AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018606.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018606.01.T01 MTR_4g015260 82.000 500 25 7 13 449 13 510 0.0 796
MsG0480018606.01.T01 MTR_4g015260 91.202 341 26 1 109 449 39 375 0.0 627
MsG0480018606.01.T01 MTR_7g067340 60.619 485 118 6 37 448 28 512 0.0 556
MsG0480018606.01.T01 MTR_4g015250 68.000 50 11 1 392 436 1 50 9.35e-17 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018606.01.T01 AT5G01220 60.739 433 105 4 80 447 75 507 0.0 524
MsG0480018606.01.T01 AT5G01220 75.417 240 59 0 127 366 187 426 1.25e-128 379

Find 107 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTACAATACTGCTATT+TGG 0.201513 4:-7281906 MsG0480018606.01.T01:CDS
TCTATTCGATTTAGAACTTT+TGG 0.204011 4:-7287659 MsG0480018606.01.T01:CDS
GAAGATCAAGACGGCAAAAT+TGG 0.254160 4:-7282081 MsG0480018606.01.T01:CDS
ACAATACTGCTATTTGGTTT+TGG 0.272252 4:-7281900 MsG0480018606.01.T01:CDS
TGATCTTCAGTGATTATGTC+TGG 0.298230 4:+7282096 None:intergenic
AGAAAGAAAGAAAGTATCTT+AGG 0.318476 4:+7287904 None:intergenic
GTCTCAGAGGCCCTATCTTC+AGG 0.319836 4:-7282153 MsG0480018606.01.T01:CDS
TTTAATCTACATTATAATAA+TGG 0.320158 4:+7281629 None:intergenic
TGATTAATAATATTATAATA+AGG 0.321072 4:+7287855 None:intergenic
TATAAAGTACCTTCGAGAAA+TGG 0.321891 4:-7286006 MsG0480018606.01.T01:CDS
ATGAAAGAAACTCACGAAAA+AGG 0.328278 4:+7287413 None:intergenic
CAGCTAACAAGATCCGTCTT+TGG 0.335760 4:-7283574 MsG0480018606.01.T01:CDS
TTGGATATTCTCTTATTTGA+TGG 0.339385 4:+7287952 None:intergenic
TAATGTTAAAAGACACATTT+GGG 0.340062 4:-7281580 MsG0480018606.01.T01:three_prime_UTR
GAATCTTTCCAAAGTTTAGA+AGG 0.348094 4:+7281783 None:intergenic
ACAATAGCGATTCGTGCTTC+AGG 0.349145 4:+7282894 None:intergenic
ATTTCATGTGACTTGTACTT+AGG 0.354414 4:+7283521 None:intergenic
TTCCTAGATACACATTTAGT+TGG 0.367508 4:-7284162 MsG0480018606.01.T01:CDS
GTATTAAACAAATGAATGAT+TGG 0.373954 4:-7281724 MsG0480018606.01.T01:three_prime_UTR
CAACAGGAATCCCTGAAGAT+AGG 0.378960 4:+7282142 None:intergenic
TCAATTACCTATACAACTTC+GGG 0.383739 4:+7281814 None:intergenic
ACATGCAACCTTCTAAACTT+TGG 0.388340 4:-7281791 MsG0480018606.01.T01:three_prime_UTR
TCCTAGGCTTGTCATGCTCT+TGG 0.388665 4:+7281511 None:intergenic
GAATGAACGGTTGTGGAGAT+AGG 0.398931 4:+7287710 None:intergenic
TCTCAGAGGCCCTATCTTCA+GGG 0.414826 4:-7282152 MsG0480018606.01.T01:CDS
ATAAAGTACCTTCGAGAAAT+GGG 0.417934 4:-7286005 MsG0480018606.01.T01:CDS
ATTATTCATGTCGGGCGTCT+TGG 0.421807 4:-7283379 MsG0480018606.01.T01:CDS
GATTCCTTGCTTGATTACTT+AGG 0.423601 4:-7281765 MsG0480018606.01.T01:three_prime_UTR
ATATCATTCAAAACAGAATC+AGG 0.424694 4:+7287479 None:intergenic
TTAATGTTAAAAGACACATT+TGG 0.425412 4:-7281581 MsG0480018606.01.T01:three_prime_UTR
AAAAGCCGCGCGTATAGAAA+TGG 0.427629 4:-7281971 MsG0480018606.01.T01:CDS
CCGGCACGTGCTCCCACAAC+AGG 0.431772 4:+7282126 None:intergenic
ATCTTCAGGGATTCCTGTTG+TGG 0.434726 4:-7282139 MsG0480018606.01.T01:CDS
GAAGCACGAATCGCTATTGT+TGG 0.443160 4:-7282891 MsG0480018606.01.T01:CDS
AAATATGTTTCGTTAGCCAT+TGG 0.444300 4:+7281845 None:intergenic
TTCAATTACCTATACAACTT+CGG 0.448232 4:+7281813 None:intergenic
GATGCTAAGGACTCTATGAT+TGG 0.453451 4:+7287933 None:intergenic
TGAATAATCAAGGGCTTCTC+CGG 0.460954 4:+7283394 None:intergenic
CCCGTCTCCCGAAGTTGTAT+AGG 0.463165 4:-7281821 MsG0480018606.01.T01:exon
GATCTTCAGTGATTATGTCT+GGG 0.464038 4:+7282097 None:intergenic
AGCCCTTGATTATTCATGTC+GGG 0.466222 4:-7283387 MsG0480018606.01.T01:CDS
TCTTCAGGGATTCCTGTTGT+GGG 0.476531 4:-7282138 MsG0480018606.01.T01:CDS
ATGACAAGCCTAGGAGGATC+TGG 0.477090 4:-7281503 MsG0480018606.01.T01:three_prime_UTR
ATGTAACTTACACCGGTACA+TGG 0.477319 4:+7284459 None:intergenic
AACATTCCTGTGAAAACTAC+AGG 0.493872 4:+7282258 None:intergenic
CCTGTTGTGGGAGCACGTGC+CGG 0.495248 4:-7282126 MsG0480018606.01.T01:CDS
AGCCAACTAAATGTGTATCT+AGG 0.495411 4:+7284160 None:intergenic
AATGGAGAAGTATGACTGGA+GGG 0.497567 4:-7281953 MsG0480018606.01.T01:CDS
GTGGAGATAGGTGAGAGAAA+AGG 0.499315 4:+7287722 None:intergenic
AACAGGAATCCCTGAAGATA+GGG 0.501178 4:+7282143 None:intergenic
CCTATACAACTTCGGGAGAC+GGG 0.510470 4:+7281821 None:intergenic
GAAGAAGCTAGAGTAACAAC+AGG 0.518580 4:-7283966 MsG0480018606.01.T01:intron
TTCAGAGTATGTTACCTGTA+GGG 0.520308 4:+7282861 None:intergenic
ACCTATACAACTTCGGGAGA+CGG 0.521685 4:+7281820 None:intergenic
ACGCCCGACATGAATAATCA+AGG 0.525995 4:+7283384 None:intergenic
CGAATCGCTATTGTTGGAGA+TGG 0.527504 4:-7282885 MsG0480018606.01.T01:CDS
CAAGATCCGTCTTTGGAACA+AGG 0.529732 4:-7283567 MsG0480018606.01.T01:CDS
TACTATTACCAGATCCTCCT+AGG 0.530300 4:+7281495 None:intergenic
AACTATTGTTACCATTCCAA+TGG 0.534359 4:-7281861 MsG0480018606.01.T01:CDS
ATTGGATATCTCTACACTCC+AGG 0.535829 4:-7282063 MsG0480018606.01.T01:CDS
GTTATGCAGCAATGGTGAAC+CGG 0.545868 4:-7283413 MsG0480018606.01.T01:intron
AAGCAATCGTTGAGATCACC+TGG 0.546774 4:+7282045 None:intergenic
GTCTTATCATACCCATGTAC+CGG 0.547862 4:-7284471 MsG0480018606.01.T01:CDS
GTATGATAAGACATGACAAT+CGG 0.548082 4:+7284482 None:intergenic
GACAACTTGACCAAGTGTCT+CGG 0.550994 4:+7282173 None:intergenic
CGCAGAGTTGAGAGAAACGA+TGG 0.551118 4:-7281995 MsG0480018606.01.T01:CDS
TCTTAGGACAAATGATGCTA+AGG 0.551164 4:+7287920 None:intergenic
ACATTTGGGCAACTAGTAAG+TGG 0.555660 4:-7281566 MsG0480018606.01.T01:three_prime_UTR
CTAGTGCCATCAGTTGCCAT+TGG 0.559207 4:-7283999 MsG0480018606.01.T01:CDS
AGAAGAAGAATGAACGGTTG+TGG 0.560439 4:+7287703 None:intergenic
CACACGACTTTGCAGTGTCA+TGG 0.562589 4:-7282925 MsG0480018606.01.T01:intron
CCGTCAGAGTCCGAGACACT+TGG 0.566913 4:-7282183 MsG0480018606.01.T01:CDS
TAGAAATGGAGAAGTATGAC+TGG 0.568964 4:-7281957 MsG0480018606.01.T01:CDS
ATTTGAAGAAGAAGAATGAA+CGG 0.569114 4:+7287697 None:intergenic
TCCAAGAGCATGACAAGCCT+AGG 0.576139 4:-7281512 MsG0480018606.01.T01:three_prime_UTR
TGTTTCGTTAGCCATTGGAA+TGG 0.577632 4:+7281850 None:intergenic
CGCCCGACATGAATAATCAA+GGG 0.578056 4:+7283385 None:intergenic
TTGTTGGAGATGGACCCTAC+AGG 0.587255 4:-7282875 MsG0480018606.01.T01:intron
GGCTAGTGCAACCAATGTGG+TGG 0.593060 4:-7284141 MsG0480018606.01.T01:CDS
GACTTTGCAGTGTCATGGAT+AGG 0.595761 4:-7282920 MsG0480018606.01.T01:intron
CCTCATCTCCCATTTCTCGA+AGG 0.599834 4:+7285997 None:intergenic
GTTGTGGGAGCACGTGCCGG+TGG 0.600457 4:-7282123 MsG0480018606.01.T01:CDS
CAACACCCTTGTTCCAAAGA+CGG 0.603176 4:+7283561 None:intergenic
AAATGGAGAAGTATGACTGG+AGG 0.604480 4:-7281954 MsG0480018606.01.T01:CDS
CCTTCGAGAAATGGGAGATG+AGG 0.605105 4:-7285997 MsG0480018606.01.T01:intron
AACTCTGCGTCATGCAACAG+AGG 0.605719 4:+7282009 None:intergenic
GAATTCTAGAGATGAAGAAG+AGG 0.606553 4:-7287507 MsG0480018606.01.T01:CDS
GATTATGTCTGGGATTCCAC+CGG 0.608023 4:+7282107 None:intergenic
CTTCTCCATTTCTATACGCG+CGG 0.612202 4:+7281966 None:intergenic
GCTAGTGCAACCAATGTGGT+GGG 0.619529 4:-7284140 MsG0480018606.01.T01:CDS
AAGCCCTTGATTATTCATGT+CGG 0.619815 4:-7283388 MsG0480018606.01.T01:CDS
TGTAACTTACACCGGTACAT+GGG 0.619965 4:+7284460 None:intergenic
AAAGCCTAAGTAATCAAGCA+AGG 0.628104 4:+7281761 None:intergenic
ATACTTAGAACCCACCACAT+TGG 0.640290 4:+7284130 None:intergenic
AAGAGCATGACAAGCCTAGG+AGG 0.640544 4:-7281509 MsG0480018606.01.T01:three_prime_UTR
TTATCTCAAGCATATGCTAG+TGG 0.642840 4:-7282222 MsG0480018606.01.T01:CDS
CCAAGTGTCTCGGACTCTGA+CGG 0.649173 4:+7282183 None:intergenic
AATTCTAGAGATGAAGAAGA+GGG 0.652792 4:-7287506 MsG0480018606.01.T01:CDS
GCAGAGTTGAGAGAAACGAT+GGG 0.657502 4:-7281994 MsG0480018606.01.T01:CDS
AAGATCCGTCTTTGGAACAA+GGG 0.660742 4:-7283566 MsG0480018606.01.T01:CDS
ATAAGGTTGAGTATAGTGTG+TGG 0.676546 4:+7287872 None:intergenic
ATGAAATGCGATTAAGACTG+AGG 0.680996 4:-7283505 MsG0480018606.01.T01:intron
ACTTGGTCAAGTTGTCTCAG+AGG 0.688021 4:-7282166 MsG0480018606.01.T01:CDS
TCATTCAAAACAGAATCAGG+AGG 0.706543 4:+7287482 None:intergenic
ATAATCACTGAAGATCAAGA+CGG 0.723056 4:-7282090 MsG0480018606.01.T01:CDS
GTTGGCTAGTGCAACCAATG+TGG 0.723763 4:-7284144 MsG0480018606.01.T01:CDS
TTTCACAGGAATGTTAAGCG+GGG 0.737605 4:-7282250 MsG0480018606.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTATAATAAAAAAA+TGG + Chr4:7282050-7282069 None:intergenic 0.0%
!! AAAAATTATAATAAAAAAAT+GGG + Chr4:7282049-7282068 None:intergenic 0.0%
!! TATAAAATCAAAAAAAATTG+AGG + Chr4:7283483-7283502 None:intergenic 10.0%
!! TATTATTAAAAAGATTGAAT+TGG + Chr4:7281582-7281601 None:intergenic 10.0%
!! TTTAATCTACATTATAATAA+TGG + Chr4:7287780-7287799 None:intergenic 10.0%
!!! CAATTTTTTTTGATTTTATA+TGG - Chr4:7283483-7283502 MsG0480018606.01.T01:intron 10.0%
!!! TTGATCTTTATTTATTTTTT+TGG - Chr4:7285211-7285230 MsG0480018606.01.T01:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + Chr4:7283987-7284006 None:intergenic 100.0%
!! AAAGAAAAAAAAATGTGAAA+AGG + Chr4:7281621-7281640 None:intergenic 15.0%
!! AATATAAAATGATTTACGTT+TGG - Chr4:7282536-7282555 MsG0480018606.01.T01:intron 15.0%
!! AATTAAAATGTTATCAATCA+TGG + Chr4:7285152-7285171 None:intergenic 15.0%
!! TAAAAATGTATCAATTTATG+AGG + Chr4:7286982-7287001 None:intergenic 15.0%
!! TCTAATATAAACTAAATTTC+AGG - Chr4:7284863-7284882 MsG0480018606.01.T01:intron 15.0%
!! TTATGAAAATAAACTGAAAA+CGG - Chr4:7285641-7285660 MsG0480018606.01.T01:intron 15.0%
!!! TAAGGTTTAAAAAATTTTCA+GGG + Chr4:7283187-7283206 None:intergenic 15.0%
!!! TCTTTTTTTGTTATATTGTT+TGG - Chr4:7282390-7282409 MsG0480018606.01.T01:intron 15.0%
!!! TTAAGGTTTAAAAAATTTTC+AGG + Chr4:7283188-7283207 None:intergenic 15.0%
!! AAAATTACAATACTGCTATT+TGG - Chr4:7287500-7287519 MsG0480018606.01.T01:CDS 20.0%
!! AAACTTTCTAAGCTTAAAAA+TGG + Chr4:7281807-7281826 None:intergenic 20.0%
!! AAATTATTAGTATGAAGCTA+TGG + Chr4:7284446-7284465 None:intergenic 20.0%
!! CATTCATGTAAAATAAACTT+TGG - Chr4:7284743-7284762 MsG0480018606.01.T01:intron 20.0%
!! GTATTAAACAAATGAATGAT+TGG - Chr4:7287682-7287701 MsG0480018606.01.T01:CDS 20.0%
!! TAATGTTAAAAGACACATTT+GGG - Chr4:7287826-7287845 MsG0480018606.01.T01:five_prime_UTR 20.0%
!! TATATTTGTGCATGTTATAT+AGG - Chr4:7283615-7283634 MsG0480018606.01.T01:intron 20.0%
!! TTAAGAGACAAAAGAAATAA+TGG - Chr4:7287014-7287033 MsG0480018606.01.T01:intron 20.0%
!! TTAATGTTAAAAGACACATT+TGG - Chr4:7287825-7287844 MsG0480018606.01.T01:five_prime_UTR 20.0%
!!! AAGGTTTAAAAAATTTTCAG+GGG + Chr4:7283186-7283205 None:intergenic 20.0%
!!! AATAGTGAATGAAATGATTT+TGG - Chr4:7284673-7284692 MsG0480018606.01.T01:intron 20.0%
!!! AATATTTGTTGTTAACTTAC+AGG - Chr4:7287095-7287114 MsG0480018606.01.T01:intron 20.0%
!!! AGAGTTTAGATTTTCTTAAA+AGG - Chr4:7286058-7286077 MsG0480018606.01.T01:intron 20.0%
!!! ATAGATCAATGATTTGAAAT+TGG - Chr4:7282231-7282250 MsG0480018606.01.T01:CDS 20.0%
!!! ATATTTAATTCACTTTTTGC+CGG + Chr4:7282521-7282540 None:intergenic 20.0%
!!! ATATTTGTTGTTAACTTACA+GGG - Chr4:7287096-7287115 MsG0480018606.01.T01:intron 20.0%
!!! GAAATTTCTTTGATTTTTGT+TGG - Chr4:7286565-7286584 MsG0480018606.01.T01:intron 20.0%
!!! GTTTGACTTTATTTTATCTT+TGG + Chr4:7285579-7285598 None:intergenic 20.0%
!!! TAAACTAAATTTCAGGTTTT+TGG - Chr4:7284870-7284889 MsG0480018606.01.T01:intron 20.0%
!!! TCATTATTTTCAAATTTGCA+AGG - Chr4:7284997-7285016 MsG0480018606.01.T01:intron 20.0%
!!! TTCATTTTCTGTATATTTAG+TGG - Chr4:7287719-7287738 MsG0480018606.01.T01:CDS 20.0%
!!! TTTTAAAGAAGAAAACACTT+TGG - Chr4:7284103-7284122 MsG0480018606.01.T01:intron 20.0%
! AAACCAAGACTTATATTACA+TGG + Chr4:7283551-7283570 None:intergenic 25.0%
! AACTAGAAAACATGGAATTA+AGG + Chr4:7283205-7283224 None:intergenic 25.0%
! AATCTAGCAGTTAATAAATG+AGG + Chr4:7284644-7284663 None:intergenic 25.0%
! AGAAACATATCTTGTAAAAG+TGG + Chr4:7286205-7286224 None:intergenic 25.0%
! AGTAAACTCAGTTTAATTCT+TGG - Chr4:7282984-7283003 MsG0480018606.01.T01:intron 25.0%
! ATATCATTCAAAACAGAATC+AGG + Chr4:7281930-7281949 None:intergenic 25.0%
! ATTAAGCTATTATCCAAACA+GGG + Chr4:7285527-7285546 None:intergenic 25.0%
! ATTTGAAGAAGAAGAATGAA+CGG + Chr4:7281712-7281731 None:intergenic 25.0%
! CAAACTAATGACTTTCTAAT+GGG - Chr4:7286621-7286640 MsG0480018606.01.T01:intron 25.0%
! CAATATAAGTTAATGTTTCC+CGG + Chr4:7286102-7286121 None:intergenic 25.0%
! CTATCGTTCAAACAAATAAT+TGG - Chr4:7284291-7284310 MsG0480018606.01.T01:intron 25.0%
! GAGTTAAATAAGCGTATATT+TGG + Chr4:7284842-7284861 None:intergenic 25.0%
! GTAAAATATGTAACTTACAC+CGG + Chr4:7284957-7284976 None:intergenic 25.0%
! TAATGTAGTAAAAGTGATTC+CGG - Chr4:7282499-7282518 MsG0480018606.01.T01:intron 25.0%
! TAGAGTTTGATGAATTTGAT+TGG - Chr4:7282196-7282215 MsG0480018606.01.T01:CDS 25.0%
! TATTCTCTTCAGCAAATAAT+TGG - Chr4:7284379-7284398 MsG0480018606.01.T01:intron 25.0%
! TCAAACTAATGACTTTCTAA+TGG - Chr4:7286620-7286639 MsG0480018606.01.T01:intron 25.0%
! TCATGTAAAATAAACTTTGG+AGG - Chr4:7284746-7284765 MsG0480018606.01.T01:intron 25.0%
! TGATTTCAGAGGTAAAAAAT+TGG + Chr4:7284795-7284814 None:intergenic 25.0%
! TTCAATTACCTATACAACTT+CGG + Chr4:7287596-7287615 None:intergenic 25.0%
! TTCTTGAGATTAAAAACTAC+TGG - Chr4:7285179-7285198 MsG0480018606.01.T01:intron 25.0%
!! AATTTTACTTCCTCCAAAAA+TGG - Chr4:7284814-7284833 MsG0480018606.01.T01:intron 25.0%
!! ATAGATCAATGATTTGAAGT+TGG - Chr4:7282358-7282377 MsG0480018606.01.T01:intron 25.0%
!! ATGCACAAAGTTTGAAATAA+TGG - Chr4:7285945-7285964 MsG0480018606.01.T01:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + Chr4:7284184-7284203 None:intergenic 25.0%
!! ATTTTGAACAGATAGTCATT+TGG - Chr4:7283319-7283338 MsG0480018606.01.T01:intron 25.0%
!! TTTTATGGAGCACAATTAAT+TGG - Chr4:7283676-7283695 MsG0480018606.01.T01:intron 25.0%
!!! AGAAAGAAAGAAAGTATCTT+AGG + Chr4:7281505-7281524 None:intergenic 25.0%
!!! TAATGCTGTTTTTCTTATGA+AGG + Chr4:7283292-7283311 None:intergenic 25.0%
!!! TCTATTCGATTTAGAACTTT+TGG - Chr4:7281747-7281766 MsG0480018606.01.T01:three_prime_UTR 25.0%
!!! TGCTATTTCACAATGTTAAA+TGG - Chr4:7286944-7286963 MsG0480018606.01.T01:intron 25.0%
!!! TTAAAAACTACTGGTTCTTA+TGG - Chr4:7285188-7285207 MsG0480018606.01.T01:intron 25.0%
!!! TTCTAGCTTTGTAAAATCTA+TGG - Chr4:7287061-7287080 MsG0480018606.01.T01:intron 25.0%
!!! TTTTTGCAAAAGGGTATAAT+GGG + Chr4:7281780-7281799 None:intergenic 25.0%
AAACAGATGAAGTGTATGTT+TGG + Chr4:7282855-7282874 None:intergenic 30.0%
AAATATGTTTCGTTAGCCAT+TGG + Chr4:7287564-7287583 None:intergenic 30.0%
AACTATTGTTACCATTCCAA+TGG - Chr4:7287545-7287564 MsG0480018606.01.T01:CDS 30.0%
AACTGATACACACTTAATTG+TGG - Chr4:7283112-7283131 MsG0480018606.01.T01:intron 30.0%
ACTTTGTCGATGAGAAAATT+AGG + Chr4:7283520-7283539 None:intergenic 30.0%
AGTGTAAACCAATTTCATTG+AGG + Chr4:7283249-7283268 None:intergenic 30.0%
ATAATCACTGAAGATCAAGA+CGG - Chr4:7287316-7287335 MsG0480018606.01.T01:intron 30.0%
ATGAAAGAAACTCACGAAAA+AGG + Chr4:7281996-7282015 None:intergenic 30.0%
ATGACGACAAGTATAAGAAA+TGG + Chr4:7284028-7284047 None:intergenic 30.0%
CACAATTAATTGGATCCAAA+AGG - Chr4:7283686-7283705 MsG0480018606.01.T01:intron 30.0%
CAGACAAAAACTAGAAAACA+TGG + Chr4:7283213-7283232 None:intergenic 30.0%
CAGCACTTTGTATTAAATTG+TGG + Chr4:7283848-7283867 None:intergenic 30.0%
CATGTTGAAACATGTTACAT+AGG - Chr4:7282102-7282121 MsG0480018606.01.T01:CDS 30.0%
CATTAAGCTATTATCCAAAC+AGG + Chr4:7285528-7285547 None:intergenic 30.0%
CATTATCTCATTTCAATACC+AGG + Chr4:7286678-7286697 None:intergenic 30.0%
CCTCAAGTTAGAATTAATTC+CGG - Chr4:7282801-7282820 MsG0480018606.01.T01:intron 30.0%
CTATCAGTCAATTATCTAGA+TGG - Chr4:7286749-7286768 MsG0480018606.01.T01:intron 30.0%
GAATCTTTCCAAAGTTTAGA+AGG + Chr4:7287626-7287645 None:intergenic 30.0%
GAGCTAGAAAAATTGTTAGA+AGG - Chr4:7287121-7287140 MsG0480018606.01.T01:intron 30.0%
GGATACATTAATGTGAAAGT+AGG - Chr4:7282557-7282576 MsG0480018606.01.T01:intron 30.0%
GTATGATAAGACATGACAAT+CGG + Chr4:7284927-7284946 None:intergenic 30.0%
GTTAATAAATGAGGAGATAG+AGG + Chr4:7284635-7284654 None:intergenic 30.0%
TAGGTTCGACAATAAATTTG+AGG - Chr4:7282576-7282595 MsG0480018606.01.T01:intron 30.0%
TATGATTCCAAGTAGAATGA+AGG + Chr4:7285318-7285337 None:intergenic 30.0%
TCAATTACCTATACAACTTC+GGG + Chr4:7287595-7287614 None:intergenic 30.0%
TGAAATTAAACTGCCAAACA+AGG - Chr4:7283018-7283037 MsG0480018606.01.T01:intron 30.0%
TGTCCATGTAATATAAGTCT+TGG - Chr4:7283545-7283564 MsG0480018606.01.T01:CDS 30.0%
TTCCTAGATACACATTTAGT+TGG - Chr4:7285244-7285263 MsG0480018606.01.T01:intron 30.0%
TTGTGAAATAGCATCTATAG+TGG + Chr4:7286937-7286956 None:intergenic 30.0%
TTGTGTTCCAAAAACTTGAA+TGG + Chr4:7287871-7287890 None:intergenic 30.0%
! AAATGGAGTCTTTTTGCAAA+AGG + Chr4:7281790-7281809 None:intergenic 30.0%
! AATGGAGTCTTTTTGCAAAA+GGG + Chr4:7281789-7281808 None:intergenic 30.0%
! AATTCTAGAGATGAAGAAGA+GGG - Chr4:7281900-7281919 MsG0480018606.01.T01:CDS 30.0%
! ATAAAGTACCTTCGAGAAAT+GGG - Chr4:7283401-7283420 MsG0480018606.01.T01:CDS 30.0%
! ATTTCATGTGACTTGTACTT+AGG + Chr4:7285888-7285907 None:intergenic 30.0%
! GCTTACGATAGAAATAGTTT+TGG + Chr4:7284352-7284371 None:intergenic 30.0%
! GGAAGTAAAATTGATTTCAG+AGG + Chr4:7284806-7284825 None:intergenic 30.0%
! TAATGGATAGTGTGTTACAA+AGG - Chr4:7287031-7287050 MsG0480018606.01.T01:intron 30.0%
! TATAAAGTACCTTCGAGAAA+TGG - Chr4:7283400-7283419 MsG0480018606.01.T01:CDS 30.0%
! TCAGTAGATAAGCTCTAATA+AGG - Chr4:7285748-7285767 MsG0480018606.01.T01:intron 30.0%
! TGTGCTCCATAAAATTCTTT+TGG + Chr4:7283670-7283689 None:intergenic 30.0%
! TTCTTCAAGATCTTTTCCAA+TGG + Chr4:7285426-7285445 None:intergenic 30.0%
! TTTTTCTTCAGATATGTCTC+TGG - Chr4:7283353-7283372 MsG0480018606.01.T01:CDS 30.0%
!! ACAATACTGCTATTTGGTTT+TGG - Chr4:7287506-7287525 MsG0480018606.01.T01:CDS 30.0%
!! ATATTTGGTTCCATTTTTGG+AGG + Chr4:7284827-7284846 None:intergenic 30.0%
!! CAAAAAGTGTTGTCAAATAG+TGG + Chr4:7286847-7286866 None:intergenic 30.0%
!! CGTATATTTGGTTCCATTTT+TGG + Chr4:7284830-7284849 None:intergenic 30.0%
!! CTATAACTTTGAAACTTCTG+CGG + Chr4:7282781-7282800 None:intergenic 30.0%
!! CTTGTTTTCCTAAACTATCT+TGG - Chr4:7285612-7285631 MsG0480018606.01.T01:intron 30.0%
!! CTTTTTGCAAAAGGGTATAA+TGG + Chr4:7281781-7281800 None:intergenic 30.0%
!! GGAGTACCAAAAGAATTTTA+TGG - Chr4:7283661-7283680 MsG0480018606.01.T01:intron 30.0%
!! TTGATGAATTTGATTGGCTT+AGG - Chr4:7282202-7282221 MsG0480018606.01.T01:CDS 30.0%
AAACAGATGAAGTGCATGTT+TGG + Chr4:7282684-7282703 None:intergenic 35.0%
AAAGCCTAAGTAATCAAGCA+AGG + Chr4:7287648-7287667 None:intergenic 35.0%
AACATTCCTGTGAAAACTAC+AGG + Chr4:7287151-7287170 None:intergenic 35.0%
AAGAAAGAACTAACACTACC+TGG - Chr4:7286657-7286676 MsG0480018606.01.T01:intron 35.0%
AAGCCCTTGATTATTCATGT+CGG - Chr4:7286018-7286037 MsG0480018606.01.T01:CDS 35.0%
AAGCTCTTCCAAGATAGTTT+AGG + Chr4:7285623-7285642 None:intergenic 35.0%
ACAAAAAGAGCAATTCTACG+AGG + Chr4:7281963-7281982 None:intergenic 35.0%
ACAGAAATAGATCCCTTCAA+CGG - Chr4:7286245-7286264 MsG0480018606.01.T01:intron 35.0%
ACATGCAACCTTCTAAACTT+TGG - Chr4:7287615-7287634 MsG0480018606.01.T01:CDS 35.0%
AGCCAACTAAATGTGTATCT+AGG + Chr4:7285249-7285268 None:intergenic 35.0%
ATAAGAAATGGCTGCAATTG+AGG + Chr4:7284016-7284035 None:intergenic 35.0%
ATAAGGTTGAGTATAGTGTG+TGG + Chr4:7281537-7281556 None:intergenic 35.0%
ATACTTGTAGTTGATTGCGA+TGG + Chr4:7283090-7283109 None:intergenic 35.0%
ATACTTGTGTTATGCAGCAA+TGG - Chr4:7285985-7286004 MsG0480018606.01.T01:intron 35.0%
ATGAAATGCGATTAAGACTG+AGG - Chr4:7285901-7285920 MsG0480018606.01.T01:intron 35.0%
CCGCAAGTTAGAATTAATTC+CGG - Chr4:7282630-7282649 MsG0480018606.01.T01:intron 35.0%
CCGGAATTAATTCTAACTTG+AGG + Chr4:7282633-7282652 None:intergenic 35.0%
CCGGAATTAATTCTAACTTG+CGG + Chr4:7282633-7282652 None:intergenic 35.0%
CGATGAGAAAATTAGGAAAC+AGG + Chr4:7283513-7283532 None:intergenic 35.0%
CTTGTTTCCTTCATTCTACT+TGG - Chr4:7285308-7285327 MsG0480018606.01.T01:intron 35.0%
GATCTTCAGTGATTATGTCT+GGG + Chr4:7287312-7287331 None:intergenic 35.0%
GATTCCTTGCTTGATTACTT+AGG - Chr4:7287641-7287660 MsG0480018606.01.T01:CDS 35.0%
GCAACTGCAGAAATTATTCT+TGG + Chr4:7284548-7284567 None:intergenic 35.0%
GGCTATTAATTTACGATCGT+AGG + Chr4:7286329-7286348 None:intergenic 35.0%
GTAGAGATCATCTTGTAAAC+CGG - Chr4:7286080-7286099 MsG0480018606.01.T01:intron 35.0%
GTCTCAGTGTTGTCAAATAA+TGG - Chr4:7285027-7285046 MsG0480018606.01.T01:intron 35.0%
TAAAAAACCTTGACGTGTCA+CGG - Chr4:7283146-7283165 MsG0480018606.01.T01:intron 35.0%
TAAGAAATGGCTGCAATTGA+GGG + Chr4:7284015-7284034 None:intergenic 35.0%
TACACAGTTACACACTGTAA+GGG + Chr4:7286357-7286376 None:intergenic 35.0%
TAGAGATCATCTTGTAAACC+GGG - Chr4:7286081-7286100 MsG0480018606.01.T01:intron 35.0%
TAGCATTTCTTCTATGCCTT+TGG - Chr4:7285501-7285520 MsG0480018606.01.T01:intron 35.0%
TATTTGACAGTGTTGCCAAA+TGG - Chr4:7283765-7283784 MsG0480018606.01.T01:intron 35.0%
TCAGCTAACACTTGATAAGA+AGG + Chr4:7285477-7285496 None:intergenic 35.0%
TCATTCAAAACAGAATCAGG+AGG + Chr4:7281927-7281946 None:intergenic 35.0%
TCTTAGGACAAATGATGCTA+AGG + Chr4:7281489-7281508 None:intergenic 35.0%
TGATCTTCAGTGATTATGTC+TGG + Chr4:7287313-7287332 None:intergenic 35.0%
TGTGCATGTTATATAGGTCA+TGG - Chr4:7283621-7283640 MsG0480018606.01.T01:intron 35.0%
TGTGTATCAGATGTTAATGC+AGG + Chr4:7286465-7286484 None:intergenic 35.0%
TTACACAGTTACACACTGTA+AGG + Chr4:7286358-7286377 None:intergenic 35.0%
TTAGTATGAAGCTATGGATG+TGG + Chr4:7284440-7284459 None:intergenic 35.0%
TTATCCAAAAGCTTCCTTAC+TGG + Chr4:7284078-7284097 None:intergenic 35.0%
TTATCTCAAGCATATGCTAG+TGG - Chr4:7287184-7287203 MsG0480018606.01.T01:intron 35.0%
TTCAGAGTATGTTACCTGTA+GGG + Chr4:7286548-7286567 None:intergenic 35.0%
TTGTGCATGAAAACGACAAA+AGG + Chr4:7285933-7285952 None:intergenic 35.0%
TTTCAGAGTATGTTACCTGT+AGG + Chr4:7286549-7286568 None:intergenic 35.0%
! AACATGCACTTCATCTGTTT+TGG - Chr4:7282684-7282703 MsG0480018606.01.T01:intron 35.0%
! ACATAAAGCAGAGTGCATTT+TGG + Chr4:7286407-7286426 None:intergenic 35.0%
! CATTTTGGACTCAAATACTC+CGG + Chr4:7286392-7286411 None:intergenic 35.0%
! CGACGATTTAAAACCTTGTT+TGG + Chr4:7283034-7283053 None:intergenic 35.0%
! CTTCACAATCAACTCACTTT+TGG + Chr4:7284699-7284718 None:intergenic 35.0%
! GAATTCTAGAGATGAAGAAG+AGG - Chr4:7281899-7281918 MsG0480018606.01.T01:CDS 35.0%
! GTTTTCACAGGAATGTTAAG+CGG - Chr4:7287154-7287173 MsG0480018606.01.T01:intron 35.0%
! TAGAAATGGAGAAGTATGAC+TGG - Chr4:7287449-7287468 MsG0480018606.01.T01:CDS 35.0%
! TTTTCACAGGAATGTTAAGC+GGG - Chr4:7287155-7287174 MsG0480018606.01.T01:intron 35.0%
! TTTTTCTCAAGTGTCCTGTT+TGG - Chr4:7284167-7284186 MsG0480018606.01.T01:CDS 35.0%
!! AGTAGACTTGCTTTTGAATC+CGG + Chr4:7282652-7282671 None:intergenic 35.0%
!! CTGCTTTTGATGGAAGTTAT+TGG - Chr4:7282944-7282963 MsG0480018606.01.T01:intron 35.0%
!! CTTAAAACTTGCTGTCTCTT+AGG - Chr4:7283945-7283964 MsG0480018606.01.T01:intron 35.0%
!! GGAGAATCCATTCAAGTTTT+TGG - Chr4:7287861-7287880 MsG0480018606.01.T01:five_prime_UTR 35.0%
!! TTTGTTGTTAACTTACAGGG+AGG - Chr4:7287099-7287118 MsG0480018606.01.T01:intron 35.0%
!!! AAGGTTTTAAATCGTCGTTG+TGG - Chr4:7283037-7283056 MsG0480018606.01.T01:intron 35.0%
AACAGGAATCCCTGAAGATA+GGG + Chr4:7287266-7287285 None:intergenic 40.0%
AAGAAATGGCTGCAATTGAG+GGG + Chr4:7284014-7284033 None:intergenic 40.0%
AAGGACTTATGTTCACCTGT+TGG + Chr4:7285458-7285477 None:intergenic 40.0%
ACACAGTGAAAGCGAACAAA+CGG - Chr4:7283903-7283922 MsG0480018606.01.T01:intron 40.0%
ACATTTGGGCAACTAGTAAG+TGG - Chr4:7287840-7287859 MsG0480018606.01.T01:five_prime_UTR 40.0%
ACCTTCTGATACCAAGGAAA+AGG + Chr4:7284503-7284522 None:intergenic 40.0%
AGAAAATAGCTGAGCTGAGA+CGG + Chr4:7282757-7282776 None:intergenic 40.0%
AGAAGAAGAATGAACGGTTG+TGG + Chr4:7281706-7281725 None:intergenic 40.0%
AGCCCTTGATTATTCATGTC+GGG - Chr4:7286019-7286038 MsG0480018606.01.T01:CDS 40.0%
ATAATACACGCTTCATCACC+TGG - Chr4:7284584-7284603 MsG0480018606.01.T01:intron 40.0%
ATACTTAGAACCCACCACAT+TGG + Chr4:7285279-7285298 None:intergenic 40.0%
ATATGCTCTTCCTACCAGTA+AGG - Chr4:7284061-7284080 MsG0480018606.01.T01:intron 40.0%
ATCGCGTAAAAACAACGGTT+TGG + Chr4:7285129-7285148 None:intergenic 40.0%
ATGGTTGTGACAACACATGA+AGG - Chr4:7283640-7283659 MsG0480018606.01.T01:intron 40.0%
ATGTAACTTACACCGGTACA+TGG + Chr4:7284950-7284969 None:intergenic 40.0%
ATTGATTGAGATCCCGTTGA+AGG + Chr4:7286261-7286280 None:intergenic 40.0%
ATTGGATATCTCTACACTCC+AGG - Chr4:7287343-7287362 MsG0480018606.01.T01:intron 40.0%
CAGAAATAGATCCCTTCAAC+GGG - Chr4:7286246-7286265 MsG0480018606.01.T01:intron 40.0%
CATGGATCGCGTAAAAACAA+CGG + Chr4:7285134-7285153 None:intergenic 40.0%
CCTTCTGATACCAAGGAAAA+GGG + Chr4:7284502-7284521 None:intergenic 40.0%
CGATGACACCTCAATGAAAT+TGG - Chr4:7283238-7283257 MsG0480018606.01.T01:intron 40.0%
CTGTCAAATACTAGAGGACA+TGG + Chr4:7283755-7283774 None:intergenic 40.0%
GAAACTCACGAAAAAGGTGA+AGG + Chr4:7281990-7282009 None:intergenic 40.0%
GAAGATCAAGACGGCAAAAT+TGG - Chr4:7287325-7287344 MsG0480018606.01.T01:intron 40.0%
GATGAAGCGTGTATTATGTC+AGG + Chr4:7284581-7284600 None:intergenic 40.0%
GATGCTAAGGACTCTATGAT+TGG + Chr4:7281476-7281495 None:intergenic 40.0%
GCAACACTGTCAAATACTAG+AGG + Chr4:7283761-7283780 None:intergenic 40.0%
GGATAGTGTGTTACAAAGGT+TGG - Chr4:7287035-7287054 MsG0480018606.01.T01:intron 40.0%
GTCTTATCATACCCATGTAC+CGG - Chr4:7284935-7284954 MsG0480018606.01.T01:intron 40.0%
GTTGTCAATCGTGGAAATAG+CGG - Chr4:7286776-7286795 MsG0480018606.01.T01:intron 40.0%
TACGCTATAGCTGTATAGTG+CGG + Chr4:7283791-7283810 None:intergenic 40.0%
TACTATTACCAGATCCTCCT+AGG + Chr4:7287914-7287933 None:intergenic 40.0%
TATTATCCAAACAGGGCCAA+AGG + Chr4:7285520-7285539 None:intergenic 40.0%
TATTCTTGGACTAAGTGCCA+AGG + Chr4:7284534-7284553 None:intergenic 40.0%
TGAATAATCAAGGGCTTCTC+CGG + Chr4:7286015-7286034 None:intergenic 40.0%
TGCAAACATACCATAATGCC+AGG + Chr4:7284605-7284624 None:intergenic 40.0%
TGGCTTATAGCGTTATAGAG+TGG - Chr4:7285047-7285066 MsG0480018606.01.T01:intron 40.0%
TGTAACTTACACCGGTACAT+GGG + Chr4:7284949-7284968 None:intergenic 40.0%
TGTTTCGTTAGCCATTGGAA+TGG + Chr4:7287559-7287578 None:intergenic 40.0%
TTACACACTGTAAGGGATCT+CGG + Chr4:7286350-7286369 None:intergenic 40.0%
TTCAACGGGATCTCAATCAA+TGG - Chr4:7286260-7286279 MsG0480018606.01.T01:intron 40.0%
TTGATTGAGATCCCGTTGAA+GGG + Chr4:7286260-7286279 None:intergenic 40.0%
TTTCACAGGAATGTTAAGCG+GGG - Chr4:7287156-7287175 MsG0480018606.01.T01:intron 40.0%
! AAATGGAGAAGTATGACTGG+AGG - Chr4:7287452-7287471 MsG0480018606.01.T01:CDS 40.0%
! AATGGAGAAGTATGACTGGA+GGG - Chr4:7287453-7287472 MsG0480018606.01.T01:CDS 40.0%
! GATCGATGTTAGCAACCTTT+TGG + Chr4:7283704-7283723 None:intergenic 40.0%
! TCTTTTCCAATGGCAACTGA+TGG + Chr4:7285416-7285435 None:intergenic 40.0%
!! AAGATCCGTCTTTGGAACAA+GGG - Chr4:7285840-7285859 MsG0480018606.01.T01:intron 40.0%
!! TTCGTGTGTGTTTGGTAATG+CGG - Chr4:7282450-7282469 MsG0480018606.01.T01:intron 40.0%
!!! TTGGTTTTGGCGCAAGAAAA+AGG - Chr4:7287519-7287538 MsG0480018606.01.T01:CDS 40.0%
AAAAGCCGCGCGTATAGAAA+TGG - Chr4:7287435-7287454 MsG0480018606.01.T01:CDS 45.0%
AAGCAATCGTTGAGATCACC+TGG + Chr4:7287364-7287383 None:intergenic 45.0%
ACAATAGCGATTCGTGCTTC+AGG + Chr4:7286515-7286534 None:intergenic 45.0%
ACCTATACAACTTCGGGAGA+CGG + Chr4:7287589-7287608 None:intergenic 45.0%
ACGCCCGACATGAATAATCA+AGG + Chr4:7286025-7286044 None:intergenic 45.0%
ACTCAAATACTCCGGCAGTA+GGG + Chr4:7286384-7286403 None:intergenic 45.0%
AGAAATGGCTGCAATTGAGG+GGG + Chr4:7284013-7284032 None:intergenic 45.0%
ATCTTCAGGGATTCCTGTTG+TGG - Chr4:7287267-7287286 MsG0480018606.01.T01:intron 45.0%
ATTATTCATGTCGGGCGTCT+TGG - Chr4:7286027-7286046 MsG0480018606.01.T01:CDS 45.0%
CAAAGACGGATCTTGTTAGC+TGG + Chr4:7285834-7285853 None:intergenic 45.0%
CAACACCCTTGTTCCAAAGA+CGG + Chr4:7285848-7285867 None:intergenic 45.0%
CAACAGGAATCCCTGAAGAT+AGG + Chr4:7287267-7287286 None:intergenic 45.0%
CAGCTAACAAGATCCGTCTT+TGG - Chr4:7285832-7285851 MsG0480018606.01.T01:intron 45.0%
CCAAAAGCTTCCTTACTGGT+AGG + Chr4:7284074-7284093 None:intergenic 45.0%
CGAATCGCTATTGTTGGAGA+TGG - Chr4:7286521-7286540 MsG0480018606.01.T01:intron 45.0%
CGCCCGACATGAATAATCAA+GGG + Chr4:7286024-7286043 None:intergenic 45.0%
CTTCTCCATTTCTATACGCG+CGG + Chr4:7287443-7287462 None:intergenic 45.0%
CTTGTTAGCTGGAAATCGAC+AGG + Chr4:7285823-7285842 None:intergenic 45.0%
GAAGCACGAATCGCTATTGT+TGG - Chr4:7286515-7286534 MsG0480018606.01.T01:intron 45.0%
GAATGAACGGTTGTGGAGAT+AGG + Chr4:7281699-7281718 None:intergenic 45.0%
GACAACTTGACCAAGTGTCT+CGG + Chr4:7287236-7287255 None:intergenic 45.0%
GACTTTGCAGTGTCATGGAT+AGG - Chr4:7286486-7286505 MsG0480018606.01.T01:intron 45.0%
GATGGCATTGTTGTCAATCG+TGG - Chr4:7286767-7286786 MsG0480018606.01.T01:intron 45.0%
GCACTATACAGCTATAGCGT+AGG - Chr4:7283790-7283809 MsG0480018606.01.T01:intron 45.0%
GCAGAGTTGAGAGAAACGAT+GGG - Chr4:7287412-7287431 MsG0480018606.01.T01:intron 45.0%
GCTTTGTAGTCGTGTGTGTT+TGG - Chr4:7282319-7282338 MsG0480018606.01.T01:intron 45.0%
GTGGAGATAGGTGAGAGAAA+AGG + Chr4:7281687-7281706 None:intergenic 45.0%
GTTATGCAGCAATGGTGAAC+CGG - Chr4:7285993-7286012 MsG0480018606.01.T01:intron 45.0%
TCTTCAGGGATTCCTGTTGT+GGG - Chr4:7287268-7287287 MsG0480018606.01.T01:intron 45.0%
TGTGGATCGCAGAACAATGA+CGG + Chr4:7283830-7283849 None:intergenic 45.0%
! ACTTGGTCAAGTTGTCTCAG+AGG - Chr4:7287240-7287259 MsG0480018606.01.T01:intron 45.0%
! ATTGCAGCTTCCCTTTTCCT+TGG - Chr4:7284489-7284508 MsG0480018606.01.T01:CDS 45.0%
! CCCTTTTCCTTGGTATCAGA+AGG - Chr4:7284499-7284518 MsG0480018606.01.T01:CDS 45.0%
! CCTACCAGTAAGGAAGCTTT+TGG - Chr4:7284071-7284090 MsG0480018606.01.T01:intron 45.0%
! GATTATGTCTGGGATTCCAC+CGG + Chr4:7287302-7287321 None:intergenic 45.0%
! GCTTTGACTTCGTGTGTGTT+TGG - Chr4:7282442-7282461 MsG0480018606.01.T01:intron 45.0%
!! CAAGATCCGTCTTTGGAACA+AGG - Chr4:7285839-7285858 MsG0480018606.01.T01:intron 45.0%
!!! AGTCGACTTGCTTTTGACTC+CGG + Chr4:7282823-7282842 None:intergenic 45.0%
!!! CTGTCTTCTGCTGCTTTTGA+TGG - Chr4:7282934-7282953 MsG0480018606.01.T01:intron 45.0%
!! TGATTAATAATATTATAATA+AGG + Chr4:7281554-7281573 None:intergenic 5.0%
!!! TGTTTTTTTTTTAAATTAAT+TGG - Chr4:7282077-7282096 MsG0480018606.01.T01:CDS 5.0%
AAATGGCTGCAATTGAGGGG+GGG + Chr4:7284011-7284030 None:intergenic 50.0%
AACTCTGCGTCATGCAACAG+AGG + Chr4:7287400-7287419 None:intergenic 50.0%
AGCTGTATAGTGCGGCCATT+TGG + Chr4:7283783-7283802 None:intergenic 50.0%
ATGACAAGCCTAGGAGGATC+TGG - Chr4:7287903-7287922 MsG0480018606.01.T01:five_prime_UTR 50.0%
CACACGACTTTGCAGTGTCA+TGG - Chr4:7286481-7286500 MsG0480018606.01.T01:intron 50.0%
CCTATACAACTTCGGGAGAC+GGG + Chr4:7287588-7287607 None:intergenic 50.0%
CCTCATCTCCCATTTCTCGA+AGG + Chr4:7283412-7283431 None:intergenic 50.0%
CCTTCGAGAAATGGGAGATG+AGG - Chr4:7283409-7283428 MsG0480018606.01.T01:intron 50.0%
CGCAGAGTTGAGAGAAACGA+TGG - Chr4:7287411-7287430 MsG0480018606.01.T01:intron 50.0%
CGCTTCATCACCTGGCATTA+TGG - Chr4:7284592-7284611 MsG0480018606.01.T01:intron 50.0%
CTAGTGCCATCAGTTGCCAT+TGG - Chr4:7285407-7285426 MsG0480018606.01.T01:intron 50.0%
CTCAAATACTCCGGCAGTAG+GGG + Chr4:7286383-7286402 None:intergenic 50.0%
CTGTGTAATTCCCCTACTGC+CGG - Chr4:7286370-7286389 MsG0480018606.01.T01:intron 50.0%
GAAATGGCTGCAATTGAGGG+GGG + Chr4:7284012-7284031 None:intergenic 50.0%
GACTCAAATACTCCGGCAGT+AGG + Chr4:7286385-7286404 None:intergenic 50.0%
GCTAGTGCAACCAATGTGGT+GGG - Chr4:7285266-7285285 MsG0480018606.01.T01:intron 50.0%
GTTGGCTAGTGCAACCAATG+TGG - Chr4:7285262-7285281 MsG0480018606.01.T01:intron 50.0%
TCCTAGGCTTGTCATGCTCT+TGG + Chr4:7287898-7287917 None:intergenic 50.0%
TCTATGCCTTTGGCCCTGTT+TGG - Chr4:7285511-7285530 MsG0480018606.01.T01:intron 50.0%
TCTCAGAGGCCCTATCTTCA+GGG - Chr4:7287254-7287273 MsG0480018606.01.T01:intron 50.0%
TGGACTAAGTGCCAAGGAGA+GGG + Chr4:7284528-7284547 None:intergenic 50.0%
TTGGACTAAGTGCCAAGGAG+AGG + Chr4:7284529-7284548 None:intergenic 50.0%
TTGTTGGAGATGGACCCTAC+AGG - Chr4:7286531-7286550 MsG0480018606.01.T01:intron 50.0%
! AAGAGCATGACAAGCCTAGG+AGG - Chr4:7287897-7287916 MsG0480018606.01.T01:five_prime_UTR 50.0%
! GCTAAAGTGCTACAGCGTAG+CGG + Chr4:7286814-7286833 None:intergenic 50.0%
! GGCATGCCTGTAGTTTTCAC+AGG - Chr4:7287142-7287161 MsG0480018606.01.T01:intron 50.0%
! TCCAAGAGCATGACAAGCCT+AGG - Chr4:7287894-7287913 MsG0480018606.01.T01:five_prime_UTR 50.0%
!! AGGGGTACCTTCTGATACCA+AGG + Chr4:7284509-7284528 None:intergenic 50.0%
!! GTCGTGTGTGTTTGGTTCTG+CGG - Chr4:7282327-7282346 MsG0480018606.01.T01:intron 50.0%
AATGGCTGCAATTGAGGGGG+GGG + Chr4:7284010-7284029 None:intergenic 55.0%
ATTGCAGCCGTGACACGTCA+AGG + Chr4:7283156-7283175 None:intergenic 55.0%
CCAAGTGTCTCGGACTCTGA+CGG + Chr4:7287226-7287245 None:intergenic 55.0%
CCCGTCTCCCGAAGTTGTAT+AGG - Chr4:7287585-7287604 MsG0480018606.01.T01:CDS 55.0%
GCAGCAGAAGACAGCTGAGA+TGG + Chr4:7282928-7282947 None:intergenic 55.0%
GGACTAAGTGCCAAGGAGAG+GGG + Chr4:7284527-7284546 None:intergenic 55.0%
GGCTAGTGCAACCAATGTGG+TGG - Chr4:7285265-7285284 MsG0480018606.01.T01:intron 55.0%
GTCTCAGAGGCCCTATCTTC+AGG - Chr4:7287253-7287272 MsG0480018606.01.T01:intron 55.0%
!! TCAGAAGGTACCCCTCTCCT+TGG - Chr4:7284514-7284533 MsG0480018606.01.T01:CDS 55.0%
ATGGCTGCAATTGAGGGGGG+GGG + Chr4:7284009-7284028 None:intergenic 60.0%
CCGTCAGAGTCCGAGACACT+TGG - Chr4:7287223-7287242 MsG0480018606.01.T01:intron 60.0%
TGGCTGCAATTGAGGGGGGG+GGG + Chr4:7284008-7284027 None:intergenic 65.0%
! CCTGTTGTGGGAGCACGTGC+CGG - Chr4:7287280-7287299 MsG0480018606.01.T01:intron 65.0%
CCGGCACGTGCTCCCACAAC+AGG + Chr4:7287283-7287302 None:intergenic 70.0%
CTGCAATTGAGGGGGGGGGG+GGG + Chr4:7284005-7284024 None:intergenic 70.0%
GCTGCAATTGAGGGGGGGGG+GGG + Chr4:7284006-7284025 None:intergenic 70.0%
GGCTGCAATTGAGGGGGGGG+GGG + Chr4:7284007-7284026 None:intergenic 70.0%
TGCAATTGAGGGGGGGGGGG+GGG + Chr4:7284004-7284023 None:intergenic 70.0%
! GTTGTGGGAGCACGTGCCGG+TGG - Chr4:7287283-7287302 MsG0480018606.01.T01:intron 70.0%
AATTGAGGGGGGGGGGGGGG+GGG + Chr4:7284001-7284020 None:intergenic 75.0%
CAATTGAGGGGGGGGGGGGG+GGG + Chr4:7284002-7284021 None:intergenic 75.0%
GCAATTGAGGGGGGGGGGGG+GGG + Chr4:7284003-7284022 None:intergenic 75.0%
! ATTGAGGGGGGGGGGGGGGG+GGG + Chr4:7284000-7284019 None:intergenic 80.0%
! TTGAGGGGGGGGGGGGGGGG+GGG + Chr4:7283999-7284018 None:intergenic 85.0%
! GGGGGGGGGGGGGGGGTAGG+AGG + Chr4:7283983-7284002 None:intergenic 90.0%
! TGAGGGGGGGGGGGGGGGGG+GGG + Chr4:7283998-7284017 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + Chr4:7283996-7284015 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG + Chr4:7283997-7284016 None:intergenic 95.0%
! GGGGGGGGGGGGGGGGGGGT+AGG + Chr4:7283986-7284005 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
Chr4 gene 7281456 7287972 7281456 ID=MsG0480018606.01;Name=MsG0480018606.01
Chr4 mRNA 7281456 7287972 7281456 ID=MsG0480018606.01.T01;Parent=MsG0480018606.01;Name=MsG0480018606.01.T01;_AED=0.48;_eAED=0.48;_QI=189|0.87|1|1|1|1|9|366|449
Chr4 exon 7281456 7282311 7281456 ID=MsG0480018606.01.T01:exon:2408;Parent=MsG0480018606.01.T01
Chr4 exon 7282876 7282932 7282876 ID=MsG0480018606.01.T01:exon:2407;Parent=MsG0480018606.01.T01
Chr4 exon 7283349 7283426 7283349 ID=MsG0480018606.01.T01:exon:2406;Parent=MsG0480018606.01.T01
Chr4 exon 7283506 7283593 7283506 ID=MsG0480018606.01.T01:exon:2405;Parent=MsG0480018606.01.T01
Chr4 exon 7283967 7284050 7283967 ID=MsG0480018606.01.T01:exon:2404;Parent=MsG0480018606.01.T01
Chr4 exon 7284134 7284189 7284134 ID=MsG0480018606.01.T01:exon:2403;Parent=MsG0480018606.01.T01
Chr4 exon 7284470 7284543 7284470 ID=MsG0480018606.01.T01:exon:2402;Parent=MsG0480018606.01.T01
Chr4 exon 7285998 7286064 7285998 ID=MsG0480018606.01.T01:exon:2401;Parent=MsG0480018606.01.T01
Chr4 exon 7287428 7287972 7287428 ID=MsG0480018606.01.T01:exon:2400;Parent=MsG0480018606.01.T01
Chr4 five_prime_UTR 7287784 7287972 7287784 ID=MsG0480018606.01.T01:five_prime_utr;Parent=MsG0480018606.01.T01
Chr4 CDS 7287428 7287783 7287428 ID=MsG0480018606.01.T01:cds;Parent=MsG0480018606.01.T01
Chr4 CDS 7285998 7286064 7285998 ID=MsG0480018606.01.T01:cds;Parent=MsG0480018606.01.T01
Chr4 CDS 7284470 7284543 7284470 ID=MsG0480018606.01.T01:cds;Parent=MsG0480018606.01.T01
Chr4 CDS 7284134 7284189 7284134 ID=MsG0480018606.01.T01:cds;Parent=MsG0480018606.01.T01
Chr4 CDS 7283967 7284050 7283967 ID=MsG0480018606.01.T01:cds;Parent=MsG0480018606.01.T01
Chr4 CDS 7283506 7283593 7283506 ID=MsG0480018606.01.T01:cds;Parent=MsG0480018606.01.T01
Chr4 CDS 7283349 7283426 7283349 ID=MsG0480018606.01.T01:cds;Parent=MsG0480018606.01.T01
Chr4 CDS 7282876 7282932 7282876 ID=MsG0480018606.01.T01:cds;Parent=MsG0480018606.01.T01
Chr4 CDS 7281822 7282311 7281822 ID=MsG0480018606.01.T01:cds;Parent=MsG0480018606.01.T01
Chr4 three_prime_UTR 7281456 7281821 7281456 ID=MsG0480018606.01.T01:three_prime_utr;Parent=MsG0480018606.01.T01
Gene Sequence

>MsG0480018606.01.T01

ATGAACTCATCTCTCTCTATAAATTTCTCTCTCTCTCATCCTTTTCTCTCACCTATCTCCACAACCGTTCATTCTTCTTCTTCAAATTTCAACTCTGAAAATTCTATTCGATTTAGAACTTTTGGAGTAAAACCCATTATACCCTTTTGCAAAAAGACTCCATTTTTAAGCTTAGAAAGTTTAAAGAGTGTGAAAAGAAGAAAAAGTTTGAAGCTTGAAGCTACAAAAATGACTATTGATGAAGAAAGTTTGTTGAATTCTAGAGATGAAGAAGAGGGTCCTCCTGATTCTGTTTTGAATGATATACATTCTAAACCTCGTAGAATTGCTCTTTTTGTTGAACCTTCACCTTTTTCATATGTCTCTGGATACAAGAATCGTTTTCAGAATTTTATAAAGTACCTTCGAGAAATGGGAGATGAGGTTTTTGGAGCTCTTATCATTGCAAAGCTTTTGTCTGTTCCGATTGTCATGTCTTATCATACCCATGTACCGGTATACATTCCTAGATACACATTTAGTTGGCTAGTGCAACCAATGTGGTGGGTTCTAAAGTTTTTGCACAGAGCAGCTGATCTAACTCTAGTGCCATCAGTTGCCATTGGAAAAGATCTTGAAGAAGCTAGAGTAACAACAGCTAACAAGATCCGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCAATCCTAAGTACAAGTCACATGAAATGCGATTAAGACTGAGCAATGGTGAACCGGAGAAGCCCTTGATTATTCATGTCGGGCGTCTTGGAGTTGAGAAGAGTTTAGATTTTCTTAAAAGTGTCATGGATAGGCTTCCTGAAGCACGAATCGCTATTGTTGGAGATGGACCCTACAGGGAGGAGCTAGAAAAATTGTTAGAAGGCATGCCTGTAGTTTTCACAGGAATGTTAAGCGGGGAAGAATTATCTCAAGCATATGCTAGTGGCGATGTCTTCATTATGCCGTCAGAGTCCGAGACACTTGGTCAAGTTGTCTCAGAGGCCCTATCTTCAGGGATTCCTGTTGTGGGAGCACGTGCCGGTGGAATCCCAGACATAATCACTGAAGATCAAGACGGCAAAATTGGATATCTCTACACTCCAGGTGATCTCAACGATTGCTTGAGCAAACTAAAACCTCTGTTGCATGACGCAGAGTTGAGAGAAACGATGGGAAAAGCCGCGCGTATAGAAATGGAGAAGTATGACTGGAGGGAAGCAACTAGAACGATTCGCAACGAAAATTACAATACTGCTATTTGGTTTTGGCGCAAGAAAAAGGCTCAACTATTGTTACCATTCCAATGGCTAACGAAACATATTTTCCCGTCTCCCGAAGTTGTATAG

Protein sequence

>MsG0480018606.01.T01

MNSSLSINFSLSHPFLSPISTTVHSSSSNFNSENSIRFRTFGVKPIIPFCKKTPFLSLESLKSVKRRKSLKLEATKMTIDEESLLNSRDEEEGPPDSVLNDIHSKPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWWVLKFLHRAADLTLVPSVAIGKDLEEARVTTANKIRLWNKGVDSESFNPKYKSHEMRLRLSNGEPEKPLIIHVGRLGVEKSLDFLKSVMDRLPEARIAIVGDGPYREELEKLLEGMPVVFTGMLSGEELSQAYASGDVFIMPSESETLGQVVSEALSSGIPVVGARAGGIPDIITEDQDGKIGYLYTPGDLNDCLSKLKPLLHDAELRETMGKAARIEMEKYDWREATRTIRNENYNTAIWFWRKKKAQLLLPFQWLTKHIFPSPEVV*