Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041300.01.T01 | XP_027350689.1 | 71.003 | 369 | 66 | 4 | 3 | 333 | 4 | 369 | 4.38E-176 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041300.01.T01 | Q8RX01 | 69.079 | 152 | 46 | 1 | 13 | 163 | 14 | 165 | 7.14E-65 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041300.01.T01 | A0A2K3PHT9 | 67.183 | 387 | 71 | 6 | 3 | 333 | 4 | 390 | 3.17e-168 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047825.01 | MsG0780041300.01 | 0.804745 | 1.863852e-49 | 9.687300e-47 |
| MsG0080048928.01 | MsG0780041300.01 | 0.826471 | 2.664438e-54 | 2.500996e-51 |
| MsG0180000023.01 | MsG0780041300.01 | 0.809052 | 2.289463e-50 | 1.330411e-47 |
| MsG0180000157.01 | MsG0780041300.01 | 0.803145 | 4.009525e-49 | 1.999702e-46 |
| MsG0180000444.01 | MsG0780041300.01 | 0.808413 | 3.135234e-50 | 1.791495e-47 |
| MsG0180000604.01 | MsG0780041300.01 | 0.803075 | 4.143845e-49 | 2.062949e-46 |
| MsG0180000669.01 | MsG0780041300.01 | 0.811930 | 5.471024e-51 | 3.430874e-48 |
| MsG0180000680.01 | MsG0780041300.01 | 0.828148 | 1.055868e-54 | 1.040708e-51 |
| MsG0180000741.01 | MsG0780041300.01 | 0.807497 | 4.910899e-50 | 2.739553e-47 |
| MsG0180001030.01 | MsG0780041300.01 | 0.808126 | 3.609883e-50 | 2.047181e-47 |
| MsG0180001153.01 | MsG0780041300.01 | 0.812519 | 4.070104e-51 | 2.593444e-48 |
| MsG0180001566.01 | MsG0780041300.01 | 0.823399 | 1.414521e-53 | 1.216468e-50 |
| MsG0180001712.01 | MsG0780041300.01 | 0.825090 | 5.665834e-54 | 5.113711e-51 |
| MsG0180002071.01 | MsG0780041300.01 | 0.811801 | 5.838688e-51 | 3.648888e-48 |
| MsG0180002075.01 | MsG0780041300.01 | 0.814002 | 1.922627e-51 | 1.274917e-48 |
| MsG0180002140.01 | MsG0780041300.01 | 0.800560 | 1.361050e-48 | 6.356973e-46 |
| MsG0180002894.01 | MsG0780041300.01 | 0.807462 | 4.996235e-50 | 2.784603e-47 |
| MsG0180004160.01 | MsG0780041300.01 | 0.806809 | 6.867203e-50 | 3.763085e-47 |
| MsG0180004486.01 | MsG0780041300.01 | 0.800578 | 1.349831e-48 | 6.307452e-46 |
| MsG0180004926.01 | MsG0780041300.01 | 0.804544 | 2.052704e-49 | 1.061252e-46 |
| MsG0180005233.01 | MsG0780041300.01 | 0.838686 | 2.481160e-57 | 3.348534e-54 |
| MsG0180005303.01 | MsG0780041300.01 | -0.808687 | 2.739907e-50 | 1.576761e-47 |
| MsG0180005304.01 | MsG0780041300.01 | 0.804903 | 1.727918e-49 | 9.017545e-47 |
| MsG0180005306.01 | MsG0780041300.01 | 0.812041 | 5.176193e-51 | 3.255693e-48 |
| MsG0180005763.01 | MsG0780041300.01 | 0.824032 | 1.005184e-53 | 8.800932e-51 |
| MsG0180006025.01 | MsG0780041300.01 | 0.818320 | 2.084866e-52 | 1.555505e-49 |
| MsG0280006302.01 | MsG0780041300.01 | -0.815697 | 8.093479e-52 | 5.619912e-49 |
| MsG0280006406.01 | MsG0780041300.01 | 0.805144 | 1.537904e-49 | 8.075379e-47 |
| MsG0780040591.01 | MsG0780041300.01 | 0.809674 | 1.683714e-50 | 9.948177e-48 |
| MsG0780040712.01 | MsG0780041300.01 | 0.801030 | 1.091390e-48 | 5.159022e-46 |
| MsG0780041192.01 | MsG0780041300.01 | 0.944396 | 2.105004e-103 | 3.008914e-98 |
| MsG0780041193.01 | MsG0780041300.01 | 0.871796 | 5.199555e-67 | 2.124650e-63 |
| MsG0780041194.01 | MsG0780041300.01 | 0.875333 | 3.347652e-68 | 1.556770e-64 |
| MsG0780041258.01 | MsG0780041300.01 | 0.802643 | 5.088888e-49 | 2.505817e-46 |
| MsG0780041300.01 | MsG0780041390.01 | 0.838465 | 2.830664e-57 | 3.794533e-54 |
| MsG0780041300.01 | MsG0780041671.01 | 0.820277 | 7.468594e-53 | 5.883146e-50 |
| MsG0780041300.01 | MsG0880042053.01 | 0.829943 | 3.878749e-55 | 4.028619e-52 |
| MsG0780041300.01 | MsG0880042107.01 | 0.814864 | 1.240098e-51 | 8.416687e-49 |
| MsG0780041300.01 | MsG0880042129.01 | 0.821482 | 3.943536e-53 | 3.212253e-50 |
| MsG0780041300.01 | MsG0880042795.01 | 0.805373 | 1.377702e-49 | 7.276511e-47 |
| MsG0780041300.01 | MsG0880043252.01 | 0.824581 | 7.470290e-54 | 6.644749e-51 |
| MsG0780041300.01 | MsG0880044574.01 | 0.804722 | 1.884619e-49 | 9.789329e-47 |
| MsG0780041300.01 | MsG0880046091.01 | 0.813290 | 2.758632e-51 | 1.794229e-48 |
| MsG0780041300.01 | MsG0880046538.01 | 0.818743 | 1.671734e-52 | 1.261895e-49 |
| MsG0780041300.01 | MsG0880046921.01 | 0.826067 | 3.324326e-54 | 3.084788e-51 |
| MsG0780041300.01 | MsG0880047294.01 | 0.822731 | 2.024399e-53 | 1.708701e-50 |
| MsG0280011293.01 | MsG0780041300.01 | 0.803588 | 3.245563e-49 | 1.637325e-46 |
| MsG0280011376.01 | MsG0780041300.01 | 0.802411 | 5.681412e-49 | 2.781246e-46 |
| MsG0380012034.01 | MsG0780041300.01 | 0.809963 | 1.458957e-50 | 8.686013e-48 |
| MsG0380012050.01 | MsG0780041300.01 | 0.810538 | 1.096839e-50 | 6.629042e-48 |
| MsG0380012160.01 | MsG0780041300.01 | 0.832914 | 7.200681e-56 | 8.163354e-53 |
| MsG0380013068.01 | MsG0780041300.01 | 0.833257 | 5.917781e-56 | 6.778186e-53 |
| MsG0380013549.01 | MsG0780041300.01 | 0.827890 | 1.218253e-54 | 1.191703e-51 |
| MsG0380013686.01 | MsG0780041300.01 | 0.813721 | 2.217415e-51 | 1.459269e-48 |
| MsG0380013834.01 | MsG0780041300.01 | 0.806566 | 7.728822e-50 | 4.208766e-47 |
| MsG0380014706.01 | MsG0780041300.01 | 0.803138 | 4.022365e-49 | 2.005766e-46 |
| MsG0380014880.01 | MsG0780041300.01 | 0.813346 | 2.681591e-51 | 1.746856e-48 |
| MsG0680031020.01 | MsG0780041300.01 | 0.804972 | 1.670993e-49 | 8.735567e-47 |
| MsG0680031805.01 | MsG0780041300.01 | -0.845332 | 4.337499e-59 | 7.204288e-56 |
| MsG0680032075.01 | MsG0780041300.01 | 0.805278 | 1.442002e-49 | 7.597472e-47 |
| MsG0680033392.01 | MsG0780041300.01 | 0.824833 | 6.513764e-54 | 5.836072e-51 |
| MsG0680034476.01 | MsG0780041300.01 | 0.802319 | 5.934663e-49 | 2.898515e-46 |
| MsG0680034655.01 | MsG0780041300.01 | 0.820658 | 6.104766e-53 | 4.859602e-50 |
| MsG0680035580.01 | MsG0780041300.01 | 0.808932 | 2.429241e-50 | 1.407037e-47 |
| MsG0480018606.01 | MsG0780041300.01 | 0.834526 | 2.848094e-56 | 3.389111e-53 |
| MsG0480018640.01 | MsG0780041300.01 | 0.810361 | 1.197590e-50 | 7.204202e-48 |
| MsG0480019148.01 | MsG0780041300.01 | 0.818751 | 1.664371e-52 | 1.256644e-49 |
| MsG0480019970.01 | MsG0780041300.01 | 0.816812 | 4.559470e-52 | 3.263954e-49 |
| MsG0480019984.01 | MsG0780041300.01 | -0.814818 | 1.269132e-51 | 8.603441e-49 |
| MsG0480020410.01 | MsG0780041300.01 | -0.810487 | 1.124913e-50 | 6.789612e-48 |
| MsG0480020719.01 | MsG0780041300.01 | 0.801171 | 1.021258e-48 | 4.844405e-46 |
| MsG0480020720.01 | MsG0780041300.01 | 0.822447 | 2.357680e-53 | 1.973932e-50 |
| MsG0480021061.01 | MsG0780041300.01 | 0.816477 | 5.419715e-52 | 3.844326e-49 |
| MsG0480021190.01 | MsG0780041300.01 | 0.807982 | 3.873715e-50 | 2.188401e-47 |
| MsG0480021949.01 | MsG0780041300.01 | 0.810813 | 9.563044e-51 | 5.822534e-48 |
| MsG0480022094.01 | MsG0780041300.01 | 0.806442 | 8.209430e-50 | 4.456341e-47 |
| MsG0480022115.01 | MsG0780041300.01 | 0.818774 | 1.644968e-52 | 1.242828e-49 |
| MsG0480023377.01 | MsG0780041300.01 | 0.842355 | 2.720159e-58 | 4.113872e-55 |
| MsG0480023659.01 | MsG0780041300.01 | 0.800069 | 1.713423e-48 | 7.903776e-46 |
| MsG0580024114.01 | MsG0780041300.01 | 0.806824 | 6.816882e-50 | 3.736890e-47 |
| MsG0580024157.01 | MsG0780041300.01 | 0.828606 | 8.190305e-55 | 8.180769e-52 |
| MsG0380015374.01 | MsG0780041300.01 | 0.817244 | 3.645889e-52 | 2.641042e-49 |
| MsG0380015893.01 | MsG0780041300.01 | 0.845174 | 4.788081e-59 | 7.911311e-56 |
| MsG0380015980.01 | MsG0780041300.01 | 0.848805 | 4.850543e-60 | 9.008224e-57 |
| MsG0380016118.01 | MsG0780041300.01 | -0.804016 | 2.644603e-49 | 1.348894e-46 |
| MsG0380016483.01 | MsG0780041300.01 | 0.805309 | 1.420623e-49 | 7.490885e-47 |
| MsG0380016765.01 | MsG0780041300.01 | 0.813369 | 2.650077e-51 | 1.727448e-48 |
| MsG0380016905.01 | MsG0780041300.01 | 0.851437 | 8.880785e-61 | 1.797536e-57 |
| MsG0380017335.01 | MsG0780041300.01 | 0.837152 | 6.151386e-57 | 7.920500e-54 |
| MsG0380017498.01 | MsG0780041300.01 | 0.802657 | 5.056821e-49 | 2.490846e-46 |
| MsG0380017506.01 | MsG0780041300.01 | 0.829379 | 5.320722e-55 | 5.436677e-52 |
| MsG0380017631.01 | MsG0780041300.01 | 0.803199 | 3.907700e-49 | 1.951662e-46 |
| MsG0380017888.01 | MsG0780041300.01 | 0.829590 | 4.726613e-55 | 4.859214e-52 |
| MsG0380017941.01 | MsG0780041300.01 | 0.846161 | 2.584063e-59 | 4.407694e-56 |
| MsG0380018075.01 | MsG0780041300.01 | 0.817422 | 3.325810e-52 | 2.421042e-49 |
| MsG0480018251.01 | MsG0780041300.01 | 0.829070 | 6.321674e-55 | 6.400109e-52 |
| MsG0480018292.01 | MsG0780041300.01 | 0.834380 | 3.099992e-56 | 3.672550e-53 |
| MsG0580026488.01 | MsG0780041300.01 | -0.801153 | 1.029776e-48 | 4.882788e-46 |
| MsG0580027401.01 | MsG0780041300.01 | 0.808913 | 2.451646e-50 | 1.419308e-47 |
| MsG0580028747.01 | MsG0780041300.01 | 0.810964 | 8.869233e-51 | 5.422436e-48 |
| MsG0580029327.01 | MsG0780041300.01 | 0.814666 | 1.371732e-51 | 9.260622e-49 |
| MsG0580029432.01 | MsG0780041300.01 | 0.803413 | 3.528416e-49 | 1.771955e-46 |
| MsG0580029444.01 | MsG0780041300.01 | 0.826546 | 2.556428e-54 | 2.404751e-51 |
| MsG0580029550.01 | MsG0780041300.01 | 0.821273 | 4.406913e-53 | 3.568695e-50 |
| MsG0580029628.01 | MsG0780041300.01 | 0.805721 | 1.164299e-49 | 6.205116e-47 |
| MsG0580029704.01 | MsG0780041300.01 | 0.805195 | 1.500696e-49 | 7.890123e-47 |
| MsG0580029801.01 | MsG0780041300.01 | 0.813951 | 1.973930e-51 | 1.307067e-48 |
| MsG0580029919.01 | MsG0780041300.01 | 0.822061 | 2.896773e-53 | 2.398478e-50 |
| MsG0580030144.01 | MsG0780041300.01 | 0.856107 | 4.022630e-62 | 9.495897e-59 |
| MsG0580030204.01 | MsG0780041300.01 | 0.826064 | 3.329937e-54 | 3.089691e-51 |
| MsG0280006865.01 | MsG0780041300.01 | 0.813642 | 2.308850e-51 | 1.516138e-48 |
| MsG0280007441.01 | MsG0780041300.01 | 0.811283 | 7.565018e-51 | 4.663504e-48 |
| MsG0280007547.01 | MsG0780041300.01 | 0.813613 | 2.342548e-51 | 1.537113e-48 |
| MsG0280007691.01 | MsG0780041300.01 | 0.828055 | 1.111877e-54 | 1.092932e-51 |
| MsG0280007764.01 | MsG0780041300.01 | 0.808860 | 2.516478e-50 | 1.454819e-47 |
| MsG0280007826.01 | MsG0780041300.01 | 0.806336 | 8.644099e-50 | 4.679521e-47 |
| MsG0280008004.01 | MsG0780041300.01 | 0.857076 | 2.088542e-62 | 5.092091e-59 |
| MsG0280009748.01 | MsG0780041300.01 | 0.805633 | 1.214862e-49 | 6.459626e-47 |
| MsG0280010109.01 | MsG0780041300.01 | 0.806435 | 8.236537e-50 | 4.470209e-47 |
| MsG0680035854.01 | MsG0780041300.01 | 0.810534 | 1.099141e-50 | 6.642097e-48 |
| MsG0780036240.01 | MsG0780041300.01 | 0.800794 | 1.219236e-48 | 5.728457e-46 |
| MsG0780036696.01 | MsG0780041300.01 | 0.805175 | 1.515082e-49 | 7.961789e-47 |
| MsG0780038316.01 | MsG0780041300.01 | 0.805207 | 1.492165e-49 | 7.847641e-47 |
| MsG0780038443.01 | MsG0780041300.01 | 0.851379 | 9.219894e-61 | 1.862791e-57 |
| MsG0780038644.01 | MsG0780041300.01 | 0.820658 | 6.104766e-53 | 4.859602e-50 |
| MsG0780038907.01 | MsG0780041300.01 | 0.824954 | 6.100475e-54 | 5.484669e-51 |
| MsG0780039717.01 | MsG0780041300.01 | 0.804311 | 2.296298e-49 | 1.180096e-46 |
| MsG0780039777.01 | MsG0780041300.01 | 0.818618 | 1.784175e-52 | 1.342112e-49 |
| MsG0780039828.01 | MsG0780041300.01 | 0.821059 | 4.937874e-53 | 3.975526e-50 |
| MsG0780039864.01 | MsG0780041300.01 | 0.811914 | 5.516277e-51 | 3.457715e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041300.01.T01 | MTR_7g106330 | 97.661 | 171 | 4 | 0 | 163 | 333 | 237 | 407 | 8.94e-114 | 336 |
| MsG0780041300.01.T01 | MTR_7g106330 | 77.640 | 161 | 4 | 1 | 3 | 163 | 4 | 132 | 2.83e-80 | 250 |
| MsG0780041300.01.T01 | MTR_7g106330 | 93.023 | 172 | 11 | 1 | 3 | 174 | 4 | 174 | 1.68e-113 | 336 |
| MsG0780041300.01.T01 | MTR_7g106330 | 97.661 | 171 | 4 | 0 | 163 | 333 | 269 | 439 | 2.18e-113 | 336 |
| MsG0780041300.01.T01 | MTR_3g011800 | 44.375 | 160 | 86 | 2 | 163 | 322 | 67 | 223 | 5.85e-42 | 146 |
| MsG0780041300.01.T01 | MTR_3g011800 | 44.444 | 162 | 83 | 3 | 163 | 322 | 117 | 273 | 1.39e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041300.01.T01 | AT3G05675 | 69.079 | 152 | 46 | 1 | 13 | 163 | 14 | 165 | 7.28e-66 | 214 |
| MsG0780041300.01.T01 | AT3G05675 | 63.218 | 174 | 58 | 4 | 163 | 332 | 270 | 441 | 1.81e-64 | 210 |
| MsG0780041300.01.T01 | AT3G05675 | 69.079 | 152 | 46 | 1 | 13 | 163 | 14 | 165 | 7.28e-66 | 214 |
| MsG0780041300.01.T01 | AT3G05675 | 63.218 | 174 | 58 | 4 | 163 | 332 | 270 | 441 | 1.81e-64 | 210 |
| MsG0780041300.01.T01 | AT3G05675 | 69.079 | 152 | 46 | 1 | 13 | 163 | 14 | 165 | 7.28e-66 | 214 |
| MsG0780041300.01.T01 | AT3G05675 | 63.218 | 174 | 58 | 4 | 163 | 332 | 270 | 441 | 1.81e-64 | 210 |
| MsG0780041300.01.T01 | AT4G10800 | 44.578 | 166 | 83 | 4 | 160 | 322 | 87 | 246 | 9.86e-39 | 138 |
| MsG0780041300.01.T01 | AT4G10800 | 44.578 | 166 | 83 | 4 | 160 | 322 | 110 | 269 | 1.34e-38 | 139 |
Find 63 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGGATATCTGTGTAAT+TGG | 0.326783 | 7:+89360759 | MsG0780041300.01.T01:CDS |
| ATCATTCTTGCATTGCCATC+AGG | 0.346115 | 7:+89361881 | MsG0780041300.01.T01:CDS |
| TTTGAAAATTGTACCGAGAA+TGG | 0.375149 | 7:+89361166 | MsG0780041300.01.T01:CDS |
| GGATGCTGCGTTGCTTAAAA+TGG | 0.377981 | 7:+89361817 | MsG0780041300.01.T01:CDS |
| TGACTGAGGCATTCGAAGTA+TGG | 0.393117 | 7:+89361963 | MsG0780041300.01.T01:CDS |
| TGCATTGCCATCAGGGGATC+AGG | 0.394170 | 7:+89361889 | MsG0780041300.01.T01:CDS |
| GGTTGGAAAACGAGAATATA+CGG | 0.406032 | 7:+89361930 | MsG0780041300.01.T01:CDS |
| TTGAAAATTGTACCGAGAAT+GGG | 0.421104 | 7:+89361167 | MsG0780041300.01.T01:CDS |
| CTGATCGGCTATCTGAGAAT+TGG | 0.421865 | 7:+89360889 | MsG0780041300.01.T01:CDS |
| CGCAAGAAGGTCGAGATGAT+TGG | 0.428744 | 7:+89360820 | MsG0780041300.01.T01:CDS |
| GGCAGAATCAATCACTGGTT+TGG | 0.436374 | 7:-89361780 | None:intergenic |
| GAGAAGACTCTCATTGTTAG+AGG | 0.440113 | 7:+89362009 | MsG0780041300.01.T01:CDS |
| TGGCGAAATGTGGCAATCTC+TGG | 0.442679 | 7:+89361841 | MsG0780041300.01.T01:CDS |
| TTGCCATCAGGGGATCAGGC+AGG | 0.460011 | 7:+89361893 | MsG0780041300.01.T01:CDS |
| AACCTTTGATGTTACCTCAA+TGG | 0.460071 | 7:-89361669 | None:intergenic |
| TGGCCAACTTGTCAGATACT+AGG | 0.460340 | 7:+89360909 | MsG0780041300.01.T01:CDS |
| TCGAATGCCTCAGTCAGGTC+TGG | 0.468523 | 7:-89361956 | None:intergenic |
| CTTCTGTACGTTGTGGTCGA+TGG | 0.471656 | 7:+89360999 | MsG0780041300.01.T01:CDS |
| AAGAATGATAGAGACAAAAC+TGG | 0.473112 | 7:-89361867 | None:intergenic |
| ATGGTTCAGTTGATGATTTG+TGG | 0.499974 | 7:+89361018 | MsG0780041300.01.T01:CDS |
| ACCTCAAGACGTTTCGCAGT+TGG | 0.501923 | 7:-89361725 | None:intergenic |
| GGTTTGGTAACCCTCACAAA+TGG | 0.504480 | 7:-89361764 | None:intergenic |
| TATCCTAGCTAGACTTCAAC+CGG | 0.505035 | 7:+89361205 | MsG0780041300.01.T01:CDS |
| GAGTCTTCTCCTTGCAACCT+TGG | 0.515051 | 7:-89361996 | None:intergenic |
| TCAGTTGATGATTTGTGGCA+TGG | 0.516798 | 7:+89361023 | MsG0780041300.01.T01:CDS |
| ATACTTCGAATGCCTCAGTC+AGG | 0.520495 | 7:-89361961 | None:intergenic |
| TCAGCTTGTAATCCCATTCT+CGG | 0.521850 | 7:-89361179 | None:intergenic |
| TGCTGCGTGTGTGAAATACT+TGG | 0.525981 | 7:+89361106 | MsG0780041300.01.T01:CDS |
| TCATTCTTGCATTGCCATCA+GGG | 0.532419 | 7:+89361882 | MsG0780041300.01.T01:CDS |
| TGCCATCAGGGGATCAGGCA+GGG | 0.532443 | 7:+89361894 | MsG0780041300.01.T01:CDS |
| AATTGTGGCTTCCATTTGTG+AGG | 0.547715 | 7:+89361753 | MsG0780041300.01.T01:CDS |
| TGAGTACTGGTTTGATGCAT+CGG | 0.555681 | 7:+89361574 | MsG0780041300.01.T01:CDS |
| TTACTCCTAATTTATGGTGT+CGG | 0.558121 | 7:+89360543 | None:intergenic |
| GATAAAGTTGCGAGCCATTG+AGG | 0.559973 | 7:+89361655 | MsG0780041300.01.T01:CDS |
| GTTATAGATCCAAGGTTGCA+AGG | 0.561101 | 7:+89361987 | MsG0780041300.01.T01:CDS |
| GAACCTAGTATCTGACAAGT+TGG | 0.564864 | 7:-89360912 | None:intergenic |
| CCACAACATCACTAGTTGAT+CGG | 0.567045 | 7:-89360785 | None:intergenic |
| TAACCGGTTGAAGTCTAGCT+AGG | 0.567773 | 7:-89361208 | None:intergenic |
| GTCATGGCAGAATCAATCAC+TGG | 0.572683 | 7:-89361785 | None:intergenic |
| AGCCATTGAGGTAACATCAA+AGG | 0.577241 | 7:+89361667 | MsG0780041300.01.T01:CDS |
| AATTAAGGATAAGGACGAGA+AGG | 0.585063 | 7:+89360743 | MsG0780041300.01.T01:intron |
| CATGGTGTTAGAAATGCTCT+TGG | 0.588296 | 7:+89361041 | MsG0780041300.01.T01:CDS |
| GGTTGAAGTCTAGCTAGGAT+AGG | 0.590203 | 7:-89361203 | None:intergenic |
| CATTCTTGCATTGCCATCAG+GGG | 0.594583 | 7:+89361883 | MsG0780041300.01.T01:CDS |
| AGCCCTGCCTGATCCCCTGA+TGG | 0.596176 | 7:-89361896 | None:intergenic |
| GTGAGGCTACGCACGCAAGA+AGG | 0.597661 | 7:+89360807 | MsG0780041300.01.T01:CDS |
| GCCAACTGCGAAACGTCTTG+AGG | 0.600096 | 7:+89361724 | MsG0780041300.01.T01:CDS |
| AGTATGGTGTTATAGATCCA+AGG | 0.604280 | 7:+89361979 | MsG0780041300.01.T01:CDS |
| AATACTTGGAAGCAATGACA+TGG | 0.605753 | 7:+89361120 | MsG0780041300.01.T01:CDS |
| TATTCGACTTCTGTACGTTG+TGG | 0.606306 | 7:+89360992 | MsG0780041300.01.T01:CDS |
| GCTGCGTTGCTTAAAATGGA+TGG | 0.619104 | 7:+89361821 | MsG0780041300.01.T01:CDS |
| GAAGTCGAATAAAGTTTACA+TGG | 0.621468 | 7:-89360980 | None:intergenic |
| ACTGGTTTGATGCATCGGAA+AGG | 0.623195 | 7:+89361579 | MsG0780041300.01.T01:CDS |
| CCGATCAACTAGTGATGTTG+TGG | 0.627570 | 7:+89360785 | MsG0780041300.01.T01:CDS |
| AGCATCCTCACAATTCGTCA+TGG | 0.633088 | 7:-89361801 | None:intergenic |
| ATTGTGGCTTCCATTTGTGA+GGG | 0.644880 | 7:+89361754 | MsG0780041300.01.T01:CDS |
| TTAAAATGGATGGCGAAATG+TGG | 0.673164 | 7:+89361831 | MsG0780041300.01.T01:CDS |
| ATACTTGGAAGCAATGACAT+GGG | 0.673251 | 7:+89361121 | MsG0780041300.01.T01:CDS |
| GACATGGGAAGAGAGTGAAG+AGG | 0.683633 | 7:+89361136 | MsG0780041300.01.T01:CDS |
| TTCTGCCATGACGAATTGTG+AGG | 0.703220 | 7:+89361796 | MsG0780041300.01.T01:CDS |
| AAAGTACTAGAACTTGAACA+AGG | 0.723329 | 7:+89361608 | MsG0780041300.01.T01:CDS |
| CAACTAGTGATGTTGTGGTG+AGG | 0.729111 | 7:+89360790 | MsG0780041300.01.T01:CDS |
| ACGGTATCCAGACCTGACTG+AGG | 0.735150 | 7:+89361949 | MsG0780041300.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATGATAATATAAAATATG+AGG | + | Chr7:89361378-89361397 | MsG0780041300.01.T01:intron | 15.0% |
| !! | AAGATTATCCTCTTTAATTA+AGG | + | Chr7:89360728-89360747 | MsG0780041300.01.T01:intron | 20.0% |
| !! | TATTACTAATTACAGATAAG+AGG | - | Chr7:89360709-89360728 | None:intergenic | 20.0% |
| ! | ATCCTCTTTAATTAAGGATA+AGG | + | Chr7:89360734-89360753 | MsG0780041300.01.T01:intron | 25.0% |
| ! | ATGTGTAAAAAGACTATTTC+CGG | + | Chr7:89361408-89361427 | MsG0780041300.01.T01:intron | 25.0% |
| ! | TATCAGAAACATATTTCTCT+CGG | + | Chr7:89361241-89361260 | MsG0780041300.01.T01:intron | 25.0% |
| !! | TTAAAGAGTGTAAAAAACCT+CGG | - | Chr7:89360667-89360686 | None:intergenic | 25.0% |
| AAGAATGATAGAGACAAAAC+TGG | - | Chr7:89361870-89361889 | None:intergenic | 30.0% | |
| GAAGTCGAATAAAGTTTACA+TGG | - | Chr7:89360983-89361002 | None:intergenic | 30.0% | |
| GTCCTTATCCTTAATTAAAG+AGG | - | Chr7:89360739-89360758 | None:intergenic | 30.0% | |
| TATCAATGAGTTGTTAAACC+CGG | - | Chr7:89361430-89361449 | None:intergenic | 30.0% | |
| TCATTGATACATTTACTCTG+TGG | + | Chr7:89361441-89361460 | MsG0780041300.01.T01:intron | 30.0% | |
| TGTGTAAAAAGACTATTTCC+GGG | + | Chr7:89361409-89361428 | MsG0780041300.01.T01:intron | 30.0% | |
| TTGAAAATTGTACCGAGAAT+GGG | + | Chr7:89361167-89361186 | MsG0780041300.01.T01:CDS | 30.0% | |
| TTTGAAAATTGTACCGAGAA+TGG | + | Chr7:89361166-89361185 | MsG0780041300.01.T01:CDS | 30.0% | |
| ! | AAAGTACTAGAACTTGAACA+AGG | + | Chr7:89361608-89361627 | MsG0780041300.01.T01:CDS | 30.0% |
| ! | ATATGTTTCTGATAGCTAAC+TGG | - | Chr7:89361235-89361254 | None:intergenic | 30.0% |
| ! | ATTGCAAGTATTTTGCTGAT+CGG | + | Chr7:89360874-89360893 | MsG0780041300.01.T01:CDS | 30.0% |
| AACCTTTGATGTTACCTCAA+TGG | - | Chr7:89361672-89361691 | None:intergenic | 35.0% | |
| AAGAGGAGACTCTGATTATT+GGG | - | Chr7:89360692-89360711 | None:intergenic | 35.0% | |
| AATACTTGGAAGCAATGACA+TGG | + | Chr7:89361120-89361139 | MsG0780041300.01.T01:CDS | 35.0% | |
| AATTAAGGATAAGGACGAGA+AGG | + | Chr7:89360743-89360762 | MsG0780041300.01.T01:intron | 35.0% | |
| ATACTTGGAAGCAATGACAT+GGG | + | Chr7:89361121-89361140 | MsG0780041300.01.T01:CDS | 35.0% | |
| GAGAAGGATATCTGTGTAAT+TGG | + | Chr7:89360759-89360778 | MsG0780041300.01.T01:CDS | 35.0% | |
| GGTTGGAAAACGAGAATATA+CGG | + | Chr7:89361930-89361949 | MsG0780041300.01.T01:CDS | 35.0% | |
| TAAGAGGAGACTCTGATTAT+TGG | - | Chr7:89360693-89360712 | None:intergenic | 35.0% | |
| TATCATCAGCGATCAACAAA+GGG | - | Chr7:89361366-89361385 | None:intergenic | 35.0% | |
| TTAAAATGGATGGCGAAATG+TGG | + | Chr7:89361831-89361850 | MsG0780041300.01.T01:CDS | 35.0% | |
| TTATCATCAGCGATCAACAA+AGG | - | Chr7:89361367-89361386 | None:intergenic | 35.0% | |
| ! | TGAGAGATTTTGTTGAGTAC+TGG | + | Chr7:89361561-89361580 | MsG0780041300.01.T01:CDS | 35.0% |
| !! | AGTATGGTGTTATAGATCCA+AGG | + | Chr7:89361979-89361998 | MsG0780041300.01.T01:CDS | 35.0% |
| !! | ATGGTTCAGTTGATGATTTG+TGG | + | Chr7:89361018-89361037 | MsG0780041300.01.T01:CDS | 35.0% |
| !! | GGTAACATCAAAGGTTTTAG+AGG | + | Chr7:89361676-89361695 | MsG0780041300.01.T01:CDS | 35.0% |
| !!! | GTCTTGAGGTTTTGAAATTG+TGG | + | Chr7:89361738-89361757 | MsG0780041300.01.T01:CDS | 35.0% |
| !!! | GTTTTAGAGGCAATTGCTTA+TGG | + | Chr7:89361689-89361708 | MsG0780041300.01.T01:CDS | 35.0% |
| AATTGTGGCTTCCATTTGTG+AGG | + | Chr7:89361753-89361772 | MsG0780041300.01.T01:CDS | 40.0% | |
| ACAGAATCACTTCCTGAAGT+AGG | + | Chr7:89361468-89361487 | MsG0780041300.01.T01:intron | 40.0% | |
| ACTTGAGTACATGCTAACTG+AGG | + | Chr7:89361330-89361349 | MsG0780041300.01.T01:intron | 40.0% | |
| AGCCATTGAGGTAACATCAA+AGG | + | Chr7:89361667-89361686 | MsG0780041300.01.T01:CDS | 40.0% | |
| ATCATCAGCGATCAACAAAG+GGG | - | Chr7:89361365-89361384 | None:intergenic | 40.0% | |
| ATCATTCTTGCATTGCCATC+AGG | + | Chr7:89361881-89361900 | MsG0780041300.01.T01:CDS | 40.0% | |
| ATTGTGGCTTCCATTTGTGA+GGG | + | Chr7:89361754-89361773 | MsG0780041300.01.T01:CDS | 40.0% | |
| CAGAATCACTTCCTGAAGTA+GGG | + | Chr7:89361469-89361488 | MsG0780041300.01.T01:intron | 40.0% | |
| CCAACTTCTTCTACTAACTG+AGG | - | Chr7:89360595-89360614 | None:intergenic | 40.0% | |
| CCACAACATCACTAGTTGAT+CGG | - | Chr7:89360788-89360807 | None:intergenic | 40.0% | |
| CCTACTTGACTGATTGTCAT+GGG | + | Chr7:89361508-89361527 | MsG0780041300.01.T01:intron | 40.0% | |
| CCTCAGTTAGTAGAAGAAGT+TGG | + | Chr7:89360592-89360611 | MsG0780041300.01.T01:intron | 40.0% | |
| CTAACTTCTTCTACTAACCG+AGG | + | Chr7:89360647-89360666 | MsG0780041300.01.T01:intron | 40.0% | |
| CTGATAGCTAACTGGTTAAC+CGG | - | Chr7:89361227-89361246 | None:intergenic | 40.0% | |
| GAACCTAGTATCTGACAAGT+TGG | - | Chr7:89360915-89360934 | None:intergenic | 40.0% | |
| GAGAAGACTCTCATTGTTAG+AGG | + | Chr7:89362009-89362028 | MsG0780041300.01.T01:CDS | 40.0% | |
| GTTATAGATCCAAGGTTGCA+AGG | + | Chr7:89361987-89362006 | MsG0780041300.01.T01:CDS | 40.0% | |
| TACTTCAGGAAGTGATTCTG+TGG | - | Chr7:89361469-89361488 | None:intergenic | 40.0% | |
| TATCCTAGCTAGACTTCAAC+CGG | + | Chr7:89361205-89361224 | MsG0780041300.01.T01:CDS | 40.0% | |
| TATTCGACTTCTGTACGTTG+TGG | + | Chr7:89360992-89361011 | MsG0780041300.01.T01:CDS | 40.0% | |
| TCAGCTTGTAATCCCATTCT+CGG | - | Chr7:89361182-89361201 | None:intergenic | 40.0% | |
| TCATTCTTGCATTGCCATCA+GGG | + | Chr7:89361882-89361901 | MsG0780041300.01.T01:CDS | 40.0% | |
| TCCTACTTGACTGATTGTCA+TGG | + | Chr7:89361507-89361526 | MsG0780041300.01.T01:intron | 40.0% | |
| TTTCAGATCATTCATTGCCG+TGG | - | Chr7:89361293-89361312 | None:intergenic | 40.0% | |
| ! | ACACACGCAGCAACAATTTT+CGG | - | Chr7:89361098-89361117 | None:intergenic | 40.0% |
| ! | CATGGTGTTAGAAATGCTCT+TGG | + | Chr7:89361041-89361060 | MsG0780041300.01.T01:CDS | 40.0% |
| !! | AGGGCTTTTAACTGAATGGT+TGG | + | Chr7:89361913-89361932 | MsG0780041300.01.T01:CDS | 40.0% |
| !! | TCAGTTGATGATTTGTGGCA+TGG | + | Chr7:89361023-89361042 | MsG0780041300.01.T01:CDS | 40.0% |
| !! | TGAGTACTGGTTTGATGCAT+CGG | + | Chr7:89361574-89361593 | MsG0780041300.01.T01:CDS | 40.0% |
| AGCATCCTCACAATTCGTCA+TGG | - | Chr7:89361804-89361823 | None:intergenic | 45.0% | |
| ATACTTCGAATGCCTCAGTC+AGG | - | Chr7:89361964-89361983 | None:intergenic | 45.0% | |
| CAACTAGTGATGTTGTGGTG+AGG | + | Chr7:89360790-89360809 | MsG0780041300.01.T01:CDS | 45.0% | |
| CATTCTTGCATTGCCATCAG+GGG | + | Chr7:89361883-89361902 | MsG0780041300.01.T01:CDS | 45.0% | |
| CCCATGACAATCAGTCAAGT+AGG | - | Chr7:89361511-89361530 | None:intergenic | 45.0% | |
| CCGATCAACTAGTGATGTTG+TGG | + | Chr7:89360785-89360804 | MsG0780041300.01.T01:CDS | 45.0% | |
| CTGATCGGCTATCTGAGAAT+TGG | + | Chr7:89360889-89360908 | MsG0780041300.01.T01:CDS | 45.0% | |
| GATAAAGTTGCGAGCCATTG+AGG | + | Chr7:89361655-89361674 | MsG0780041300.01.T01:CDS | 45.0% | |
| GCTGCGTTGCTTAAAATGGA+TGG | + | Chr7:89361821-89361840 | MsG0780041300.01.T01:CDS | 45.0% | |
| GGATGCTGCGTTGCTTAAAA+TGG | + | Chr7:89361817-89361836 | MsG0780041300.01.T01:CDS | 45.0% | |
| GGTTGAAGTCTAGCTAGGAT+AGG | - | Chr7:89361206-89361225 | None:intergenic | 45.0% | |
| GTCATGGCAGAATCAATCAC+TGG | - | Chr7:89361788-89361807 | None:intergenic | 45.0% | |
| TAACCGGTTGAAGTCTAGCT+AGG | - | Chr7:89361211-89361230 | None:intergenic | 45.0% | |
| TGCTGCGTGTGTGAAATACT+TGG | + | Chr7:89361106-89361125 | MsG0780041300.01.T01:CDS | 45.0% | |
| TGGCCAACTTGTCAGATACT+AGG | + | Chr7:89360909-89360928 | MsG0780041300.01.T01:CDS | 45.0% | |
| TTCTGCCATGACGAATTGTG+AGG | + | Chr7:89361796-89361815 | MsG0780041300.01.T01:CDS | 45.0% | |
| ! | GGCAGAATCAATCACTGGTT+TGG | - | Chr7:89361783-89361802 | None:intergenic | 45.0% |
| ! | GGTTTGGTAACCCTCACAAA+TGG | - | Chr7:89361767-89361786 | None:intergenic | 45.0% |
| ! | TGACTGAGGCATTCGAAGTA+TGG | + | Chr7:89361963-89361982 | MsG0780041300.01.T01:CDS | 45.0% |
| !! | ACTGGTTTGATGCATCGGAA+AGG | + | Chr7:89361579-89361598 | MsG0780041300.01.T01:CDS | 45.0% |
| !! | AGGCAGGGCTTTTAACTGAA+TGG | + | Chr7:89361909-89361928 | MsG0780041300.01.T01:CDS | 45.0% |
| ACCTCAAGACGTTTCGCAGT+TGG | - | Chr7:89361728-89361747 | None:intergenic | 50.0% | |
| CAGATCATTCATTGCCGTGG+AGG | - | Chr7:89361290-89361309 | None:intergenic | 50.0% | |
| CGACGATGTAGCAAAACGGA+TGG | - | Chr7:89361267-89361286 | None:intergenic | 50.0% | |
| CGCAAGAAGGTCGAGATGAT+TGG | + | Chr7:89360820-89360839 | MsG0780041300.01.T01:CDS | 50.0% | |
| CTTCTGTACGTTGTGGTCGA+TGG | + | Chr7:89360999-89361018 | MsG0780041300.01.T01:CDS | 50.0% | |
| GACATGGGAAGAGAGTGAAG+AGG | + | Chr7:89361136-89361155 | MsG0780041300.01.T01:CDS | 50.0% | |
| GAGGCGACGATGTAGCAAAA+CGG | - | Chr7:89361271-89361290 | None:intergenic | 50.0% | |
| GAGTCTTCTCCTTGCAACCT+TGG | - | Chr7:89361999-89362018 | None:intergenic | 50.0% | |
| TCCTGAAGTAGGGAACGTCT+CGG | + | Chr7:89361479-89361498 | MsG0780041300.01.T01:intron | 50.0% | |
| TGGCGAAATGTGGCAATCTC+TGG | + | Chr7:89361841-89361860 | MsG0780041300.01.T01:CDS | 50.0% | |
| ACCGAGACGTTCCCTACTTC+AGG | - | Chr7:89361483-89361502 | None:intergenic | 55.0% | |
| ACGGTATCCAGACCTGACTG+AGG | + | Chr7:89361949-89361968 | MsG0780041300.01.T01:CDS | 55.0% | |
| GCCAACTGCGAAACGTCTTG+AGG | + | Chr7:89361724-89361743 | MsG0780041300.01.T01:CDS | 55.0% | |
| TCGAATGCCTCAGTCAGGTC+TGG | - | Chr7:89361959-89361978 | None:intergenic | 55.0% | |
| TGCATTGCCATCAGGGGATC+AGG | + | Chr7:89361889-89361908 | MsG0780041300.01.T01:CDS | 55.0% | |
| TTGCTACATCGTCGCCTCCA+CGG | + | Chr7:89361273-89361292 | MsG0780041300.01.T01:intron | 55.0% | |
| GTGAGGCTACGCACGCAAGA+AGG | + | Chr7:89360807-89360826 | MsG0780041300.01.T01:CDS | 60.0% | |
| TGCCATCAGGGGATCAGGCA+GGG | + | Chr7:89361894-89361913 | MsG0780041300.01.T01:CDS | 60.0% | |
| TTGCCATCAGGGGATCAGGC+AGG | + | Chr7:89361893-89361912 | MsG0780041300.01.T01:CDS | 60.0% | |
| AGCCCTGCCTGATCCCCTGA+TGG | - | Chr7:89361899-89361918 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 89360556 | 89362054 | 89360556 | ID=MsG0780041300.01;Name=MsG0780041300.01 |
| Chr7 | mRNA | 89360556 | 89362054 | 89360556 | ID=MsG0780041300.01.T01;Parent=MsG0780041300.01;Name=MsG0780041300.01.T01;_AED=0.36;_eAED=0.37;_QI=0|0|0|1|1|1|3|0|333 |
| Chr7 | exon | 89360556 | 89360564 | 89360556 | ID=MsG0780041300.01.T01:exon:41621;Parent=MsG0780041300.01.T01 |
| Chr7 | exon | 89360750 | 89361226 | 89360750 | ID=MsG0780041300.01.T01:exon:41620;Parent=MsG0780041300.01.T01 |
| Chr7 | exon | 89361539 | 89362054 | 89361539 | ID=MsG0780041300.01.T01:exon:41619;Parent=MsG0780041300.01.T01 |
| Chr7 | CDS | 89360556 | 89360564 | 89360556 | ID=MsG0780041300.01.T01:cds;Parent=MsG0780041300.01.T01 |
| Chr7 | CDS | 89360750 | 89361226 | 89360750 | ID=MsG0780041300.01.T01:cds;Parent=MsG0780041300.01.T01 |
| Chr7 | CDS | 89361539 | 89362054 | 89361539 | ID=MsG0780041300.01.T01:cds;Parent=MsG0780041300.01.T01 |
| Gene Sequence |
| Protein sequence |
