+GGG 0.613238 5:+13724184 MsG0580025089.01.T01:intron
GCAGAGGAATCATCATCAGT+GGG 0.613682 5:-13724032 None:intergenic
CTGAGAAGTTCAGGAACCAG+TGG 0.616400 5:-13725250 None:intergenic
AGCAGAGGAATCATCATCAG+TGG 0.616651 5:-13724033 None:intergenic
ATGCAGAACCTGTTGGCGAG+CGG 0.618917 5:-13725299 None:intergenic
CGTGCGAGAAAAGCCTCAGA+AGG 0.629363 5:-13725002 None:intergenic
GGTCGAACCTATGAATGACA+AGG 0.642634 5:+13725196 MsG0580025089.01.T01:CDS
GTCGAACCTATGAATGACAA+GGG 0.645605 5:+13725197 MsG0580025089.01.T01:CDS
ACATTCAGATATCTCAAAAG+GGG 0.650798 5:-13724718 None:intergenic
ATGAGCCAGAGACTTGTCCC+CGG 0.666373 5:-13724396 None:intergenic
GAGGTTTAGAAGAATAGACA+TGG 0.671266 5:+13726320 MsG0580025089.01.T01:three_prime_UTR
TGTCATTGAATCTTACAATG+AGG 0.676551 5:+13724965 MsG0580025089.01.T01:CDS
CTGGTTCCTGAACTTCTCAG+AGG 0.682622 5:+13725253 MsG0580025089.01.T01:CDS
CATTCAGATATCTCAAAAGG+GGG 0.698972 5:-13724717 None:intergenic
TCGAACCTATGAATGACAAG+GGG 0.714166 5:+13725198 MsG0580025089.01.T01:CDS
CAGACGAGCTCTTAAACTAG+CGG 0.743965 5:+13725276 MsG0580025089.01.T01:CDS
TATATCCAAAACAATCTACG+GGG 0.771191 5:-13726268 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATACAATCAATTTT+AGG + Chr5:13725469-13725488 MsG0580025089.01.T01:intron 10.0%
!!! AATAAATACAATCAATTTTA+GGG + Chr5:13725470-13725489 MsG0580025089.01.T01:intron 10.0%
!!! ATATCTTAATAGATATTTTT+TGG + Chr5:13726174-13726193 MsG0580025089.01.T01:three_prime_UTR 10.0%
!!! TTTAATAAAGATTGTATTTT+TGG + Chr5:13724163-13724182 MsG0580025089.01.T01:intron 10.0%
!!! TTTTATTATTCTTCATTATT+TGG + Chr5:13724138-13724157 MsG0580025089.01.T01:intron 10.0%
!! ACAAATACAAAAAACAAAAA+AGG - Chr5:13725753-13725772 None:intergenic 15.0%
!! AGTATTATTGGAAATTAAAT+TGG + Chr5:13724472-13724491 MsG0580025089.01.T01:intron 15.0%
!! GTATTATTGGAAATTAAATT+GGG + Chr5:13724473-13724492 MsG0580025089.01.T01:intron 15.0%
!!! CATATAATAATGTTACTTTA+AGG - Chr5:13725426-13725445 None:intergenic 15.0%
!!! TATCACCATATAAAATATTT+TGG - Chr5:13726363-13726382 None:intergenic 15.0%
!!! TTATGCCAAAATATTTTATA+TGG + Chr5:13726355-13726374 MsG0580025089.01.T01:three_prime_UTR 15.0%
!! AAAAAAGTGAAAACAGAATT+AGG - Chr5:13724121-13724140 None:intergenic 20.0%
!! AAAAACAAACTAATCCATTA+AGG - Chr5:13725824-13725843 None:intergenic 20.0%
!! AAAAAGTGAAAACAGAATTA+GGG - Chr5:13724120-13724139 None:intergenic 20.0%
!! AACATTATTATATGCAGTTA+TGG + Chr5:13725432-13725451 MsG0580025089.01.T01:intron 20.0%
!! AATATATCCAAAACAATCTA+CGG - Chr5:13726273-13726292 None:intergenic 20.0%
!! ACATTATTATATGCAGTTAT+GGG + Chr5:13725433-13725452 MsG0580025089.01.T01:intron 20.0%
!! TTTAATCATTTGATGTTACT+AGG + Chr5:13724568-13724587 MsG0580025089.01.T01:intron 20.0%
!!! ATAAAGAAAAGCTTTTGAAA+GGG - Chr5:13725148-13725167 None:intergenic 20.0%
!!! TATAAAGAAAAGCTTTTGAA+AGG - Chr5:13725149-13725168 None:intergenic 20.0%
!!! TATGCATTTTCTATTTGAAT+AGG + Chr5:13725334-13725353 MsG0580025089.01.T01:intron 20.0%
!!! TCTTAATAGATATTTTTTGG+AGG + Chr5:13726177-13726196 MsG0580025089.01.T01:three_prime_UTR 20.0%
!!! TTTTTATTTTCTCAGTGTTT+TGG + Chr5:13724291-13724310 MsG0580025089.01.T01:intron 20.0%
! ACAATCGAAAAATCACTAAA+AGG - Chr5:13725100-13725119 None:intergenic 25.0%
! AGTGCAAAACATAAAACATT+CGG - Chr5:13725890-13725909 None:intergenic 25.0%
! ATATATCCAAAACAATCTAC+GGG - Chr5:13726272-13726291 None:intergenic 25.0%
! ATCTTGATTAATTGCACATT+AGG - Chr5:13725617-13725636 None:intergenic 25.0%
! ATTTGTGTTCCTATTGTTTA+TGG + Chr5:13724221-13724240 MsG0580025089.01.T01:CDS 25.0%
! CATTATTATATGCAGTTATG+GGG + Chr5:13725434-13725453 MsG0580025089.01.T01:intron 25.0%
! TACCTATGAAAACAAACAAA+AGG - Chr5:13724885-13724904 None:intergenic 25.0%
! TGAGAAATGAAGAAGAAATT+GGG - Chr5:13723951-13723970 None:intergenic 25.0%
! TTGAGAAATGAAGAAGAAAT+TGG - Chr5:13723952-13723971 None:intergenic 25.0%
! TTTGTGTTCCTATTGTTTAT+GGG + Chr5:13724222-13724241 MsG0580025089.01.T01:CDS 25.0%
!!! ATGTTTTATTTGTTTTGCAC+TGG + Chr5:13725852-13725871 MsG0580025089.01.T01:intron 25.0%
!!! TAAAGAAAAGCTTTTGAAAG+GGG - Chr5:13725147-13725166 None:intergenic 25.0%
!!! TACTCTTTCGTATTTGTTTT+TGG + Chr5:13724828-13724847 MsG0580025089.01.T01:intron 25.0%
AAGAAGAAATTGGGGATTTA+GGG - Chr5:13723942-13723961 None:intergenic 30.0%
ACATTCAGATATCTCAAAAG+GGG - Chr5:13724721-13724740 None:intergenic 30.0%
AGACAATTAACTTTGTTGGA+AGG + Chr5:13726103-13726122 MsG0580025089.01.T01:three_prime_UTR 30.0%
ATGTGGATTTCTCTTAATTG+TGG + Chr5:13725956-13725975 MsG0580025089.01.T01:intron 30.0%
ATTATGAAAATGTCAAGGAC+TGG + Chr5:13724445-13724464 MsG0580025089.01.T01:CDS 30.0%
CACATTCAGATATCTCAAAA+GGG - Chr5:13724722-13724741 None:intergenic 30.0%
GAGAAATGAAGAAGAAATTG+GGG - Chr5:13723950-13723969 None:intergenic 30.0%
TATATCCAAAACAATCTACG+GGG - Chr5:13726271-13726290 None:intergenic 30.0%
TATGACTAGAGAATTGTTAG+CGG + Chr5:13725363-13725382 MsG0580025089.01.T01:intron 30.0%
TCTCGATTATGAAAATGTCA+AGG + Chr5:13724440-13724459 MsG0580025089.01.T01:CDS 30.0%
TGTCATTGAATCTTACAATG+AGG + Chr5:13724965-13724984 MsG0580025089.01.T01:CDS 30.0%
TTCTTTATAATCCCTTCTGT+TGG + Chr5:13725160-13725179 MsG0580025089.01.T01:intron 30.0%
TTGTAAGATTCAATGACAAC+AGG - Chr5:13724963-13724982 None:intergenic 30.0%
TTTAGATTGAAGACCCAATT+TGG + Chr5:13724323-13724342 MsG0580025089.01.T01:intron 30.0%
! GAATGTTTTATGTTTTGCAC+TGG + Chr5:13725889-13725908 MsG0580025089.01.T01:intron 30.0%
! TAGGGTTTTTACCTTTTTGT+CGG - Chr5:13724102-13724121 None:intergenic 30.0%
! TATTGGCTAGTGAAACTTAT+TGG + Chr5:13725705-13725724 MsG0580025089.01.T01:intron 30.0%
!! AAAGGAAACAGTTGATTTTG+TGG - Chr5:13725930-13725949 None:intergenic 30.0%
!! TGCCTTTTGTTTGTTTTCAT+AGG + Chr5:13724880-13724899 MsG0580025089.01.T01:intron 30.0%
!!! AATGAAATTTTGAGACGAGT+AGG - Chr5:13724065-13724084 None:intergenic 30.0%
!!! TTATTTGTTTTGCACTGGTT+TGG + Chr5:13725857-13725876 MsG0580025089.01.T01:intron 30.0%
!!! TTTTATGTTTTGCACTGGTT+TGG + Chr5:13725894-13725913 MsG0580025089.01.T01:intron 30.0%
AAAATTGCAAGGGACCAAAT+TGG - Chr5:13724340-13724359 None:intergenic 35.0%
AAAATTGTGAGGGACCAAAT+TGG + Chr5:13724503-13724522 MsG0580025089.01.T01:intron 35.0%
AAATTGCAAGGGACCAAATT+GGG - Chr5:13724339-13724358 None:intergenic 35.0%
AAATTGTGAGGGACCAAATT+GGG + Chr5:13724504-13724523 MsG0580025089.01.T01:intron 35.0%
AACTGTGTTTGCAATGTCTT+AGG + Chr5:13726054-13726073 MsG0580025089.01.T01:intron 35.0%
ACAGGTTTCTTTGTATTCTG+CGG - Chr5:13724945-13724964 None:intergenic 35.0%
AGAAGAATAGACATGGTTCT+TGG + Chr5:13726327-13726346 MsG0580025089.01.T01:three_prime_UTR 35.0%
ATCACTAAAAGGAATGTACC+CGG - Chr5:13725089-13725108 None:intergenic 35.0%
CAATCAGTATTGTCAATTGC+AGG - Chr5:13725579-13725598 None:intergenic 35.0%
CATTCAGATATCTCAAAAGG+GGG - Chr5:13724720-13724739 None:intergenic 35.0%
CCACATTCAGATATCTCAAA+AGG - Chr5:13724723-13724742 None:intergenic 35.0%
CTAGGTCTCAATCTCATAAA+TGG + Chr5:13724586-13724605 MsG0580025089.01.T01:intron 35.0%
GAAGAAGAAATTGGGGATTT+AGG - Chr5:13723943-13723962 None:intergenic 35.0%
GAGGTTTAGAAGAATAGACA+TGG + Chr5:13726320-13726339 MsG0580025089.01.T01:three_prime_UTR 35.0%
GCAATAGTCCCATAAACAAT+AGG - Chr5:13724233-13724252 None:intergenic 35.0%
GCGAAGACAATTAACTTTGT+TGG + Chr5:13726099-13726118 MsG0580025089.01.T01:three_prime_UTR 35.0%
GTGATTCAACAACTCTTGTT+GGG - Chr5:13724698-13724717 None:intergenic 35.0%
TAAGGTTCACCATCCAATAA+AGG - Chr5:13725806-13725825 None:intergenic 35.0%
TATTGGATGGTGAACCTTAA+TGG + Chr5:13725807-13725826 MsG0580025089.01.T01:intron 35.0%
TCAAAACAGCCATCTGATTA+GGG + Chr5:13726136-13726155 MsG0580025089.01.T01:three_prime_UTR 35.0%
TCAAGAGTAAAGACCCAATT+TGG - Chr5:13724520-13724539 None:intergenic 35.0%
TGAGATATCTGAATGTGGTT+GGG + Chr5:13724725-13724744 MsG0580025089.01.T01:CDS 35.0%
TGCACATTAGGAATGAATCA+GGG - Chr5:13725605-13725624 None:intergenic 35.0%
TTGAGATATCTGAATGTGGT+TGG + Chr5:13724724-13724743 MsG0580025089.01.T01:CDS 35.0%
TTGCACATTAGGAATGAATC+AGG - Chr5:13725606-13725625 None:intergenic 35.0%
TTGTATCCTGAAGATGAATC+TGG + Chr5:13724918-13724937 MsG0580025089.01.T01:CDS 35.0%
! AAATTGGGGATTTAGGGTTT+AGG - Chr5:13723936-13723955 None:intergenic 35.0%
! AATTGGGGATTTAGGGTTTA+GGG - Chr5:13723935-13723954 None:intergenic 35.0%
! AATTTTCTCGCAGCTCAATT+TGG + Chr5:13724354-13724373 MsG0580025089.01.T01:intron 35.0%
! ACGTTTGAGATTGAGACATT+TGG - Chr5:13723983-13724002 None:intergenic 35.0%
! CTATTGCATTTTATCTGGGT+AGG + Chr5:13724246-13724265 MsG0580025089.01.T01:CDS 35.0%
! GGGACTATTGCATTTTATCT+GGG + Chr5:13724242-13724261 MsG0580025089.01.T01:CDS 35.0%
! TGGGACTATTGCATTTTATC+TGG + Chr5:13724241-13724260 MsG0580025089.01.T01:CDS 35.0%
!! AGGACTGGTTTGAGTATTAT+TGG + Chr5:13724460-13724479 MsG0580025089.01.T01:intron 35.0%
!! TTTTGGAGGATTTCCCTTTA+GGG + Chr5:13726191-13726210 MsG0580025089.01.T01:three_prime_UTR 35.0%
!! TTTTTGGAGGATTTCCCTTT+AGG + Chr5:13726190-13726209 MsG0580025089.01.T01:three_prime_UTR 35.0%
!!! CCTTTTGAGATATCTGAATG+TGG + Chr5:13724720-13724739 MsG0580025089.01.T01:CDS 35.0%
!!! CTTCTTGTTTTTAGTGTACG+AGG + Chr5:13725780-13725799 MsG0580025089.01.T01:intron 35.0%
!!! GATGTCGAAGAGTGTTTTAT+TGG + Chr5:13725688-13725707 MsG0580025089.01.T01:intron 35.0%
!!! TAGGGTTTTGGAGAGAAATT+GGG - Chr5:13723917-13723936 None:intergenic 35.0%
!!! TTAGGGTTTTGGAGAGAAAT+TGG - Chr5:13723918-13723937 None:intergenic 35.0%
!!! TTTGTTTTTGGCTCGTTACT+TGG + Chr5:13724840-13724859 MsG0580025089.01.T01:intron 35.0%
ACAGTTGGATCTGTAAGCTT+CGG + Chr5:13724800-13724819 MsG0580025089.01.T01:intron 40.0%
AGAAATCCACATGTGCACAA+AGG - Chr5:13725948-13725967 None:intergenic 40.0%
ATCTTAGCGCTGTTGTTAAG+AGG + Chr5:13724640-13724659 MsG0580025089.01.T01:CDS 40.0%
CATGTACATCCCTAATCAGA+TGG - Chr5:13726148-13726167 None:intergenic 40.0%
CTTCCAAGTTTGACCCTAAA+GGG - Chr5:13726207-13726226 None:intergenic 40.0%
CTTCTAAACCTCCAAACAAC+TGG - Chr5:13726312-13726331 None:intergenic 40.0%
CTTGGTAAATTCAAGCCATC+CGG - Chr5:13725065-13725084 None:intergenic 40.0%
GAGATATCTGAATGTGGTTG+GGG + Chr5:13724726-13724745 MsG0580025089.01.T01:CDS 40.0%
GATTGTGATCAAGAGGGTTA+AGG + Chr5:13724190-13724209 MsG0580025089.01.T01:intron 40.0%
GGTGATTCAACAACTCTTGT+TGG - Chr5:13724699-13724718 None:intergenic 40.0%
GGTTCAGATTGTGATCAAGA+GGG + Chr5:13724184-13724203 MsG0580025089.01.T01:intron 40.0%
GTCAAAACAGCCATCTGATT+AGG + Chr5:13726135-13726154 MsG0580025089.01.T01:three_prime_UTR 40.0%
GTCGAACCTATGAATGACAA+GGG + Chr5:13725197-13725216 MsG0580025089.01.T01:CDS 40.0%
GTGCTATAGCATTGTTGCAT+AGG + Chr5:13725523-13725542 MsG0580025089.01.T01:intron 40.0%
TACTGCAGAAACCAACAGAA+GGG - Chr5:13725174-13725193 None:intergenic 40.0%
TCACTAAAAGGAATGTACCC+GGG - Chr5:13725088-13725107 None:intergenic 40.0%
TCGAACCTATGAATGACAAG+GGG + Chr5:13725198-13725217 MsG0580025089.01.T01:CDS 40.0%
TCTCCGGCAAAAAATTAGTC+CGG + Chr5:13724377-13724396 MsG0580025089.01.T01:CDS 40.0%
TCTTAGCGCTGTTGTTAAGA+GGG + Chr5:13724641-13724660 MsG0580025089.01.T01:CDS 40.0%
TCTTCCAAGTTTGACCCTAA+AGG - Chr5:13726208-13726227 None:intergenic 40.0%
TGATGCCTGTGAAAAACAGT+TGG + Chr5:13724785-13724804 MsG0580025089.01.T01:CDS 40.0%
TGGTTCAGATTGTGATCAAG+AGG + Chr5:13724183-13724202 MsG0580025089.01.T01:intron 40.0%
TTAGTGTACGAGGCCTTTAT+TGG + Chr5:13725790-13725809 MsG0580025089.01.T01:intron 40.0%
TTGTCATTCATAGGTTCGAC+CGG - Chr5:13725197-13725216 None:intergenic 40.0%
! ATCTTCCCCGTAGATTGTTT+TGG + Chr5:13726263-13726282 MsG0580025089.01.T01:three_prime_UTR 40.0%
! CTCTGAAGATTCCGACAAAA+AGG + Chr5:13724088-13724107 MsG0580025089.01.T01:CDS 40.0%
! CTTGTTGGGTTGTTGAAACT+AGG - Chr5:13724684-13724703 None:intergenic 40.0%
! CTTTTTGTCGGAATCTTCAG+AGG - Chr5:13724090-13724109 None:intergenic 40.0%
! TGCATTTTATCTGGGTAGGA+AGG + Chr5:13724250-13724269 MsG0580025089.01.T01:CDS 40.0%
! TGTTGTTGTTCCTAAGCTTC+CGG + Chr5:13725043-13725062 MsG0580025089.01.T01:CDS 40.0%
! TGTTTTTCCTGAACCTTCTG+AGG + Chr5:13724989-13725008 MsG0580025089.01.T01:CDS 40.0%
!! AAATGGACTGTTTATGTGCG+TGG + Chr5:13724603-13724622 MsG0580025089.01.T01:CDS 40.0%
!! CAGATCCAACTGTTTTTCAC+AGG - Chr5:13724793-13724812 None:intergenic 40.0%
!! GGATTTAGGGTTTAGGGTTT+TGG - Chr5:13723929-13723948 None:intergenic 40.0%
!! TTTCCCTTTAGGGTCAAACT+TGG + Chr5:13726201-13726220 MsG0580025089.01.T01:three_prime_UTR 40.0%
ACAAAGCATGCAGAACCTGT+TGG - Chr5:13725309-13725328 None:intergenic 45.0%
AGAAAAGCCTCAGAAGGTTC+AGG - Chr5:13724999-13725018 None:intergenic 45.0%
AGCAGAGGAATCATCATCAG+TGG - Chr5:13724036-13724055 None:intergenic 45.0%
AGCTTAGGAACAACAACAGC+AGG - Chr5:13725041-13725060 None:intergenic 45.0%
CAGACGAGCTCTTAAACTAG+CGG + Chr5:13725276-13725295 MsG0580025089.01.T01:CDS 45.0%
CTCCGGCAAAAAATTAGTCC+GGG + Chr5:13724378-13724397 MsG0580025089.01.T01:CDS 45.0%
CTGTGTAGAAGCCAGTTGTT+TGG + Chr5:13726298-13726317 MsG0580025089.01.T01:three_prime_UTR 45.0%
CTGTTTCCTTTGTGCACATG+TGG + Chr5:13725939-13725958 MsG0580025089.01.T01:intron 45.0%
GAGCTGCGAGAAAATTGCAA+GGG - Chr5:13724350-13724369 None:intergenic 45.0%
GCAGAGGAATCATCATCAGT+GGG - Chr5:13724035-13724054 None:intergenic 45.0%
GGGTCACGAGAAAATTGTGA+GGG + Chr5:13724493-13724512 MsG0580025089.01.T01:intron 45.0%
GGTCGAACCTATGAATGACA+AGG + Chr5:13725196-13725215 MsG0580025089.01.T01:CDS 45.0%
GTACTGCAGAAACCAACAGA+AGG - Chr5:13725175-13725194 None:intergenic 45.0%
TCCGGCAAAAAATTAGTCCG+GGG + Chr5:13724379-13724398 MsG0580025089.01.T01:CDS 45.0%
TGAGCTGCGAGAAAATTGCA+AGG - Chr5:13724351-13724370 None:intergenic 45.0%
TGGCTTGAATTTACCAAGCC+CGG + Chr5:13725067-13725086 MsG0580025089.01.T01:CDS 45.0%
TGGGTCACGAGAAAATTGTG+AGG + Chr5:13724492-13724511 MsG0580025089.01.T01:intron 45.0%
TGTACGAGGCCTTTATTGGA+TGG + Chr5:13725794-13725813 MsG0580025089.01.T01:intron 45.0%
TGTAGAAGCCAGTTGTTTGG+AGG + Chr5:13726301-13726320 MsG0580025089.01.T01:three_prime_UTR 45.0%
TTGCAGGTCGCAGAAAATAG+TGG - Chr5:13725563-13725582 None:intergenic 45.0%
! ACGAGTAGGTTTGATAGCAG+AGG - Chr5:13724051-13724070 None:intergenic 45.0%
! GTTTTTCACAGGCATCACTG+TGG - Chr5:13724782-13724801 None:intergenic 45.0%
! TCATCTTGCTGTCTCTTGAG+TGG - Chr5:13724008-13724027 None:intergenic 45.0%
!! TCTGTTGGTTTCTGCAGTAC+CGG + Chr5:13725175-13725194 MsG0580025089.01.T01:intron 45.0%
!!! TCAGATGGCTGTTTTGACTG+AGG - Chr5:13726133-13726152 None:intergenic 45.0%
!!! TCCCCGGACTAATTTTTTGC+CGG - Chr5:13724383-13724402 None:intergenic 45.0%
AAAAGGAATGTACCCGGGCT+TGG - Chr5:13725083-13725102 None:intergenic 50.0%
AAGATCATCCACTGAGCCAC+TGG + Chr5:13725234-13725253 MsG0580025089.01.T01:CDS 50.0%
CCTATGAATGACAAGGGGAG+AGG + Chr5:13725203-13725222 MsG0580025089.01.T01:CDS 50.0%
CCTCTCCCCTTGTCATTCAT+AGG - Chr5:13725206-13725225 None:intergenic 50.0%
CTGAGAAGTTCAGGAACCAG+TGG - Chr5:13725253-13725272 None:intergenic 50.0%
CTGGTTCCTGAACTTCTCAG+AGG + Chr5:13725253-13725272 MsG0580025089.01.T01:CDS 50.0%
GGCTTGAATTTACCAAGCCC+GGG + Chr5:13725068-13725087 MsG0580025089.01.T01:CDS 50.0%
GTGGCTCAGTGGATGATCTT+TGG - Chr5:13725234-13725253 None:intergenic 50.0%
GTTGTTCCTAAGCTTCCGGA+TGG + Chr5:13725047-13725066 MsG0580025089.01.T01:CDS 50.0%
TCGCAGCTCAATTTGGTCTC+CGG + Chr5:13724361-13724380 MsG0580025089.01.T01:intron 50.0%
TGCGGACCAGATTCATCTTC+AGG - Chr5:13724927-13724946 None:intergenic 50.0%
TGTGCGTGGAGCTTCTAATG+AGG + Chr5:13724617-13724636 MsG0580025089.01.T01:CDS 50.0%
TTCAAGCCATCCGGAAGCTT+AGG - Chr5:13725056-13725075 None:intergenic 50.0%
ATGAGCCAGAGACTTGTCCC+CGG - Chr5:13724399-13724418 None:intergenic 55.0%
ATGCAGAACCTGTTGGCGAG+CGG - Chr5:13725302-13725321 None:intergenic 55.0%
CGTGCGAGAAAAGCCTCAGA+AGG - Chr5:13725005-13725024 None:intergenic 55.0%
TTAGTCCGGGGACAAGTCTC+TGG + Chr5:13724391-13724410 MsG0580025089.01.T01:CDS 55.0%
TTCAGGAACCAGTGGCTCAG+TGG - Chr5:13725245-13725264 None:intergenic 55.0%
! CGTCTGCCTCTGAGAAGTTC+AGG - Chr5:13725262-13725281 None:intergenic 55.0%
ACTAGCGGCCGCTCGCCAAC+AGG + Chr5:13725291-13725310 MsG0580025089.01.T01:exon 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 13723864 13726441 13723864 ID=MsG0580025089.01;Name=MsG0580025089.01
Chr5 mRNA 13723864 13726441 13723864 ID=MsG0580025089.01.T01;Parent=MsG0580025089.01;Name=MsG0580025089.01.T01;_AED=0.16;_eAED=0.22;_QI=120|0.66|0.71|1|0.83|0.71|7|383|274
Chr5 exon 13723864 13724109 13723864 ID=MsG0580025089.01.T01:exon:20399;Parent=MsG0580025089.01.T01
Chr5 exon 13724191 13724275 13724191 ID=MsG0580025089.01.T01:exon:20400;Parent=MsG0580025089.01.T01
Chr5 exon 13724367 13724466 13724367 ID=MsG0580025089.01.T01:exon:20401;Parent=MsG0580025089.01.T01
Chr5 exon 13724590 13724811 13724590 ID=MsG0580025089.01.T01:exon:20402;Parent=MsG0580025089.01.T01
Chr5 exon 13724902 13725089 13724902 ID=MsG0580025089.01.T01:exon:20403;Parent=MsG0580025089.01.T01
Chr5 exon 13725192 13725312 13725192 ID=MsG0580025089.01.T01:exon:20404;Parent=MsG0580025089.01.T01
Chr5 exon 13726076 13726441 13726076 ID=MsG0580025089.01.T01:exon:20405;Parent=MsG0580025089.01.T01
Chr5 five_prime_UTR 13723864 13723983 13723864 ID=MsG0580025089.01.T01:five_prime_utr;Parent=MsG0580025089.01.T01
Chr5 CDS 13723984 13724109 13723984 ID=MsG0580025089.01.T01:cds;Parent=MsG0580025089.01.T01
Chr5 CDS 13724191 13724275 13724191 ID=MsG0580025089.01.T01:cds;Parent=MsG0580025089.01.T01
Chr5 CDS 13724367 13724466 13724367 ID=MsG0580025089.01.T01:cds;Parent=MsG0580025089.01.T01
Chr5 CDS 13724590 13724811 13724590 ID=MsG0580025089.01.T01:cds;Parent=MsG0580025089.01.T01
Chr5 CDS 13724902 13725089 13724902 ID=MsG0580025089.01.T01:cds;Parent=MsG0580025089.01.T01
Chr5 CDS 13725192 13725295 13725192 ID=MsG0580025089.01.T01:cds;Parent=MsG0580025089.01.T01
Chr5 three_prime_UTR 13725296 13725312 13725296 ID=MsG0580025089.01.T01:three_prime_utr;Parent=MsG0580025089.01.T01
Chr5 three_prime_UTR 13726076 13726441 13726076 ID=MsG0580025089.01.T01:three_prime_utr;Parent=MsG0580025089.01.T01
Gene Sequence

>MsG0580025089.01.T01

ATGTCTCAATCTCAAACGTTACCACTCAAGAGACAGCAAGATGAAAATCCCACTGATGATGATTCCTCTGCTATCAAACCTACTCGTCTCAAAATTTCATTATCCTCTGAAGATTCCGACAAAAAGATTGTGATCAAGAGGGTTAAGGATGTTGAAATTTGTGTTCCTATTGTTTATGGGACTATTGCATTTTATCTGGGTAGGAAGGCTACTCAATTTGGTCTCCGGCAAAAAATTAGTCCGGGGACAAGTCTCTGGCTCATTATAACAGATGTTTTAATTTATCTCGATTATGAAAATGTCAAGGACTGGTCTCAATCTCATAAATGGACTGTTTATGTGCGTGGAGCTTCTAATGAGGATCTTAGCGCTGTTGTTAAGAGGGTTGTGTTTCAGTTGCATCCTAGTTTCAACAACCCAACAAGAGTTGTTGAATCACCCCCTTTTGAGATATCTGAATGTGGTTGGGGTGAATTTGAGATAGCTATCACTCTCTTTTTCCACAGTGATGCCTGTGAAAAACAGTTGGATCTGTATCATCATTTGAAGTTGTATCCTGAAGATGAATCTGGTCCGCAGAATACAAAGAAACCTGTTGTCATTGAATCTTACAATGAGGTTGTTTTTCCTGAACCTTCTGAGGCTTTTCTCGCACGCGTGCAGAATCATCCTGCTGTTGTTGTTCCTAAGCTTCCGGATGGCTTGAATTTACCAAGCCCGGTACCGGTCGAACCTATGAATGACAAGGGGAGAGGTGACACCAAAGATCATCCACTGAGCCACTGGTTCCTGAACTTCTCAGAGGCAGACGAGCTCTTAAACTAG
Protein sequence

>MsG0580025089.01.T01

MSQSQTLPLKRQQDENPTDDDSSAIKPTRLKISLSSEDSDKKIVIKRVKDVEICVPIVYGTIAFYLGRKATQFGLRQKISPGTSLWLIITDVLIYLDYENVKDWSQSHKWTVYVRGASNEDLSAVVKRVVFQLHPSFNNPTRVVESPPFEISECGWGEFEIAITLFFHSDACEKQLDLYHHLKLYPEDESGPQNTKKPVVIESYNEVVFPEPSEAFLARVQNHPAVVVPKLPDGLNLPSPVPVEPMNDKGRGDTKDHPLSHWFLNFSEADELLN*