Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004780.01.T01 | RHN81020.1 | 97.292 | 480 | 13 | 0 | 1 | 480 | 60 | 539 | 0 | 972 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004780.01.T01 | Q9FZ24 | 43.16 | 519 | 245 | 6 | 1 | 469 | 1 | 519 | 2.20E-144 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004780.01.T01 | A0A396JRT9 | 97.292 | 480 | 13 | 0 | 1 | 480 | 60 | 539 | 0.0 | 972 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001141.01 | MsG0180004780.01 | 0.848112 | 7.544567e-60 | 1.369817e-56 |
| MsG0180001213.01 | MsG0180004780.01 | 0.827961 | 1.171532e-54 | 1.148433e-51 |
| MsG0180002458.01 | MsG0180004780.01 | 0.856970 | 2.243205e-62 | 5.449594e-59 |
| MsG0180003073.01 | MsG0180004780.01 | 0.826572 | 2.521013e-54 | 2.373181e-51 |
| MsG0180003097.01 | MsG0180004780.01 | 0.847558 | 1.072013e-59 | 1.912824e-56 |
| MsG0180003854.01 | MsG0180004780.01 | 0.860736 | 1.677106e-63 | 4.631601e-60 |
| MsG0180004151.01 | MsG0180004780.01 | 0.804217 | 2.401691e-49 | 1.231260e-46 |
| MsG0180004780.01 | MsG0180005957.01 | 0.858991 | 5.632906e-63 | 1.464920e-59 |
| MsG0180004780.01 | MsG0180006143.01 | 0.860103 | 2.607836e-63 | 7.047791e-60 |
| MsG0180004780.01 | MsG0280006406.01 | 0.824260 | 8.886463e-54 | 7.830855e-51 |
| MsG0180004780.01 | MsG0280007222.01 | 0.839913 | 1.192363e-57 | 1.671001e-54 |
| MsG0180004780.01 | MsG0280008037.01 | 0.826871 | 2.138744e-54 | 2.030737e-51 |
| MsG0180004780.01 | MsG0280008613.01 | 0.808847 | 2.532810e-50 | 1.463747e-47 |
| MsG0180004780.01 | MsG0280009230.01 | 0.823743 | 1.175198e-53 | 1.020783e-50 |
| MsG0180004780.01 | MsG0280009716.01 | 0.861366 | 1.079433e-63 | 3.047321e-60 |
| MsG0180004780.01 | MsG0280011261.01 | 0.802261 | 6.101133e-49 | 2.975192e-46 |
| MsG0180004780.01 | MsG0380011659.01 | 0.811944 | 5.433600e-51 | 3.408846e-48 |
| MsG0180004780.01 | MsG0380011704.01 | 0.802119 | 6.527286e-49 | 3.171386e-46 |
| MsG0180004780.01 | MsG0380012310.01 | 0.831325 | 1.779187e-55 | 1.924251e-52 |
| MsG0180004780.01 | MsG0380012566.01 | 0.867179 | 1.656233e-65 | 5.728641e-62 |
| MsG0180004780.01 | MsG0380013178.01 | 0.815996 | 6.943998e-52 | 4.861215e-49 |
| MsG0180004780.01 | MsG0380014276.01 | 0.848031 | 7.938723e-60 | 1.437683e-56 |
| MsG0180004780.01 | MsG0380014548.01 | 0.832989 | 6.897498e-56 | 7.837885e-53 |
| MsG0180004780.01 | MsG0380014577.01 | 0.872566 | 2.881743e-67 | 1.211752e-63 |
| MsG0180004780.01 | MsG0380015164.01 | 0.811901 | 5.551576e-51 | 3.478739e-48 |
| MsG0180004780.01 | MsG0380015964.01 | 0.818738 | 1.675968e-52 | 1.264942e-49 |
| MsG0180004780.01 | MsG0380015965.01 | 0.816375 | 5.712473e-52 | 4.040855e-49 |
| MsG0180004780.01 | MsG0380016906.01 | 0.848790 | 4.895406e-60 | 9.087594e-57 |
| MsG0180004780.01 | MsG0380017680.01 | 0.817732 | 2.830814e-52 | 2.078301e-49 |
| MsG0180004780.01 | MsG0380017866.01 | 0.821513 | 3.880008e-53 | 3.163057e-50 |
| MsG0180004780.01 | MsG0480018163.01 | 0.806507 | 7.955555e-50 | 4.325630e-47 |
| MsG0180004780.01 | MsG0480019373.01 | 0.856201 | 3.774641e-62 | 8.938016e-59 |
| MsG0180004780.01 | MsG0480021164.01 | 0.872836 | 2.342159e-67 | 9.943694e-64 |
| MsG0180004780.01 | MsG0480021904.01 | 0.846543 | 2.033164e-59 | 3.511511e-56 |
| MsG0180004780.01 | MsG0480021994.01 | 0.837574 | 4.797332e-57 | 6.257846e-54 |
| MsG0180004780.01 | MsG0480022222.01 | 0.828462 | 8.872884e-55 | 8.825674e-52 |
| MsG0180004780.01 | MsG0480022851.01 | 0.802991 | 4.314406e-49 | 2.143270e-46 |
| MsG0180004780.01 | MsG0480023174.01 | 0.877369 | 6.641671e-69 | 3.331506e-65 |
| MsG0180004780.01 | MsG0480023744.01 | 0.820765 | 5.771141e-53 | 4.608043e-50 |
| MsG0180004780.01 | MsG0480023747.01 | 0.800653 | 1.303118e-48 | 6.100893e-46 |
| MsG0180004780.01 | MsG0580024165.01 | 0.812350 | 4.432228e-51 | 2.811507e-48 |
| MsG0180004780.01 | MsG0580024390.01 | 0.844098 | 9.326738e-59 | 1.489880e-55 |
| MsG0180004780.01 | MsG0580024510.01 | 0.838489 | 2.790222e-57 | 3.742963e-54 |
| MsG0180004780.01 | MsG0580024512.01 | 0.855632 | 5.538702e-62 | 1.286973e-58 |
| MsG0180004780.01 | MsG0580024874.01 | 0.851051 | 1.141663e-60 | 2.281674e-57 |
| MsG0180004780.01 | MsG0580024974.01 | 0.816989 | 4.161115e-52 | 2.993532e-49 |
| MsG0180004780.01 | MsG0580025089.01 | 0.858206 | 9.659922e-63 | 2.446186e-59 |
| MsG0180004780.01 | MsG0580025400.01 | 0.811553 | 6.610636e-51 | 4.104468e-48 |
| MsG0180004780.01 | MsG0580025421.01 | 0.859480 | 4.018265e-63 | 1.062767e-59 |
| MsG0180004780.01 | MsG0580025448.01 | 0.808764 | 2.638473e-50 | 1.521461e-47 |
| MsG0180004780.01 | MsG0580029355.01 | 0.812900 | 3.358984e-51 | 2.161842e-48 |
| MsG0180004780.01 | MsG0680030285.01 | 0.838908 | 2.173669e-57 | 2.953278e-54 |
| MsG0180004780.01 | MsG0680030320.01 | 0.801522 | 8.652646e-49 | 4.141040e-46 |
| MsG0180004780.01 | MsG0680030351.01 | 0.816797 | 4.595453e-52 | 3.288269e-49 |
| MsG0180004780.01 | MsG0680030414.01 | 0.829105 | 6.199512e-55 | 6.283122e-52 |
| MsG0180004780.01 | MsG0680031700.01 | 0.813274 | 2.780709e-51 | 1.807809e-48 |
| MsG0180004780.01 | MsG0680031822.01 | 0.830410 | 2.983380e-55 | 3.140687e-52 |
| MsG0180004780.01 | MsG0680032430.01 | 0.811207 | 7.857117e-51 | 4.834110e-48 |
| MsG0180004780.01 | MsG0680035278.01 | 0.838086 | 3.543729e-57 | 4.695380e-54 |
| MsG0180004780.01 | MsG0780036705.01 | 0.848211 | 7.081440e-60 | 1.289917e-56 |
| MsG0180004780.01 | MsG0780036813.01 | 0.809976 | 1.449735e-50 | 8.633891e-48 |
| MsG0180004780.01 | MsG0780037512.01 | 0.807280 | 5.459351e-50 | 3.028393e-47 |
| MsG0180004780.01 | MsG0780038906.01 | 0.803966 | 2.708093e-49 | 1.379507e-46 |
| MsG0180004780.01 | MsG0780039258.01 | 0.807149 | 5.819769e-50 | 3.217190e-47 |
| MsG0180004780.01 | MsG0780040445.01 | 0.869717 | 2.511470e-66 | 9.518474e-63 |
| MsG0180004780.01 | MsG0780041294.01 | 0.817199 | 3.732646e-52 | 2.700539e-49 |
| MsG0180004780.01 | MsG0780041345.01 | 0.816840 | 4.494893e-52 | 3.220266e-49 |
| MsG0180004780.01 | MsG0780041555.01 | 0.880804 | 4.057193e-70 | 2.319874e-66 |
| MsG0180004780.01 | MsG0880042294.01 | 0.841848 | 3.705368e-58 | 5.514714e-55 |
| MsG0180004780.01 | MsG0880042314.01 | 0.871885 | 4.859873e-67 | 1.991978e-63 |
| MsG0180004780.01 | MsG0880042404.01 | 0.870839 | 1.077576e-66 | 4.253019e-63 |
| MsG0180004780.01 | MsG0880042663.01 | 0.815079 | 1.110955e-51 | 7.584260e-49 |
| MsG0180004780.01 | MsG0880045133.01 | 0.826718 | 2.326605e-54 | 2.199317e-51 |
| MsG0180004780.01 | MsG0880046285.01 | 0.846151 | 2.599944e-59 | 4.433292e-56 |
| MsG0180004780.01 | MsG0880046321.01 | 0.889674 | 1.959895e-73 | 1.596768e-69 |
| MsG0180004780.01 | MsG0880046328.01 | 0.832329 | 1.005964e-55 | 1.120632e-52 |
| MsG0180004780.01 | MsG0880046575.01 | 0.800958 | 1.128642e-48 | 5.325387e-46 |
| MsG0180004780.01 | MsG0880046647.01 | 0.821581 | 3.742574e-53 | 3.056890e-50 |
| MsG0180004780.01 | MsG0880047019.01 | 0.825462 | 4.627011e-54 | 4.220026e-51 |
| MsG0180004780.01 | MsG0880047116.01 | 0.810628 | 1.048537e-50 | 6.352734e-48 |
| MsG0180004780.01 | MsG0880047286.01 | 0.842775 | 2.103985e-58 | 3.223672e-55 |
| MsG0180004780.01 | MsG0880047448.01 | 0.801470 | 8.871088e-49 | 4.239856e-46 |
| MsG0180004780.01 | MsG0880047608.01 | 0.802440 | 5.603878e-49 | 2.745249e-46 |
| MsG0180004780.01 | MsG0880047647.01 | 0.806695 | 7.258379e-50 | 3.965624e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004780.01 | MsG0880045294.01 | PPI |
| MsG0380017889.01 | MsG0180004780.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004780.01.T01 | MTR_1g086820 | 97.292 | 480 | 13 | 0 | 1 | 480 | 1 | 480 | 0.0 | 972 |
| MsG0180004780.01.T01 | MTR_8g069570 | 38.377 | 456 | 265 | 7 | 40 | 480 | 29 | 483 | 2.19e-93 | 292 |
| MsG0180004780.01.T01 | MTR_2g013450 | 30.176 | 454 | 303 | 8 | 29 | 471 | 26 | 476 | 2.33e-62 | 211 |
| MsG0180004780.01.T01 | MTR_8g007375 | 32.884 | 371 | 246 | 3 | 93 | 460 | 7 | 377 | 1.84e-58 | 198 |
| MsG0180004780.01.T01 | MTR_1g072300 | 30.839 | 441 | 289 | 9 | 20 | 450 | 25 | 459 | 2.72e-56 | 195 |
| MsG0180004780.01.T01 | MTR_2g047855 | 30.189 | 424 | 280 | 8 | 13 | 430 | 19 | 432 | 4.18e-56 | 194 |
| MsG0180004780.01.T01 | MTR_8g465890 | 30.425 | 424 | 281 | 6 | 14 | 431 | 16 | 431 | 3.16e-55 | 192 |
| MsG0180004780.01.T01 | MTR_3g099753 | 29.252 | 441 | 295 | 8 | 20 | 450 | 26 | 459 | 9.37e-51 | 180 |
| MsG0180004780.01.T01 | MTR_3g099753 | 29.252 | 441 | 295 | 8 | 20 | 450 | 50 | 483 | 1.68e-50 | 180 |
| MsG0180004780.01.T01 | MTR_8g059115 | 28.696 | 345 | 244 | 2 | 100 | 442 | 13 | 357 | 4.35e-47 | 168 |
| MsG0180004780.01.T01 | MTR_2g090290 | 27.381 | 420 | 255 | 9 | 51 | 441 | 52 | 450 | 7.32e-42 | 155 |
| MsG0180004780.01.T01 | MTR_1g022400 | 30.241 | 291 | 199 | 4 | 46 | 332 | 69 | 359 | 2.14e-41 | 152 |
| MsG0180004780.01.T01 | MTR_8g031520 | 37.129 | 202 | 123 | 3 | 27 | 224 | 99 | 300 | 2.75e-31 | 122 |
| MsG0180004780.01.T01 | MTR_7g089770 | 23.810 | 399 | 286 | 12 | 38 | 430 | 163 | 549 | 2.21e-24 | 107 |
| MsG0180004780.01.T01 | MTR_1g050750 | 22.931 | 423 | 306 | 12 | 29 | 445 | 90 | 498 | 2.78e-22 | 100 |
| MsG0180004780.01.T01 | MTR_2g096880 | 23.197 | 319 | 241 | 4 | 17 | 333 | 30 | 346 | 8.32e-18 | 86.3 |
| MsG0180004780.01.T01 | MTR_8g098755 | 22.884 | 319 | 234 | 7 | 82 | 392 | 334 | 648 | 2.26e-12 | 69.7 |
| MsG0180004780.01.T01 | MTR_7g017530 | 29.213 | 178 | 122 | 3 | 130 | 304 | 283 | 459 | 1.58e-11 | 67.4 |
| MsG0180004780.01.T01 | MTR_8g080940 | 22.812 | 320 | 223 | 8 | 53 | 359 | 520 | 828 | 6.07e-11 | 65.5 |
| MsG0180004780.01.T01 | MTR_8g080940 | 22.812 | 320 | 223 | 8 | 53 | 359 | 722 | 1030 | 9.74e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004780.01.T01 | AT1G02370 | 43.160 | 519 | 245 | 6 | 1 | 469 | 1 | 519 | 2.25e-145 | 427 |
| MsG0180004780.01.T01 | AT4G01990 | 43.542 | 480 | 249 | 8 | 11 | 469 | 6 | 484 | 2.50e-128 | 382 |
| MsG0180004780.01.T01 | AT1G60770 | 37.069 | 464 | 271 | 10 | 33 | 480 | 25 | 483 | 1.13e-89 | 282 |
| MsG0180004780.01.T01 | AT1G02150 | 34.259 | 432 | 279 | 4 | 33 | 459 | 69 | 500 | 1.33e-76 | 249 |
| MsG0180004780.01.T01 | AT4G21705 | 31.818 | 418 | 281 | 4 | 29 | 442 | 23 | 440 | 1.46e-68 | 227 |
| MsG0180004780.01.T01 | AT2G20710 | 29.540 | 413 | 284 | 5 | 32 | 441 | 39 | 447 | 1.15e-57 | 198 |
| MsG0180004780.01.T01 | AT4G02820 | 29.895 | 475 | 305 | 9 | 8 | 470 | 41 | 499 | 4.33e-55 | 192 |
| MsG0180004780.01.T01 | AT5G27460 | 29.070 | 430 | 290 | 6 | 12 | 431 | 21 | 445 | 5.80e-53 | 186 |
| MsG0180004780.01.T01 | AT5G09450 | 31.056 | 322 | 216 | 5 | 25 | 340 | 49 | 370 | 2.66e-48 | 171 |
| MsG0180004780.01.T01 | AT2G20710 | 29.942 | 344 | 235 | 4 | 100 | 441 | 13 | 352 | 5.67e-47 | 167 |
| MsG0180004780.01.T01 | AT1G28020 | 28.267 | 329 | 231 | 5 | 36 | 359 | 41 | 369 | 3.99e-32 | 129 |
| MsG0180004780.01.T01 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| MsG0180004780.01.T01 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| MsG0180004780.01.T01 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| MsG0180004780.01.T01 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| MsG0180004780.01.T01 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| MsG0180004780.01.T01 | AT1G15480 | 25.205 | 365 | 261 | 9 | 43 | 402 | 138 | 495 | 3.97e-23 | 103 |
| MsG0180004780.01.T01 | AT3G15590 | 29.200 | 250 | 173 | 4 | 46 | 293 | 156 | 403 | 1.31e-22 | 101 |
| MsG0180004780.01.T01 | AT3G15590 | 29.200 | 250 | 173 | 4 | 46 | 293 | 156 | 403 | 1.31e-22 | 101 |
| MsG0180004780.01.T01 | AT1G07590 | 24.633 | 341 | 251 | 5 | 27 | 365 | 64 | 400 | 2.41e-19 | 91.3 |
| MsG0180004780.01.T01 | AT3G11380 | 26.780 | 295 | 180 | 6 | 66 | 355 | 78 | 341 | 8.44e-18 | 86.7 |
| MsG0180004780.01.T01 | AT3G11380 | 34.722 | 144 | 90 | 4 | 57 | 196 | 372 | 515 | 4.58e-12 | 68.6 |
| MsG0180004780.01.T01 | AT1G28000 | 24.567 | 289 | 210 | 6 | 13 | 293 | 13 | 301 | 1.29e-15 | 79.0 |
| MsG0180004780.01.T01 | AT5G21222 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| MsG0180004780.01.T01 | AT5G21222 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| MsG0180004780.01.T01 | AT5G21222 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| MsG0180004780.01.T01 | AT5G21222 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| MsG0180004780.01.T01 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.35e-11 | 65.5 |
| MsG0180004780.01.T01 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.35e-11 | 65.5 |
| MsG0180004780.01.T01 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.35e-11 | 65.5 |
| MsG0180004780.01.T01 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.35e-11 | 65.5 |
| MsG0180004780.01.T01 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.35e-11 | 65.5 |
Find 116 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGGTTTGCCTTCTTATT+TGG | 0.179522 | 1:+82704553 | None:intergenic |
| GGGCATAATAAAATTGTTTA+AGG | 0.218164 | 1:-82702821 | MsG0180004780.01.T01:CDS |
| AATTACGGCCGTTTGATTTC+CGG | 0.228375 | 1:-82704628 | MsG0180004780.01.T01:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.262779 | 1:-82703327 | MsG0180004780.01.T01:CDS |
| ATGAGTTAAGCAAGATTCTT+AGG | 0.291614 | 1:-82702486 | MsG0180004780.01.T01:CDS |
| GGCATGTTAGTTATGATTCT+AGG | 0.296691 | 1:-82702786 | MsG0180004780.01.T01:CDS |
| CCATATCATTAAGCCTTCTA+AGG | 0.308417 | 1:+82702845 | None:intergenic |
| TTATGCTTTCTAACCTTAGA+AGG | 0.314226 | 1:-82702858 | MsG0180004780.01.T01:CDS |
| CTTTCCCTTCGATTATATAC+TGG | 0.317101 | 1:+82704476 | None:intergenic |
| GCTGCAGAGGACCTTTCTTT+AGG | 0.319713 | 1:-82702681 | MsG0180004780.01.T01:CDS |
| AGGACCTTTCTTTAGGATTC+GGG | 0.341722 | 1:-82702674 | MsG0180004780.01.T01:CDS |
| GAGGACCTTTCTTTAGGATT+CGG | 0.351526 | 1:-82702675 | MsG0180004780.01.T01:CDS |
| TAGGATTCGGGAAATGTTCA+TGG | 0.370256 | 1:-82702662 | MsG0180004780.01.T01:CDS |
| CCTTAGAAGGCTTAATGATA+TGG | 0.371817 | 1:-82702845 | MsG0180004780.01.T01:CDS |
| TTCTTGCTGAGCCTTTATGC+TGG | 0.387794 | 1:-82702961 | MsG0180004780.01.T01:CDS |
| CATATACATAGACATCAAAT+TGG | 0.389303 | 1:+82703281 | None:intergenic |
| TTTATTGGAGAAAGGTCAAT+TGG | 0.391224 | 1:-82702635 | MsG0180004780.01.T01:CDS |
| GGAAGCTGTGTCGGTCTTTG+AGG | 0.399258 | 1:-82702716 | MsG0180004780.01.T01:CDS |
| GTTGGTTGGTGTTGCAGTGC+AGG | 0.407651 | 1:-82702764 | MsG0180004780.01.T01:CDS |
| GTTACAAATTCTCGTGGGCT+TGG | 0.417988 | 1:+82702365 | None:intergenic |
| GAAGAAGAAACAGATCTTGA+TGG | 0.427741 | 1:-82702514 | MsG0180004780.01.T01:CDS |
| AATAAAATTGTTTAAGGAGT+GGG | 0.433563 | 1:-82702815 | MsG0180004780.01.T01:CDS |
| TGTTTAAGGAGTGGGAATCT+AGG | 0.433657 | 1:-82702807 | MsG0180004780.01.T01:CDS |
| TGGTGCTATGAGCCACTTAG+AGG | 0.441022 | 1:-82702611 | MsG0180004780.01.T01:CDS |
| CATTACCAGTCCCAGCATAA+AGG | 0.447077 | 1:+82702950 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.448455 | 1:-82703232 | MsG0180004780.01.T01:CDS |
| TCTTGCTGAGCCTTTATGCT+GGG | 0.452519 | 1:-82702960 | MsG0180004780.01.T01:CDS |
| GATAGCTCCGATTGGTCACC+GGG | 0.462784 | 1:+82702884 | None:intergenic |
| CATAAAGGCTCAGCAAGAAA+TGG | 0.465952 | 1:+82702965 | None:intergenic |
| TTAAAGAGGTTTATAGAGTG+TGG | 0.469721 | 1:-82702927 | MsG0180004780.01.T01:CDS |
| ATTTGATGTCTATGTATATG+AGG | 0.470560 | 1:-82703278 | MsG0180004780.01.T01:CDS |
| CGTCTGCGACACGGTTCCTC+CGG | 0.470565 | 1:+82704504 | None:intergenic |
| TTTCTAGGTCGGCTAGTCTT+CGG | 0.471475 | 1:+82704530 | None:intergenic |
| GCACTTACAGCTTGTGGTGA+AGG | 0.473435 | 1:+82702553 | None:intergenic |
| TGGTATTCATACAGTATTGA+AGG | 0.474569 | 1:-82702404 | MsG0180004780.01.T01:CDS |
| TATGTGTACTTGTTCTTAGC+AGG | 0.476882 | 1:+82703408 | None:intergenic |
| GTTTGATTTCCGGCGGAGGA+AGG | 0.482051 | 1:-82704618 | MsG0180004780.01.T01:CDS |
| AGAGACTCTGAGATGAATTA+CGG | 0.482119 | 1:-82704643 | None:intergenic |
| TAAAGAGGTTTATAGAGTGT+GGG | 0.486756 | 1:-82702926 | MsG0180004780.01.T01:CDS |
| CTGAGCCTTTATGCTGGGAC+TGG | 0.488058 | 1:-82702955 | MsG0180004780.01.T01:CDS |
| AGTTATGATTCTAGGTTGGT+TGG | 0.491947 | 1:-82702778 | MsG0180004780.01.T01:CDS |
| ATAATCGAAGGGAAAGCCTT+AGG | 0.492451 | 1:-82704469 | MsG0180004780.01.T01:CDS |
| TTCAACCACTCCTTTCACTT+TGG | 0.493231 | 1:+82703461 | None:intergenic |
| TACGATACTTTCGAAGCTCC+TGG | 0.493561 | 1:+82704422 | None:intergenic |
| CACCGGGGTGATCTTCTTGA+GGG | 0.494822 | 1:+82702900 | None:intergenic |
| TGTGCTGCTTTGAATGACCT+TGG | 0.495240 | 1:-82703159 | MsG0180004780.01.T01:CDS |
| ATGAATACCAGGAGATGATT+CGG | 0.497054 | 1:+82702417 | None:intergenic |
| GGCCGTTTGATTTCCGGCGG+AGG | 0.498441 | 1:-82704622 | MsG0180004780.01.T01:CDS |
| TCGGAGAAGCCTTCCTCCGC+CGG | 0.500205 | 1:+82704609 | None:intergenic |
| AGATCACCCCGGTGACCAAT+CGG | 0.504230 | 1:-82702891 | MsG0180004780.01.T01:CDS |
| TGAACTCGAGAGATGCGTCC+AGG | 0.504375 | 1:-82704440 | MsG0180004780.01.T01:CDS |
| GCTGCTATCTATATAAAAGC+TGG | 0.505469 | 1:-82703060 | MsG0180004780.01.T01:CDS |
| TTCCTCCGCCGGAAATCAAA+CGG | 0.507328 | 1:+82704620 | None:intergenic |
| GGTCGGCTAGTCTTCGGTAA+AGG | 0.515798 | 1:+82704536 | None:intergenic |
| TGAGGTTGAACGTGTTTATG+AGG | 0.516026 | 1:-82703136 | MsG0180004780.01.T01:CDS |
| TGTTAGTTATGATTCTAGGT+TGG | 0.519722 | 1:-82702782 | MsG0180004780.01.T01:CDS |
| ACGACTATGCACGGCTGCGA+CGG | 0.522141 | 1:-82704587 | MsG0180004780.01.T01:CDS |
| AAGATGAAGACAAAATTGAC+TGG | 0.525053 | 1:-82703101 | MsG0180004780.01.T01:CDS |
| ACTATGCACGGCTGCGACGG+CGG | 0.530582 | 1:-82704584 | MsG0180004780.01.T01:CDS |
| TACTTGTTCTTAGCAGGAGG+AGG | 0.531968 | 1:+82703414 | None:intergenic |
| TGGGACTGGTAATGTTAAAG+AGG | 0.532622 | 1:-82702941 | MsG0180004780.01.T01:CDS |
| AGATAGCTCCGATTGGTCAC+CGG | 0.533726 | 1:+82702883 | None:intergenic |
| ATTTCCCGAATCCTAAAGAA+AGG | 0.537745 | 1:+82702670 | None:intergenic |
| TGCTTTGAATGACCTTGGTG+AGG | 0.538207 | 1:-82703154 | MsG0180004780.01.T01:CDS |
| TCACCGGGGTGATCTTCTTG+AGG | 0.539174 | 1:+82702899 | None:intergenic |
| TTGGAGAAAGGTCAATTGGA+TGG | 0.539563 | 1:-82702631 | MsG0180004780.01.T01:CDS |
| AGAAAAGCACTTACAGCTTG+TGG | 0.542366 | 1:+82702547 | None:intergenic |
| GGCTGAGCTTCCAAATAAGA+AGG | 0.546791 | 1:-82704563 | MsG0180004780.01.T01:CDS |
| AAAGAGGTTTATAGAGTGTG+GGG | 0.547043 | 1:-82702925 | MsG0180004780.01.T01:CDS |
| GAAGCTCTCAAGAGCTGCAG+AGG | 0.547848 | 1:-82702694 | MsG0180004780.01.T01:CDS |
| GATCTTGTGTCCAAAGTGAA+AGG | 0.549809 | 1:-82703471 | MsG0180004780.01.T01:CDS |
| ACTGCATCCGAATCATCTCC+TGG | 0.552993 | 1:-82702424 | MsG0180004780.01.T01:CDS |
| AGAAATGGTAAGTTTCGCGT+TGG | 0.553517 | 1:+82702980 | None:intergenic |
| TTACAGCTTGTGGTGAAGGT+TGG | 0.556374 | 1:+82702557 | None:intergenic |
| TAATAAAATTGTTTAAGGAG+TGG | 0.559489 | 1:-82702816 | MsG0180004780.01.T01:CDS |
| TTCAATACTGTATGAATACC+AGG | 0.559830 | 1:+82702406 | None:intergenic |
| TCCCAAGTTACAAATTCTCG+TGG | 0.560694 | 1:+82702359 | None:intergenic |
| TTGAACCAGTATATAATCGA+AGG | 0.561352 | 1:-82704481 | MsG0180004780.01.T01:CDS |
| ATTGGTTGCAGATAATGGAA+TGG | 0.561950 | 1:-82703545 | MsG0180004780.01.T01:intron |
| AGCTGAGTTGATGCTTAAGA+AGG | 0.568467 | 1:-82703025 | MsG0180004780.01.T01:CDS |
| TGGTAAGTTTCGCGTTGGCG+CGG | 0.569478 | 1:+82702985 | None:intergenic |
| CTGAAAGTGCGGCCTCTAAG+TGG | 0.571070 | 1:+82702599 | None:intergenic |
| ATGTCTATGTATATGAGGCT+AGG | 0.571867 | 1:-82703273 | MsG0180004780.01.T01:CDS |
| TAGATTCCATCATGCATTCG+AGG | 0.573744 | 1:-82704401 | MsG0180004780.01.T01:intron |
| CATGGACAAGGAAGCTGTGT+CGG | 0.574022 | 1:-82702725 | MsG0180004780.01.T01:CDS |
| CTGGTTCAACGTCTGCGACA+CGG | 0.577943 | 1:+82704495 | None:intergenic |
| ACCGTCGAAAGTTCCTCAGT+TGG | 0.578763 | 1:-82703247 | MsG0180004780.01.T01:CDS |
| TAGAAGGCTTAATGATATGG+AGG | 0.581977 | 1:-82702842 | MsG0180004780.01.T01:CDS |
| GAGGCCGCACTTTCAGAAGT+CGG | 0.583270 | 1:-82702592 | MsG0180004780.01.T01:CDS |
| ACCAACTGAGGAACTTTCGA+CGG | 0.585028 | 1:+82703246 | None:intergenic |
| CATAATAAGATAGCTCCGAT+TGG | 0.585163 | 1:+82702876 | None:intergenic |
| GCGATACCTCGAATGCATGA+TGG | 0.585983 | 1:+82704395 | None:intergenic |
| GTGTACTTGTTCTTAGCAGG+AGG | 0.589015 | 1:+82703411 | None:intergenic |
| TGGTTAATGTTATGAAGGAG+AGG | 0.593769 | 1:-82703227 | MsG0180004780.01.T01:CDS |
| TTCATAACATTAACCAACTG+AGG | 0.600464 | 1:+82703234 | None:intergenic |
| AGAAGGCTTAATGATATGGA+GGG | 0.604451 | 1:-82702841 | MsG0180004780.01.T01:CDS |
| GCTAAGAACAAGTACACATA+CGG | 0.606065 | 1:-82703405 | MsG0180004780.01.T01:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.614146 | 1:-82703379 | MsG0180004780.01.T01:CDS |
| TACGGCCGTTTGATTTCCGG+CGG | 0.616646 | 1:-82704625 | MsG0180004780.01.T01:CDS |
| GGCTTACTTGAGTCAAAACA+TGG | 0.616784 | 1:-82702743 | MsG0180004780.01.T01:CDS |
| CCCAAGTTACAAATTCTCGT+GGG | 0.622015 | 1:+82702360 | None:intergenic |
| CTTGAGTCAAAACATGGACA+AGG | 0.623542 | 1:-82702737 | MsG0180004780.01.T01:CDS |
| AAGAGGTTTATAGAGTGTGG+GGG | 0.627275 | 1:-82702924 | MsG0180004780.01.T01:CDS |
| TGAACCAGTATATAATCGAA+GGG | 0.630767 | 1:-82704480 | MsG0180004780.01.T01:CDS |
| TCGCAGCCGTGCATAGTCGT+CGG | 0.630947 | 1:+82704590 | None:intergenic |
| CTAGCCGACCTAGAAAAGAC+CGG | 0.635101 | 1:-82704523 | MsG0180004780.01.T01:CDS |
| TGAGTTGATGCTTAAGAAGG+TGG | 0.644162 | 1:-82703022 | MsG0180004780.01.T01:CDS |
| TAATGGAATGGATGATGATG+AGG | 0.652324 | 1:-82703533 | MsG0180004780.01.T01:CDS |
| CAAGGAACTAATGCTAGACA+AGG | 0.652550 | 1:-82703361 | MsG0180004780.01.T01:CDS |
| GACCCTCAAGAAGATCACCC+CGG | 0.654594 | 1:-82702902 | MsG0180004780.01.T01:CDS |
| ATCGCCGACTTCTGAAAGTG+CGG | 0.674194 | 1:+82702588 | None:intergenic |
| GCTTCTCCGACGACTATGCA+CGG | 0.690136 | 1:-82704596 | MsG0180004780.01.T01:CDS |
| GCCGACCTAGAAAAGACCGG+AGG | 0.743237 | 1:-82704520 | MsG0180004780.01.T01:CDS |
| TGTGTCCAAAGTGAAAGGAG+TGG | 0.764655 | 1:-82703466 | MsG0180004780.01.T01:CDS |
| AAACACGTTCAACCTCACCA+AGG | 0.766259 | 1:+82703142 | None:intergenic |
| ATAGCTCCGATTGGTCACCG+GGG | 0.806286 | 1:+82702885 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATGATGTTTTGAT+TGG | - | Chr1:82703434-82703453 | MsG0180004780.01.T01:CDS | 15.0% |
| !! | AATAAAATTGTTTAAGGAGT+GGG | - | Chr1:82704182-82704201 | MsG0180004780.01.T01:intron | 20.0% |
| !! | TAATAAAATTGTTTAAGGAG+TGG | - | Chr1:82704181-82704200 | MsG0180004780.01.T01:intron | 20.0% |
| !! | TCAACATGAATCAAAATTTA+GGG | + | Chr1:82702650-82702669 | None:intergenic | 20.0% |
| !! | TTGTTAATAAATGAATCAAC+TGG | - | Chr1:82702901-82702920 | MsG0180004780.01.T01:CDS | 20.0% |
| ! | AAAATTAGTTAGAGTCGTTT+AGG | + | Chr1:82702747-82702766 | None:intergenic | 25.0% |
| ! | AAAGATTAACAAGTTCGATA+GGG | - | Chr1:82703288-82703307 | MsG0180004780.01.T01:CDS | 25.0% |
| ! | ACTAATTATGTTCTGTGTAA+TGG | - | Chr1:82702865-82702884 | MsG0180004780.01.T01:CDS | 25.0% |
| ! | ATTTGATGTCTATGTATATG+AGG | - | Chr1:82703719-82703738 | MsG0180004780.01.T01:intron | 25.0% |
| ! | CATATACATAGACATCAAAT+TGG | + | Chr1:82703719-82703738 | None:intergenic | 25.0% |
| ! | CTCAACATGAATCAAAATTT+AGG | + | Chr1:82702651-82702670 | None:intergenic | 25.0% |
| ! | GGGCATAATAAAATTGTTTA+AGG | - | Chr1:82704176-82704195 | MsG0180004780.01.T01:intron | 25.0% |
| ! | TAAAGATTAACAAGTTCGAT+AGG | - | Chr1:82703287-82703306 | MsG0180004780.01.T01:CDS | 25.0% |
| ! | TAGTATATGATAGAACACTA+TGG | - | Chr1:82703314-82703333 | MsG0180004780.01.T01:CDS | 25.0% |
| ! | TTATATAGTAGTCACAAGAT+CGG | - | Chr1:82702966-82702985 | MsG0180004780.01.T01:CDS | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | - | Chr1:82703670-82703689 | MsG0180004780.01.T01:intron | 25.0% |
| !! | AAATTTAGGGTGGAAAAAAT+TGG | + | Chr1:82702637-82702656 | None:intergenic | 25.0% |
| !! | CTGAATTTACATACATTTTG+TGG | - | Chr1:82703806-82703825 | MsG0180004780.01.T01:intron | 25.0% |
| !! | GAGGCAAATTAATTTTTCAT+GGG | - | Chr1:82703483-82703502 | MsG0180004780.01.T01:CDS | 25.0% |
| !! | TGAGGCAAATTAATTTTTCA+TGG | - | Chr1:82703482-82703501 | MsG0180004780.01.T01:CDS | 25.0% |
| !!! | AATGTTCATGGTGTTTTTAT+TGG | - | Chr1:82704347-82704366 | MsG0180004780.01.T01:intron | 25.0% |
| !!! | AGTAATGCAAGTTTTAATAG+AGG | + | Chr1:82704556-82704575 | None:intergenic | 25.0% |
| !!! | ATTGTCTCATTTTGATAAGA+TGG | - | Chr1:82703660-82703679 | MsG0180004780.01.T01:intron | 25.0% |
| !!! | TTTACCATCTTTTTTACGAT+AGG | + | Chr1:82703124-82703143 | None:intergenic | 25.0% |
| AAGATGAAGACAAAATTGAC+TGG | - | Chr1:82703896-82703915 | MsG0180004780.01.T01:intron | 30.0% | |
| ACATGAATCAAAATTTAGGG+TGG | + | Chr1:82702647-82702666 | None:intergenic | 30.0% | |
| ATGACAATATTAGAGAGAGT+TGG | - | Chr1:82703091-82703110 | MsG0180004780.01.T01:CDS | 30.0% | |
| ATGAGTTAAGCAAGATTCTT+AGG | - | Chr1:82704511-82704530 | MsG0180004780.01.T01:CDS | 30.0% | |
| TAAAGAGGTTTATAGAGTGT+GGG | - | Chr1:82704071-82704090 | MsG0180004780.01.T01:intron | 30.0% | |
| TAAAGGTTTGCCTTCTTATT+TGG | + | Chr1:82702447-82702466 | None:intergenic | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | - | Chr1:82703765-82703784 | MsG0180004780.01.T01:intron | 30.0% | |
| TGAACCAGTATATAATCGAA+GGG | - | Chr1:82702517-82702536 | MsG0180004780.01.T01:CDS | 30.0% | |
| TGACAATATTAGAGAGAGTT+GGG | - | Chr1:82703092-82703111 | MsG0180004780.01.T01:CDS | 30.0% | |
| TGATGATAAACTATGAAGCA+TGG | + | Chr1:82702825-82702844 | None:intergenic | 30.0% | |
| TGTTAGTTATGATTCTAGGT+TGG | - | Chr1:82704215-82704234 | MsG0180004780.01.T01:intron | 30.0% | |
| TTAAAGAGGTTTATAGAGTG+TGG | - | Chr1:82704070-82704089 | MsG0180004780.01.T01:intron | 30.0% | |
| TTATGCTTTCTAACCTTAGA+AGG | - | Chr1:82704139-82704158 | MsG0180004780.01.T01:intron | 30.0% | |
| TTCAATACTGTATGAATACC+AGG | + | Chr1:82704594-82704613 | None:intergenic | 30.0% | |
| TTCATAACATTAACCAACTG+AGG | + | Chr1:82703766-82703785 | None:intergenic | 30.0% | |
| TTGAACCAGTATATAATCGA+AGG | - | Chr1:82702516-82702535 | MsG0180004780.01.T01:CDS | 30.0% | |
| TTTATTGGAGAAAGGTCAAT+TGG | - | Chr1:82704362-82704381 | MsG0180004780.01.T01:intron | 30.0% | |
| ! | ACATACATTTTGTGGATGAA+TGG | - | Chr1:82703814-82703833 | MsG0180004780.01.T01:intron | 30.0% |
| ! | AGATGGTAAAAGTTTGACTT+AGG | - | Chr1:82703134-82703153 | MsG0180004780.01.T01:CDS | 30.0% |
| ! | CTTTTATATAGATAGCAGCA+AGG | + | Chr1:82703936-82703955 | None:intergenic | 30.0% |
| ! | TGGTATTCATACAGTATTGA+AGG | - | Chr1:82704593-82704612 | MsG0180004780.01.T01:CDS | 30.0% |
| !! | ATGGTGTTTTTATTGGAGAA+AGG | - | Chr1:82704354-82704373 | MsG0180004780.01.T01:intron | 30.0% |
| !! | TTTTGATTGGTTGCAGATAA+TGG | - | Chr1:82703447-82703466 | MsG0180004780.01.T01:CDS | 30.0% |
| !!! | AATTAGTTTTGCCTTGTCTA+TGG | + | Chr1:82702852-82702871 | None:intergenic | 30.0% |
| !!! | CGCTTATTTTATTCTCATGT+TGG | + | Chr1:82703018-82703037 | None:intergenic | 30.0% |
| AAAGAGGTTTATAGAGTGTG+GGG | - | Chr1:82704072-82704091 | MsG0180004780.01.T01:intron | 35.0% | |
| AGAAGGCTTAATGATATGGA+GGG | - | Chr1:82704156-82704175 | MsG0180004780.01.T01:intron | 35.0% | |
| AGCACCTATCGTAAAAAAGA+TGG | - | Chr1:82703117-82703136 | MsG0180004780.01.T01:CDS | 35.0% | |
| ATCATCACAATCCATAGACA+AGG | - | Chr1:82702838-82702857 | MsG0180004780.01.T01:CDS | 35.0% | |
| ATGAATACCAGGAGATGATT+CGG | + | Chr1:82704583-82704602 | None:intergenic | 35.0% | |
| ATGTCTATGTATATGAGGCT+AGG | - | Chr1:82703724-82703743 | MsG0180004780.01.T01:intron | 35.0% | |
| ATTTCCCGAATCCTAAAGAA+AGG | + | Chr1:82704330-82704349 | None:intergenic | 35.0% | |
| CATAATAAGATAGCTCCGAT+TGG | + | Chr1:82704124-82704143 | None:intergenic | 35.0% | |
| CCATATCATTAAGCCTTCTA+AGG | + | Chr1:82704155-82704174 | None:intergenic | 35.0% | |
| CCTTAGAAGGCTTAATGATA+TGG | - | Chr1:82704152-82704171 | MsG0180004780.01.T01:intron | 35.0% | |
| CTTTCCCTTCGATTATATAC+TGG | + | Chr1:82702524-82702543 | None:intergenic | 35.0% | |
| GAAGAAGAAACAGATCTTGA+TGG | - | Chr1:82704483-82704502 | MsG0180004780.01.T01:CDS | 35.0% | |
| GCTAAGAACAAGTACACATA+CGG | - | Chr1:82703592-82703611 | MsG0180004780.01.T01:intron | 35.0% | |
| GCTGCTATCTATATAAAAGC+TGG | - | Chr1:82703937-82703956 | MsG0180004780.01.T01:intron | 35.0% | |
| GGCATGTTAGTTATGATTCT+AGG | - | Chr1:82704211-82704230 | MsG0180004780.01.T01:intron | 35.0% | |
| TAGAAGGCTTAATGATATGG+AGG | - | Chr1:82704155-82704174 | MsG0180004780.01.T01:intron | 35.0% | |
| TATGTGTACTTGTTCTTAGC+AGG | + | Chr1:82703592-82703611 | None:intergenic | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | - | Chr1:82703618-82703637 | MsG0180004780.01.T01:intron | 35.0% | |
| TGGTTAATGTTATGAAGGAG+AGG | - | Chr1:82703770-82703789 | MsG0180004780.01.T01:intron | 35.0% | |
| ! | AAATGAATCAACTGGCTTAG+TGG | - | Chr1:82702909-82702928 | MsG0180004780.01.T01:CDS | 35.0% |
| ! | CAAGTCTTATCCCACTAATT+GGG | + | Chr1:82703364-82703383 | None:intergenic | 35.0% |
| ! | GACCTGTAGATTTTGTAGTA+CGG | - | Chr1:82703179-82703198 | MsG0180004780.01.T01:CDS | 35.0% |
| ! | TAATGGAATGGATGATGATG+AGG | - | Chr1:82703464-82703483 | MsG0180004780.01.T01:CDS | 35.0% |
| ! | TGGTAAAAGTTTGACTTAGG+TGG | - | Chr1:82703137-82703156 | MsG0180004780.01.T01:CDS | 35.0% |
| !! | AGTTATGATTCTAGGTTGGT+TGG | - | Chr1:82704219-82704238 | MsG0180004780.01.T01:intron | 35.0% |
| !! | ATTGGTTGCAGATAATGGAA+TGG | - | Chr1:82703452-82703471 | MsG0180004780.01.T01:CDS | 35.0% |
| AAGAGGTTTATAGAGTGTGG+GGG | - | Chr1:82704073-82704092 | MsG0180004780.01.T01:intron | 40.0% | |
| ACAAGATCGGTGATGTTGTA+TGG | - | Chr1:82702979-82702998 | MsG0180004780.01.T01:CDS | 40.0% | |
| AGAAATGGTAAGTTTCGCGT+TGG | + | Chr1:82704020-82704039 | None:intergenic | 40.0% | |
| ATAATCGAAGGGAAAGCCTT+AGG | - | Chr1:82702528-82702547 | MsG0180004780.01.T01:CDS | 40.0% | |
| CAAGGAACTAATGCTAGACA+AGG | - | Chr1:82703636-82703655 | MsG0180004780.01.T01:intron | 40.0% | |
| CATAAAGGCTCAGCAAGAAA+TGG | + | Chr1:82704035-82704054 | None:intergenic | 40.0% | |
| CCAATTAGTGGGATAAGACT+TGG | - | Chr1:82703362-82703381 | MsG0180004780.01.T01:CDS | 40.0% | |
| CTCCGTACTACAAAATCTAC+AGG | + | Chr1:82703184-82703203 | None:intergenic | 40.0% | |
| CTTATCCCACTAATTGGGAT+CGG | + | Chr1:82703359-82703378 | None:intergenic | 40.0% | |
| CTTGAGTCAAAACATGGACA+AGG | - | Chr1:82704260-82704279 | MsG0180004780.01.T01:intron | 40.0% | |
| GATCTTGTGTCCAAAGTGAA+AGG | - | Chr1:82703526-82703545 | MsG0180004780.01.T01:CDS | 40.0% | |
| GGCTTACTTGAGTCAAAACA+TGG | - | Chr1:82704254-82704273 | MsG0180004780.01.T01:intron | 40.0% | |
| TAGATTCCATCATGCATTCG+AGG | - | Chr1:82702596-82702615 | MsG0180004780.01.T01:CDS | 40.0% | |
| TAGGATTCGGGAAATGTTCA+TGG | - | Chr1:82704335-82704354 | MsG0180004780.01.T01:intron | 40.0% | |
| TGAGGTTGAACGTGTTTATG+AGG | - | Chr1:82703861-82703880 | MsG0180004780.01.T01:intron | 40.0% | |
| TGATTTGACTAACCTCCATC+TGG | + | Chr1:82703213-82703232 | None:intergenic | 40.0% | |
| TGTTTAAGGAGTGGGAATCT+AGG | - | Chr1:82704190-82704209 | MsG0180004780.01.T01:intron | 40.0% | |
| TTCAACCACTCCTTTCACTT+TGG | + | Chr1:82703539-82703558 | None:intergenic | 40.0% | |
| TTGGAGAAAGGTCAATTGGA+TGG | - | Chr1:82704366-82704385 | MsG0180004780.01.T01:intron | 40.0% | |
| ! | AAAGTACCACTCAAGCTGAA+GGG | - | Chr1:82702939-82702958 | MsG0180004780.01.T01:CDS | 40.0% |
| ! | AAGTTTGACTTAGGTGGTCT+AGG | - | Chr1:82703143-82703162 | MsG0180004780.01.T01:CDS | 40.0% |
| ! | AATTACGGCCGTTTGATTTC+CGG | - | Chr1:82702369-82702388 | MsG0180004780.01.T01:CDS | 40.0% |
| ! | CCAAGTCTTATCCCACTAAT+TGG | + | Chr1:82703365-82703384 | None:intergenic | 40.0% |
| ! | CTCGAGTTCATCTTTTCCTA+AGG | + | Chr1:82702547-82702566 | None:intergenic | 40.0% |
| ! | GAGGTTAGTCAAATCACTTG+AGG | - | Chr1:82703217-82703236 | MsG0180004780.01.T01:CDS | 40.0% |
| ! | TAAAGTACCACTCAAGCTGA+AGG | - | Chr1:82702938-82702957 | MsG0180004780.01.T01:CDS | 40.0% |
| ! | TGGGACTGGTAATGTTAAAG+AGG | - | Chr1:82704056-82704075 | MsG0180004780.01.T01:intron | 40.0% |
| !! | AGAAAAGCACTTACAGCTTG+TGG | + | Chr1:82704453-82704472 | None:intergenic | 40.0% |
| !! | AGCTGAGTTGATGCTTAAGA+AGG | - | Chr1:82703972-82703991 | MsG0180004780.01.T01:intron | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+GGG | - | Chr1:82704323-82704342 | MsG0180004780.01.T01:intron | 40.0% |
| !! | GAGGACCTTTCTTTAGGATT+CGG | - | Chr1:82704322-82704341 | MsG0180004780.01.T01:intron | 40.0% |
| !! | GTAACATCGACTCTGATTGA+AGG | - | Chr1:82702686-82702705 | MsG0180004780.01.T01:CDS | 40.0% |
| !! | TGAGTTGATGCTTAAGAAGG+TGG | - | Chr1:82703975-82703994 | MsG0180004780.01.T01:intron | 40.0% |
| AAACACGTTCAACCTCACCA+AGG | + | Chr1:82703858-82703877 | None:intergenic | 45.0% | |
| AATTGTCCCTTCAGCTTGAG+TGG | + | Chr1:82702948-82702967 | None:intergenic | 45.0% | |
| ACCAACTGAGGAACTTTCGA+CGG | + | Chr1:82703754-82703773 | None:intergenic | 45.0% | |
| ACTAATTGGGATCGGCTACA+TGG | + | Chr1:82703351-82703370 | None:intergenic | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | - | Chr1:82703049-82703068 | MsG0180004780.01.T01:CDS | 45.0% | |
| AGTCAAATCACTTGAGGCAG+AGG | - | Chr1:82703223-82703242 | MsG0180004780.01.T01:CDS | 45.0% | |
| ATGTAGCCGATCCCAATTAG+TGG | - | Chr1:82703350-82703369 | MsG0180004780.01.T01:CDS | 45.0% | |
| CATTACCAGTCCCAGCATAA+AGG | + | Chr1:82704050-82704069 | None:intergenic | 45.0% | |
| GGCTGAGCTTCCAAATAAGA+AGG | - | Chr1:82702434-82702453 | MsG0180004780.01.T01:CDS | 45.0% | |
| GTGTACTTGTTCTTAGCAGG+AGG | + | Chr1:82703589-82703608 | None:intergenic | 45.0% | |
| TACGATACTTTCGAAGCTCC+TGG | + | Chr1:82702578-82702597 | None:intergenic | 45.0% | |
| TACTTGTTCTTAGCAGGAGG+AGG | + | Chr1:82703586-82703605 | None:intergenic | 45.0% | |
| TCTTGCTGAGCCTTTATGCT+GGG | - | Chr1:82704037-82704056 | MsG0180004780.01.T01:intron | 45.0% | |
| TGTAGCCGATCCCAATTAGT+GGG | - | Chr1:82703351-82703370 | MsG0180004780.01.T01:CDS | 45.0% | |
| TGTGTCCAAAGTGAAAGGAG+TGG | - | Chr1:82703531-82703550 | MsG0180004780.01.T01:CDS | 45.0% | |
| TTACAGCTTGTGGTGAAGGT+TGG | + | Chr1:82704443-82704462 | None:intergenic | 45.0% | |
| TTCTTGCTGAGCCTTTATGC+TGG | - | Chr1:82704036-82704055 | MsG0180004780.01.T01:intron | 45.0% | |
| ! | AGTGGGATAAGACTTGGTTG+TGG | - | Chr1:82703368-82703387 | MsG0180004780.01.T01:CDS | 45.0% |
| ! | TGCTTTGAATGACCTTGGTG+AGG | - | Chr1:82703843-82703862 | MsG0180004780.01.T01:intron | 45.0% |
| !! | TGTGCTGCTTTGAATGACCT+TGG | - | Chr1:82703838-82703857 | MsG0180004780.01.T01:intron | 45.0% |
| !! | TTTCTAGGTCGGCTAGTCTT+CGG | + | Chr1:82702470-82702489 | None:intergenic | 45.0% |
| AAATAAGCGTAGCCGAGACG+AGG | - | Chr1:82703029-82703048 | MsG0180004780.01.T01:CDS | 50.0% | |
| ACCGTCGAAAGTTCCTCAGT+TGG | - | Chr1:82703750-82703769 | MsG0180004780.01.T01:intron | 50.0% | |
| ACTGCATCCGAATCATCTCC+TGG | - | Chr1:82704573-82704592 | MsG0180004780.01.T01:CDS | 50.0% | |
| AGTACGGAGAGTAGACCAGA+TGG | - | Chr1:82703195-82703214 | MsG0180004780.01.T01:CDS | 50.0% | |
| CATGGACAAGGAAGCTGTGT+CGG | - | Chr1:82704272-82704291 | MsG0180004780.01.T01:intron | 50.0% | |
| CCAACACAACATCCTCGTCT+CGG | + | Chr1:82703044-82703063 | None:intergenic | 50.0% | |
| CTAGCCGACCTAGAAAAGAC+CGG | - | Chr1:82702474-82702493 | MsG0180004780.01.T01:CDS | 50.0% | |
| GCACTTACAGCTTGTGGTGA+AGG | + | Chr1:82704447-82704466 | None:intergenic | 50.0% | |
| GCGATACCTCGAATGCATGA+TGG | + | Chr1:82702605-82702624 | None:intergenic | 50.0% | |
| GCTGCAGAGGACCTTTCTTT+AGG | - | Chr1:82704316-82704335 | MsG0180004780.01.T01:intron | 50.0% | |
| GTCGTTTAGGTGTCAGACAC+CGG | + | Chr1:82702734-82702753 | None:intergenic | 50.0% | |
| TTCCTCCGCCGGAAATCAAA+CGG | + | Chr1:82702380-82702399 | None:intergenic | 50.0% | |
| ! | AGATAGCTCCGATTGGTCAC+CGG | + | Chr1:82704117-82704136 | None:intergenic | 50.0% |
| ! | TCCTCCGGTCTTTTCTAGGT+CGG | + | Chr1:82702481-82702500 | None:intergenic | 50.0% |
| !! | ATCGCCGACTTCTGAAAGTG+CGG | + | Chr1:82704412-82704431 | None:intergenic | 50.0% |
| !! | TGGTGCTATGAGCCACTTAG+AGG | - | Chr1:82704386-82704405 | MsG0180004780.01.T01:intron | 50.0% |
| ACGGAGAGTAGACCAGATGG+AGG | - | Chr1:82703198-82703217 | MsG0180004780.01.T01:CDS | 55.0% | |
| AGATCACCCCGGTGACCAAT+CGG | - | Chr1:82704106-82704125 | MsG0180004780.01.T01:intron | 55.0% | |
| CACCGGGGTGATCTTCTTGA+GGG | + | Chr1:82704100-82704119 | None:intergenic | 55.0% | |
| CCGAGACGAGGATGTTGTGT+TGG | - | Chr1:82703041-82703060 | MsG0180004780.01.T01:CDS | 55.0% | |
| CTGAGCCTTTATGCTGGGAC+TGG | - | Chr1:82704042-82704061 | MsG0180004780.01.T01:intron | 55.0% | |
| CTGGTTCAACGTCTGCGACA+CGG | + | Chr1:82702505-82702524 | None:intergenic | 55.0% | |
| GAAGCTCTCAAGAGCTGCAG+AGG | - | Chr1:82704303-82704322 | MsG0180004780.01.T01:intron | 55.0% | |
| GACCCTCAAGAAGATCACCC+CGG | - | Chr1:82704095-82704114 | MsG0180004780.01.T01:intron | 55.0% | |
| GAGGCCGCACTTTCAGAAGT+CGG | - | Chr1:82704405-82704424 | MsG0180004780.01.T01:CDS | 55.0% | |
| GCTTCTCCGACGACTATGCA+CGG | - | Chr1:82702401-82702420 | MsG0180004780.01.T01:CDS | 55.0% | |
| GTTCCGTGTCCAACACTTGC+CGG | - | Chr1:82702712-82702731 | MsG0180004780.01.T01:CDS | 55.0% | |
| TCACCGGGGTGATCTTCTTG+AGG | + | Chr1:82704101-82704120 | None:intergenic | 55.0% | |
| TGAACTCGAGAGATGCGTCC+AGG | - | Chr1:82702557-82702576 | MsG0180004780.01.T01:CDS | 55.0% | |
| TGTCAGACACCGGCAAGTGT+TGG | + | Chr1:82702724-82702743 | None:intergenic | 55.0% | |
| ! | ATAGCTCCGATTGGTCACCG+GGG | + | Chr1:82704115-82704134 | None:intergenic | 55.0% |
| ! | CGGTTCCTCCGGTCTTTTCT+AGG | + | Chr1:82702485-82702504 | None:intergenic | 55.0% |
| ! | CTGAAAGTGCGGCCTCTAAG+TGG | + | Chr1:82704401-82704420 | None:intergenic | 55.0% |
| ! | GATAGCTCCGATTGGTCACC+GGG | + | Chr1:82704116-82704135 | None:intergenic | 55.0% |
| ! | GGAAGCTGTGTCGGTCTTTG+AGG | - | Chr1:82704281-82704300 | MsG0180004780.01.T01:intron | 55.0% |
| ! | GTTTGATTTCCGGCGGAGGA+AGG | - | Chr1:82702379-82702398 | MsG0180004780.01.T01:CDS | 55.0% |
| ! | TACGGCCGTTTGATTTCCGG+CGG | - | Chr1:82702372-82702391 | MsG0180004780.01.T01:CDS | 55.0% |
| ! | TGGTAAGTTTCGCGTTGGCG+CGG | + | Chr1:82704015-82704034 | None:intergenic | 55.0% |
| !! | ACACCGGCAAGTGTTGGACA+CGG | + | Chr1:82702718-82702737 | None:intergenic | 55.0% |
| !! | GGTCGGCTAGTCTTCGGTAA+AGG | + | Chr1:82702464-82702483 | None:intergenic | 55.0% |
| !! | GTTGGTTGGTGTTGCAGTGC+AGG | - | Chr1:82704233-82704252 | MsG0180004780.01.T01:intron | 55.0% |
| ACGACTATGCACGGCTGCGA+CGG | - | Chr1:82702410-82702429 | MsG0180004780.01.T01:CDS | 60.0% | |
| GCCGACCTAGAAAAGACCGG+AGG | - | Chr1:82702477-82702496 | MsG0180004780.01.T01:CDS | 60.0% | |
| TCGCAGCCGTGCATAGTCGT+CGG | + | Chr1:82702410-82702429 | None:intergenic | 60.0% | |
| ACTATGCACGGCTGCGACGG+CGG | - | Chr1:82702413-82702432 | MsG0180004780.01.T01:CDS | 65.0% | |
| CGTCTGCGACACGGTTCCTC+CGG | + | Chr1:82702496-82702515 | None:intergenic | 65.0% | |
| TCGGAGAAGCCTTCCTCCGC+CGG | + | Chr1:82702391-82702410 | None:intergenic | 65.0% | |
| ! | GGCCGTTTGATTTCCGGCGG+AGG | - | Chr1:82702375-82702394 | MsG0180004780.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 82702366 | 82704653 | 82702366 | ID=MsG0180004780.01;Name=MsG0180004780.01 |
| Chr1 | mRNA | 82702366 | 82704653 | 82702366 | ID=MsG0180004780.01.T01;Parent=MsG0180004780.01;Name=MsG0180004780.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|2|0|480 |
| Chr1 | exon | 82704402 | 82704653 | 82704402 | ID=MsG0180004780.01.T01:exon:8641;Parent=MsG0180004780.01.T01 |
| Chr1 | exon | 82702366 | 82703556 | 82702366 | ID=MsG0180004780.01.T01:exon:8640;Parent=MsG0180004780.01.T01 |
| Chr1 | CDS | 82704402 | 82704653 | 82704402 | ID=MsG0180004780.01.T01:cds;Parent=MsG0180004780.01.T01 |
| Chr1 | CDS | 82702366 | 82703556 | 82702366 | ID=MsG0180004780.01.T01:cds;Parent=MsG0180004780.01.T01 |
| Gene Sequence |
| Protein sequence |
