AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040445.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040445.01.T01 MTR_7g089770 63.781 439 29 7 1 309 1 439 1.39e-170 487
MsG0780040445.01.T01 MTR_1g050750 51.163 301 77 3 79 309 73 373 1.41e-77 247
MsG0780040445.01.T01 MTR_1g072300 25.641 273 121 7 115 307 55 325 2.70e-14 73.6
MsG0780040445.01.T01 MTR_1g022400 23.364 214 105 4 136 290 108 321 5.06e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040445.01.T01 AT1G80270 40.227 353 122 5 45 309 60 411 4.12e-74 239
MsG0780040445.01.T01 AT1G80270 40.227 353 122 5 45 309 60 411 4.12e-74 239
MsG0780040445.01.T01 AT1G80270 40.227 353 122 5 45 309 60 411 4.12e-74 239
MsG0780040445.01.T01 AT1G80270 40.227 353 122 5 45 309 60 411 4.12e-74 239
MsG0780040445.01.T01 AT1G80270 40.227 353 122 5 45 309 60 411 4.12e-74 239
MsG0780040445.01.T01 AT3G15590 38.014 292 109 4 88 309 135 424 4.37e-58 197
MsG0780040445.01.T01 AT3G15590 38.014 292 109 4 88 309 135 424 4.37e-58 197
MsG0780040445.01.T01 AT1G15480 39.403 335 123 4 55 309 75 409 6.81e-58 196
MsG0780040445.01.T01 AT1G02370 26.009 223 104 6 138 300 127 348 8.35e-11 63.2

Find 84 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTTAGCACAAACCATTT+TGG 0.188655 7:+77661377 None:intergenic
TCATCTTCAACACAAGTATT+TGG 0.261675 7:+77661420 None:intergenic
GGAATAAAGGTCTTAATGTT+AGG 0.265996 7:-77661464 MsG0780040445.01.T01:CDS
CTTATGTAGGCCATGCAATT+TGG 0.272117 7:+77660044 None:intergenic
AAGATCTTAATAGATGTAAA+AGG 0.274456 7:-77659762 MsG0780040445.01.T01:CDS
ACCCGGGCCTACTATTTATA+CGG 0.301606 7:-77661007 MsG0780040445.01.T01:CDS
GCCTACTATTTATACGGCTT+TGG 0.309918 7:-77661001 MsG0780040445.01.T01:CDS
ATCCATTCCATCAATATCAT+TGG 0.324935 7:+77659734 None:intergenic
GAAAGAGGAGGATGATGATT+TGG 0.345249 7:-77661249 MsG0780040445.01.T01:CDS
TTCAGAGCTGGAGACGCCAC+TGG 0.397612 7:-77661216 MsG0780040445.01.T01:CDS
AGAGGAGATTTCGCTGACTA+TGG 0.408351 7:-77660945 MsG0780040445.01.T01:intron
CTTGCTCTCTATGCAAAGTT+GGG 0.411000 7:-77659544 MsG0780040445.01.T01:CDS
GCTTGCTCTCTATGCAAAGT+TGG 0.416044 7:-77659545 MsG0780040445.01.T01:CDS
GAATAAAGGTCTTAATGTTA+GGG 0.422358 7:-77661463 MsG0780040445.01.T01:CDS
ATTTGGCAATTAAATCAAGT+TGG 0.425495 7:+77660061 None:intergenic
AGTTGCTCCTTCTGTATAAG+AGG 0.426149 7:-77659860 MsG0780040445.01.T01:CDS
CCGATGAAGTGGGAAGAGTT+TGG 0.430515 7:-77659516 MsG0780040445.01.T01:CDS
GAGGATGATGATTTGGAGGA+AGG 0.433278 7:-77661242 MsG0780040445.01.T01:CDS
GGCCAGTCCAATGATATTGA+TGG 0.433747 7:-77659741 MsG0780040445.01.T01:CDS
TTTGGCAATTAAATCAAGTT+GGG 0.444028 7:+77660062 None:intergenic
TTTGGAAAGTGGGTTGAAGA+TGG 0.445342 7:-77660983 MsG0780040445.01.T01:CDS
CATATTGGCGAAATCATTTG+AGG 0.452079 7:-77661748 MsG0780040445.01.T01:five_prime_UTR
CATGGTGTTTGCGAAAAGTA+AGG 0.452191 7:+77661681 None:intergenic
AGGTTGAAGAAGAAATGAAA+TGG 0.453632 7:+77661701 None:intergenic
GTCGAGCTTCATTACCTCTC+AGG 0.457449 7:-77661648 MsG0780040445.01.T01:intron
GAGTAGAAAGAGGGCTGATT+CGG 0.458048 7:-77661056 MsG0780040445.01.T01:CDS
GCATCTTGAATTCGTTGAAA+GGG 0.459325 7:-77660094 MsG0780040445.01.T01:CDS
TTGGAAAGTGGGTTGAAGAT+GGG 0.463776 7:-77660982 MsG0780040445.01.T01:CDS
GATGTGGATGAGGTTTCAAC+GGG 0.463823 7:-77661088 MsG0780040445.01.T01:CDS
CGCTATCGCTGATGTGGATG+AGG 0.472276 7:-77661098 MsG0780040445.01.T01:CDS
AGCCGTATAAATAGTAGGCC+CGG 0.474374 7:+77661005 None:intergenic
CAAATTGCATGGCCTACATA+AGG 0.477730 7:-77660043 MsG0780040445.01.T01:CDS
GTCCAATGATATTGATGGAA+TGG 0.489800 7:-77659736 MsG0780040445.01.T01:CDS
AGAGGAGGATGATGATTTGG+AGG 0.492622 7:-77661246 MsG0780040445.01.T01:CDS
GATTTAATTGCCAAATTGCA+TGG 0.493218 7:-77660054 MsG0780040445.01.T01:CDS
ATCTTAAAAGTCAGAGGAGA+AGG 0.496409 7:+77659780 None:intergenic
ATTTATACGGCTTTGGAAAG+TGG 0.498569 7:-77660994 MsG0780040445.01.T01:CDS
TTTATACGGCTTTGGAAAGT+GGG 0.499220 7:-77660993 MsG0780040445.01.T01:CDS
TTACACGCAAATGGTGTAAG+AGG 0.501321 7:+77659885 None:intergenic
AGCAACTGATTACACGCAAA+TGG 0.506840 7:+77659876 None:intergenic
GATGGAAGGTGAAAACTTGA+AGG 0.511982 7:-77659593 MsG0780040445.01.T01:CDS
CCAAACTCTTCCCACTTCAT+CGG 0.515501 7:+77659516 None:intergenic
GTGTAGCTGCAATTGAAGCC+TGG 0.516400 7:-77659459 MsG0780040445.01.T01:CDS
TGTCAGTCCTCTTATACAGA+AGG 0.520888 7:+77659853 None:intergenic
AGCTGATGTGTTATTGCTGA+TGG 0.521173 7:-77659820 MsG0780040445.01.T01:CDS
TCCAAAGCCGTATAAATAGT+AGG 0.522968 7:+77661000 None:intergenic
AGCATCTTGAATTCGTTGAA+AGG 0.529229 7:-77660095 MsG0780040445.01.T01:CDS
GTGAAAACTTGAAGGAGAAT+CGG 0.531723 7:-77659585 MsG0780040445.01.T01:CDS
ATATTGGCGAAATCATTTGA+GGG 0.533519 7:-77661747 MsG0780040445.01.T01:five_prime_UTR
GTTGGGAATGGCCGATGAAG+TGG 0.533639 7:-77659527 MsG0780040445.01.T01:CDS
TTCCATCAATATCATTGGAC+TGG 0.536076 7:+77659739 None:intergenic
GGAAGAGGTCGAGTAGAAAG+AGG 0.540404 7:-77661066 MsG0780040445.01.T01:CDS
TGTAGCTGCAATTGAAGCCT+GGG 0.545267 7:-77659458 MsG0780040445.01.T01:CDS
ACTTGTGTTGAAGATGAGGC+TGG 0.545542 7:-77661414 MsG0780040445.01.T01:CDS
TGTAAACTTCTGCCTTATGT+AGG 0.546145 7:+77660031 None:intergenic
ATGAGGTTTCAACGGGGAAG+AGG 0.546654 7:-77661081 MsG0780040445.01.T01:CDS
GCCGTATAAATAGTAGGCCC+GGG 0.557377 7:+77661006 None:intergenic
GCTACACAATCCTCAACTGA+AGG 0.560832 7:+77659475 None:intergenic
TGAGACACGCCCTTCAGTTG+AGG 0.561075 7:-77659485 MsG0780040445.01.T01:CDS
TGATGTGGATGAGGTTTCAA+CGG 0.567200 7:-77661089 MsG0780040445.01.T01:CDS
AGCTATTATGAATGGTACCC+GGG 0.572087 7:-77661023 MsG0780040445.01.T01:CDS
TCAGAGCTGGAGACGCCACT+GGG 0.578043 7:-77661215 MsG0780040445.01.T01:intron
AGCTCGACGAAGAGCCCACA+TGG 0.581932 7:+77661663 None:intergenic
AAGCTATTATGAATGGTACC+CGG 0.583948 7:-77661024 MsG0780040445.01.T01:CDS
CTCATCCACATCAGCGATAG+CGG 0.587343 7:+77661099 None:intergenic
TCTCTATGCAAAGTTGGGAA+TGG 0.590332 7:-77659539 MsG0780040445.01.T01:CDS
AGTTACCGCTATCGCTGATG+TGG 0.600374 7:-77661104 MsG0780040445.01.T01:CDS
ATTAAGATCTTAAAAGTCAG+AGG 0.602071 7:+77659774 None:intergenic
TGGGAAAGAATTGAGCAGAG+AGG 0.602690 7:-77660963 MsG0780040445.01.T01:CDS
TGAAGTGGGAAGAGTTTGGA+AGG 0.608224 7:-77659512 MsG0780040445.01.T01:CDS
TTGGGAATGGCCGATGAAGT+GGG 0.612788 7:-77659526 MsG0780040445.01.T01:CDS
GAACAATTTGAAGAAAGCAG+AGG 0.620162 7:-77659940 MsG0780040445.01.T01:CDS
GAAGAGGTCGAGTAGAAAGA+GGG 0.621628 7:-77661065 MsG0780040445.01.T01:CDS
CTGGTGCGAAACTACGAAAG+AGG 0.621852 7:-77661264 MsG0780040445.01.T01:CDS
TTTAGGGTTTGTTACCTGAG+AGG 0.623266 7:+77661634 None:intergenic
AAAACTTGAAGGAGAATCGG+TGG 0.641430 7:-77659582 MsG0780040445.01.T01:CDS
CTACACAATCCTCAACTGAA+GGG 0.651615 7:+77659476 None:intergenic
AAATACTTGTGTTGAAGATG+AGG 0.662370 7:-77661418 MsG0780040445.01.T01:CDS
TGTTGATCAAATGAGAGCTG+AGG 0.662534 7:-77659706 MsG0780040445.01.T01:intron
GTGCGAAACTACGAAAGAGG+AGG 0.674087 7:-77661261 MsG0780040445.01.T01:CDS
AAACTTGAAGGAGAATCGGT+GGG 0.677432 7:-77659581 MsG0780040445.01.T01:CDS
ACGGTGTTGAAGGAGATGGA+AGG 0.689909 7:-77659607 MsG0780040445.01.T01:intron
GTAGCTGCAATTGAAGCCTG+GGG 0.756156 7:-77659457 MsG0780040445.01.T01:CDS
ATGTGGATGAGGTTTCAACG+GGG 0.824468 7:-77661087 MsG0780040445.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTTATTTTTTTTTG+TGG - Chr7:77660400-77660419 MsG0780040445.01.T01:intron 10.0%
!!! CTTATTTATAATTATTTTGT+TGG - Chr7:77661044-77661063 MsG0780040445.01.T01:CDS 10.0%
!! AAGTAGATAATTAGTTAAAA+TGG + Chr7:77659646-77659665 None:intergenic 15.0%
!! AATTATAAATAAGATTTCAC+TGG + Chr7:77661037-77661056 None:intergenic 15.0%
!! ATCGAAATAATAAAAAAAAG+GGG + Chr7:77659595-77659614 None:intergenic 15.0%
!! GATCGAAATAATAAAAAAAA+GGG + Chr7:77659596-77659615 None:intergenic 15.0%
!! TTATTCCTATACAAAAAAAA+AGG + Chr7:77659718-77659737 None:intergenic 15.0%
!!! ATGGTTTTTTAAATATACTT+TGG - Chr7:77659884-77659903 MsG0780040445.01.T01:CDS 15.0%
!!! GGAAATTTTTAATAAAATGA+AGG - Chr7:77661276-77661295 MsG0780040445.01.T01:CDS 15.0%
!!! TAAAACTTTAAAATGTTGAA+AGG + Chr7:77660353-77660372 None:intergenic 15.0%
!!! TATTTTTTTTTGTGGATATT+GGG - Chr7:77660408-77660427 MsG0780040445.01.T01:intron 15.0%
!!! TGGTTTTTTAAATATACTTT+GGG - Chr7:77659885-77659904 MsG0780040445.01.T01:CDS 15.0%
!!! TTATTTTTTTTTGTGGATAT+TGG - Chr7:77660407-77660426 MsG0780040445.01.T01:intron 15.0%
!!! TTTTTTTTGTATAGGAATAA+AGG - Chr7:77659718-77659737 MsG0780040445.01.T01:CDS 15.0%
!! AAAACATCATATAGTAAAAC+TGG + Chr7:77661014-77661033 None:intergenic 20.0%
!! AAGATCTTAATAGATGTAAA+AGG - Chr7:77661433-77661452 MsG0780040445.01.T01:CDS 20.0%
!! CGATCGAAATAATAAAAAAA+AGG + Chr7:77659597-77659616 None:intergenic 20.0%
!! CTACTTCAAATTTCATATTA+GGG - Chr7:77659660-77659679 MsG0780040445.01.T01:intron 20.0%
!! CTTAAATACCATATTAATTC+TGG - Chr7:77660931-77660950 MsG0780040445.01.T01:intron 20.0%
!! GTTATTGTTCATGTTATATT+AGG + Chr7:77660526-77660545 None:intergenic 20.0%
!! TAGTTAAAATGGAAAATGAA+AGG + Chr7:77659635-77659654 None:intergenic 20.0%
!! TCTACTTCAAATTTCATATT+AGG - Chr7:77659659-77659678 MsG0780040445.01.T01:intron 20.0%
!!! ATTGTCCTTTTTTTTTGTAT+AGG - Chr7:77659710-77659729 MsG0780040445.01.T01:CDS 20.0%
!!! CTTTTTAAAGCTATTATGAA+TGG - Chr7:77660164-77660183 MsG0780040445.01.T01:intron 20.0%
! AAAAAGGGGAATAATAGTTT+AGG + Chr7:77659581-77659600 None:intergenic 25.0%
! AAAAGGGGAATAATAGTTTA+GGG + Chr7:77659580-77659599 None:intergenic 25.0%
! AAATATACTTTGGGTAGATT+AGG - Chr7:77659894-77659913 MsG0780040445.01.T01:CDS 25.0%
! AATATACTTTGGGTAGATTA+GGG - Chr7:77659895-77659914 MsG0780040445.01.T01:CDS 25.0%
! ATTAAGATCTTAAAAGTCAG+AGG + Chr7:77661424-77661443 None:intergenic 25.0%
! ATTGTATTGAAATATAGCGT+AGG - Chr7:77660692-77660711 MsG0780040445.01.T01:intron 25.0%
! ATTTGGCAATTAAATCAAGT+TGG + Chr7:77661137-77661156 None:intergenic 25.0%
! GAATAAAGGTCTTAATGTTA+GGG - Chr7:77659732-77659751 MsG0780040445.01.T01:CDS 25.0%
! GATAATATACCGAACTTTAT+TGG - Chr7:77661216-77661235 MsG0780040445.01.T01:CDS 25.0%
! GCATGATGATAAAGTTAAAA+CGG - Chr7:77661569-77661588 MsG0780040445.01.T01:intron 25.0%
! TTTGGCAATTAAATCAAGTT+GGG + Chr7:77661136-77661155 None:intergenic 25.0%
!! GCCAAAAATCTACAATTTTA+AGG + Chr7:77660600-77660619 None:intergenic 25.0%
!! GCCTTAAAATTGTAGATTTT+TGG - Chr7:77660596-77660615 MsG0780040445.01.T01:intron 25.0%
!! TTTTGTTAAAATCTAGCACA+AGG - Chr7:77660459-77660478 MsG0780040445.01.T01:intron 25.0%
!!! ACTTTTTTATTCTCCCAAAA+TGG - Chr7:77659804-77659823 MsG0780040445.01.T01:CDS 25.0%
!!! ATAAATAAAAGTGCCTTATG+TGG + Chr7:77660831-77660850 None:intergenic 25.0%
AAATACTTGTGTTGAAGATG+AGG - Chr7:77659777-77659796 MsG0780040445.01.T01:CDS 30.0%
AAATTCCAGAATCCTTTAGA+GGG - Chr7:77661192-77661211 MsG0780040445.01.T01:intron 30.0%
AATTGTGGCCAGAATTAATA+TGG + Chr7:77660942-77660961 None:intergenic 30.0%
AGGTTGAAGAAGAAATGAAA+TGG + Chr7:77659497-77659516 None:intergenic 30.0%
AGTGAAAATACATTCTCTGT+TGG + Chr7:77660728-77660747 None:intergenic 30.0%
ATCCATTCCATCAATATCAT+TGG + Chr7:77661464-77661483 None:intergenic 30.0%
GATTTAATTGCCAAATTGCA+TGG - Chr7:77661141-77661160 MsG0780040445.01.T01:intron 30.0%
GATTTATTTGAAAGCTTTGC+AGG - Chr7:77660291-77660310 MsG0780040445.01.T01:intron 30.0%
GGAATAAAGGTCTTAATGTT+AGG - Chr7:77659731-77659750 MsG0780040445.01.T01:CDS 30.0%
TATTGAAATATAGCGTAGGA+TGG - Chr7:77660696-77660715 MsG0780040445.01.T01:intron 30.0%
TCATCTTCAACACAAGTATT+TGG + Chr7:77659778-77659797 None:intergenic 30.0%
TTATATTAGGCAGTGCTTAA+TGG + Chr7:77660513-77660532 None:intergenic 30.0%
! TAAAGTTAAAACGGTGTTGA+AGG - Chr7:77661578-77661597 MsG0780040445.01.T01:intron 30.0%
!!! ATCATTTGAGGGTTTTAACT+AGG - Chr7:77659459-77659478 MsG0780040445.01.T01:CDS 30.0%
!!! TCATTTGAGGGTTTTAACTA+GGG - Chr7:77659460-77659479 MsG0780040445.01.T01:CDS 30.0%
AAGCTATTATGAATGGTACC+CGG - Chr7:77660171-77660190 MsG0780040445.01.T01:intron 35.0%
AGCATCTTGAATTCGTTGAA+AGG - Chr7:77661100-77661119 MsG0780040445.01.T01:CDS 35.0%
ATCTTAAAAGTCAGAGGAGA+AGG + Chr7:77661418-77661437 None:intergenic 35.0%
ATGAATCGATGTTACTGTTC+GGG - Chr7:77659853-77659872 MsG0780040445.01.T01:CDS 35.0%
ATGATAAGTTTCATGTTCGC+AGG - Chr7:77660805-77660824 MsG0780040445.01.T01:intron 35.0%
CAATAACCTTACATAACACC+AGG - Chr7:77660539-77660558 MsG0780040445.01.T01:intron 35.0%
CACAGTTAGCCAATAAAGTT+CGG + Chr7:77661228-77661247 None:intergenic 35.0%
GAAATTCCAGAATCCTTTAG+AGG - Chr7:77661191-77661210 MsG0780040445.01.T01:intron 35.0%
GAACAATTTGAAGAAAGCAG+AGG - Chr7:77661255-77661274 MsG0780040445.01.T01:CDS 35.0%
GATGAATCGATGTTACTGTT+CGG - Chr7:77659852-77659871 MsG0780040445.01.T01:CDS 35.0%
GCATCTTGAATTCGTTGAAA+GGG - Chr7:77661101-77661120 MsG0780040445.01.T01:CDS 35.0%
GGTATATTATCTCCCTCTAA+AGG + Chr7:77661207-77661226 None:intergenic 35.0%
GTCCAATGATATTGATGGAA+TGG - Chr7:77661459-77661478 MsG0780040445.01.T01:CDS 35.0%
GTGAAAACTTGAAGGAGAAT+CGG - Chr7:77661610-77661629 MsG0780040445.01.T01:intron 35.0%
TCCAAAGCCGTATAAATAGT+AGG + Chr7:77660198-77660217 None:intergenic 35.0%
TGTAAACTTCTGCCTTATGT+AGG + Chr7:77661167-77661186 None:intergenic 35.0%
TTAATGGCAACAAACATCCA+GGG + Chr7:77660497-77660516 None:intergenic 35.0%
TTCCATCAATATCATTGGAC+TGG + Chr7:77661459-77661478 None:intergenic 35.0%
! AAAATGGTTTGTGCTAAGTG+TGG - Chr7:77659820-77659839 MsG0780040445.01.T01:CDS 35.0%
! ACACTTAGCACAAACCATTT+TGG + Chr7:77659821-77659840 None:intergenic 35.0%
! ACAGCAGTGATTTTCAATTG+CGG + Chr7:77660976-77660995 None:intergenic 35.0%
! CAACTATACAAAGGCAGTTT+TGG - Chr7:77661524-77661543 MsG0780040445.01.T01:intron 35.0%
! CACTTAGCACAAACCATTTT+GGG + Chr7:77659820-77659839 None:intergenic 35.0%
!! ATTTATACGGCTTTGGAAAG+TGG - Chr7:77660201-77660220 MsG0780040445.01.T01:intron 35.0%
!! TATACAAAGGCAGTTTTGGT+TGG - Chr7:77661528-77661547 MsG0780040445.01.T01:intron 35.0%
!! TTTATACGGCTTTGGAAAGT+GGG - Chr7:77660202-77660221 MsG0780040445.01.T01:intron 35.0%
!!! ATACAAAGGCAGTTTTGGTT+GGG - Chr7:77661529-77661548 MsG0780040445.01.T01:intron 35.0%
AAAACTTGAAGGAGAATCGG+TGG - Chr7:77661613-77661632 MsG0780040445.01.T01:intron 40.0%
AAACTTGAAGGAGAATCGGT+GGG - Chr7:77661614-77661633 MsG0780040445.01.T01:intron 40.0%
AACCTTACATAACACCAGGA+TGG - Chr7:77660543-77660562 MsG0780040445.01.T01:intron 40.0%
ACACACACAAAGAACTACTC+AGG + Chr7:77660759-77660778 None:intergenic 40.0%
ACTGCCTTTGTATAGTTGTC+CGG + Chr7:77661522-77661541 None:intergenic 40.0%
AGCAACTGATTACACGCAAA+TGG + Chr7:77661322-77661341 None:intergenic 40.0%
AGCTATTATGAATGGTACCC+GGG - Chr7:77660172-77660191 MsG0780040445.01.T01:intron 40.0%
AGTATTCCCATAAAACGCCA+TGG + Chr7:77660574-77660593 None:intergenic 40.0%
AGTGATGAATCGGAAATTGC+GGG - Chr7:77660051-77660070 MsG0780040445.01.T01:CDS 40.0%
AGTTGCTCCTTCTGTATAAG+AGG - Chr7:77661335-77661354 MsG0780040445.01.T01:intron 40.0%
CAAATTGCATGGCCTACATA+AGG - Chr7:77661152-77661171 MsG0780040445.01.T01:intron 40.0%
CATGGTGTTTGCGAAAAGTA+AGG + Chr7:77659517-77659536 None:intergenic 40.0%
CTACACAATCCTCAACTGAA+GGG + Chr7:77661722-77661741 None:intergenic 40.0%
CTTAATGGCAACAAACATCC+AGG + Chr7:77660498-77660517 None:intergenic 40.0%
CTTATGTAGGCCATGCAATT+TGG + Chr7:77661154-77661173 None:intergenic 40.0%
CTTGCTCTCTATGCAAAGTT+GGG - Chr7:77661651-77661670 MsG0780040445.01.T01:CDS 40.0%
GAAAGAGGAGGATGATGATT+TGG - Chr7:77659946-77659965 MsG0780040445.01.T01:intron 40.0%
GAGTGATGAATCGGAAATTG+CGG - Chr7:77660050-77660069 MsG0780040445.01.T01:CDS 40.0%
GATGGAAGGTGAAAACTTGA+AGG - Chr7:77661602-77661621 MsG0780040445.01.T01:intron 40.0%
GCCTACTATTTATACGGCTT+TGG - Chr7:77660194-77660213 MsG0780040445.01.T01:intron 40.0%
TAATGGCAACAAACATCCAG+GGG + Chr7:77660496-77660515 None:intergenic 40.0%
TCAAATAAATCTTCCGCCTC+CGG + Chr7:77660282-77660301 None:intergenic 40.0%
TCTCTATGCAAAGTTGGGAA+TGG - Chr7:77661656-77661675 MsG0780040445.01.T01:CDS 40.0%
TGAACCGGACAACTATACAA+AGG - Chr7:77661515-77661534 MsG0780040445.01.T01:intron 40.0%
TGATGTGGATGAGGTTTCAA+CGG - Chr7:77660106-77660125 MsG0780040445.01.T01:CDS 40.0%
TGGACACAAGTCACTATTGA+TGG - Chr7:77660657-77660676 MsG0780040445.01.T01:intron 40.0%
TGGGTGAGGAAAGTGAAAAA+GGG - Chr7:77659999-77660018 MsG0780040445.01.T01:intron 40.0%
TGTCAGTCCTCTTATACAGA+AGG + Chr7:77661345-77661364 None:intergenic 40.0%
TGTTGATCAAATGAGAGCTG+AGG - Chr7:77661489-77661508 MsG0780040445.01.T01:intron 40.0%
TTACACGCAAATGGTGTAAG+AGG + Chr7:77661313-77661332 None:intergenic 40.0%
TTCTGACGAGAGTGATGAAT+CGG - Chr7:77660041-77660060 MsG0780040445.01.T01:CDS 40.0%
! ACTTTTCGCAAACACCATGT+GGG - Chr7:77659518-77659537 MsG0780040445.01.T01:CDS 40.0%
! AGCTGATGTGTTATTGCTGA+TGG - Chr7:77661375-77661394 MsG0780040445.01.T01:intron 40.0%
! ATTTTCAATTGCGGTCCACA+AGG + Chr7:77660967-77660986 None:intergenic 40.0%
! GGGTAGATTAGGGTTTTCTT+CGG - Chr7:77659905-77659924 MsG0780040445.01.T01:CDS 40.0%
! TAAAACGGTGTTGAAGGAGA+TGG - Chr7:77661584-77661603 MsG0780040445.01.T01:intron 40.0%
! TACTTTTCGCAAACACCATG+TGG - Chr7:77659517-77659536 MsG0780040445.01.T01:CDS 40.0%
! TATCTCCCTCTAAAGGATTC+TGG + Chr7:77661200-77661219 None:intergenic 40.0%
! TTTTCAATTGCGGTCCACAA+GGG + Chr7:77660966-77660985 None:intergenic 40.0%
!! ATGACCCAGTTTGTTGGTTT+GGG - Chr7:77660903-77660922 MsG0780040445.01.T01:intron 40.0%
!! TTGGAAAGTGGGTTGAAGAT+GGG - Chr7:77660213-77660232 MsG0780040445.01.T01:intron 40.0%
!! TTTAGGGTTTGTTACCTGAG+AGG + Chr7:77659564-77659583 None:intergenic 40.0%
!! TTTGGAAAGTGGGTTGAAGA+TGG - Chr7:77660212-77660231 MsG0780040445.01.T01:intron 40.0%
!!! TAGATTTTTGGCTTTCTGCC+AGG - Chr7:77660608-77660627 MsG0780040445.01.T01:intron 40.0%
ACCCGGGCCTACTATTTATA+CGG - Chr7:77660188-77660207 MsG0780040445.01.T01:intron 45.0%
ACTTGTGTTGAAGATGAGGC+TGG - Chr7:77659781-77659800 MsG0780040445.01.T01:CDS 45.0%
AGCCGTATAAATAGTAGGCC+CGG + Chr7:77660193-77660212 None:intergenic 45.0%
ATCACCCCAAACCAACAAAC+TGG + Chr7:77660911-77660930 None:intergenic 45.0%
ATGTGGATGAGGTTTCAACG+GGG - Chr7:77660108-77660127 MsG0780040445.01.T01:CDS 45.0%
CCAAACTCTTCCCACTTCAT+CGG + Chr7:77661682-77661701 None:intergenic 45.0%
CTGGGTGAGGAAAGTGAAAA+AGG - Chr7:77659998-77660017 MsG0780040445.01.T01:intron 45.0%
CTTACATAACACCAGGATGG+CGG - Chr7:77660546-77660565 MsG0780040445.01.T01:intron 45.0%
GAAGAGGTCGAGTAGAAAGA+GGG - Chr7:77660130-77660149 MsG0780040445.01.T01:intron 45.0%
GAGTAGAAAGAGGGCTGATT+CGG - Chr7:77660139-77660158 MsG0780040445.01.T01:intron 45.0%
GATGTGGATGAGGTTTCAAC+GGG - Chr7:77660107-77660126 MsG0780040445.01.T01:CDS 45.0%
GCTAACATGACCCAGTTTGT+TGG - Chr7:77660897-77660916 MsG0780040445.01.T01:intron 45.0%
GCTACACAATCCTCAACTGA+AGG + Chr7:77661723-77661742 None:intergenic 45.0%
GCTTGCTCTCTATGCAAAGT+TGG - Chr7:77661650-77661669 MsG0780040445.01.T01:CDS 45.0%
GGCCAGTCCAATGATATTGA+TGG - Chr7:77661454-77661473 MsG0780040445.01.T01:CDS 45.0%
GGTAACTCCAGCTCATTATG+TGG + Chr7:77660078-77660097 None:intergenic 45.0%
GTGATGAATCGGAAATTGCG+GGG - Chr7:77660052-77660071 MsG0780040445.01.T01:CDS 45.0%
GTTGGGCATTACATCTCATG+CGG - Chr7:77661546-77661565 MsG0780040445.01.T01:intron 45.0%
TCACCCCAAACCAACAAACT+GGG + Chr7:77660910-77660929 None:intergenic 45.0%
TGAAGTGGGAAGAGTTTGGA+AGG - Chr7:77661683-77661702 MsG0780040445.01.T01:exon 45.0%
TGGGAAAGAATTGAGCAGAG+AGG - Chr7:77660232-77660251 MsG0780040445.01.T01:intron 45.0%
TGTAGCTGCAATTGAAGCCT+GGG - Chr7:77661737-77661756 MsG0780040445.01.T01:five_prime_UTR 45.0%
TTGGGCATTACATCTCATGC+GGG - Chr7:77661547-77661566 MsG0780040445.01.T01:intron 45.0%
! AGAGGAGATTTCGCTGACTA+TGG - Chr7:77660250-77660269 MsG0780040445.01.T01:intron 45.0%
! AGAGGAGGATGATGATTTGG+AGG - Chr7:77659949-77659968 MsG0780040445.01.T01:intron 45.0%
! GAGGATGATGATTTGGAGGA+AGG - Chr7:77659953-77659972 MsG0780040445.01.T01:intron 45.0%
! TCGCTGACTATGGTAATCTC+CGG - Chr7:77660260-77660279 MsG0780040445.01.T01:intron 45.0%
! TTAGGGTTTTCTTCGGAAGC+TGG - Chr7:77659912-77659931 MsG0780040445.01.T01:CDS 45.0%
! TTTTCACTTTCCTCACCCAG+TGG + Chr7:77659998-77660017 None:intergenic 45.0%
!! CATGACCCAGTTTGTTGGTT+TGG - Chr7:77660902-77660921 MsG0780040445.01.T01:intron 45.0%
!! TGACCCAGTTTGTTGGTTTG+GGG - Chr7:77660904-77660923 MsG0780040445.01.T01:intron 45.0%
!! TGAGAGCTGAGGTATTGAAC+CGG - Chr7:77661500-77661519 MsG0780040445.01.T01:intron 45.0%
!!! TGGTTTTGTAGCTCTCAGAG+TGG - Chr7:77661064-77661083 MsG0780040445.01.T01:CDS 45.0%
ACTATGGTAATCTCCGGAGG+CGG - Chr7:77660266-77660285 MsG0780040445.01.T01:intron 50.0%
AGGTCCATCATCCGCAATCT+CGG - Chr7:77660628-77660647 MsG0780040445.01.T01:intron 50.0%
AGTTACCGCTATCGCTGATG+TGG - Chr7:77660091-77660110 MsG0780040445.01.T01:CDS 50.0%
ATCCGCAATCTCGGTAACAC+TGG - Chr7:77660637-77660656 MsG0780040445.01.T01:intron 50.0%
ATGAGGTTTCAACGGGGAAG+AGG - Chr7:77660114-77660133 MsG0780040445.01.T01:CDS 50.0%
CCGATGAAGTGGGAAGAGTT+TGG - Chr7:77661679-77661698 MsG0780040445.01.T01:exon 50.0%
CTCATCCACATCAGCGATAG+CGG + Chr7:77660099-77660118 None:intergenic 50.0%
CTGACTATGGTAATCTCCGG+AGG - Chr7:77660263-77660282 MsG0780040445.01.T01:intron 50.0%
CTGGTGCGAAACTACGAAAG+AGG - Chr7:77659931-77659950 MsG0780040445.01.T01:CDS 50.0%
GCCGTATAAATAGTAGGCCC+GGG + Chr7:77660192-77660211 None:intergenic 50.0%
GGAAGAGGTCGAGTAGAAAG+AGG - Chr7:77660129-77660148 MsG0780040445.01.T01:intron 50.0%
GTAGCTGCAATTGAAGCCTG+GGG - Chr7:77661738-77661757 MsG0780040445.01.T01:five_prime_UTR 50.0%
GTCCAGTGTTACCGAGATTG+CGG + Chr7:77660642-77660661 None:intergenic 50.0%
GTCGAGCTTCATTACCTCTC+AGG - Chr7:77659547-77659566 MsG0780040445.01.T01:CDS 50.0%
GTGCGAAACTACGAAAGAGG+AGG - Chr7:77659934-77659953 MsG0780040445.01.T01:CDS 50.0%
GTGTAGCTGCAATTGAAGCC+TGG - Chr7:77661736-77661755 MsG0780040445.01.T01:five_prime_UTR 50.0%
GTTACCGAGATTGCGGATGA+TGG + Chr7:77660635-77660654 None:intergenic 50.0%
TCATGTTCGCAGGCCACATA+AGG - Chr7:77660815-77660834 MsG0780040445.01.T01:intron 50.0%
TTGGGAATGGCCGATGAAGT+GGG - Chr7:77661669-77661688 MsG0780040445.01.T01:exon 50.0%
! ACGGTGTTGAAGGAGATGGA+AGG - Chr7:77661588-77661607 MsG0780040445.01.T01:intron 50.0%
! CGATGTTACTGTTCGGGTTC+TGG - Chr7:77659859-77659878 MsG0780040445.01.T01:CDS 50.0%
! TACTGTTCGGGTTCTGGTCA+TGG - Chr7:77659865-77659884 MsG0780040445.01.T01:CDS 50.0%
!! CGCCATCCTGGTGTTATGTA+AGG + Chr7:77660548-77660567 None:intergenic 50.0%
!! GGAGGAAGGTTTTTCAGAGC+TGG - Chr7:77659967-77659986 MsG0780040445.01.T01:intron 50.0%
CGCTATCGCTGATGTGGATG+AGG - Chr7:77660097-77660116 MsG0780040445.01.T01:CDS 55.0%
GTTGGGAATGGCCGATGAAG+TGG - Chr7:77661668-77661687 MsG0780040445.01.T01:exon 55.0%
TCTGGCCACAATTGCCCTTG+TGG - Chr7:77660949-77660968 MsG0780040445.01.T01:CDS 55.0%
TGAGACACGCCCTTCAGTTG+AGG - Chr7:77661710-77661729 MsG0780040445.01.T01:five_prime_UTR 55.0%
! GCGGCACCATGGCGTTTTAT+GGG - Chr7:77660565-77660584 MsG0780040445.01.T01:intron 55.0%
!! GAGATTGCGGATGATGGACC+TGG + Chr7:77660629-77660648 None:intergenic 55.0%
AGCTCGACGAAGAGCCCACA+TGG + Chr7:77659535-77659554 None:intergenic 60.0%
CAAGGCATGAGCAACACCCC+TGG - Chr7:77660477-77660496 MsG0780040445.01.T01:intron 60.0%
GCGGTCCACAAGGGCAATTG+TGG + Chr7:77660957-77660976 None:intergenic 60.0%
TCAGAGCTGGAGACGCCACT+GGG - Chr7:77659980-77659999 MsG0780040445.01.T01:intron 60.0%
TGCGGGGCCACATAATGAGC+TGG - Chr7:77660068-77660087 MsG0780040445.01.T01:CDS 60.0%
TTCAGAGCTGGAGACGCCAC+TGG - Chr7:77659979-77659998 MsG0780040445.01.T01:intron 60.0%
! GGCGGCACCATGGCGTTTTA+TGG - Chr7:77660564-77660583 MsG0780040445.01.T01:intron 60.0%
! ACACCAGGATGGCGGCACCA+TGG - Chr7:77660554-77660573 MsG0780040445.01.T01:intron 65.0%
GCTGGAGACGCCACTGGGTG+AGG - Chr7:77659985-77660004 MsG0780040445.01.T01:intron 70.0%
!! ACGCCATGGTGCCGCCATCC+TGG + Chr7:77660560-77660579 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 77659450 77661767 77659450 ID=MsG0780040445.01;Name=MsG0780040445.01
Chr7 mRNA 77659450 77661767 77659450 ID=MsG0780040445.01.T01;Parent=MsG0780040445.01;Name=MsG0780040445.01.T01;_AED=0.44;_eAED=0.44;_QI=84|0.16|0.14|1|1|1|7|0|310
Chr7 exon 77659450 77659617 77659450 ID=MsG0780040445.01.T01:exon:15498;Parent=MsG0780040445.01.T01
Chr7 exon 77659707 77659961 77659707 ID=MsG0780040445.01.T01:exon:15497;Parent=MsG0780040445.01.T01
Chr7 exon 77660038 77660142 77660038 ID=MsG0780040445.01.T01:exon:15496;Parent=MsG0780040445.01.T01
Chr7 exon 77660946 77661130 77660946 ID=MsG0780040445.01.T01:exon:15495;Parent=MsG0780040445.01.T01
Chr7 exon 77661216 77661306 77661216 ID=MsG0780040445.01.T01:exon:15494;Parent=MsG0780040445.01.T01
Chr7 exon 77661392 77661485 77661392 ID=MsG0780040445.01.T01:exon:15493;Parent=MsG0780040445.01.T01
Chr7 exon 77661649 77661767 77661649 ID=MsG0780040445.01.T01:exon:15492;Parent=MsG0780040445.01.T01
Chr7 five_prime_UTR 77661684 77661767 77661684 ID=MsG0780040445.01.T01:five_prime_utr;Parent=MsG0780040445.01.T01
Chr7 CDS 77661649 77661683 77661649 ID=MsG0780040445.01.T01:cds;Parent=MsG0780040445.01.T01
Chr7 CDS 77661392 77661485 77661392 ID=MsG0780040445.01.T01:cds;Parent=MsG0780040445.01.T01
Chr7 CDS 77661216 77661306 77661216 ID=MsG0780040445.01.T01:cds;Parent=MsG0780040445.01.T01
Chr7 CDS 77660946 77661130 77660946 ID=MsG0780040445.01.T01:cds;Parent=MsG0780040445.01.T01
Chr7 CDS 77660038 77660142 77660038 ID=MsG0780040445.01.T01:cds;Parent=MsG0780040445.01.T01
Chr7 CDS 77659707 77659961 77659707 ID=MsG0780040445.01.T01:cds;Parent=MsG0780040445.01.T01
Chr7 CDS 77659450 77659617 77659450 ID=MsG0780040445.01.T01:cds;Parent=MsG0780040445.01.T01
Gene Sequence

>MsG0780040445.01.T01

ATGTGGGCTCTTCGTCGAGCTTCATTACCTCTCAGGAATAAAGGTCTTAATGTTAGGGTTTCATCTGTGAAATTATTGCCAAATACTTGTGTTGAAGATGAGGCTGGACTTTTTTATTCTCCCAAAATGATTAGGGTTTTCTTCGGAAGCTGGTGCGAAACTACGAAAGAGGAGGATGATGATTTGGAGGAAGGTTTTTCAGAGCTGGAGACGCCACTGGCTGGAGTTACCGCTATCGCTGATGTGGATGAGGTTTCAACGGGGAAGAGGTCGAGTAGAAAGAGGGCTGATTCGGAACTTTTTAAAGCTATTATGAATGGTACCCGGGCCTACTATTTATACGGCTTTGGAAAGTGGGTTGAAGATGGGAAAGAATTGAGCAGAGAGGAGATTTCGCTGACTATGCTCTCAGAGTGGCTCGAGTCAAAGAAGCATCTTGAATTCGTTGAAAGGGATTATGCTTCCCAACTTGATTTAATTGCCAAATTGCATGGCCTACATAAGGCAGAAAACAATTTGAAGAAAGCAGAGGAAATTTTTAATAAAATGAAGGATTTAGAGTTTCCTCTTACACCATTTGCGTGTAATCAGTTGCTCCTTCTGTATAAGAGGACTGACAAAAAGAAAATAGCTGATGTGTTATTGCTGATGGAACAAGAGAATGTCAAACCTTCTCCTCTGACTTTTAAGATCTTAATAGATGTAAAAGGCCAGTCCAATGATATTGATGGAATGGATCAAATTGTTGATCAAATGAGAGCTGAGGAGATGGAAGGTGAAAACTTGAAGGAGAATCGGTGGGTCTGTCGACTTTTGCTTGCTCTCTATGCAAAGTTGGGAATGGCCGATGAAGTGGGAAGAGTTTGGAAGGTCTGTGAGACACGCCCTTCAGTTGAGGATTGTGTAGCTGCAATTGAAGCCTGGGGAAGTTGA

Protein sequence

>MsG0780040445.01.T01

MWALRRASLPLRNKGLNVRVSSVKLLPNTCVEDEAGLFYSPKMIRVFFGSWCETTKEEDDDLEEGFSELETPLAGVTAIADVDEVSTGKRSSRKRADSELFKAIMNGTRAYYLYGFGKWVEDGKELSREEISLTMLSEWLESKKHLEFVERDYASQLDLIAKLHGLHKAENNLKKAEEIFNKMKDLEFPLTPFACNQLLLLYKRTDKKKIADVLLLMEQENVKPSPLTFKILIDVKGQSNDIDGMDQIVDQMRAEEMEGENLKENRWVCRLLLALYAKLGMADEVGRVWKVCETRPSVEDCVAAIEAWGS*