AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029327.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029327.01.T01 MTR_5g082620 99.407 506 3 0 1 506 1 506 0.0 1047
MsG0580029327.01.T01 MTR_3g070720 74.213 508 123 5 3 506 7 510 0.0 724
MsG0580029327.01.T01 MTR_3g070720 74.141 495 120 5 3 493 7 497 0.0 704
MsG0580029327.01.T01 MTR_3g069280 72.764 492 123 5 17 506 7 489 0.0 676
MsG0580029327.01.T01 MTR_3g070720 72.747 466 119 5 3 464 7 468 0.0 640
MsG0580029327.01.T01 MTR_5g071010 60.274 511 192 7 5 506 3 511 0.0 618
MsG0580029327.01.T01 MTR_5g082590 57.172 495 186 8 24 506 19 499 0.0 565
MsG0580029327.01.T01 MTR_3g070720 71.256 414 111 5 3 412 7 416 0.0 541
MsG0580029327.01.T01 MTR_3g070710 50.612 490 222 8 26 506 27 505 5.18e-167 485
MsG0580029327.01.T01 MTR_5g071040 49.902 509 213 11 3 505 17 489 1.49e-164 478
MsG0580029327.01.T01 MTR_3g070560 50.200 500 229 8 17 506 17 506 2.79e-162 473
MsG0580029327.01.T01 MTR_5g082580 47.784 519 248 9 6 506 11 524 5.45e-159 465
MsG0580029327.01.T01 MTR_3g070560 53.372 341 148 4 168 506 2 333 1.94e-122 365
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029327.01.T01 AT3G08510 66.405 509 157 6 1 506 1 498 0.0 692
MsG0580029327.01.T01 AT3G08510 66.405 509 157 6 1 506 1 498 0.0 692
MsG0580029327.01.T01 AT3G55940 64.648 512 164 7 1 506 1 501 0.0 661
MsG0580029327.01.T01 AT3G08510 61.493 509 153 7 1 506 1 469 0.0 616
MsG0580029327.01.T01 AT3G08510 61.493 509 153 7 1 506 1 469 0.0 616
MsG0580029327.01.T01 AT5G58700 55.922 515 205 12 5 506 9 514 0.0 551
MsG0580029327.01.T01 AT5G58700 55.922 515 205 12 5 506 9 514 0.0 551
MsG0580029327.01.T01 AT2G40116 59.430 456 167 7 58 506 86 530 0.0 546
MsG0580029327.01.T01 AT5G58670 52.871 505 199 5 3 502 2 472 5.38e-180 517
MsG0580029327.01.T01 AT5G58700 62.162 407 147 6 103 506 4 406 9.05e-178 509
MsG0580029327.01.T01 AT5G58690 50.784 510 222 9 5 506 7 495 1.93e-176 509
MsG0580029327.01.T01 AT5G58690 50.784 510 222 9 5 506 7 495 1.93e-176 509
MsG0580029327.01.T01 AT5G58690 52.138 491 206 9 24 506 7 476 6.87e-174 501
MsG0580029327.01.T01 AT4G38530 50.895 503 210 6 4 503 3 471 6.55e-173 499
MsG0580029327.01.T01 AT3G47290 39.401 434 199 11 75 505 76 448 1.26e-87 279
MsG0580029327.01.T01 AT3G47290 39.401 434 199 11 75 505 76 448 2.07e-87 280
MsG0580029327.01.T01 AT3G47220 34.851 505 247 15 13 501 5 443 1.60e-78 255

Find 148 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTATAATCCATTAAT+TGG 0.072901 5:+95340405 MsG0580029327.01.T01:CDS
CTTCGTCGCGTCAGAATTTC+CGG 0.202300 5:+95338725 MsG0580029327.01.T01:CDS
TTCTTAGGTGACTGTATATA+TGG 0.217887 5:+95341194 MsG0580029327.01.T01:intron
CTGGAGTAAGATGGTCTTCT+AGG 0.232724 5:-95338758 None:intergenic
CCATGAATCCACCCAATTAA+TGG 0.241564 5:-95340417 None:intergenic
GCAATTAAACCTTTATATTC+TGG 0.248822 5:-95339564 None:intergenic
TAGATGCTTGAGGTCTATTA+AGG 0.282266 5:+95338695 MsG0580029327.01.T01:CDS
GACCAGTATATATGAAATAA+TGG 0.291133 5:-95338172 None:intergenic
AGGTTTGTTATCCGATTATA+AGG 0.294154 5:+95339380 MsG0580029327.01.T01:CDS
TAAATACAGGTTGGGATTGC+TGG 0.296624 5:+95341391 MsG0580029327.01.T01:intron
CCATTAATTGGGTGGATTCA+TGG 0.301428 5:+95340417 MsG0580029327.01.T01:CDS
CCAAACATGCTTACCTGTTT+CGG 0.306660 5:+95341575 MsG0580029327.01.T01:three_prime_UTR
GCCACTTTGGCTTGAAGATC+TGG 0.311937 5:-95338777 None:intergenic
TCCCATTATTTCATATATAC+TGG 0.316971 5:+95338170 MsG0580029327.01.T01:CDS
CTTACTCTTGCATAGAAATC+TGG 0.318132 5:-95341270 None:intergenic
AGTTGTATTTATCTCCCTTC+TGG 0.319388 5:-95341635 None:intergenic
TGAGTTCCCGCTTACTGTTC+CGG 0.319955 5:+95341488 MsG0580029327.01.T01:three_prime_UTR
TAAGTCCAGCACCCCTTCTA+TGG 0.337792 5:-95336526 None:intergenic
TTCACAGGTAACTTAGCTTT+AGG 0.344189 5:-95341067 None:intergenic
TTGGTTCCATTGTAGGGGTA+TGG 0.346040 5:+95340935 MsG0580029327.01.T01:intron
GTTTCAAGCATTTCCATAGA+AGG 0.351861 5:+95336513 MsG0580029327.01.T01:CDS
CCGAAACAGGTAAGCATGTT+TGG 0.351920 5:-95341575 None:intergenic
AAGGTACTCCTTAGGTGGTT+TGG 0.352592 5:-95339259 None:intergenic
GAGTCAATGCGAGTACCTTT+TGG 0.358619 5:-95340381 None:intergenic
GATAATGTTGATGTTCTTCA+TGG 0.363896 5:+95338314 MsG0580029327.01.T01:CDS
TTAGTCTCATACCTTATAAT+CGG 0.365476 5:-95339391 None:intergenic
TAGATGGTTACTTCAACATT+TGG 0.368286 5:+95339153 MsG0580029327.01.T01:intron
CAAGGGCAATAGAGGATAAC+TGG 0.369854 5:+95341442 MsG0580029327.01.T01:exon
CCAGTCGTTAAGAGAAAATC+TGG 0.371762 5:-95341022 None:intergenic
TTTGGATTTGGTTATGTTTG+TGG 0.373288 5:-95336263 None:intergenic
ATGTCCGAGAAAGATGATTT+TGG 0.376271 5:+95341549 MsG0580029327.01.T01:three_prime_UTR
CCATCTTTAGGGAAACAGTT+TGG 0.381531 5:+95339476 MsG0580029327.01.T01:intron
GTCGCTGCTCAGCTGATTCC+CGG 0.383750 5:-95338210 None:intergenic
TATCTCCCTTCTGGCTATGC+AGG 0.385216 5:-95341626 None:intergenic
CTCTGCAATGCTTTCACGAT+TGG 0.390044 5:-95338245 None:intergenic
GGTCACAATTCCTATCTAAC+CGG 0.390542 5:+95338191 MsG0580029327.01.T01:CDS
TTTGTCTCAAGGTACTCCTT+AGG 0.390852 5:-95339267 None:intergenic
TCCTTCAAGCTTTCTGAGCC+AGG 0.395536 5:-95339192 None:intergenic
GCCACCAAAATCATCTTTCT+CGG 0.396908 5:-95341553 None:intergenic
TCACTGCACGGAAAGGCTTC+AGG 0.402037 5:+95339315 MsG0580029327.01.T01:CDS
CCCCTCCTTAGCTCCGAAAC+AGG 0.415583 5:-95341588 None:intergenic
GAGATCCCGAGCTTCAAGTT+AGG 0.417679 5:+95339360 MsG0580029327.01.T01:CDS
GTTATTGTTGAGGTTGTTGC+TGG 0.425236 5:-95336182 None:intergenic
CTATTGTTTGTGTGTTGTGT+TGG 0.427368 5:-95336222 None:intergenic
CAGCTGATTCCCGGTTAGAT+AGG 0.433100 5:-95338201 None:intergenic
GGTTTAATTGCCATTCATGC+TGG 0.438375 5:+95339576 MsG0580029327.01.T01:CDS
TTTCGACTTCCCAGCATGAA+TGG 0.445147 5:-95339586 None:intergenic
ACCAGTATATATGAAATAAT+GGG 0.446982 5:-95338171 None:intergenic
CATACAGTGTTTGTTTATGC+TGG 0.447970 5:+95336321 MsG0580029327.01.T01:CDS
CAAATTATAATCCATTAATT+GGG 0.455647 5:+95340406 MsG0580029327.01.T01:CDS
TGGTTCCATTGTAGGGGTAT+GGG 0.456000 5:+95340936 MsG0580029327.01.T01:intron
CTCATGGAAAAGAAATTGTC+AGG 0.458333 5:+95339697 MsG0580029327.01.T01:CDS
AATAATGTGTTTGTGCTGTA+AGG 0.459015 5:+95341819 MsG0580029327.01.T01:three_prime_UTR
TCTTCTAGGGTTATTACAAC+CGG 0.465124 5:-95338744 None:intergenic
ACCTGTGAAGACTACTTTGA+AGG 0.465356 5:+95341081 MsG0580029327.01.T01:CDS
AAGAACATCAACATTATCCT+TGG 0.475267 5:-95338309 None:intergenic
AAGTGAGCAACAACTTGAAA+AGG 0.485373 5:+95339665 MsG0580029327.01.T01:CDS
TTAACTAACCTCGGCCACTT+TGG 0.490233 5:-95338790 None:intergenic
TCTTAGGTGACTGTATATAT+GGG 0.491202 5:+95341195 MsG0580029327.01.T01:intron
ACCTGGCTCAGAAAGCTTGA+AGG 0.492584 5:+95339191 MsG0580029327.01.T01:CDS
AAGAGGGTCTTGATCTCTTG+TGG 0.493379 5:-95336377 None:intergenic
AAGCATTGCAGAGAGGTGTA+AGG 0.494457 5:+95338255 MsG0580029327.01.T01:CDS
ACCTGTTTCGGAGCTAAGGA+GGG 0.494741 5:+95341587 MsG0580029327.01.T01:three_prime_UTR
TTTCAAGCATTTCCATAGAA+GGG 0.497387 5:+95336514 MsG0580029327.01.T01:CDS
ACATTATCCTTGGATGCATT+AGG 0.497632 5:-95338299 None:intergenic
GTTGTTGCTGGCAGTGATGA+TGG 0.499210 5:-95336170 None:intergenic
AAATAGATCCGGAGAAAGCT+AGG 0.501601 5:+95339631 MsG0580029327.01.T01:CDS
AGGATAACTGGCTGCCTACA+TGG 0.502775 5:+95341454 MsG0580029327.01.T01:three_prime_UTR
CATTTCCATAGAAGGGGTGC+TGG 0.503533 5:+95336521 MsG0580029327.01.T01:CDS
GCTTACCTGTTTCGGAGCTA+AGG 0.504467 5:+95341583 MsG0580029327.01.T01:three_prime_UTR
GTGGATTCATGGAGCTCAAA+TGG 0.506219 5:+95340428 MsG0580029327.01.T01:CDS
CGTGAACTTCTATACGAAGA+AGG 0.506720 5:-95341518 None:intergenic
AACATAACCACACCCTCCAT+TGG 0.506899 5:-95340993 None:intergenic
ATTATAATCCATTAATTGGG+TGG 0.507171 5:+95340409 MsG0580029327.01.T01:CDS
CCTTGAGACAAAAGAAGTAA+AGG 0.507809 5:+95339278 MsG0580029327.01.T01:CDS
ACAAACCTAACTTGAAGCTC+GGG 0.512099 5:-95339365 None:intergenic
CTTATACGCCTAGCTTTCTC+CGG 0.512925 5:-95339639 None:intergenic
ACCTTCAAAGTAGTCTTCAC+AGG 0.513097 5:-95341082 None:intergenic
ATTCTGAGGGTGTTTCCAAA+AGG 0.513881 5:+95340366 MsG0580029327.01.T01:CDS
GTCTCAAGGTACTCCTTAGG+TGG 0.517428 5:-95339264 None:intergenic
AGGTGTAAGGGTAATTGAGT+TGG 0.519469 5:+95338268 MsG0580029327.01.T01:CDS
GAAAAGGCTGCTATAACTCA+TGG 0.519626 5:+95339681 MsG0580029327.01.T01:CDS
AATGGTTGCATTCAACATGC+AGG 0.520279 5:+95340446 MsG0580029327.01.T01:CDS
ATACGAAGAAGGGCTAGTTC+CGG 0.521787 5:-95341507 None:intergenic
CACGTAGCTCCAGAATATAA+AGG 0.523016 5:+95339555 MsG0580029327.01.T01:CDS
TTCAGGCGACGATGAAGCGT+GGG 0.524653 5:+95339332 MsG0580029327.01.T01:CDS
TGCATGGCTCAAAATAGATC+CGG 0.525462 5:+95339620 MsG0580029327.01.T01:CDS
AACAAACCTAACTTGAAGCT+CGG 0.526863 5:-95339366 None:intergenic
CATGGAATGTTTAGAGCCAA+TGG 0.529913 5:+95340977 MsG0580029327.01.T01:CDS
AGGGGTATGGGAGATCACTT+TGG 0.529986 5:+95340948 MsG0580029327.01.T01:intron
GGATCAAAGACCTCATTGTC+CGG 0.537360 5:-95341046 None:intergenic
TTCTGAGTATTGTTCAAAGA+GGG 0.538272 5:-95336393 None:intergenic
GTGATGTGACTTGTCTGATT+CGG 0.543300 5:-95339532 None:intergenic
GTTTAATTGCCATTCATGCT+GGG 0.544657 5:+95339577 MsG0580029327.01.T01:CDS
TATATCAACCAAACCACCTA+AGG 0.545265 5:+95339251 MsG0580029327.01.T01:CDS
TTTAGAGCCAATGGAGGGTG+TGG 0.547065 5:+95340986 MsG0580029327.01.T01:CDS
AGTTTGTATGTTGTAGATGA+AGG 0.547849 5:+95341767 MsG0580029327.01.T01:three_prime_UTR
TCTTCAAGCCAAAGTGGCCG+AGG 0.552882 5:+95338782 MsG0580029327.01.T01:CDS
GTTTCCCTGCATAGCCAGAA+GGG 0.556734 5:+95341621 MsG0580029327.01.T01:three_prime_UTR
ATCTCCCTTCTGGCTATGCA+GGG 0.556839 5:-95341625 None:intergenic
TGGAGCTCATTAGATGCTTG+AGG 0.557147 5:+95338685 MsG0580029327.01.T01:CDS
AAGCATCTAATGAGCTCCAC+AGG 0.560130 5:-95338681 None:intergenic
AGTTTCCCTGCATAGCCAGA+AGG 0.561034 5:+95341620 MsG0580029327.01.T01:three_prime_UTR
TACCTGTTTCGGAGCTAAGG+AGG 0.563328 5:+95341586 MsG0580029327.01.T01:three_prime_UTR
ATGTTGATGTTCTTCATGGA+AGG 0.566931 5:+95338318 MsG0580029327.01.T01:CDS
TGAGTTTAATGTTATTGTTG+AGG 0.569215 5:-95336192 None:intergenic
CTTGTGGCCTAATGCATCCA+AGG 0.569316 5:+95338292 MsG0580029327.01.T01:CDS
TTCAAGCATTTCCATAGAAG+GGG 0.569805 5:+95336515 MsG0580029327.01.T01:CDS
TGGAGTAAGATGGTCTTCTA+GGG 0.570432 5:-95338757 None:intergenic
GGATGATTCACTGCACGGAA+AGG 0.571504 5:+95339308 MsG0580029327.01.T01:CDS
CTAGTTCCGGAACAGTAAGC+GGG 0.572544 5:-95341494 None:intergenic
TATATGAAATAATGGGACAA+AGG 0.576354 5:-95338164 None:intergenic
TTTCTGAGTATTGTTCAAAG+AGG 0.578422 5:-95336394 None:intergenic
CTTCAGGCGACGATGAAGCG+TGG 0.578988 5:+95339331 MsG0580029327.01.T01:CDS
CGGAAATTCTGACGCGACGA+AGG 0.580991 5:-95338724 None:intergenic
CTTGAAGATCTGGAGTAAGA+TGG 0.581839 5:-95338767 None:intergenic
GGAGACATACTATTTGTACC+TGG 0.581909 5:+95339174 MsG0580029327.01.T01:CDS
TCCAGATCTTCAAGCCAAAG+TGG 0.589376 5:+95338776 MsG0580029327.01.T01:CDS
AGATCACTTTGGCTGATGCA+TGG 0.591647 5:+95340959 MsG0580029327.01.T01:CDS
GTGACTGTATATATGGGAGA+AGG 0.593969 5:+95341201 MsG0580029327.01.T01:CDS
CTGTATATATGGGAGAAGGA+TGG 0.596370 5:+95341205 MsG0580029327.01.T01:CDS
TTACTCAGAAGAATATTCTG+AGG 0.598350 5:+95340352 MsG0580029327.01.T01:CDS
CCTGTTTCGGAGCTAAGGAG+GGG 0.600020 5:+95341588 MsG0580029327.01.T01:three_prime_UTR
TCAAATACCTCGTTCCATGT+AGG 0.605540 5:-95341468 None:intergenic
ATTCATGCTGGGAAGTCGAA+AGG 0.606432 5:+95339588 MsG0580029327.01.T01:CDS
TACTCAGAAGAATATTCTGA+GGG 0.607678 5:+95340353 MsG0580029327.01.T01:CDS
GTACAGTCATTAAGATGTGT+CGG 0.610664 5:+95341734 MsG0580029327.01.T01:three_prime_UTR
GCTAGTTCCGGAACAGTAAG+CGG 0.611031 5:-95341495 None:intergenic
AGCATTGCAGAGAGGTGTAA+GGG 0.613305 5:+95338256 MsG0580029327.01.T01:CDS
AAAGAGGATGATTCACTGCA+CGG 0.615717 5:+95339303 MsG0580029327.01.T01:CDS
GGGTAATTGAGTTGGACTTG+TGG 0.619450 5:+95338276 MsG0580029327.01.T01:CDS
GTGAACTTCTATACGAAGAA+GGG 0.630679 5:-95341517 None:intergenic
CGAAAGGAGGAATAGATGCA+TGG 0.634221 5:+95339604 MsG0580029327.01.T01:CDS
TCAGGCGACGATGAAGCGTG+GGG 0.637108 5:+95339333 MsG0580029327.01.T01:CDS
TAGGACATTGACTACTCCTG+TGG 0.639924 5:+95338665 MsG0580029327.01.T01:intron
GTCACAATTCCTATCTAACC+GGG 0.642865 5:+95338192 MsG0580029327.01.T01:CDS
CATGCTGGGAAGTCGAAAGG+AGG 0.643715 5:+95339591 MsG0580029327.01.T01:CDS
CAATTGAAGGTAAAAGAGCA+AGG 0.649160 5:-95336589 None:intergenic
GGAATGTTTAGAGCCAATGG+AGG 0.657335 5:+95340980 MsG0580029327.01.T01:CDS
ATGTTGTAGATGAAGGATGA+TGG 0.661483 5:+95341774 MsG0580029327.01.T01:three_prime_UTR
AACGACTGGTCCGGACAATG+AGG 0.665060 5:+95341036 MsG0580029327.01.T01:CDS
GAATGTTTAGAGCCAATGGA+GGG 0.667916 5:+95340981 MsG0580029327.01.T01:CDS
CTTTATATTCTGGAGCTACG+TGG 0.670500 5:-95339554 None:intergenic
ACTCTTGCATAGAAATCTGG+AGG 0.672637 5:-95341267 None:intergenic
ACAAAGGTAATGTCATGTCA+TGG 0.690178 5:-95338148 None:intergenic
CTGGCTGCCTACATGGAACG+AGG 0.693778 5:+95341461 MsG0580029327.01.T01:three_prime_UTR
CAGGCGACGATGAAGCGTGG+GGG 0.695861 5:+95339334 MsG0580029327.01.T01:CDS
ATCGTGAAAGCATTGCAGAG+AGG 0.734307 5:+95338248 MsG0580029327.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAAAATTTATTGATTATT+TGG - Chr5:95339836-95339855 None:intergenic 10.0%
!!! ATTCATTATATTTTGTTTAA+GGG + Chr5:95337479-95337498 MsG0580029327.01.T01:intron 10.0%
!!! TTTTTTAATTATTAAAGCAA+TGG - Chr5:95337562-95337581 None:intergenic 10.0%
!! AATATTAAATTAGATACACT+TGG - Chr5:95341137-95341156 None:intergenic 15.0%
!! ATAGTATAATGAAAAAACAA+GGG + Chr5:95341425-95341444 MsG0580029327.01.T01:CDS 15.0%
!! CAAATTATAATCCATTAATT+GGG + Chr5:95340406-95340425 MsG0580029327.01.T01:CDS 15.0%
!! TCAAATTATAATCCATTAAT+TGG + Chr5:95340405-95340424 MsG0580029327.01.T01:CDS 15.0%
!!! ATTATGTCTAAATTTTTAGA+TGG + Chr5:95339137-95339156 MsG0580029327.01.T01:intron 15.0%
!!! ATTTTCAAGAAAATAATTTC+TGG - Chr5:95338612-95338631 None:intergenic 15.0%
!!! CACTTCAATTAATTATTTTA+GGG + Chr5:95339428-95339447 MsG0580029327.01.T01:intron 15.0%
!!! CATTCATTATATTTTGTTTA+AGG + Chr5:95337478-95337497 MsG0580029327.01.T01:intron 15.0%
!!! TGATTTGATAATTTAAATAC+AGG + Chr5:95341378-95341397 MsG0580029327.01.T01:intron 15.0%
!!! TTTACATTTTTTTAATCTCT+AGG + Chr5:95338646-95338665 MsG0580029327.01.T01:intron 15.0%
!!! TTTTTAATATTTACTAATGC+AGG + Chr5:95339981-95340000 MsG0580029327.01.T01:intron 15.0%
!!! TTTTTCTGTTTTTTATTTCA+GGG + Chr5:95337649-95337668 MsG0580029327.01.T01:intron 15.0%
!!! TTTTTTCTGTTTTTTATTTC+AGG + Chr5:95337648-95337667 MsG0580029327.01.T01:intron 15.0%
!! AAATTGTTTATAAGCTATTC+TGG - Chr5:95341343-95341362 None:intergenic 20.0%
!! AATAGAAATTCATGATTGTT+GGG + Chr5:95338528-95338547 MsG0580029327.01.T01:intron 20.0%
!! ACCAGTATATATGAAATAAT+GGG - Chr5:95338174-95338193 None:intergenic 20.0%
!! AGATATCAAATACGAATTAT+AGG - Chr5:95339884-95339903 None:intergenic 20.0%
!! ATCATTATCAAGAAAATAGA+AGG - Chr5:95338388-95338407 None:intergenic 20.0%
!! CATATAAATTTCCATCTTTA+GGG + Chr5:95339465-95339484 MsG0580029327.01.T01:intron 20.0%
!! CATCTAAATTCTTTATATTG+TGG - Chr5:95337726-95337745 None:intergenic 20.0%
!! CTAAACAAAATTGATGTATT+TGG - Chr5:95337251-95337270 None:intergenic 20.0%
!! GAAGTATGATATTACTATAT+TGG - Chr5:95341169-95341188 None:intergenic 20.0%
!! GATAGTATAATGAAAAAACA+AGG + Chr5:95341424-95341443 MsG0580029327.01.T01:CDS 20.0%
!! GATGTATTTAATGTAGAATT+CGG - Chr5:95336991-95337010 None:intergenic 20.0%
!! GATGTATTTGATTCAAAATT+TGG - Chr5:95337357-95337376 None:intergenic 20.0%
!! GTAAAAATGATATTCTGATA+TGG - Chr5:95338575-95338594 None:intergenic 20.0%
!! TAATAGAAATTCATGATTGT+TGG + Chr5:95338527-95338546 MsG0580029327.01.T01:intron 20.0%
!! TAATTCTGACGAAATTAAAA+AGG + Chr5:95339942-95339961 MsG0580029327.01.T01:intron 20.0%
!! TATATGCTAAGTATATACTT+TGG + Chr5:95337418-95337437 MsG0580029327.01.T01:intron 20.0%
!! TGATAATTTAAATACAGGTT+GGG + Chr5:95341383-95341402 MsG0580029327.01.T01:intron 20.0%
!! TTCATTCTATGAAACAAATT+CGG + Chr5:95340097-95340116 MsG0580029327.01.T01:intron 20.0%
!!! AAATAATTTCTGGATACAAT+TGG - Chr5:95338602-95338621 None:intergenic 20.0%
!!! AAGTACATATTGTTTTTTAG+GGG - Chr5:95337453-95337472 None:intergenic 20.0%
!!! ACAAGTACATATTGTTTTTT+AGG - Chr5:95337455-95337474 None:intergenic 20.0%
!!! AGATTTTATCATATTAGATG+TGG - Chr5:95340869-95340888 None:intergenic 20.0%
!!! ATTCAAAATATTTTTCTGTG+TGG + Chr5:95338829-95338848 MsG0580029327.01.T01:intron 20.0%
!!! ATTTTTATTTACCTGATTGT+TGG + Chr5:95340317-95340336 MsG0580029327.01.T01:intron 20.0%
!!! CAAGTACATATTGTTTTTTA+GGG - Chr5:95337454-95337473 None:intergenic 20.0%
!!! GATTTTATCATATTAGATGT+GGG - Chr5:95340868-95340887 None:intergenic 20.0%
!!! GCACTTCAATTAATTATTTT+AGG + Chr5:95339427-95339446 MsG0580029327.01.T01:intron 20.0%
!!! TCTTTAACACATTTTAACAT+TGG + Chr5:95340045-95340064 MsG0580029327.01.T01:intron 20.0%
!!! TTGATAATTTAAATACAGGT+TGG + Chr5:95341382-95341401 MsG0580029327.01.T01:intron 20.0%
!!! TTGTCTTTTATTGTCAATTT+AGG + Chr5:95336848-95336867 MsG0580029327.01.T01:intron 20.0%
!!! TTTCAATTAAGAATCTTTTG+AGG - Chr5:95336442-95336461 None:intergenic 20.0%
!!! TTTTCATTATACTATCACTA+GGG - Chr5:95341420-95341439 None:intergenic 20.0%
!!! TTTTTCATTATACTATCACT+AGG - Chr5:95341421-95341440 None:intergenic 20.0%
!!! TTTTTGCTTATATTTTGCAA+TGG + Chr5:95337393-95337412 MsG0580029327.01.T01:intron 20.0%
! AAAAGAAGTAAAGGAAAAAG+AGG + Chr5:95339287-95339306 MsG0580029327.01.T01:CDS 25.0%
! AAGTACTAGAATTTCAATCA+GGG - Chr5:95340141-95340160 None:intergenic 25.0%
! ACAAAAACTGAGAAAATGAA+AGG - Chr5:95336814-95336833 None:intergenic 25.0%
! ATCTACTTAACCTATCTAAT+AGG + Chr5:95340227-95340246 MsG0580029327.01.T01:intron 25.0%
! ATTATAAATCCTGCTCAAAA+AGG - Chr5:95340744-95340763 None:intergenic 25.0%
! ATTATAATCCATTAATTGGG+TGG + Chr5:95340409-95340428 MsG0580029327.01.T01:CDS 25.0%
! CTCATAAATCATCATTACTA+AGG + Chr5:95338044-95338063 MsG0580029327.01.T01:intron 25.0%
! GACCAGTATATATGAAATAA+TGG - Chr5:95338175-95338194 None:intergenic 25.0%
! GCAATTAAACCTTTATATTC+TGG - Chr5:95339567-95339586 None:intergenic 25.0%
! GCATATAAATTTCCATCTTT+AGG + Chr5:95339464-95339483 MsG0580029327.01.T01:intron 25.0%
! GGTTGAATTGTACATAATTA+AGG - Chr5:95337970-95337989 None:intergenic 25.0%
! TAATGGAGATAAGCTAAAAA+CGG + Chr5:95338990-95339009 MsG0580029327.01.T01:intron 25.0%
! TAGCATAATATCAAAGTTTG+CGG + Chr5:95337802-95337821 MsG0580029327.01.T01:intron 25.0%
! TAGTAATGATGATTTATGAG+CGG - Chr5:95338044-95338063 None:intergenic 25.0%
! TAGTTAACTGAAGTTGTATT+GGG + Chr5:95338806-95338825 MsG0580029327.01.T01:intron 25.0%
! TATGGAAATAAGCTGAAAAA+AGG - Chr5:95341314-95341333 None:intergenic 25.0%
! TATTAGATAGGTTAAGTAGA+TGG - Chr5:95340228-95340247 None:intergenic 25.0%
! TCAATAAACGTTGATGTATT+TGG + Chr5:95337212-95337231 MsG0580029327.01.T01:intron 25.0%
! TCATAGAATGAATTAAGCAT+TGG - Chr5:95340089-95340108 None:intergenic 25.0%
! TCCCATTATTTCATATATAC+TGG + Chr5:95338170-95338189 MsG0580029327.01.T01:CDS 25.0%
! TGAGTTTAATGTTATTGTTG+AGG - Chr5:95336195-95336214 None:intergenic 25.0%
! TTAACCTATCTAATAGGAAA+AGG + Chr5:95340233-95340252 MsG0580029327.01.T01:intron 25.0%
! TTAGTCTCATACCTTATAAT+CGG - Chr5:95339394-95339413 None:intergenic 25.0%
! TTAGTTAACTGAAGTTGTAT+TGG + Chr5:95338805-95338824 MsG0580029327.01.T01:intron 25.0%
! TTCAATTATGTTGTTCTTTG+TGG + Chr5:95336752-95336771 MsG0580029327.01.T01:intron 25.0%
!! AAAACCTTTTCCTATTAGAT+AGG - Chr5:95340240-95340259 None:intergenic 25.0%
!! AAAGTACTAGAATTTCAATC+AGG - Chr5:95340142-95340161 None:intergenic 25.0%
!! AGTCACTTTCTTTAAGAAAT+GGG + Chr5:95337618-95337637 MsG0580029327.01.T01:intron 25.0%
!! CTTCTATTTTCTCAAAATAC+TGG - Chr5:95340595-95340614 None:intergenic 25.0%
!! CTTTTGCTAATATTTTGCAA+CGG + Chr5:95337027-95337046 MsG0580029327.01.T01:intron 25.0%
!! TAAAGAATATTTTCATGACG+AGG + Chr5:95339500-95339519 MsG0580029327.01.T01:CDS 25.0%
!! TATATGAAATAATGGGACAA+AGG - Chr5:95338167-95338186 None:intergenic 25.0%
!! TATCTAATAGGAAAAGGTTT+TGG + Chr5:95340239-95340258 MsG0580029327.01.T01:intron 25.0%
!! TCTATTATTGATTGTGATGT+TGG + Chr5:95340886-95340905 MsG0580029327.01.T01:intron 25.0%
!! TGAAATTCTAGTACTTTTGT+TGG + Chr5:95340145-95340164 MsG0580029327.01.T01:intron 25.0%
!! TTTTTGCTTACATTTTGCAA+CGG + Chr5:95337275-95337294 MsG0580029327.01.T01:intron 25.0%
!!! AAAATGAAAGGCATTAAACA+AGG - Chr5:95336802-95336821 None:intergenic 25.0%
!!! AATCCTCTTTTTAAGTGATT+CGG - Chr5:95339229-95339248 None:intergenic 25.0%
!!! ATATACCTAGTTCTAAATTG+TGG + Chr5:95337681-95337700 MsG0580029327.01.T01:intron 25.0%
!!! ATGATGATTGTGTTTTGTTT+TGG - Chr5:95336284-95336303 None:intergenic 25.0%
!!! ATTGTGTTTTGTTTTGGATT+TGG - Chr5:95336278-95336297 None:intergenic 25.0%
!!! CGGTTTGTTAATTAAAGTTA+TGG - Chr5:95338024-95338043 None:intergenic 25.0%
!!! TATATTTTGTTTAAGGGTGA+AGG + Chr5:95337485-95337504 MsG0580029327.01.T01:intron 25.0%
!!! TATCCCATAGTTCTAAATTA+TGG - Chr5:95337839-95337858 None:intergenic 25.0%
!!! TTCTTTAAGAAATGGGATTT+TGG + Chr5:95337625-95337644 MsG0580029327.01.T01:intron 25.0%
AAAGACCAAAAAACATGACA+AGG - Chr5:95336678-95336697 None:intergenic 30.0%
AAATGCGAAAAAAAATGCAG+CGG - Chr5:95337782-95337801 None:intergenic 30.0%
AAATTAGATACACTTGGATG+AGG - Chr5:95341131-95341150 None:intergenic 30.0%
AAGAACATCAACATTATCCT+TGG - Chr5:95338312-95338331 None:intergenic 30.0%
AATAATGTGTTTGTGCTGTA+AGG + Chr5:95341819-95341838 MsG0580029327.01.T01:three_prime_UTR 30.0%
ACATGGTGAACTATATGTAT+TGG + Chr5:95337511-95337530 MsG0580029327.01.T01:intron 30.0%
AGTTTGTATGTTGTAGATGA+AGG + Chr5:95341767-95341786 MsG0580029327.01.T01:three_prime_UTR 30.0%
ATAAGCACTTAGATACTGTT+TGG - Chr5:95339057-95339076 None:intergenic 30.0%
ATATAATCAAAAGTGAGCCT+AGG + Chr5:95337073-95337092 MsG0580029327.01.T01:intron 30.0%
ATCATACTTCACTTGTTCTT+AGG + Chr5:95341179-95341198 MsG0580029327.01.T01:intron 30.0%
ATTACTTCAATGAGGGTTTA+AGG + Chr5:95337998-95338017 MsG0580029327.01.T01:intron 30.0%
CAAAATACATCAACTTTCCT+AGG - Chr5:95337093-95337112 None:intergenic 30.0%
CGTTCATTTCAACCATAAAA+AGG - Chr5:95339749-95339768 None:intergenic 30.0%
CTGACGAAATTAAAAAGGAA+CGG + Chr5:95339947-95339966 MsG0580029327.01.T01:intron 30.0%
CTTGTACTACATAGTAATTC+AGG + Chr5:95336900-95336919 MsG0580029327.01.T01:intron 30.0%
GATAATGTTGATGTTCTTCA+TGG + Chr5:95338314-95338333 MsG0580029327.01.T01:CDS 30.0%
GTACTGTATCACATTTATTG+TGG + Chr5:95340181-95340200 MsG0580029327.01.T01:intron 30.0%
TAAATGTGATACAGTACAAC+AGG - Chr5:95340178-95340197 None:intergenic 30.0%
TACTCAGAAGAATATTCTGA+GGG + Chr5:95340353-95340372 MsG0580029327.01.T01:CDS 30.0%
TAGATGGTTACTTCAACATT+TGG + Chr5:95339153-95339172 MsG0580029327.01.T01:intron 30.0%
TCAAATAAGTCAATCTTGAC+AGG + Chr5:95339091-95339110 MsG0580029327.01.T01:intron 30.0%
TCATTGAAGTAATACCTTGA+GGG - Chr5:95337991-95338010 None:intergenic 30.0%
TCTTAGGTGACTGTATATAT+GGG + Chr5:95341195-95341214 MsG0580029327.01.T01:intron 30.0%
TTACTCAGAAGAATATTCTG+AGG + Chr5:95340352-95340371 MsG0580029327.01.T01:CDS 30.0%
TTATATTGTGGTTGCAATTG+TGG - Chr5:95337714-95337733 None:intergenic 30.0%
TTCACTCTGCAATAAATAGA+CGG + Chr5:95339916-95339935 MsG0580029327.01.T01:intron 30.0%
TTCTTAGGTGACTGTATATA+TGG + Chr5:95341194-95341213 MsG0580029327.01.T01:intron 30.0%
TTTCAAGCATTTCCATAGAA+GGG + Chr5:95336514-95336533 MsG0580029327.01.T01:CDS 30.0%
! CAGTCACTTTCTTTAAGAAA+TGG + Chr5:95337617-95337636 MsG0580029327.01.T01:intron 30.0%
! CGACCATAATTTAGAACTAT+GGG + Chr5:95337833-95337852 MsG0580029327.01.T01:intron 30.0%
! GATGTATTTGGTTCAACATT+TGG - Chr5:95337239-95337258 None:intergenic 30.0%
! GCGACAAATTCTAGTATTTT+CGG + Chr5:95338435-95338454 MsG0580029327.01.T01:intron 30.0%
! TCAAGGTATTACTTCAATGA+GGG + Chr5:95337991-95338010 MsG0580029327.01.T01:intron 30.0%
! TTCTGAGTATTGTTCAAAGA+GGG - Chr5:95336396-95336415 None:intergenic 30.0%
! TTGCTCTTTTACCTTCAATT+GGG + Chr5:95336591-95336610 MsG0580029327.01.T01:CDS 30.0%
! TTTCTGAGTATTGTTCAAAG+AGG - Chr5:95336397-95336416 None:intergenic 30.0%
! TTTGGATTTGGTTATGTTTG+TGG - Chr5:95336266-95336285 None:intergenic 30.0%
! TTTTTACTTACCCCAATTGA+AGG - Chr5:95336605-95336624 None:intergenic 30.0%
!! AGGTTTGTTATCCGATTATA+AGG + Chr5:95339380-95339399 MsG0580029327.01.T01:CDS 30.0%
!! TTTCTAGTGAGTCCTTTTTA+TGG + Chr5:95339734-95339753 MsG0580029327.01.T01:intron 30.0%
!!! AAGAATCTTTTGAGGTTTGA+AGG - Chr5:95336434-95336453 None:intergenic 30.0%
!!! AAGTTAGTTTTCATTGTGCT+TGG + Chr5:95340916-95340935 MsG0580029327.01.T01:intron 30.0%
!!! ATCCTCTTTTTAAGTGATTC+GGG - Chr5:95339228-95339247 None:intergenic 30.0%
!!! TGTGTTTTTTGTTGTATTCC+AGG + Chr5:95338121-95338140 MsG0580029327.01.T01:intron 30.0%
AACAAACCTAACTTGAAGCT+CGG - Chr5:95339369-95339388 None:intergenic 35.0%
AAGTGAGCAACAACTTGAAA+AGG + Chr5:95339665-95339684 MsG0580029327.01.T01:CDS 35.0%
ACAAAGGTAATGTCATGTCA+TGG - Chr5:95338151-95338170 None:intergenic 35.0%
ACATTATCCTTGGATGCATT+AGG - Chr5:95338302-95338321 None:intergenic 35.0%
AGGCGAGTAAAGTATAAAAG+TGG - Chr5:95338368-95338387 None:intergenic 35.0%
AGTTGTATTTATCTCCCTTC+TGG - Chr5:95341638-95341657 None:intergenic 35.0%
ATAACCACAAACTCTGTCAT+TGG - Chr5:95340015-95340034 None:intergenic 35.0%
ATACTGTTTGGAAGAGCTTA+TGG - Chr5:95339045-95339064 None:intergenic 35.0%
ATGTTGATGTTCTTCATGGA+AGG + Chr5:95338318-95338337 MsG0580029327.01.T01:CDS 35.0%
ATGTTGTAGATGAAGGATGA+TGG + Chr5:95341774-95341793 MsG0580029327.01.T01:three_prime_UTR 35.0%
CAACTTCAGTTAACTAACCT+CGG - Chr5:95338802-95338821 None:intergenic 35.0%
CAATTGAAGGTAAAAGAGCA+AGG - Chr5:95336592-95336611 None:intergenic 35.0%
CATACAGTGTTTGTTTATGC+TGG + Chr5:95336321-95336340 MsG0580029327.01.T01:CDS 35.0%
CCTTGAGACAAAAGAAGTAA+AGG + Chr5:95339278-95339297 MsG0580029327.01.T01:CDS 35.0%
CTATTGTTTGTGTGTTGTGT+TGG - Chr5:95336225-95336244 None:intergenic 35.0%
CTCATGGAAAAGAAATTGTC+AGG + Chr5:95339697-95339716 MsG0580029327.01.T01:CDS 35.0%
CTCATTGAAGTAATACCTTG+AGG - Chr5:95337992-95338011 None:intergenic 35.0%
CTTAAAACGCCAATTAACAG+AGG - Chr5:95339799-95339818 None:intergenic 35.0%
CTTACTCTTGCATAGAAATC+TGG - Chr5:95341273-95341292 None:intergenic 35.0%
GAACTATGGGATATACCATA+TGG + Chr5:95337846-95337865 MsG0580029327.01.T01:intron 35.0%
GATAAGCTAAAAACGGCTTA+TGG + Chr5:95338997-95339016 MsG0580029327.01.T01:intron 35.0%
GGTTAAGTTAACACTAGTAG+AGG + Chr5:95340826-95340845 MsG0580029327.01.T01:intron 35.0%
GTACAGTCATTAAGATGTGT+CGG + Chr5:95341734-95341753 MsG0580029327.01.T01:three_prime_UTR 35.0%
GTCTTACTACCTCTGTTAAT+TGG + Chr5:95339787-95339806 MsG0580029327.01.T01:intron 35.0%
GTGAACTTCTATACGAAGAA+GGG - Chr5:95341520-95341539 None:intergenic 35.0%
GTGATAGTTGAAATATGAGC+CGG + Chr5:95340717-95340736 MsG0580029327.01.T01:intron 35.0%
GTTGACCAAAAAACATGACA+AGG - Chr5:95336711-95336730 None:intergenic 35.0%
GTTTAATTGCCATTCATGCT+GGG + Chr5:95339577-95339596 MsG0580029327.01.T01:CDS 35.0%
GTTTCAAGCATTTCCATAGA+AGG + Chr5:95336513-95336532 MsG0580029327.01.T01:CDS 35.0%
TAACCACAAACTCTGTCATT+GGG - Chr5:95340014-95340033 None:intergenic 35.0%
TAGATGCTTGAGGTCTATTA+AGG + Chr5:95338695-95338714 MsG0580029327.01.T01:CDS 35.0%
TATACCATATGGCATCACAT+TGG + Chr5:95337857-95337876 MsG0580029327.01.T01:intron 35.0%
TATATCAACCAAACCACCTA+AGG + Chr5:95339251-95339270 MsG0580029327.01.T01:CDS 35.0%
TATGTACAATTCAACCCTCA+AGG + Chr5:95337974-95337993 MsG0580029327.01.T01:intron 35.0%
TCACTCTGCAATAAATAGAC+GGG + Chr5:95339917-95339936 MsG0580029327.01.T01:intron 35.0%
TCAGGGAAATAGAATACAGA+AGG - Chr5:95340124-95340143 None:intergenic 35.0%
TGAAAAAACAAGGGCAATAG+AGG + Chr5:95341434-95341453 MsG0580029327.01.T01:CDS 35.0%
TGGTCAACTGAATCTGTATT+TGG + Chr5:95336723-95336742 MsG0580029327.01.T01:intron 35.0%
TTCAAGCATTTCCATAGAAG+GGG + Chr5:95336515-95336534 MsG0580029327.01.T01:CDS 35.0%
TTGCAACAAAATCGCAATTG+CGG + Chr5:95337750-95337769 MsG0580029327.01.T01:intron 35.0%
TTTAAGGGTGAAGGTTAACA+TGG + Chr5:95337494-95337513 MsG0580029327.01.T01:intron 35.0%
! AACTTTGATCTAAAGCGTCA+GGG + Chr5:95340658-95340677 MsG0580029327.01.T01:intron 35.0%
! ATGTCCGAGAAAGATGATTT+TGG + Chr5:95341549-95341568 MsG0580029327.01.T01:three_prime_UTR 35.0%
! ATTTTTGCTGCAATTCATCC+AGG - Chr5:95338415-95338434 None:intergenic 35.0%
! CCTTTACTTCTTTTGTCTCA+AGG - Chr5:95339281-95339300 None:intergenic 35.0%
! CTCAAGGTATTACTTCAATG+AGG + Chr5:95337990-95338009 MsG0580029327.01.T01:intron 35.0%
! CTCTGTTAATTGGCGTTTTA+AGG + Chr5:95339797-95339816 MsG0580029327.01.T01:intron 35.0%
! CTTGCTCTTTTACCTTCAAT+TGG + Chr5:95336590-95336609 MsG0580029327.01.T01:CDS 35.0%
! GAAGACTACTTTGAAGGTAA+GGG + Chr5:95341087-95341106 MsG0580029327.01.T01:intron 35.0%
! GCGACCATAATTTAGAACTA+TGG + Chr5:95337832-95337851 MsG0580029327.01.T01:intron 35.0%
! GTTCACACTTTACACACTTT+TGG + Chr5:95337914-95337933 MsG0580029327.01.T01:intron 35.0%
! TGAAGACTACTTTGAAGGTA+AGG + Chr5:95341086-95341105 MsG0580029327.01.T01:intron 35.0%
! TGCTCTTTTACCTTCAATTG+GGG + Chr5:95336592-95336611 MsG0580029327.01.T01:CDS 35.0%
! TTCACAGGTAACTTAGCTTT+AGG - Chr5:95341070-95341089 None:intergenic 35.0%
!! TCTTCTAGGGTTATTACAAC+CGG - Chr5:95338747-95338766 None:intergenic 35.0%
!! TTCTTGATAATGATGTCACC+TGG + Chr5:95338394-95338413 MsG0580029327.01.T01:intron 35.0%
!!! CTGAACCTTGTCATGTTTTT+TGG + Chr5:95336670-95336689 MsG0580029327.01.T01:intron 35.0%
!!! GCTGTTTTTATAACCTAACC+TGG + Chr5:95338962-95338981 MsG0580029327.01.T01:intron 35.0%
!!! TTTTTAAGTGATTCGGGAGA+AGG - Chr5:95339222-95339241 None:intergenic 35.0%
!!! TTTTTATTTCAGGGCATTGC+AGG + Chr5:95337658-95337677 MsG0580029327.01.T01:intron 35.0%
AAAGAGGATGATTCACTGCA+CGG + Chr5:95339303-95339322 MsG0580029327.01.T01:CDS 40.0%
AAAGCCAATGTGATGCCATA+TGG - Chr5:95337864-95337883 None:intergenic 40.0%
AAATAGATCCGGAGAAAGCT+AGG + Chr5:95339631-95339650 MsG0580029327.01.T01:CDS 40.0%
AAATCCTGCTCAAAAAGGAC+CGG - Chr5:95340739-95340758 None:intergenic 40.0%
AACCTAACCTGGAGAACTAA+TGG + Chr5:95338973-95338992 MsG0580029327.01.T01:intron 40.0%
AATGGTTGCATTCAACATGC+AGG + Chr5:95340446-95340465 MsG0580029327.01.T01:CDS 40.0%
ACAAACCTAACTTGAAGCTC+GGG - Chr5:95339368-95339387 None:intergenic 40.0%
ACCTGTGAAGACTACTTTGA+AGG + Chr5:95341081-95341100 MsG0580029327.01.T01:CDS 40.0%
ACCTTCAAAGTAGTCTTCAC+AGG - Chr5:95341085-95341104 None:intergenic 40.0%
ACTCTTGCATAGAAATCTGG+AGG - Chr5:95341270-95341289 None:intergenic 40.0%
AGGTGTAAGGGTAATTGAGT+TGG + Chr5:95338268-95338287 MsG0580029327.01.T01:CDS 40.0%
ATTGTGCTTGGTTCCATTGT+AGG + Chr5:95340928-95340947 MsG0580029327.01.T01:intron 40.0%
CACGTAGCTCCAGAATATAA+AGG + Chr5:95339555-95339574 MsG0580029327.01.T01:CDS 40.0%
CACTCTGCAATAAATAGACG+GGG + Chr5:95339918-95339937 MsG0580029327.01.T01:intron 40.0%
CCAAACATGCTTACCTGTTT+CGG + Chr5:95341575-95341594 MsG0580029327.01.T01:three_prime_UTR 40.0%
CCAAACTGTTTCCCTAAAGA+TGG - Chr5:95339479-95339498 None:intergenic 40.0%
CCAGTCGTTAAGAGAAAATC+TGG - Chr5:95341025-95341044 None:intergenic 40.0%
CCATGAATCCACCCAATTAA+TGG - Chr5:95340420-95340439 None:intergenic 40.0%
CGTGAACTTCTATACGAAGA+AGG - Chr5:95341521-95341540 None:intergenic 40.0%
CTCCCGAATCACTTAAAAAG+AGG + Chr5:95339223-95339242 MsG0580029327.01.T01:CDS 40.0%
CTGTATATATGGGAGAAGGA+TGG + Chr5:95341205-95341224 MsG0580029327.01.T01:CDS 40.0%
CTTCTGAGTAAACCTATAGC+AGG - Chr5:95340343-95340362 None:intergenic 40.0%
GAAAAGGCTGCTATAACTCA+TGG + Chr5:95339681-95339700 MsG0580029327.01.T01:CDS 40.0%
GCAGTCATATATGTCACTGT+TGG + Chr5:95340624-95340643 MsG0580029327.01.T01:intron 40.0%
GCCACCAAAATCATCTTTCT+CGG - Chr5:95341556-95341575 None:intergenic 40.0%
GGAGACATACTATTTGTACC+TGG + Chr5:95339174-95339193 MsG0580029327.01.T01:CDS 40.0%
GGTCACAATTCCTATCTAAC+CGG + Chr5:95338191-95338210 MsG0580029327.01.T01:CDS 40.0%
GGTTTAATTGCCATTCATGC+TGG + Chr5:95339576-95339595 MsG0580029327.01.T01:CDS 40.0%
GTCACAATTCCTATCTAACC+GGG + Chr5:95338192-95338211 MsG0580029327.01.T01:CDS 40.0%
GTGACTGTATATATGGGAGA+AGG + Chr5:95341201-95341220 MsG0580029327.01.T01:CDS 40.0%
GTTATTGTTGAGGTTGTTGC+TGG - Chr5:95336185-95336204 None:intergenic 40.0%
TAGCACTTAGTAGCTGAAGA+GGG - Chr5:95340483-95340502 None:intergenic 40.0%
TATATGTCACTGTTGGACAC+TGG + Chr5:95340631-95340650 MsG0580029327.01.T01:intron 40.0%
TATCCCAATGACAGAGTTTG+TGG + Chr5:95340008-95340027 MsG0580029327.01.T01:intron 40.0%
TCAAATACCTCGTTCCATGT+AGG - Chr5:95341471-95341490 None:intergenic 40.0%
TGCATGGCTCAAAATAGATC+CGG + Chr5:95339620-95339639 MsG0580029327.01.T01:CDS 40.0%
TGGAGTAAGATGGTCTTCTA+GGG - Chr5:95338760-95338779 None:intergenic 40.0%
TTAGCACTTAGTAGCTGAAG+AGG - Chr5:95340484-95340503 None:intergenic 40.0%
TTGTGCTTGGTTCCATTGTA+GGG + Chr5:95340929-95340948 MsG0580029327.01.T01:intron 40.0%
! AAGCTATTCTGGAGAGCTTA+TGG - Chr5:95341332-95341351 None:intergenic 40.0%
! CAACTTTGATCTAAAGCGTC+AGG + Chr5:95340657-95340676 MsG0580029327.01.T01:intron 40.0%
! CATGGAATGTTTAGAGCCAA+TGG + Chr5:95340977-95340996 MsG0580029327.01.T01:CDS 40.0%
! CCAGATTTTCTCTTAACGAC+TGG + Chr5:95341022-95341041 MsG0580029327.01.T01:CDS 40.0%
! CCATCTTTAGGGAAACAGTT+TGG + Chr5:95339476-95339495 MsG0580029327.01.T01:intron 40.0%
! CCATTAATTGGGTGGATTCA+TGG + Chr5:95340417-95340436 MsG0580029327.01.T01:CDS 40.0%
! CTATATGTATTGGTCCATCG+CGG + Chr5:95337521-95337540 MsG0580029327.01.T01:intron 40.0%
! CTTATCTCCATTAGTTCTCC+AGG - Chr5:95338983-95339002 None:intergenic 40.0%
! CTTGAAGATCTGGAGTAAGA+TGG - Chr5:95338770-95338789 None:intergenic 40.0%
! GAATGTTTAGAGCCAATGGA+GGG + Chr5:95340981-95341000 MsG0580029327.01.T01:CDS 40.0%
! GTGATGTGACTTGTCTGATT+CGG - Chr5:95339535-95339554 None:intergenic 40.0%
! GTGGACCACAATTTAGAACT+AGG - Chr5:95337689-95337708 None:intergenic 40.0%
! TAAATACAGGTTGGGATTGC+TGG + Chr5:95341391-95341410 MsG0580029327.01.T01:intron 40.0%
! TCCGAGAAAGATGATTTTGG+TGG + Chr5:95341552-95341571 MsG0580029327.01.T01:three_prime_UTR 40.0%
! TTTGTCTCAAGGTACTCCTT+AGG - Chr5:95339270-95339289 None:intergenic 40.0%
!! ATAGTAGTCTTGTCAAGCAC+TGG + Chr5:95340523-95340542 MsG0580029327.01.T01:intron 40.0%
!! ATTCTGAGGGTGTTTCCAAA+AGG + Chr5:95340366-95340385 MsG0580029327.01.T01:CDS 40.0%
!! CTAGTATTTTCGGTGCAATC+TGG + Chr5:95338445-95338464 MsG0580029327.01.T01:intron 40.0%
!! CTTTATATTCTGGAGCTACG+TGG - Chr5:95339557-95339576 None:intergenic 40.0%
!! GTTTGTATTTGTGCCGTTTC+TGG - Chr5:95340557-95340576 None:intergenic 40.0%
!! TTTTCTCTTAACGACTGGTC+CGG + Chr5:95341027-95341046 MsG0580029327.01.T01:CDS 40.0%
!!! TATTTTTGAGTTCACCGCGA+TGG - Chr5:95337538-95337557 None:intergenic 40.0%
AACATAACCACACCCTCCAT+TGG - Chr5:95340996-95341015 None:intergenic 45.0%
AAGAGGGTCTTGATCTCTTG+TGG - Chr5:95336380-95336399 None:intergenic 45.0%
AAGCATCTAATGAGCTCCAC+AGG - Chr5:95338684-95338703 None:intergenic 45.0%
AGATCACTTTGGCTGATGCA+TGG + Chr5:95340959-95340978 MsG0580029327.01.T01:CDS 45.0%
ATTCATGCTGGGAAGTCGAA+AGG + Chr5:95339588-95339607 MsG0580029327.01.T01:CDS 45.0%
CAAGGGCAATAGAGGATAAC+TGG + Chr5:95341442-95341461 MsG0580029327.01.T01:exon 45.0%
CCGAAACAGGTAAGCATGTT+TGG - Chr5:95341578-95341597 None:intergenic 45.0%
CGAAAGGAGGAATAGATGCA+TGG + Chr5:95339604-95339623 MsG0580029327.01.T01:CDS 45.0%
CTCTGCAATGCTTTCACGAT+TGG - Chr5:95338248-95338267 None:intergenic 45.0%
CTGGAGTAAGATGGTCTTCT+AGG - Chr5:95338761-95338780 None:intergenic 45.0%
GGATCAAAGACCTCATTGTC+CGG - Chr5:95341049-95341068 None:intergenic 45.0%
GTGGATTCATGGAGCTCAAA+TGG + Chr5:95340428-95340447 MsG0580029327.01.T01:CDS 45.0%
TCCAGATCTTCAAGCCAAAG+TGG + Chr5:95338776-95338795 MsG0580029327.01.T01:CDS 45.0%
TGGAGCTCATTAGATGCTTG+AGG + Chr5:95338685-95338704 MsG0580029327.01.T01:CDS 45.0%
TGTGCTTGGTTCCATTGTAG+GGG + Chr5:95340930-95340949 MsG0580029327.01.T01:intron 45.0%
TGTGGTTGCAATTGTGGTTG+TGG - Chr5:95337708-95337727 None:intergenic 45.0%
TTAACTAACCTCGGCCACTT+TGG - Chr5:95338793-95338812 None:intergenic 45.0%
TTCACGCAAGTTACGATGTG+AGG + Chr5:95340805-95340824 MsG0580029327.01.T01:intron 45.0%
TTGGTTCCATTGTAGGGGTA+TGG + Chr5:95340935-95340954 MsG0580029327.01.T01:intron 45.0%
TTTCGACTTCCCAGCATGAA+TGG - Chr5:95339589-95339608 None:intergenic 45.0%
! AAGCATTGCAGAGAGGTGTA+AGG + Chr5:95338255-95338274 MsG0580029327.01.T01:CDS 45.0%
! AAGGTACTCCTTAGGTGGTT+TGG - Chr5:95339262-95339281 None:intergenic 45.0%
! ACTGGCTTAGACACCAGAAA+CGG + Chr5:95340541-95340560 MsG0580029327.01.T01:intron 45.0%
! AGCATTGCAGAGAGGTGTAA+GGG + Chr5:95338256-95338275 MsG0580029327.01.T01:CDS 45.0%
! CTCCATTAGTTCTCCAGGTT+AGG - Chr5:95338978-95338997 None:intergenic 45.0%
! CTTATACGCCTAGCTTTCTC+CGG - Chr5:95339642-95339661 None:intergenic 45.0%
! GAGTCAATGCGAGTACCTTT+TGG - Chr5:95340384-95340403 None:intergenic 45.0%
! GGAATGTTTAGAGCCAATGG+AGG + Chr5:95340980-95340999 MsG0580029327.01.T01:CDS 45.0%
! TAGGACATTGACTACTCCTG+TGG + Chr5:95338665-95338684 MsG0580029327.01.T01:intron 45.0%
! TGGTTCCATTGTAGGGGTAT+GGG + Chr5:95340936-95340955 MsG0580029327.01.T01:intron 45.0%
!! ATACGAAGAAGGGCTAGTTC+CGG - Chr5:95341510-95341529 None:intergenic 45.0%
!! ATCGTGAAAGCATTGCAGAG+AGG + Chr5:95338248-95338267 MsG0580029327.01.T01:CDS 45.0%
!! GGGTAATTGAGTTGGACTTG+TGG + Chr5:95338276-95338295 MsG0580029327.01.T01:CDS 45.0%
ACCTGGCTCAGAAAGCTTGA+AGG + Chr5:95339191-95339210 MsG0580029327.01.T01:CDS 50.0%
ACCTGTTTCGGAGCTAAGGA+GGG + Chr5:95341587-95341606 MsG0580029327.01.T01:three_prime_UTR 50.0%
AGGATAACTGGCTGCCTACA+TGG + Chr5:95341454-95341473 MsG0580029327.01.T01:three_prime_UTR 50.0%
AGTTTCCCTGCATAGCCAGA+AGG + Chr5:95341620-95341639 MsG0580029327.01.T01:three_prime_UTR 50.0%
ATGTCATGTCATGGTGCACC+TGG - Chr5:95338142-95338161 None:intergenic 50.0%
CCTATAGCAGGCCAACAATC+AGG - Chr5:95340331-95340350 None:intergenic 50.0%
CTAGTTCCGGAACAGTAAGC+GGG - Chr5:95341497-95341516 None:intergenic 50.0%
CTTCGTCGCGTCAGAATTTC+CGG + Chr5:95338725-95338744 MsG0580029327.01.T01:CDS 50.0%
CTTGTGGCCTAATGCATCCA+AGG + Chr5:95338292-95338311 MsG0580029327.01.T01:CDS 50.0%
GATCTCCCATACCCCTACAA+TGG - Chr5:95340944-95340963 None:intergenic 50.0%
GCTAGTTCCGGAACAGTAAG+CGG - Chr5:95341498-95341517 None:intergenic 50.0%
GCTTACCTGTTTCGGAGCTA+AGG + Chr5:95341583-95341602 MsG0580029327.01.T01:three_prime_UTR 50.0%
GGATGATTCACTGCACGGAA+AGG + Chr5:95339308-95339327 MsG0580029327.01.T01:CDS 50.0%
GTTTCCCTGCATAGCCAGAA+GGG + Chr5:95341621-95341640 MsG0580029327.01.T01:three_prime_UTR 50.0%
TAAGTCCAGCACCCCTTCTA+TGG - Chr5:95336529-95336548 None:intergenic 50.0%
TACCTGTTTCGGAGCTAAGG+AGG + Chr5:95341586-95341605 MsG0580029327.01.T01:three_prime_UTR 50.0%
TCCTTCAAGCTTTCTGAGCC+AGG - Chr5:95339195-95339214 None:intergenic 50.0%
TGAGTTCCCGCTTACTGTTC+CGG + Chr5:95341488-95341507 MsG0580029327.01.T01:three_prime_UTR 50.0%
! AGGGGTATGGGAGATCACTT+TGG + Chr5:95340948-95340967 MsG0580029327.01.T01:intron 50.0%
! ATCTCCCTTCTGGCTATGCA+GGG - Chr5:95341628-95341647 None:intergenic 50.0%
! CAGCTGATTCCCGGTTAGAT+AGG - Chr5:95338204-95338223 None:intergenic 50.0%
! CATTTCCATAGAAGGGGTGC+TGG + Chr5:95336521-95336540 MsG0580029327.01.T01:CDS 50.0%
! CCTGATTGTTGGCCTGCTAT+AGG + Chr5:95340328-95340347 MsG0580029327.01.T01:intron 50.0%
! GAGATCCCGAGCTTCAAGTT+AGG + Chr5:95339360-95339379 MsG0580029327.01.T01:CDS 50.0%
! GTCTCAAGGTACTCCTTAGG+TGG - Chr5:95339267-95339286 None:intergenic 50.0%
! TATCTCCCTTCTGGCTATGC+AGG - Chr5:95341629-95341648 None:intergenic 50.0%
! TTTAGAGCCAATGGAGGGTG+TGG + Chr5:95340986-95341005 MsG0580029327.01.T01:CDS 50.0%
!! GCCACTTTGGCTTGAAGATC+TGG - Chr5:95338780-95338799 None:intergenic 50.0%
CATGCTGGGAAGTCGAAAGG+AGG + Chr5:95339591-95339610 MsG0580029327.01.T01:CDS 55.0%
CCTGTTTCGGAGCTAAGGAG+GGG + Chr5:95341588-95341607 MsG0580029327.01.T01:three_prime_UTR 55.0%
CGGAAATTCTGACGCGACGA+AGG - Chr5:95338727-95338746 None:intergenic 55.0%
TCACTGCACGGAAAGGCTTC+AGG + Chr5:95339315-95339334 MsG0580029327.01.T01:CDS 55.0%
TCTTCAAGCCAAAGTGGCCG+AGG + Chr5:95338782-95338801 MsG0580029327.01.T01:CDS 55.0%
TTCAGGCGACGATGAAGCGT+GGG + Chr5:95339332-95339351 MsG0580029327.01.T01:CDS 55.0%
! AACGACTGGTCCGGACAATG+AGG + Chr5:95341036-95341055 MsG0580029327.01.T01:CDS 55.0%
! CTAAAGCGTCAGGGCGACAT+AGG + Chr5:95340667-95340686 MsG0580029327.01.T01:intron 55.0%
!! TGAGCCGGTCCTTTTTGAGC+AGG + Chr5:95340732-95340751 MsG0580029327.01.T01:intron 55.0%
CCCCTCCTTAGCTCCGAAAC+AGG - Chr5:95341591-95341610 None:intergenic 60.0%
CTGGCTGCCTACATGGAACG+AGG + Chr5:95341461-95341480 MsG0580029327.01.T01:three_prime_UTR 60.0%
CTTCAGGCGACGATGAAGCG+TGG + Chr5:95339331-95339350 MsG0580029327.01.T01:CDS 60.0%
TCAGGCGACGATGAAGCGTG+GGG + Chr5:95339333-95339352 MsG0580029327.01.T01:CDS 60.0%
! GTCGCTGCTCAGCTGATTCC+CGG - Chr5:95338213-95338232 None:intergenic 60.0%
CAGGCGACGATGAAGCGTGG+GGG + Chr5:95339334-95339353 MsG0580029327.01.T01:CDS 65.0%
CGACGATGAAGCGTGGGGGA+CGG + Chr5:95339338-95339357 MsG0580029327.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 95336172 95341918 95336172 ID=MsG0580029327.01;Name=MsG0580029327.01
Chr5 mRNA 95336172 95341918 95336172 ID=MsG0580029327.01.T01;Parent=MsG0580029327.01;Name=MsG0580029327.01.T01;_AED=0.50;_eAED=0.50;_QI=136|1|1|1|0.87|0.88|9|465|509
Chr5 exon 95336172 95336613 95336172 ID=MsG0580029327.01.T01:exon:12299;Parent=MsG0580029327.01.T01
Chr5 exon 95338143 95338339 95338143 ID=MsG0580029327.01.T01:exon:12300;Parent=MsG0580029327.01.T01
Chr5 exon 95338668 95338803 95338668 ID=MsG0580029327.01.T01:exon:12301;Parent=MsG0580029327.01.T01
Chr5 exon 95339156 95339401 95339156 ID=MsG0580029327.01.T01:exon:12302;Parent=MsG0580029327.01.T01
Chr5 exon 95339486 95339718 95339486 ID=MsG0580029327.01.T01:exon:12303;Parent=MsG0580029327.01.T01
Chr5 exon 95340350 95340467 95340350 ID=MsG0580029327.01.T01:exon:12304;Parent=MsG0580029327.01.T01
Chr5 exon 95340950 95341102 95340950 ID=MsG0580029327.01.T01:exon:12305;Parent=MsG0580029327.01.T01
Chr5 exon 95341201 95341287 95341201 ID=MsG0580029327.01.T01:exon:12306;Parent=MsG0580029327.01.T01
Chr5 exon 95341400 95341918 95341400 ID=MsG0580029327.01.T01:exon:12307;Parent=MsG0580029327.01.T01
Chr5 five_prime_UTR 95336172 95336307 95336172 ID=MsG0580029327.01.T01:five_prime_utr;Parent=MsG0580029327.01.T01
Chr5 CDS 95336308 95336613 95336308 ID=MsG0580029327.01.T01:cds;Parent=MsG0580029327.01.T01
Chr5 CDS 95338143 95338339 95338143 ID=MsG0580029327.01.T01:cds;Parent=MsG0580029327.01.T01
Chr5 CDS 95338668 95338803 95338668 ID=MsG0580029327.01.T01:cds;Parent=MsG0580029327.01.T01
Chr5 CDS 95339156 95339401 95339156 ID=MsG0580029327.01.T01:cds;Parent=MsG0580029327.01.T01
Chr5 CDS 95339486 95339718 95339486 ID=MsG0580029327.01.T01:cds;Parent=MsG0580029327.01.T01
Chr5 CDS 95340350 95340467 95340350 ID=MsG0580029327.01.T01:cds;Parent=MsG0580029327.01.T01
Chr5 CDS 95340950 95341102 95340950 ID=MsG0580029327.01.T01:cds;Parent=MsG0580029327.01.T01
Chr5 CDS 95341201 95341287 95341201 ID=MsG0580029327.01.T01:cds;Parent=MsG0580029327.01.T01
Chr5 CDS 95341400 95341453 95341400 ID=MsG0580029327.01.T01:cds;Parent=MsG0580029327.01.T01
Chr5 three_prime_UTR 95341454 95341918 95341454 ID=MsG0580029327.01.T01:three_prime_utr;Parent=MsG0580029327.01.T01
Gene Sequence

>MsG0580029327.01.T01

ATGTCAAAACAAACATACAGTGTTTGTTTATGCTGGCGTAGAAGATTCAAGCTAGCTTTATCAGAAGCACCACAAGAGATCAAGACCCTCTTTGAACAATACTCAGAAAATGATCTCATGACACCTTCAAACCTCAAAAGATTCTTAATTGAAATACAAAAACAAGTACAAGCTACTGAAGAAGAAGCACAAGCTATCATTGATAGTTTCAAGCATTTCCATAGAAGGGGTGCTGGACTTAATCTTGAAACTTTTTTCAAGTTTCTCTTTAGTGATAGTAACCTTGCTCTTTTACCTTCAATTGGGGTGCACCATGACATGACATTACCTTTGTCCCATTATTTCATATATACTGGTCACAATTCCTATCTAACCGGGAATCAGCTGAGCAGCGACTGCAGCGACATTCCAATCGTGAAAGCATTGCAGAGAGGTGTAAGGGTAATTGAGTTGGACTTGTGGCCTAATGCATCCAAGGATAATGTTGATGTTCTTCATGGAAGGACATTGACTACTCCTGTGGAGCTCATTAGATGCTTGAGGTCTATTAAGGAACATGCCTTCGTCGCGTCAGAATTTCCGGTTGTAATAACCCTAGAAGACCATCTTACTCCAGATCTTCAAGCCAAAGTGGCCGAGATGGTTACTTCAACATTTGGAGACATACTATTTGTACCTGGCTCAGAAAGCTTGAAGGAATTTCCTTCTCCCGAATCACTTAAAAAGAGGATTATTATATCAACCAAACCACCTAAGGAGTACCTTGAGACAAAAGAAGTAAAGGAAAAAGAGGATGATTCACTGCACGGAAAGGCTTCAGGCGACGATGAAGCGTGGGGGACGGAGATCCCGAGCTTCAAGTTAGGTTTGTTATCCGATTATAAGGGAAACAGTTTGGATAAAGAATATTTTCATGACGAGGAAGAGCTTTCCGAATCAGACAAGTCACATCACCACGTAGCTCCAGAATATAAAGGTTTAATTGCCATTCATGCTGGGAAGTCGAAAGGAGGAATAGATGCATGGCTCAAAATAGATCCGGAGAAAGCTAGGCGTATAAGTCTAAGTGAGCAACAACTTGAAAAGGCTGCTATAACTCATGGAAAAGAAATTGTCAGGTTTACTCAGAAGAATATTCTGAGGGTGTTTCCAAAAGGTACTCGCATTGACTCGTCAAATTATAATCCATTAATTGGGTGGATTCATGGAGCTCAAATGGTTGCATTCAACATGCAGGGGTATGGGAGATCACTTTGGCTGATGCATGGAATGTTTAGAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGATTTTCTCTTAACGACTGGTCCGGACAATGAGGTCTTTGATCCTAAAGCTAAGTTACCTGTGAAGACTACTTTGAAGGTGACTGTATATATGGGAGAAGGATGGTATTATGATTTCAAACATACACACTTTGATCAATATTCACCTCCAGATTTCTATGCAAGAGTTGGGATTGCTGGAGTCCCTAGTGATAGTATAATGAAAAAACAAGGGCAATAG
Protein sequence

>MsG0580029327.01.T01

MSKQTYSVCLCWRRRFKLALSEAPQEIKTLFEQYSENDLMTPSNLKRFLIEIQKQVQATEEEAQAIIDSFKHFHRRGAGLNLETFFKFLFSDSNLALLPSIGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDIPIVKALQRGVRVIELDLWPNASKDNVDVLHGRTLTTPVELIRCLRSIKEHAFVASEFPVVITLEDHLTPDLQAKVAEMVTSTFGDILFVPGSESLKEFPSPESLKKRIIISTKPPKEYLETKEVKEKEDDSLHGKASGDDEAWGTEIPSFKLGLLSDYKGNSLDKEYFHDEEELSESDKSHHHVAPEYKGLIAIHAGKSKGGIDAWLKIDPEKARRISLSEQQLEKAAITHGKEIVRFTQKNILRVFPKGTRIDSSNYNPLIGWIHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPDFLLTTGPDNEVFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYARVGIAGVPSDSIMKKQGQ*