AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580030144.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030144.01.T01 MTR_5g098140 99.494 395 2 0 115 509 1 395 0.0 815
MsG0580030144.01.T01 MTR_1g067150 35.034 294 172 7 220 500 604 891 4.02e-49 182
MsG0580030144.01.T01 MTR_1g116310 33.654 312 175 7 220 505 238 543 1.55e-47 176
MsG0580030144.01.T01 MTR_6g016590 34.510 255 156 5 219 468 79 327 1.32e-37 142
MsG0580030144.01.T01 MTR_2g099380 25.523 239 134 5 220 418 144 378 2.53e-15 78.6
MsG0580030144.01.T01 MTR_4g068180 25.833 240 134 6 219 418 150 385 8.18e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030144.01.T01 AT3G07890 83.166 398 64 1 115 509 1 398 0.0 696
MsG0580030144.01.T01 AT3G07890 83.166 398 64 1 115 509 1 398 0.0 696
MsG0580030144.01.T01 AT3G07890 83.166 398 64 1 115 509 1 398 0.0 696
MsG0580030144.01.T01 AT3G07890 83.166 398 64 1 115 509 1 398 0.0 696
MsG0580030144.01.T01 AT3G07890 83.166 398 64 1 115 509 1 398 0.0 696
MsG0580030144.01.T01 AT2G37290 35.052 291 171 8 220 500 310 592 3.76e-46 173
MsG0580030144.01.T01 AT2G37290 35.052 291 171 8 220 500 310 592 5.25e-46 172
MsG0580030144.01.T01 AT2G39280 34.740 308 171 7 220 503 252 553 4.00e-43 164
MsG0580030144.01.T01 AT3G55020 34.951 309 169 7 220 503 237 538 4.44e-43 163
MsG0580030144.01.T01 AT3G55020 34.951 309 169 7 220 503 237 538 6.09e-43 163
MsG0580030144.01.T01 AT2G39280 34.740 308 171 7 220 503 224 525 6.82e-43 162
MsG0580030144.01.T01 AT3G55020 34.951 309 169 7 220 503 237 538 2.04e-42 162
MsG0580030144.01.T01 AT2G37290 31.077 325 172 9 220 500 310 626 1.52e-40 156
MsG0580030144.01.T01 AT5G15930 35.686 255 153 5 219 468 77 325 1.58e-38 144
MsG0580030144.01.T01 AT3G02460 33.984 256 158 6 219 469 80 329 4.87e-36 137
MsG0580030144.01.T01 AT3G02460 34.252 254 156 6 220 468 81 328 7.30e-36 137
MsG0580030144.01.T01 AT3G02460 35.556 225 135 5 219 438 80 299 2.37e-35 134
MsG0580030144.01.T01 AT3G02460 34.951 206 124 5 220 420 81 281 3.84e-28 114
MsG0580030144.01.T01 AT3G02460 34.975 203 122 5 220 417 81 278 2.14e-27 113
MsG0580030144.01.T01 AT2G30710 23.137 255 147 6 209 418 120 370 8.68e-12 67.8

Find 135 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTTGTCATCCACTTTA+AGG 0.080620 5:+107338097 None:intergenic
GGCGATGACAATTCTTATTT+TGG 0.120562 5:-107341820 MsG0580030144.01.T01:CDS
TAGATTCAACTGATTCTATT+TGG 0.191316 5:-107341686 MsG0580030144.01.T01:CDS
GTGAAATTTCAAGACCTTTA+CGG 0.248878 5:-107340670 MsG0580030144.01.T01:CDS
AAACCGAAGAAGATGCATTT+TGG 0.266291 5:-107339000 MsG0580030144.01.T01:CDS
TTCAGACAACTCTGCGAGTA+TGG 0.269992 5:-107338606 MsG0580030144.01.T01:intron
AATTCAATTTGCCTTTGATA+TGG 0.289529 5:-107341905 MsG0580030144.01.T01:CDS
TTACTTTGAAGAAGTTGATT+AGG 0.313845 5:-107340459 MsG0580030144.01.T01:CDS
TCAAGCTCCTTCATGACTTC+AGG 0.321554 5:+107338144 None:intergenic
ATGCAGGATTGCAACTCATT+TGG 0.330638 5:-107338787 MsG0580030144.01.T01:intron
TCAAGACCTTTACGGATTTA+CGG 0.333594 5:-107340662 MsG0580030144.01.T01:CDS
AAGGGATACCGCCGGTTCTT+AGG 0.336781 5:-107340435 MsG0580030144.01.T01:CDS
TACTTCTAACCCATCATGTT+GGG 0.337498 5:-107338412 MsG0580030144.01.T01:CDS
TTGCTGAAGCTCTTGGATTT+CGG 0.341582 5:-107341933 MsG0580030144.01.T01:CDS
TGTTACACAAACAACTTATC+AGG 0.346585 5:-107338938 MsG0580030144.01.T01:CDS
AACACCAGGGCTCTCATATC+AGG 0.353913 5:+107337892 None:intergenic
TTGGATGCTTGCTGTCTTGT+TGG 0.355412 5:-107338981 MsG0580030144.01.T01:CDS
CTTACGGTTAGTAAATCATC+TGG 0.358408 5:+107338344 None:intergenic
CATCCAAAATGCATCTTCTT+CGG 0.364689 5:+107338997 None:intergenic
CTATTTGTCATCCACTTTAA+GGG 0.366536 5:+107338098 None:intergenic
TGGTATCTTCATACAACTAT+AGG 0.368495 5:-107340535 MsG0580030144.01.T01:CDS
TCTTTCCGTGATTCTGATGT+TGG 0.376757 5:-107339503 MsG0580030144.01.T01:CDS
CTGAGGGGCATGCTGCTCTT+AGG 0.385895 5:-107339544 MsG0580030144.01.T01:CDS
TGTTGCAGCATTGTTGTTGC+TGG 0.387100 5:-107339029 MsG0580030144.01.T01:CDS
AAATCATCATAATAACTATC+AGG 0.388289 5:+107340361 None:intergenic
AGGCTAGTAAAGGTGCTAAT+TGG 0.395900 5:-107340555 MsG0580030144.01.T01:CDS
GCTACCATTGCTGAAGCTCT+TGG 0.397160 5:-107341940 MsG0580030144.01.T01:CDS
CTTCCCTGGTCATGCATGGC+TGG 0.407109 5:-107339573 MsG0580030144.01.T01:CDS
TAGGAGCTATGGTTCGAGAC+TGG 0.407411 5:-107342014 MsG0580030144.01.T01:CDS
GCTCTTCTTGAATGAATACT+TGG 0.415367 5:+107340703 None:intergenic
ATACCCTGAGGAGGATATAA+AGG 0.419182 5:+107337924 None:intergenic
GGTTATATTCAATGTGGCCT+TGG 0.419884 5:-107338557 MsG0580030144.01.T01:CDS
CAGTAAAACGCGAATCAAAT+CGG 0.428928 5:+107341623 None:intergenic
CTTTCCGTGATTCTGATGTT+GGG 0.431196 5:-107339502 MsG0580030144.01.T01:CDS
ATCAAAAGAAAGGAAGAAAC+AGG 0.435805 5:-107338169 MsG0580030144.01.T01:CDS
AAAACTTCAATGAAGATGTA+AGG 0.440828 5:+107340500 None:intergenic
GTAAATCATCTGGATCAAAT+AGG 0.441554 5:+107338354 None:intergenic
TGAGACAACAAGGTAGAGTT+TGG 0.448600 5:-107340588 MsG0580030144.01.T01:CDS
ACGGGAGACTCTTTGAAAAC+AGG 0.449177 5:+107338715 None:intergenic
TCAATACTGATATTTGAGAT+TGG 0.451864 5:+107340728 None:intergenic
CTAAGAGCAGCATGCCCCTC+AGG 0.454012 5:+107339545 None:intergenic
GAATCCTTTATATCCTCCTC+AGG 0.455082 5:-107337928 MsG0580030144.01.T01:three_prime_UTR
CGGTTCTTAGGCCTAAGGTT+TGG 0.458166 5:-107340423 MsG0580030144.01.T01:CDS
AAAGCTAAATTCCCTTAAAG+TGG 0.461650 5:-107338109 MsG0580030144.01.T01:CDS
GACCTACCGCGAACCTTCCC+TGG 0.461802 5:-107339587 MsG0580030144.01.T01:CDS
TAGAGTTTGGTGGGCATTGG+AGG 0.465496 5:-107340575 MsG0580030144.01.T01:CDS
AGGTAGAGTTTGGTGGGCAT+TGG 0.468349 5:-107340578 MsG0580030144.01.T01:CDS
TTGAAGAAGTTGATTAGGAA+AGG 0.470950 5:-107340454 MsG0580030144.01.T01:CDS
TGATCGATCTGTCTAGTAGC+AGG 0.473866 5:+107340310 None:intergenic
TAAAGGATTCCACAGTTTCA+AGG 0.474893 5:+107337941 None:intergenic
TGAAGAAGTTGATTAGGAAA+GGG 0.478737 5:-107340453 MsG0580030144.01.T01:CDS
TGTCTTGTTGGAAAATGTCC+TGG 0.490418 5:-107338969 MsG0580030144.01.T01:CDS
GTGTCCAGCCATGCATGACC+AGG 0.492772 5:+107339569 None:intergenic
ATATCCTCCTCAGGGTATCA+TGG 0.494325 5:-107337919 MsG0580030144.01.T01:three_prime_UTR
TTCTGATGTTGGGTATTGTC+AGG 0.495259 5:-107339492 MsG0580030144.01.T01:intron
TGAAGCTCTTGGATTTCGGT+TGG 0.502569 5:-107341929 MsG0580030144.01.T01:CDS
TGATTGCTTCCCCAACATGA+TGG 0.503130 5:+107338402 None:intergenic
ACCGCCGGTTCTTAGGCCTA+AGG 0.507228 5:-107340428 MsG0580030144.01.T01:CDS
GACAAAAGCTGTGGAGGGGA+AGG 0.510751 5:-107340338 MsG0580030144.01.T01:CDS
CAGGTGGCATTTGATAAGAT+AGG 0.515677 5:-107338213 MsG0580030144.01.T01:CDS
AGGAGCTATGGTTCGAGACT+GGG 0.515941 5:-107342013 MsG0580030144.01.T01:CDS
TTTCGAAACATTATTGTGGA+AGG 0.520672 5:-107341880 MsG0580030144.01.T01:CDS
CAAATACAATATCAAAAGAA+AGG 0.522444 5:-107338179 MsG0580030144.01.T01:CDS
CGTTGAAGCAGACCGTACTT+AGG 0.525171 5:+107337971 None:intergenic
TGAATGTGTTGAATGAGGTA+AGG 0.526151 5:-107340618 MsG0580030144.01.T01:CDS
AAAATAAAGACAAAATCAAA+GGG 0.526387 5:+107338075 None:intergenic
CTTTACGGATTTACGGTGGA+AGG 0.527547 5:-107340655 MsG0580030144.01.T01:CDS
GGCTGCTACATGGAACTTTG+AGG 0.533408 5:-107341974 MsG0580030144.01.T01:CDS
GATTGCTTCCCCAACATGAT+GGG 0.534270 5:+107338403 None:intergenic
CATGGAAGGTGTAGGAGCTA+TGG 0.534941 5:-107342025 MsG0580030144.01.T01:CDS
GAACCTTCCCTGGTCATGCA+TGG 0.535148 5:-107339577 MsG0580030144.01.T01:CDS
TACTCTAACCAACCTCTGAC+GGG 0.539355 5:+107338697 None:intergenic
CTAAGTGATCGTCCTAAGTA+CGG 0.541595 5:-107337983 MsG0580030144.01.T01:three_prime_UTR
TTGTGTAACAGTCGCTAACC+AGG 0.544589 5:+107338951 None:intergenic
TTACTCTAACCAACCTCTGA+CGG 0.545573 5:+107338696 None:intergenic
GACTCTTTGAAAACAGGCAC+AGG 0.549621 5:+107338721 None:intergenic
GGAACCACTCAGTGGTAACA+AGG 0.552412 5:+107338742 None:intergenic
TAAACACTCTTTGCTCAACA+TGG 0.554405 5:+107338912 None:intergenic
TTACTTCTAACCCATCATGT+TGG 0.558439 5:-107338413 MsG0580030144.01.T01:CDS
TCAGACAACTCTGCGAGTAT+GGG 0.558601 5:-107338605 MsG0580030144.01.T01:intron
GAGATTGGTATTCAAATGCA+AGG 0.558769 5:+107340743 None:intergenic
GTCAAAGCTTTGAAGTCGCA+TGG 0.558841 5:-107341841 MsG0580030144.01.T01:CDS
GACAACGAAAACCAAACCTT+AGG 0.561094 5:+107340412 None:intergenic
GCATGACCAGGGAAGGTTCG+CGG 0.562802 5:+107339581 None:intergenic
CAAACCTTAGGCCTAAGAAC+CGG 0.563264 5:+107340424 None:intergenic
TGCATGGCTGGACACACCTG+AGG 0.567869 5:-107339561 MsG0580030144.01.T01:CDS
GTTTCGAAAATCCATATCAA+AGG 0.568905 5:+107341894 None:intergenic
TTCAAAGAGTCTCCCGTCAG+AGG 0.572974 5:-107338709 MsG0580030144.01.T01:intron
CTTCCACCGTAAATCCGTAA+AGG 0.573362 5:+107340656 None:intergenic
ATTTACGGTGGAAGGGAATG+TGG 0.580573 5:-107340647 MsG0580030144.01.T01:CDS
GTTGAATGAGGTAAGGGAAA+AGG 0.582835 5:-107340611 MsG0580030144.01.T01:CDS
CAGCCATGCATGACCAGGGA+AGG 0.584769 5:+107339574 None:intergenic
TGGGCATTGGAGGCTAGTAA+AGG 0.588086 5:-107340565 MsG0580030144.01.T01:CDS
GATCGATCTGTCTAGTAGCA+GGG 0.591539 5:+107340311 None:intergenic
ACAACAAGGTAGAGTTTGGT+GGG 0.592742 5:-107340584 MsG0580030144.01.T01:CDS
GCATGGCTGGACACACCTGA+GGG 0.595690 5:-107339560 MsG0580030144.01.T01:CDS
CTTCATACAACTATAGGACA+AGG 0.596275 5:-107340529 MsG0580030144.01.T01:CDS
ACAGGAACCTGAAGTCATGA+AGG 0.596550 5:-107338151 MsG0580030144.01.T01:CDS
AAACTTCAATGAAGATGTAA+GGG 0.596630 5:+107340501 None:intergenic
GACAACAAGGTAGAGTTTGG+TGG 0.598220 5:-107340585 MsG0580030144.01.T01:CDS
ACAACATAAACAATACAAGA+AGG 0.600524 5:+107341651 None:intergenic
ACTTCTAACCCATCATGTTG+GGG 0.607842 5:-107338411 MsG0580030144.01.T01:CDS
TCATGAAGGAGCTTGATCAA+AGG 0.615296 5:-107338137 MsG0580030144.01.T01:CDS
TTTACGGATTTACGGTGGAA+GGG 0.617053 5:-107340654 MsG0580030144.01.T01:CDS
GATTAGGAAAGGGATACCGC+CGG 0.624725 5:-107340443 MsG0580030144.01.T01:CDS
AGGGAAAAGGTGAGACAACA+AGG 0.626455 5:-107340598 MsG0580030144.01.T01:CDS
TGATGATTTGACAAAAGCTG+TGG 0.626507 5:-107340347 MsG0580030144.01.T01:CDS
ACGATCACTTAGATGATCGA+TGG 0.626790 5:+107337994 None:intergenic
GACCAGGGAAGGTTCGCGGT+AGG 0.626818 5:+107339585 None:intergenic
TGATTTGACAAAAGCTGTGG+AGG 0.626930 5:-107340344 MsG0580030144.01.T01:CDS
CGAGCAAAACCTTGAAACTG+TGG 0.627223 5:-107337950 MsG0580030144.01.T01:three_prime_UTR
ATCGATCTGTCTAGTAGCAG+GGG 0.629772 5:+107340312 None:intergenic
ATTTGACAAAAGCTGTGGAG+GGG 0.633275 5:-107340342 MsG0580030144.01.T01:CDS
AAATCCAAGAGCTTCAGCAA+TGG 0.640642 5:+107341936 None:intergenic
TTTCCCTTGTTACCACTGAG+TGG 0.641659 5:-107338746 MsG0580030144.01.T01:CDS
AATACCCAACATCAGAATCA+CGG 0.643921 5:+107339498 None:intergenic
GCTTCAGCAATGGTAGCATG+AGG 0.644454 5:+107341946 None:intergenic
GAATGTGTTGAATGAGGTAA+GGG 0.645937 5:-107340617 MsG0580030144.01.T01:CDS
GATTTGACAAAAGCTGTGGA+GGG 0.649265 5:-107340343 MsG0580030144.01.T01:CDS
TGATGTGAATGTGTTGAATG+AGG 0.650814 5:-107340623 MsG0580030144.01.T01:CDS
TGGATCAAATAGGTGATGAG+TGG 0.652823 5:+107338364 None:intergenic
TATGCCTGATATGAGAGCCC+TGG 0.653344 5:-107337896 MsG0580030144.01.T01:three_prime_UTR
GGAAGGTGATTCTCTTAATG+TGG 0.654184 5:-107341863 MsG0580030144.01.T01:CDS
AATCCTTTATATCCTCCTCA+GGG 0.663209 5:-107337927 MsG0580030144.01.T01:three_prime_UTR
TTCATACAACTATAGGACAA+GGG 0.663703 5:-107340528 MsG0580030144.01.T01:CDS
TGTCCAGCCATGCATGACCA+GGG 0.668410 5:+107339570 None:intergenic
ATAATAACTATCAGGAACCG+TGG 0.668857 5:+107340369 None:intergenic
GAACCACTCAGTGGTAACAA+GGG 0.675458 5:+107338743 None:intergenic
ACCTTAGGCCTAAGAACCGG+CGG 0.687012 5:+107340427 None:intergenic
AGACCTTTACGGATTTACGG+TGG 0.702102 5:-107340659 MsG0580030144.01.T01:CDS
GGCTAAGGTTATATTCAATG+TGG 0.703848 5:-107338563 MsG0580030144.01.T01:CDS
CATGGCTGGACACACCTGAG+GGG 0.717304 5:-107339559 MsG0580030144.01.T01:CDS
CAGGCACAGGAACCACTCAG+TGG 0.731988 5:+107338734 None:intergenic
CATACCATGATACCCTGAGG+AGG 0.733548 5:+107337915 None:intergenic
AGGCATACCATGATACCCTG+AGG 0.761482 5:+107337912 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTACCTAAAAAATAAAA+AGG - Chr5:107338319-107338338 MsG0580030144.01.T01:intron 10.0%
!!! ATTTTATATATTGTACTTTA+TGG - Chr5:107341564-107341583 MsG0580030144.01.T01:intron 10.0%
!!! ATTTTTTTTTTTTTTTCTCT+TGG - Chr5:107341772-107341791 MsG0580030144.01.T01:intron 10.0%
!!! TTTTACCTAAAAAATAAAAA+GGG - Chr5:107338320-107338339 MsG0580030144.01.T01:intron 10.0%
!!! TTTTTTATGATATCAAAAAA+GGG - Chr5:107338784-107338803 MsG0580030144.01.T01:CDS 10.0%
!!! TTTTTTTTTTTTTTTCTCTT+GGG - Chr5:107341773-107341792 MsG0580030144.01.T01:intron 10.0%
!! AAAAATAAAGACAAAATCAA+AGG + Chr5:107341758-107341777 None:intergenic 15.0%
!! AAAATAAAGACAAAATCAAA+GGG + Chr5:107341757-107341776 None:intergenic 15.0%
!! AATCAAGATTTAATCAAAAA+AGG + Chr5:107338859-107338878 None:intergenic 15.0%
!! ATCAAGATTTAATCAAAAAA+GGG + Chr5:107338858-107338877 None:intergenic 15.0%
!! GATTCAAAATTCAAATTTAT+GGG + Chr5:107338832-107338851 None:intergenic 15.0%
!!! AACAATTGAAAATTTTCTTA+CGG + Chr5:107341504-107341523 None:intergenic 15.0%
!!! AATTTTTAGATGAATTATGA+AGG + Chr5:107338694-107338713 None:intergenic 15.0%
!!! ATTTTTAGATGAATTATGAA+GGG + Chr5:107338693-107338712 None:intergenic 15.0%
!!! ATTTTTATCAAAACACAAAA+TGG + Chr5:107338885-107338904 None:intergenic 15.0%
!!! CTTTTTTATGATATCAAAAA+AGG - Chr5:107338783-107338802 MsG0580030144.01.T01:CDS 15.0%
!!! TGTTTAAAAATTTTCAAGTT+AGG - Chr5:107340633-107340652 MsG0580030144.01.T01:CDS 15.0%
!!! TTTTTATCAAAACACAAAAT+GGG + Chr5:107338884-107338903 None:intergenic 15.0%
!! AAATCATCATAATAACTATC+AGG + Chr5:107339471-107339490 None:intergenic 20.0%
!! ACTTAAGAAAATACATTCTT+CGG + Chr5:107340742-107340761 None:intergenic 20.0%
!! ACTTTAATATCTTGATTGTT+TGG - Chr5:107340013-107340032 MsG0580030144.01.T01:intron 20.0%
!! CAAATACAATATCAAAAGAA+AGG - Chr5:107341650-107341669 MsG0580030144.01.T01:CDS 20.0%
!! CTTTAATATCTTGATTGTTT+GGG - Chr5:107340014-107340033 MsG0580030144.01.T01:intron 20.0%
!! GGATTCAAAATTCAAATTTA+TGG + Chr5:107338833-107338852 None:intergenic 20.0%
!! TAAGGTAAACAAAAAATGTA+TGG - Chr5:107339045-107339064 MsG0580030144.01.T01:intron 20.0%
!! TGTAATATAGAGATAGAAAA+AGG + Chr5:107338615-107338634 None:intergenic 20.0%
!! TGTATCATCAATTAAAAAAG+AGG + Chr5:107340511-107340530 None:intergenic 20.0%
!!! AATTCCATTAGTTTTGAAAA+GGG - Chr5:107340072-107340091 MsG0580030144.01.T01:intron 20.0%
!!! ACTTTCCCTTTTTATTTTTT+AGG + Chr5:107338328-107338347 None:intergenic 20.0%
! AAAACTTCAATGAAGATGTA+AGG + Chr5:107339332-107339351 None:intergenic 25.0%
! AAACATATGATCAACACAAA+AGG + Chr5:107339649-107339668 None:intergenic 25.0%
! AAACTTCAATGAAGATGTAA+GGG + Chr5:107339331-107339350 None:intergenic 25.0%
! AATAAAACCCTAGAATATAG+GGG + Chr5:107338545-107338564 None:intergenic 25.0%
! AATCACATTGTCTAGATTAA+TGG - Chr5:107339672-107339691 MsG0580030144.01.T01:intron 25.0%
! AATTATGAAGGGAAATCAAA+AGG + Chr5:107338682-107338701 None:intergenic 25.0%
! AATTCAATTTGCCTTTGATA+TGG - Chr5:107337924-107337943 MsG0580030144.01.T01:three_prime_UTR 25.0%
! ACAACATAAACAATACAAGA+AGG + Chr5:107338181-107338200 None:intergenic 25.0%
! ACAACCATTAGTATTATTGT+GGG - Chr5:107339837-107339856 MsG0580030144.01.T01:intron 25.0%
! ACATCACATTAAAATACCTT+GGG + Chr5:107340965-107340984 None:intergenic 25.0%
! AGAATAAAACCCTAGAATAT+AGG + Chr5:107338547-107338566 None:intergenic 25.0%
! AGATTTAATCAAAAAAGGGT+TGG + Chr5:107338854-107338873 None:intergenic 25.0%
! ATAGTAAAACTCAATTCCTT+TGG - Chr5:107340662-107340681 MsG0580030144.01.T01:CDS 25.0%
! ATTAATGTCAATGAGAGTTA+AGG - Chr5:107339774-107339793 MsG0580030144.01.T01:intron 25.0%
! ATTATGAAGGGAAATCAAAA+GGG + Chr5:107338681-107338700 None:intergenic 25.0%
! GAATAAAACCCTAGAATATA+GGG + Chr5:107338546-107338565 None:intergenic 25.0%
! GGGTAAAATTGAAGAAAAAA+GGG + Chr5:107338660-107338679 None:intergenic 25.0%
! GGTAAAATTGAAGAAAAAAG+GGG + Chr5:107338659-107338678 None:intergenic 25.0%
! GTGATGATCATAAACAAAAA+AGG + Chr5:107339558-107339577 None:intergenic 25.0%
! TAAAAACAGAACGAAGAAAT+AGG + Chr5:107338487-107338506 None:intergenic 25.0%
! TACAACCATTAGTATTATTG+TGG - Chr5:107339836-107339855 MsG0580030144.01.T01:intron 25.0%
! TACATCACATTAAAATACCT+TGG + Chr5:107340966-107340985 None:intergenic 25.0%
! TTATTGTCAACTTTAACCAA+AGG + Chr5:107340681-107340700 None:intergenic 25.0%
! TTTATGATCATCACGAAATT+GGG - Chr5:107339564-107339583 MsG0580030144.01.T01:CDS 25.0%
!! GTGACAAATATTGTCTTTTT+AGG + Chr5:107338989-107339008 None:intergenic 25.0%
!! TACATCTTCATTGAAGTTTT+CGG - Chr5:107339332-107339351 MsG0580030144.01.T01:intron 25.0%
!! TAGATTCAACTGATTCTATT+TGG - Chr5:107338143-107338162 MsG0580030144.01.T01:CDS 25.0%
!! TCAATACTGATATTTGAGAT+TGG + Chr5:107339104-107339123 None:intergenic 25.0%
!! TTACTTTGAAGAAGTTGATT+AGG - Chr5:107339370-107339389 MsG0580030144.01.T01:intron 25.0%
!! TTTTTCATAACCATTTCTAC+AGG - Chr5:107340220-107340239 MsG0580030144.01.T01:intron 25.0%
!!! AAGGAAAAAGTATTACTAAG+GGG + Chr5:107341201-107341220 None:intergenic 25.0%
!!! CAAGGAAAAAGTATTACTAA+GGG + Chr5:107341202-107341221 None:intergenic 25.0%
!!! CAGATTTTGATCATAATTGT+GGG - Chr5:107339712-107339731 MsG0580030144.01.T01:intron 25.0%
!!! GAATTCCATTAGTTTTGAAA+AGG - Chr5:107340071-107340090 MsG0580030144.01.T01:intron 25.0%
!!! TCAAGGAAAAAGTATTACTA+AGG + Chr5:107341203-107341222 None:intergenic 25.0%
!!! TGTGTTTTTTGTGTTGTTTA+AGG - Chr5:107339027-107339046 MsG0580030144.01.T01:CDS 25.0%
AAAGCTAAATTCCCTTAAAG+TGG - Chr5:107341720-107341739 MsG0580030144.01.T01:intron 30.0%
AACAACACAAAAAACACAAC+AGG + Chr5:107339025-107339044 None:intergenic 30.0%
AACGTTCTAATCCCTTAAAA+GGG - Chr5:107338278-107338297 MsG0580030144.01.T01:intron 30.0%
ACAACACAAAAAACACAACA+GGG + Chr5:107339024-107339043 None:intergenic 30.0%
ACTAATGGAATTCACATTGT+TGG + Chr5:107340064-107340083 None:intergenic 30.0%
AGAAAGAATGAAGAAAGAAG+AGG + Chr5:107338577-107338596 None:intergenic 30.0%
AGATCCCACAATAATACTAA+TGG + Chr5:107339844-107339863 None:intergenic 30.0%
AGCAAATGTATGAGCATAAT+AGG + Chr5:107340592-107340611 None:intergenic 30.0%
AGTTAAGGAAGATTCATAAG+AGG - Chr5:107339789-107339808 MsG0580030144.01.T01:intron 30.0%
ATCAAAAGAAAGGAAGAAAC+AGG - Chr5:107341660-107341679 MsG0580030144.01.T01:CDS 30.0%
CTATTTGTCATCCACTTTAA+GGG + Chr5:107341734-107341753 None:intergenic 30.0%
CTCTAATGAGCAAAACTTAT+TGG - Chr5:107339749-107339768 MsG0580030144.01.T01:intron 30.0%
GGGGTAAAATTGAAGAAAAA+AGG + Chr5:107338661-107338680 None:intergenic 30.0%
GTAAATCATCTGGATCAAAT+AGG + Chr5:107341478-107341497 None:intergenic 30.0%
GTGAAATTTCAAGACCTTTA+CGG - Chr5:107339159-107339178 MsG0580030144.01.T01:intron 30.0%
GTTGTGTTTCAAATTTGACA+AGG - Chr5:107338962-107338981 MsG0580030144.01.T01:CDS 30.0%
GTTTATGATCATCACGAAAT+TGG - Chr5:107339563-107339582 MsG0580030144.01.T01:CDS 30.0%
GTTTCGAAAATCCATATCAA+AGG + Chr5:107337938-107337957 None:intergenic 30.0%
TATTATGCTCATACATTTGC+TGG - Chr5:107340591-107340610 MsG0580030144.01.T01:CDS 30.0%
TGACACTACTTAATATCTCA+TGG - Chr5:107340449-107340468 MsG0580030144.01.T01:CDS 30.0%
TGGTATCTTCATACAACTAT+AGG - Chr5:107339294-107339313 MsG0580030144.01.T01:intron 30.0%
TGTTACACAAACAACTTATC+AGG - Chr5:107340891-107340910 MsG0580030144.01.T01:intron 30.0%
TTATGAAGGGAAATCAAAAG+GGG + Chr5:107338680-107338699 None:intergenic 30.0%
TTCATACAACTATAGGACAA+GGG - Chr5:107339301-107339320 MsG0580030144.01.T01:intron 30.0%
TTTCGAAACATTATTGTGGA+AGG - Chr5:107337949-107337968 MsG0580030144.01.T01:three_prime_UTR 30.0%
TTTCTTTCCCCTATATTCTA+GGG - Chr5:107338535-107338554 MsG0580030144.01.T01:intron 30.0%
! AATTCTGAAAATTGCCGAAA+TGG - Chr5:107341017-107341036 MsG0580030144.01.T01:intron 30.0%
! ACATCTATTCCTTTTCTTCT+GGG - Chr5:107340536-107340555 MsG0580030144.01.T01:CDS 30.0%
! CAATAAGTTTTGCTCATTAG+AGG + Chr5:107339751-107339770 None:intergenic 30.0%
! GGATTTTCGAAACATTATTG+TGG - Chr5:107337945-107337964 MsG0580030144.01.T01:three_prime_UTR 30.0%
! TACATCTATTCCTTTTCTTC+TGG - Chr5:107340535-107340554 MsG0580030144.01.T01:CDS 30.0%
! TCCTTAATATCCCCTTTTAA+GGG + Chr5:107338292-107338311 None:intergenic 30.0%
! TGAAGAAGTTGATTAGGAAA+GGG - Chr5:107339376-107339395 MsG0580030144.01.T01:intron 30.0%
! TTCCTTAATATCCCCTTTTA+AGG + Chr5:107338293-107338312 None:intergenic 30.0%
! TTGAAGAAGTTGATTAGGAA+AGG - Chr5:107339375-107339394 MsG0580030144.01.T01:intron 30.0%
! TTTGAAACACAACCATGAAT+TGG + Chr5:107338955-107338974 None:intergenic 30.0%
!! GCAGATTTTGATCATAATTG+TGG - Chr5:107339711-107339730 MsG0580030144.01.T01:intron 30.0%
!!! GTACTGACTCTACAATATTT+TGG - Chr5:107340760-107340779 MsG0580030144.01.T01:CDS 30.0%
!!! TGACAATTCTTATTTTGGCT+TGG - Chr5:107338014-107338033 MsG0580030144.01.T01:three_prime_UTR 30.0%
AAACAGAACGAAGAAATAGG+TGG + Chr5:107338484-107338503 None:intergenic 35.0%
AAGAATGAAGAAAGAAGAGG+AGG + Chr5:107338574-107338593 None:intergenic 35.0%
AATACCCAACATCAGAATCA+CGG + Chr5:107340334-107340353 None:intergenic 35.0%
AATCCTTTATATCCTCCTCA+GGG - Chr5:107341902-107341921 MsG0580030144.01.T01:CDS 35.0%
ACAAACATCCTAAAAACACC+AGG + Chr5:107341954-107341973 None:intergenic 35.0%
ACGTTCTAATCCCTTAAAAG+GGG - Chr5:107338279-107338298 MsG0580030144.01.T01:intron 35.0%
AGAATGAAGAAAGAAGAGGA+GGG + Chr5:107338573-107338592 None:intergenic 35.0%
ATAATAACTATCAGGAACCG+TGG + Chr5:107339463-107339482 None:intergenic 35.0%
CAAAAAACACAACAGGGTTA+AGG + Chr5:107339018-107339037 None:intergenic 35.0%
CAAACATCCTAAAAACACCA+GGG + Chr5:107341953-107341972 None:intergenic 35.0%
CAACGTTCTAATCCCTTAAA+AGG - Chr5:107338277-107338296 MsG0580030144.01.T01:intron 35.0%
CAGTAAAACGCGAATCAAAT+CGG + Chr5:107338209-107338228 None:intergenic 35.0%
CATCCAAAATGCATCTTCTT+CGG + Chr5:107340835-107340854 None:intergenic 35.0%
CCTCTAAATAGACCAATTCA+TGG - Chr5:107338940-107338959 MsG0580030144.01.T01:CDS 35.0%
CTTACGGTTAGTAAATCATC+TGG + Chr5:107341488-107341507 None:intergenic 35.0%
CTTCATACAACTATAGGACA+AGG - Chr5:107339300-107339319 MsG0580030144.01.T01:intron 35.0%
CTTTCTTTCCCCTATATTCT+AGG - Chr5:107338534-107338553 MsG0580030144.01.T01:intron 35.0%
GAACTTGTCTAGATGTCAAA+AGG - Chr5:107340169-107340188 MsG0580030144.01.T01:intron 35.0%
GAATGTGTTGAATGAGGTAA+GGG - Chr5:107339212-107339231 MsG0580030144.01.T01:intron 35.0%
GAGATTGGTATTCAAATGCA+AGG + Chr5:107339089-107339108 None:intergenic 35.0%
GATCAGAAACCAAGAAAGAA+CGG + Chr5:107341329-107341348 None:intergenic 35.0%
GCTATTTGTCATCCACTTTA+AGG + Chr5:107341735-107341754 None:intergenic 35.0%
GCTCTTCTTGAATGAATACT+TGG + Chr5:107339129-107339148 None:intergenic 35.0%
GGCTAAGGTTATATTCAATG+TGG - Chr5:107341266-107341285 MsG0580030144.01.T01:intron 35.0%
TAAACACTCTTTGCTCAACA+TGG + Chr5:107340920-107340939 None:intergenic 35.0%
TAAAGGATTCCACAGTTTCA+AGG + Chr5:107341891-107341910 None:intergenic 35.0%
TACTTCTAACCCATCATGTT+GGG - Chr5:107341417-107341436 MsG0580030144.01.T01:intron 35.0%
TCAAGACCTTTACGGATTTA+CGG - Chr5:107339167-107339186 MsG0580030144.01.T01:intron 35.0%
TCCCTTAAAAGGGGATATTA+AGG - Chr5:107338288-107338307 MsG0580030144.01.T01:intron 35.0%
TGAATGTGTTGAATGAGGTA+AGG - Chr5:107339211-107339230 MsG0580030144.01.T01:intron 35.0%
TGATGATTTGACAAAAGCTG+TGG - Chr5:107339482-107339501 MsG0580030144.01.T01:intron 35.0%
TGATGTGAATGTGTTGAATG+AGG - Chr5:107339206-107339225 MsG0580030144.01.T01:intron 35.0%
TGGTACCTTAAAAATTGCCA+AGG + Chr5:107341292-107341311 None:intergenic 35.0%
TTACTTCTAACCCATCATGT+TGG - Chr5:107341416-107341435 MsG0580030144.01.T01:intron 35.0%
TTAGACTTTCCGTTCTTTCT+TGG - Chr5:107341317-107341336 MsG0580030144.01.T01:intron 35.0%
TTGGTCTATTTAGAGGAACT+GGG + Chr5:107338936-107338955 None:intergenic 35.0%
! AAACCGAAGAAGATGCATTT+TGG - Chr5:107340829-107340848 MsG0580030144.01.T01:intron 35.0%
! ATTGGTCTATTTAGAGGAAC+TGG + Chr5:107338937-107338956 None:intergenic 35.0%
! CAGTCCCTTTTCAAAACTAA+TGG + Chr5:107340079-107340098 None:intergenic 35.0%
! CCATGAATTGGTCTATTTAG+AGG + Chr5:107338943-107338962 None:intergenic 35.0%
! TTCATTGAAGTTTTCGGCAT+TGG - Chr5:107339338-107339357 MsG0580030144.01.T01:intron 35.0%
!! GGCGATGACAATTCTTATTT+TGG - Chr5:107338009-107338028 MsG0580030144.01.T01:three_prime_UTR 35.0%
!!! ATGGGATGTTATTTTCTACG+AGG - Chr5:107341242-107341261 MsG0580030144.01.T01:intron 35.0%
!!! CTGGGAAGATATTGTTTTAG+TGG - Chr5:107337834-107337853 MsG0580030144.01.T01:three_prime_UTR 35.0%
!!! GGTGTTTTTAGGATGTTTGT+AGG - Chr5:107341954-107341973 MsG0580030144.01.T01:CDS 35.0%
!!! TCTACAATATTTTGGCTCCA+GGG - Chr5:107340768-107340787 MsG0580030144.01.T01:CDS 35.0%
!!! TGGGATGTTATTTTCTACGA+GGG - Chr5:107341243-107341262 MsG0580030144.01.T01:intron 35.0%
AAAAGGGACTGTTGTCATCA+GGG - Chr5:107340088-107340107 MsG0580030144.01.T01:intron 40.0%
AAATCCAAGAGCTTCAGCAA+TGG + Chr5:107337896-107337915 None:intergenic 40.0%
AATTGCCGAAATGGAAATGC+AGG - Chr5:107341026-107341045 MsG0580030144.01.T01:intron 40.0%
ACAACAAGGTAGAGTTTGGT+GGG - Chr5:107339245-107339264 MsG0580030144.01.T01:intron 40.0%
ACGATCACTTAGATGATCGA+TGG + Chr5:107341838-107341857 None:intergenic 40.0%
ACTTCTAACCCATCATGTTG+GGG - Chr5:107341418-107341437 MsG0580030144.01.T01:intron 40.0%
ATACCCTGAGGAGGATATAA+AGG + Chr5:107341908-107341927 None:intergenic 40.0%
ATCATCCGTTTGATGTTTGC+AGG - Chr5:107341597-107341616 MsG0580030144.01.T01:intron 40.0%
ATGCAGGATTGCAACTCATT+TGG - Chr5:107341042-107341061 MsG0580030144.01.T01:intron 40.0%
ATTCATCTGCTTGCTTAGCA+AGG + Chr5:107340405-107340424 None:intergenic 40.0%
ATTTGACAAAAGCTGTGGAG+GGG - Chr5:107339487-107339506 MsG0580030144.01.T01:intron 40.0%
CAGGTGGCATTTGATAAGAT+AGG - Chr5:107341616-107341635 MsG0580030144.01.T01:intron 40.0%
CCATCTAATCCCAGAAGAAA+AGG + Chr5:107340548-107340567 None:intergenic 40.0%
CGATGCAGTTTAAAGATCGA+GGG - Chr5:107339986-107340005 MsG0580030144.01.T01:intron 40.0%
CTAAGTGATCGTCCTAAGTA+CGG - Chr5:107341846-107341865 MsG0580030144.01.T01:CDS 40.0%
CTGCAACATAATTCAAACCC+TGG + Chr5:107340788-107340807 None:intergenic 40.0%
CTTCCTTCATCTGCAATAAG+AGG + Chr5:107341391-107341410 None:intergenic 40.0%
CTTTCCGTGATTCTGATGTT+GGG - Chr5:107340327-107340346 MsG0580030144.01.T01:CDS 40.0%
GAAAAACATACAAACCTGCG+TGG - Chr5:107339954-107339973 MsG0580030144.01.T01:intron 40.0%
GAATCCTTTATATCCTCCTC+AGG - Chr5:107341901-107341920 MsG0580030144.01.T01:CDS 40.0%
GACAACGAAAACCAAACCTT+AGG + Chr5:107339420-107339439 None:intergenic 40.0%
GATTTGACAAAAGCTGTGGA+GGG - Chr5:107339486-107339505 MsG0580030144.01.T01:intron 40.0%
GCAATCCTGCATTTCCATTT+CGG + Chr5:107341034-107341053 None:intergenic 40.0%
GGAACTGGGTCATTAAGATT+AGG + Chr5:107338922-107338941 None:intergenic 40.0%
GGAAGGTGATTCTCTTAATG+TGG - Chr5:107337966-107337985 MsG0580030144.01.T01:three_prime_UTR 40.0%
GGGAAAACTTCACAAAAGGA+AGG + Chr5:107340381-107340400 None:intergenic 40.0%
GGTTATATTCAATGTGGCCT+TGG - Chr5:107341272-107341291 MsG0580030144.01.T01:intron 40.0%
GTGGTGTTTCTTAGCTGTTT+AGG + Chr5:107338462-107338481 None:intergenic 40.0%
GTTGAATGAGGTAAGGGAAA+AGG - Chr5:107339218-107339237 MsG0580030144.01.T01:intron 40.0%
TCACCTCTTATTGCAGATGA+AGG - Chr5:107341385-107341404 MsG0580030144.01.T01:intron 40.0%
TCATGAAGGAGCTTGATCAA+AGG - Chr5:107341692-107341711 MsG0580030144.01.T01:intron 40.0%
TCGATCTTTAAACTGCATCG+AGG + Chr5:107339986-107340005 None:intergenic 40.0%
TCGATGCAGTTTAAAGATCG+AGG - Chr5:107339985-107340004 MsG0580030144.01.T01:intron 40.0%
TCTTTCCGTGATTCTGATGT+TGG - Chr5:107340326-107340345 MsG0580030144.01.T01:CDS 40.0%
TGAGACAACAAGGTAGAGTT+TGG - Chr5:107339241-107339260 MsG0580030144.01.T01:intron 40.0%
TGATTTGACAAAAGCTGTGG+AGG - Chr5:107339485-107339504 MsG0580030144.01.T01:intron 40.0%
TGGATCAAATAGGTGATGAG+TGG + Chr5:107341468-107341487 None:intergenic 40.0%
TTACTCTAACCAACCTCTGA+CGG + Chr5:107341136-107341155 None:intergenic 40.0%
TTCATCTGCTTGCTTAGCAA+GGG + Chr5:107340404-107340423 None:intergenic 40.0%
TTGCTAAGCAAGCAGATGAA+TGG - Chr5:107340404-107340423 MsG0580030144.01.T01:CDS 40.0%
TTGCTGAAGCTCTTGGATTT+CGG - Chr5:107337896-107337915 MsG0580030144.01.T01:three_prime_UTR 40.0%
TTTACGGATTTACGGTGGAA+GGG - Chr5:107339175-107339194 MsG0580030144.01.T01:intron 40.0%
! TGTCTTGTTGGAAAATGTCC+TGG - Chr5:107340860-107340879 MsG0580030144.01.T01:intron 40.0%
! TTCTGATGTTGGGTATTGTC+AGG - Chr5:107340337-107340356 MsG0580030144.01.T01:CDS 40.0%
!! AGGCTAGTAAAGGTGCTAAT+TGG - Chr5:107339274-107339293 MsG0580030144.01.T01:intron 40.0%
!! TGTGGCCTTGGCAATTTTTA+AGG - Chr5:107341284-107341303 MsG0580030144.01.T01:intron 40.0%
!!! AAGGTTTGGTTTTCGTTGTC+CGG - Chr5:107339420-107339439 MsG0580030144.01.T01:intron 40.0%
!!! CCTTTTCTTCTGGGATTAGA+TGG - Chr5:107340545-107340564 MsG0580030144.01.T01:CDS 40.0%
!!! CTCTACAATATTTTGGCTCC+AGG - Chr5:107340767-107340786 MsG0580030144.01.T01:CDS 40.0%
!!! GGATGTTATTTTCTACGAGG+GGG - Chr5:107341245-107341264 MsG0580030144.01.T01:intron 40.0%
!!! GGGATGTTATTTTCTACGAG+GGG - Chr5:107341244-107341263 MsG0580030144.01.T01:intron 40.0%
!!! TTGTTTTAGTGGCTGCTACA+TGG - Chr5:107337845-107337864 MsG0580030144.01.T01:three_prime_UTR 40.0%
ACAGGAACCTGAAGTCATGA+AGG - Chr5:107341678-107341697 MsG0580030144.01.T01:CDS 45.0%
AGACCTTTACGGATTTACGG+TGG - Chr5:107339170-107339189 MsG0580030144.01.T01:intron 45.0%
AGCATGAGCAACGACGTTAT+CGG + Chr5:107338107-107338126 None:intergenic 45.0%
AGGGAAAAGGTGAGACAACA+AGG - Chr5:107339231-107339250 MsG0580030144.01.T01:intron 45.0%
AGGGGGGAAAACTTCACAAA+AGG + Chr5:107340385-107340404 None:intergenic 45.0%
ATCCGTTTGATGTTTGCAGG+TGG - Chr5:107341600-107341619 MsG0580030144.01.T01:intron 45.0%
ATCGATCTGTCTAGTAGCAG+GGG + Chr5:107339520-107339539 None:intergenic 45.0%
ATTTACGGTGGAAGGGAATG+TGG - Chr5:107339182-107339201 MsG0580030144.01.T01:intron 45.0%
CAAACCTTAGGCCTAAGAAC+CGG + Chr5:107339408-107339427 None:intergenic 45.0%
CAGAACGAAGAAATAGGTGG+TGG + Chr5:107338481-107338500 None:intergenic 45.0%
CGAGCAAAACCTTGAAACTG+TGG - Chr5:107341879-107341898 MsG0580030144.01.T01:CDS 45.0%
CTTCCACCGTAAATCCGTAA+AGG + Chr5:107339176-107339195 None:intergenic 45.0%
CTTTACGGATTTACGGTGGA+AGG - Chr5:107339174-107339193 MsG0580030144.01.T01:intron 45.0%
GAAAAGGGACTGTTGTCATC+AGG - Chr5:107340087-107340106 MsG0580030144.01.T01:intron 45.0%
GAACCACTCAGTGGTAACAA+GGG + Chr5:107341089-107341108 None:intergenic 45.0%
GAACGGAAAGTCTAAGCTAG+TGG + Chr5:107341312-107341331 None:intergenic 45.0%
GACAACAAGGTAGAGTTTGG+TGG - Chr5:107339244-107339263 MsG0580030144.01.T01:intron 45.0%
GATCGATCTGTCTAGTAGCA+GGG + Chr5:107339521-107339540 None:intergenic 45.0%
GATTGCTTCCCCAACATGAT+GGG + Chr5:107341429-107341448 None:intergenic 45.0%
TACTCTAACCAACCTCTGAC+GGG + Chr5:107341135-107341154 None:intergenic 45.0%
TCAAGCTCCTTCATGACTTC+AGG + Chr5:107341688-107341707 None:intergenic 45.0%
TCAGACAACTCTGCGAGTAT+GGG - Chr5:107341224-107341243 MsG0580030144.01.T01:intron 45.0%
TCATCTGCTTGCTTAGCAAG+GGG + Chr5:107340403-107340422 None:intergenic 45.0%
TCGCAGAGTTGTCTGAATCA+AGG + Chr5:107341220-107341239 None:intergenic 45.0%
TGAAGCTCTTGGATTTCGGT+TGG - Chr5:107337900-107337919 MsG0580030144.01.T01:three_prime_UTR 45.0%
TGATCGATCTGTCTAGTAGC+AGG + Chr5:107339522-107339541 None:intergenic 45.0%
TGATTGCTTCCCCAACATGA+TGG + Chr5:107341430-107341449 None:intergenic 45.0%
TGCCACCTGCAAACATCAAA+CGG + Chr5:107341605-107341624 None:intergenic 45.0%
TGCTGCGAAGAAAAAGTCCA+CGG - Chr5:107339443-107339462 MsG0580030144.01.T01:intron 45.0%
TGTCAAAGTGAGAGAGAGAG+AGG - Chr5:107338434-107338453 MsG0580030144.01.T01:intron 45.0%
TTCAGACAACTCTGCGAGTA+TGG - Chr5:107341223-107341242 MsG0580030144.01.T01:intron 45.0%
TTGTGTAACAGTCGCTAACC+AGG + Chr5:107340881-107340900 None:intergenic 45.0%
TTTCCCTTGTTACCACTGAG+TGG - Chr5:107341083-107341102 MsG0580030144.01.T01:intron 45.0%
! ACGGGAGACTCTTTGAAAAC+AGG + Chr5:107341117-107341136 None:intergenic 45.0%
! ATATCCTCCTCAGGGTATCA+TGG - Chr5:107341910-107341929 MsG0580030144.01.T01:CDS 45.0%
! ATGAGAGCCCTGGTGTTTTT+AGG - Chr5:107341943-107341962 MsG0580030144.01.T01:CDS 45.0%
! GACTCTTTGAAAACAGGCAC+AGG + Chr5:107341111-107341130 None:intergenic 45.0%
! TATTTTCTACGAGGGGGCTA+AGG - Chr5:107341251-107341270 MsG0580030144.01.T01:intron 45.0%
! TGTTGCAGCATTGTTGTTGC+TGG - Chr5:107340800-107340819 MsG0580030144.01.T01:intron 45.0%
!! GTCAAAGCTTTGAAGTCGCA+TGG - Chr5:107337988-107338007 MsG0580030144.01.T01:three_prime_UTR 45.0%
!! TGCTCACTAAAAAGTGCCCA+AGG - Chr5:107340946-107340965 MsG0580030144.01.T01:intron 45.0%
!! TTGGATGCTTGCTGTCTTGT+TGG - Chr5:107340848-107340867 MsG0580030144.01.T01:intron 45.0%
AACACCAGGGCTCTCATATC+AGG + Chr5:107341940-107341959 None:intergenic 50.0%
AGGAGCTATGGTTCGAGACT+GGG - Chr5:107337816-107337835 MsG0580030144.01.T01:three_prime_UTR 50.0%
AGGCATACCATGATACCCTG+AGG + Chr5:107341920-107341939 None:intergenic 50.0%
ATCTGCTTGCTTAGCAAGGG+GGG + Chr5:107340401-107340420 None:intergenic 50.0%
CATACCATGATACCCTGAGG+AGG + Chr5:107341917-107341936 None:intergenic 50.0%
CATCTGCTTGCTTAGCAAGG+GGG + Chr5:107340402-107340421 None:intergenic 50.0%
CGGTTCTTAGGCCTAAGGTT+TGG - Chr5:107339406-107339425 MsG0580030144.01.T01:intron 50.0%
CGTTGAAGCAGACCGTACTT+AGG + Chr5:107341861-107341880 None:intergenic 50.0%
GATTAGGAAAGGGATACCGC+CGG - Chr5:107339386-107339405 MsG0580030144.01.T01:intron 50.0%
GCTACCATTGCTGAAGCTCT+TGG - Chr5:107337889-107337908 MsG0580030144.01.T01:three_prime_UTR 50.0%
GCTTCAGCAATGGTAGCATG+AGG + Chr5:107337886-107337905 None:intergenic 50.0%
GGAACCACTCAGTGGTAACA+AGG + Chr5:107341090-107341109 None:intergenic 50.0%
GGCTGCTACATGGAACTTTG+AGG - Chr5:107337855-107337874 MsG0580030144.01.T01:three_prime_UTR 50.0%
TAGGAGCTATGGTTCGAGAC+TGG - Chr5:107337815-107337834 MsG0580030144.01.T01:three_prime_UTR 50.0%
TATGCCTGATATGAGAGCCC+TGG - Chr5:107341933-107341952 MsG0580030144.01.T01:CDS 50.0%
TTCAAAGAGTCTCCCGTCAG+AGG - Chr5:107341120-107341139 MsG0580030144.01.T01:intron 50.0%
! AGGTAGAGTTTGGTGGGCAT+TGG - Chr5:107339251-107339270 MsG0580030144.01.T01:intron 50.0%
! TGGGTATTGTCAGGTACGTG+TGG - Chr5:107340346-107340365 MsG0580030144.01.T01:CDS 50.0%
!! GGACTTTTTCTTCGCAGCAC+CGG + Chr5:107339442-107339461 None:intergenic 50.0%
!! TAGAGTTTGGTGGGCATTGG+AGG - Chr5:107339254-107339273 MsG0580030144.01.T01:intron 50.0%
!! TGGGCATTGGAGGCTAGTAA+AGG - Chr5:107339264-107339283 MsG0580030144.01.T01:intron 50.0%
AAGAGTCTCCCGTCAGAGGT+TGG - Chr5:107341124-107341143 MsG0580030144.01.T01:intron 55.0%
ACCTTAGGCCTAAGAACCGG+CGG + Chr5:107339405-107339424 None:intergenic 55.0%
CGCGGTAGGTCCTGTAGAAA+TGG + Chr5:107340233-107340252 None:intergenic 55.0%
GAACCTTCCCTGGTCATGCA+TGG - Chr5:107340252-107340271 MsG0580030144.01.T01:intron 55.0%
GACAAAAGCTGTGGAGGGGA+AGG - Chr5:107339491-107339510 MsG0580030144.01.T01:intron 55.0%
TGTCCAGCCATGCATGACCA+GGG + Chr5:107340262-107340281 None:intergenic 55.0%
!! AAGGGATACCGCCGGTTCTT+AGG - Chr5:107339394-107339413 MsG0580030144.01.T01:intron 55.0%
CAGCCATGCATGACCAGGGA+AGG + Chr5:107340258-107340277 None:intergenic 60.0%
CAGGCACAGGAACCACTCAG+TGG + Chr5:107341098-107341117 None:intergenic 60.0%
CATCGAGGACATGTCCACGC+AGG + Chr5:107339971-107339990 None:intergenic 60.0%
CATGGCTGGACACACCTGAG+GGG - Chr5:107340270-107340289 MsG0580030144.01.T01:intron 60.0%
CTAAGAGCAGCATGCCCCTC+AGG + Chr5:107340287-107340306 None:intergenic 60.0%
CTTCCCTGGTCATGCATGGC+TGG - Chr5:107340256-107340275 MsG0580030144.01.T01:intron 60.0%
GCATGACCAGGGAAGGTTCG+CGG + Chr5:107340251-107340270 None:intergenic 60.0%
GCATGGCTGGACACACCTGA+GGG - Chr5:107340269-107340288 MsG0580030144.01.T01:intron 60.0%
GTGTCCAGCCATGCATGACC+AGG + Chr5:107340263-107340282 None:intergenic 60.0%
TGCATGGCTGGACACACCTG+AGG - Chr5:107340268-107340287 MsG0580030144.01.T01:intron 60.0%
! CTGAGGGGCATGCTGCTCTT+AGG - Chr5:107340285-107340304 MsG0580030144.01.T01:intron 60.0%
!! ACCGCCGGTTCTTAGGCCTA+AGG - Chr5:107339401-107339420 MsG0580030144.01.T01:intron 60.0%
GACCAGGGAAGGTTCGCGGT+AGG + Chr5:107340247-107340266 None:intergenic 65.0%
GACCTACCGCGAACCTTCCC+TGG - Chr5:107340242-107340261 MsG0580030144.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 107337805 107342046 107337805 ID=MsG0580030144.01;Name=MsG0580030144.01
Chr5 mRNA 107337805 107342046 107337805 ID=MsG0580030144.01.T01;Parent=MsG0580030144.01;Name=MsG0580030144.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0.75|0.66|1|1|1|9|293|509
Chr5 exon 107337805 107338232 107337805 ID=MsG0580030144.01.T01:exon:14855;Parent=MsG0580030144.01.T01
Chr5 exon 107338349 107338450 107338349 ID=MsG0580030144.01.T01:exon:14854;Parent=MsG0580030144.01.T01
Chr5 exon 107338546 107338623 107338546 ID=MsG0580030144.01.T01:exon:14853;Parent=MsG0580030144.01.T01
Chr5 exon 107338710 107338803 107338710 ID=MsG0580030144.01.T01:exon:14852;Parent=MsG0580030144.01.T01
Chr5 exon 107338884 107339062 107338884 ID=MsG0580030144.01.T01:exon:14851;Parent=MsG0580030144.01.T01
Chr5 exon 107339493 107339609 107339493 ID=MsG0580030144.01.T01:exon:14850;Parent=MsG0580030144.01.T01
Chr5 exon 107340309 107340802 107340309 ID=MsG0580030144.01.T01:exon:14849;Parent=MsG0580030144.01.T01
Chr5 exon 107341619 107341705 107341619 ID=MsG0580030144.01.T01:exon:14848;Parent=MsG0580030144.01.T01
Chr5 exon 107341803 107342046 107341803 ID=MsG0580030144.01.T01:exon:14847;Parent=MsG0580030144.01.T01
Chr5 CDS 107341803 107342046 107341803 ID=MsG0580030144.01.T01:cds;Parent=MsG0580030144.01.T01
Chr5 CDS 107341619 107341705 107341619 ID=MsG0580030144.01.T01:cds;Parent=MsG0580030144.01.T01
Chr5 CDS 107340309 107340802 107340309 ID=MsG0580030144.01.T01:cds;Parent=MsG0580030144.01.T01
Chr5 CDS 107339493 107339609 107339493 ID=MsG0580030144.01.T01:cds;Parent=MsG0580030144.01.T01
Chr5 CDS 107338884 107339062 107338884 ID=MsG0580030144.01.T01:cds;Parent=MsG0580030144.01.T01
Chr5 CDS 107338710 107338803 107338710 ID=MsG0580030144.01.T01:cds;Parent=MsG0580030144.01.T01
Chr5 CDS 107338546 107338623 107338546 ID=MsG0580030144.01.T01:cds;Parent=MsG0580030144.01.T01
Chr5 CDS 107338349 107338450 107338349 ID=MsG0580030144.01.T01:cds;Parent=MsG0580030144.01.T01
Chr5 CDS 107338098 107338232 107338098 ID=MsG0580030144.01.T01:cds;Parent=MsG0580030144.01.T01
Chr5 three_prime_UTR 107337805 107338097 107337805 ID=MsG0580030144.01.T01:three_prime_utr;Parent=MsG0580030144.01.T01
Gene Sequence

>MsG0580030144.01.T01

ATGGAAGGTGTAGGAGCTATGGTTCGAGACTGGGAAGATATTGTTTTAGTGGCTGCTACATGGAACTTTGAGGCACTTCCTCATGCTACCATTGCTGAAGCTCTTGGATTTCGGTTGGCAATTCAATTTGCCTTTGATATGGATTTTCGAAACATTATTGTGGAAGGTGATTCTCTTAATGTGGTCAAAGCTTTGAAGTCGCATGGCGATGACAATTCTTATTTTGGCTTGGTGATTAATGATTATTCAACTGATTCTATTTGGATTGAAGAAATTCCTTCTTGTATTGTTTATGTTGTCGCAACCGATTTGATTCGCGTTTTACTGAAATGTAAACAAAAAATGTATGGAACAAAAAGCAAAATAGACCTTGCATTTGAATACCAATCTCAAATATCAGTATTGAGACCAAGTATTCATTCAAGAAGAGCAAATCTAACTGTGAAATTTCAAGACCTTTACGGATTTACGGTGGAAGGGAATGTGGATGATGTGAATGTGTTGAATGAGGTAAGGGAAAAGGTGAGACAACAAGGTAGAGTTTGGTGGGCATTGGAGGCTAGTAAAGGTGCTAATTGGTATCTTCATACAACTATAGGACAAGGGAGTGCCCTTACATCTTCATTGAAGTTTTCGGCATTGGCTAATGCTATTACTTTGAAGAAGTTGATTAGGAAAGGGATACCGCCGGTTCTTAGGCCTAAGGTTTGGTTTTCGTTGTCCGGTGCTGCGAAGAAAAAGTCCACGGTTCCTGATAGTTATTATGATGATTTGACAAAAGCTGTGGAGGGGAAGGTTACCCCTGCTACTAGACAGATCGATCATGACCTACCGCGAACCTTCCCTGGTCATGCATGGCTGGACACACCTGAGGGGCATGCTGCTCTTAGGCGTGTTCTTGTTGCATATTCTTTCCGTGATTCTGATGTTGGGTATTGTCAGGGTTTGAATTATGTTGCAGCATTGTTGTTGCTGGTCATGAAAACCGAAGAAGATGCATTTTGGATGCTTGCTGTCTTGTTGGAAAATGTCCTGGTTAGCGACTGTTACACAAACAACTTATCAGGATGCCATGTTGAGCAAAGAGTGTTTAAAGACTTGCTCACTAAAAAGTGCCCAAGGATTGCAACTCATTTGGATTCTTTAGAATTTGACGTTTCCCTTGTTACCACTGAGTGGTTCCTGTGCCTGTTTTCAAAGAGTCTCCCGTCAGAGACAACTCTGCGAGTATGGGATGTTATTTTCTACGAGGGGGCTAAGGTTATATTCAATGTGGCCTTGGCAATTTTTAAGATGAAGGAAGATCAATTACTTCTAACCCATCATGTTGGGGAAGCAATCAATATTCTGCATCAGACCACTCATCACCTATTTGATCCAGATGATTTACTAACCGTGGCATTTGATAAGATAGGTTCGATGACAACAAATACAATATCAAAAGAAAGGAAGAAACAGGAACCTGAAGTCATGAAGGAGCTTGATCAAAGGATAAGAAAGCTAAATTCCCTTAAAGTGGATGACAAATAG
Protein sequence

>MsG0580030144.01.T01

MEGVGAMVRDWEDIVLVAATWNFEALPHATIAEALGFRLAIQFAFDMDFRNIIVEGDSLNVVKALKSHGDDNSYFGLVINDYSTDSIWIEEIPSCIVYVVATDLIRVLLKCKQKMYGTKSKIDLAFEYQSQISVLRPSIHSRRANLTVKFQDLYGFTVEGNVDDVNVLNEVREKVRQQGRVWWALEASKGANWYLHTTIGQGSALTSSLKFSALANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPDSYYDDLTKAVEGKVTPATRQIDHDLPRTFPGHAWLDTPEGHAALRRVLVAYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVSDCYTNNLSGCHVEQRVFKDLLTKKCPRIATHLDSLEFDVSLVTTEWFLCLFSKSLPSETTLRVWDVIFYEGAKVIFNVALAIFKMKEDQLLLTHHVGEAINILHQTTHHLFDPDDLLTVAFDKIGSMTTNTISKERKKQEPEVMKELDQRIRKLNSLKVDDK*