AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023377.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023377.01.T01 MTR_6g033510 33.333 150 99 1 86 235 69 217 1.16e-21 91.7
MsG0480023377.01.T01 MTR_6g033510 33.333 150 99 1 86 235 125 273 3.02e-21 91.7
MsG0480023377.01.T01 MTR_6g033510 33.333 150 99 1 86 235 124 272 3.35e-21 91.7
MsG0480023377.01.T01 MTR_6g033510 33.333 150 99 1 86 235 126 274 3.35e-21 91.7
MsG0480023377.01.T01 MTR_6g033510 33.594 128 84 1 86 213 126 252 1.64e-16 78.2
MsG0480023377.01.T02 MTR_6g033510 33.333 150 99 1 86 235 69 217 1.16e-21 91.7
MsG0480023377.01.T02 MTR_6g033510 33.333 150 99 1 86 235 125 273 3.02e-21 91.7
MsG0480023377.01.T02 MTR_6g033510 33.333 150 99 1 86 235 124 272 3.35e-21 91.7
MsG0480023377.01.T02 MTR_6g033510 33.333 150 99 1 86 235 126 274 3.35e-21 91.7
MsG0480023377.01.T02 MTR_6g033510 33.594 128 84 1 86 213 126 252 1.64e-16 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023377.01.T01 AT2G21940 50.800 250 86 4 22 237 40 286 1.32e-76 236
MsG0480023377.01.T01 AT2G21940 50.800 250 85 4 22 237 40 285 6.81e-76 234
MsG0480023377.01.T01 AT2G21940 50.800 250 85 4 22 237 40 285 6.81e-76 234
MsG0480023377.01.T01 AT2G21940 50.800 250 85 4 22 237 40 285 6.81e-76 234
MsG0480023377.01.T01 AT4G39540 68.553 159 48 2 81 237 125 283 4.05e-71 222
MsG0480023377.01.T01 AT4G39540 68.553 159 48 2 81 237 125 283 4.05e-71 222
MsG0480023377.01.T01 AT4G39540 68.553 159 48 2 81 237 133 291 4.73e-71 222
MsG0480023377.01.T01 AT2G21940 48.869 221 75 4 22 208 40 256 2.48e-62 199
MsG0480023377.01.T01 AT2G21940 48.869 221 75 4 22 208 40 256 2.48e-62 199
MsG0480023377.01.T01 AT2G21940 48.869 221 75 4 22 208 40 256 2.48e-62 199
MsG0480023377.01.T01 AT3G26900 34.416 154 89 2 86 238 121 263 6.94e-17 79.3
MsG0480023377.01.T01 AT3G26900 34.416 154 89 2 86 238 121 263 6.94e-17 79.3
MsG0480023377.01.T01 AT3G26900 34.416 154 89 2 86 238 121 263 6.94e-17 79.3
MsG0480023377.01.T02 AT2G21940 50.800 250 86 4 22 237 40 286 1.32e-76 236
MsG0480023377.01.T02 AT2G21940 50.800 250 85 4 22 237 40 285 6.81e-76 234
MsG0480023377.01.T02 AT2G21940 50.800 250 85 4 22 237 40 285 6.81e-76 234
MsG0480023377.01.T02 AT2G21940 50.800 250 85 4 22 237 40 285 6.81e-76 234
MsG0480023377.01.T02 AT4G39540 68.553 159 48 2 81 237 125 283 4.05e-71 222
MsG0480023377.01.T02 AT4G39540 68.553 159 48 2 81 237 125 283 4.05e-71 222
MsG0480023377.01.T02 AT4G39540 68.553 159 48 2 81 237 133 291 4.73e-71 222
MsG0480023377.01.T02 AT2G21940 48.869 221 75 4 22 208 40 256 2.48e-62 199
MsG0480023377.01.T02 AT2G21940 48.869 221 75 4 22 208 40 256 2.48e-62 199
MsG0480023377.01.T02 AT2G21940 48.869 221 75 4 22 208 40 256 2.48e-62 199
MsG0480023377.01.T02 AT3G26900 34.416 154 89 2 86 238 121 263 6.94e-17 79.3
MsG0480023377.01.T02 AT3G26900 34.416 154 89 2 86 238 121 263 6.94e-17 79.3
MsG0480023377.01.T02 AT3G26900 34.416 154 89 2 86 238 121 263 6.94e-17 79.3

Find 23 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTTATAACAATATTCC+AGG 0.365109 4:-84351713 MsG0480023377.01.T01:intron
GAGTGGAAGCAAAATCTAAT+TGG 0.380675 4:+84352088 None:intergenic
GAGAATTGTGTGAGAATAAC+CGG 0.432966 4:-84351812 MsG0480023377.01.T01:CDS
GGTTATTCTCACACAATTCT+CGG 0.435105 4:+84351814 None:intergenic
AATCTAATTGGAATGGATGA+AGG 0.454241 4:+84352100 None:intergenic
TTCTCGGGTCGGGTAAGAAC+CGG 0.470591 4:+84351830 None:intergenic
TGTTCAAATGTTGCATCTAC+CGG 0.470846 4:-84351849 MsG0480023377.01.T01:CDS
TCTCACACAATTCTCGGGTC+GGG 0.489860 4:+84351820 None:intergenic
CACAGTGCAAACTGAAACGA+AGG 0.493542 4:+84351903 None:intergenic
GGTCCGACTCAAAGAACAAC+CGG 0.509222 4:+84351793 None:intergenic
TTCTCACACAATTCTCGGGT+CGG 0.518453 4:+84351819 None:intergenic
ATCTAATTGGAATGGATGAA+GGG 0.522189 4:+84352101 None:intergenic
GAAGCAAAATCTAATTGGAA+TGG 0.532321 4:+84352093 None:intergenic
TTATCGAGGATCGTTAATTG+AGG 0.534759 4:-84351934 MsG0480023377.01.T01:intron
GTTATTCTCACACAATTCTC+GGG 0.542551 4:+84351815 None:intergenic
TAACCGGTTGTTCTTTGAGT+CGG 0.545142 4:-84351796 MsG0480023377.01.T01:CDS
TGTATTGCCGCTGTATGTAA+TGG 0.551325 4:-84351882 MsG0480023377.01.T01:exon
ATTTCTCAAACAAATCTACC+AGG 0.562522 4:-84352050 MsG0480023377.01.T01:intron
TCGGTGCAAGAAGGTTTCTA+CGG 0.564921 4:-84351744 MsG0480023377.01.T01:CDS
TCTAATTGGAATGGATGAAG+GGG 0.577362 4:+84352102 None:intergenic
GTGTTAGTTAGAGTTGAACA+AGG 0.598970 4:+84352330 None:intergenic
TCAGACGATTCGGTGCAAGA+AGG 0.619552 4:-84351753 MsG0480023377.01.T01:CDS
TTAGCATCCATTACATACAG+CGG 0.666263 4:+84351875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATGGATAATTAATATA+AGG + Chr4:84351561-84351580 None:intergenic 10.0%
!! ATTATGGATAATTAATATAA+GGG + Chr4:84351560-84351579 None:intergenic 10.0%
!! GTATATATATATACTTAAAA+GGG + Chr4:84348308-84348327 None:intergenic 10.0%
!!! AAGAAAATATTTTGTTTATT+TGG + Chr4:84349693-84349712 None:intergenic 10.0%
!!! ATATTAATTATCCATAATTT+TGG - Chr4:84351562-84351581 MsG0480023377.01.T01:intron 10.0%
!!! ATTTTATATTTTTTGATTCA+TGG - Chr4:84349083-84349102 MsG0480023377.01.T01:intron 10.0%
!!! TAATTTTTATACCAATTAAT+AGG + Chr4:84351086-84351105 None:intergenic 10.0%
!!! TTATTTTTAATCTCTATAAT+TGG - Chr4:84350479-84350498 MsG0480023377.01.T01:intron 10.0%
!! ATTCAAGTGATATTAAATTA+AGG - Chr4:84348885-84348904 MsG0480023377.01.T01:intron 15.0%
!! GGTATATATATATACTTAAA+AGG + Chr4:84348309-84348328 None:intergenic 15.0%
!! TACATTTAATATTTGATATG+AGG - Chr4:84348846-84348865 MsG0480023377.01.T01:intron 15.0%
!! TAGTACAAAATTTATCAAAT+AGG - Chr4:84350356-84350375 MsG0480023377.01.T01:intron 15.0%
!! TATTATGCAATAGATAAAAA+CGG - Chr4:84348920-84348939 MsG0480023377.01.T01:intron 15.0%
!!! AAAGGTTTTAAGAAATAATT+AGG - Chr4:84350238-84350257 MsG0480023377.01.T01:intron 15.0%
!!! AAGTAAGTTTTTATGAAATT+CGG + Chr4:84351493-84351512 None:intergenic 15.0%
!!! AATTATGTAGCATTTTTTTT+TGG - Chr4:84348759-84348778 MsG0480023377.01.T01:intron 15.0%
!!! TCATAAAAACTTACTTTTAA+AGG - Chr4:84351497-84351516 MsG0480023377.01.T01:intron 15.0%
!! AAATAACATTCAACAGAATT+TGG + Chr4:84347318-84347337 None:intergenic 20.0%
!! AATATCAGAAACAAAATGTA+AGG + Chr4:84348092-84348111 None:intergenic 20.0%
!! ATATATAGAAGCAGAAAATA+AGG + Chr4:84349359-84349378 None:intergenic 20.0%
!! ATCTTTACATGTATTTGTAT+GGG - Chr4:84351165-84351184 MsG0480023377.01.T01:intron 20.0%
!! ATGTTTATTTCAAACAAAGT+TGG + Chr4:84350177-84350196 None:intergenic 20.0%
!! ATTATGCAATAGATAAAAAC+GGG - Chr4:84348921-84348940 MsG0480023377.01.T01:intron 20.0%
!! ATTGATTGATTGTACATATA+TGG - Chr4:84349892-84349911 MsG0480023377.01.T01:intron 20.0%
!! CGATTATATCAAATTAATAC+CGG + Chr4:84349436-84349455 None:intergenic 20.0%
!! GACAAAGCATATTATATTAA+GGG - Chr4:84351366-84351385 MsG0480023377.01.T01:intron 20.0%
!! TAATAGTCAAACAGAATAAT+AGG + Chr4:84350907-84350926 None:intergenic 20.0%
!! TATATAGAAGCAGAAAATAA+GGG + Chr4:84349358-84349377 None:intergenic 20.0%
!! TGACAAAGCATATTATATTA+AGG - Chr4:84351365-84351384 MsG0480023377.01.T01:intron 20.0%
!! TGTTTATTTCAAACAAAGTT+GGG + Chr4:84350176-84350195 None:intergenic 20.0%
!! TTATTTAATATGCTCATACT+TGG - Chr4:84348023-84348042 MsG0480023377.01.T01:intron 20.0%
!!! AATATTTTTTTACGCAAGTT+TGG + Chr4:84351591-84351610 None:intergenic 20.0%
!!! ATTATTATTCCTTTTGGTTT+CGG - Chr4:84346794-84346813 MsG0480023377.01.T01:intron 20.0%
!!! TATTTTGATTGTTATCATCT+AGG + Chr4:84352030-84352049 None:intergenic 20.0%
!!! TCGATTATTATTATTCCTTT+TGG - Chr4:84346788-84346807 MsG0480023377.01.T01:intron 20.0%
!!! TTTTAATCTCTATAATCGTT+TGG + Chr4:84350657-84350676 None:intergenic 20.0%
! AAAATGTAAGGATCCAAAAT+GGG + Chr4:84348080-84348099 None:intergenic 25.0%
! AAGAATTATTAGATTCGCAT+CGG + Chr4:84352257-84352276 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + Chr4:84346518-84346537 None:intergenic 25.0%
! ACAAATTGAAATGGAGTTAA+AGG + Chr4:84352175-84352194 None:intergenic 25.0%
! ACTACACTTTCAAAAACAAA+AGG + Chr4:84347167-84347186 None:intergenic 25.0%
! AGTTATCTTAAAGAGCTTAT+TGG + Chr4:84347622-84347641 None:intergenic 25.0%
! ATAACGTGATTAATATGCAA+AGG - Chr4:84347346-84347365 MsG0480023377.01.T01:intron 25.0%
! ATAGTTTACATTTATAGTCG+AGG - Chr4:84350092-84350111 MsG0480023377.01.T01:intron 25.0%
! ATCAAATGTACCATTTGAAT+AGG - Chr4:84348677-84348696 MsG0480023377.01.T01:intron 25.0%
! CAATACAAGTATGATTACTT+TGG - Chr4:84348454-84348473 MsG0480023377.01.T01:intron 25.0%
! CATCTTTACATGTATTTGTA+TGG - Chr4:84351164-84351183 MsG0480023377.01.T01:intron 25.0%
! CTACACTTTCAAAAACAAAA+GGG + Chr4:84347166-84347185 None:intergenic 25.0%
! GAGAAATGAAAGAAAAAGAA+TGG + Chr4:84346703-84346722 None:intergenic 25.0%
! GTGATAGAAAATATATTCTC+AGG + Chr4:84347856-84347875 None:intergenic 25.0%
! GTTTATTTCAAACAAAGTTG+GGG + Chr4:84350175-84350194 None:intergenic 25.0%
! TAACGTGATTAATATGCAAA+GGG - Chr4:84347347-84347366 MsG0480023377.01.T01:intron 25.0%
! TAAGATATTGTGAATTGTTC+CGG - Chr4:84350933-84350952 MsG0480023377.01.T01:intron 25.0%
! TACAAATACATGTAAAGATG+AGG + Chr4:84351164-84351183 None:intergenic 25.0%
! TGGGATGTAATTAAAGAAAT+AGG + Chr4:84349332-84349351 None:intergenic 25.0%
! TGTACAATCAATCAATATAG+AGG + Chr4:84349888-84349907 None:intergenic 25.0%
! TGTTCTTATAACAATATTCC+AGG - Chr4:84347053-84347072 MsG0480023377.01.T01:intron 25.0%
! TTAAAGAGCTTATTGGATTA+AGG + Chr4:84347615-84347634 None:intergenic 25.0%
! TTATGCAATAGATAAAAACG+GGG - Chr4:84348922-84348941 MsG0480023377.01.T01:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - Chr4:84346530-84346549 MsG0480023377.01.T01:CDS 25.0%
! TTCTTTATTGCCTATTCAAA+TGG + Chr4:84348690-84348709 None:intergenic 25.0%
! TTGCATATTAATCACGTTAT+AGG + Chr4:84347346-84347365 None:intergenic 25.0%
! TTGTTAAATAACAGCTATAG+CGG - Chr4:84350299-84350318 MsG0480023377.01.T01:intron 25.0%
! TTTATTTCAAACAAAGTTGG+GGG + Chr4:84350174-84350193 None:intergenic 25.0%
!! AAAACAGTTACTTTGATTCA+TGG - Chr4:84349040-84349059 MsG0480023377.01.T01:intron 25.0%
!! ATGTCTTTTTATCTTTTAGC+AGG + Chr4:84350460-84350479 None:intergenic 25.0%
!! GATCTATTCTGCAATTTTAT+TGG + Chr4:84348347-84348366 None:intergenic 25.0%
!! TGTCTTTTTATCTTTTAGCA+GGG + Chr4:84350459-84350478 None:intergenic 25.0%
!! TTAGCTATTCATTTTGTGAT+TGG - Chr4:84348558-84348577 MsG0480023377.01.T01:intron 25.0%
!! TTATAGTGATACATTGATTG+AGG - Chr4:84349153-84349172 MsG0480023377.01.T01:intron 25.0%
!! TTGTAACAAGCTTTTATTGT+AGG + Chr4:84350797-84350816 None:intergenic 25.0%
!!! AAGCTCTTTAAGATAACTTT+TGG - Chr4:84347624-84347643 MsG0480023377.01.T01:intron 25.0%
!!! ACAAGATCACTCTTTTTTAT+TGG + Chr4:84351951-84351970 None:intergenic 25.0%
!!! ACTGATTTGAACCATATTAA+TGG + Chr4:84350572-84350591 None:intergenic 25.0%
!!! CATTTCAATTTGTTAGCTTT+GGG - Chr4:84352182-84352201 MsG0480023377.01.T01:intron 25.0%
!!! TACAATAAAAGCTTGTTACA+AGG - Chr4:84350796-84350815 MsG0480023377.01.T01:intron 25.0%
!!! TATTGGTTCAAGTAAGAAAA+TGG + Chr4:84348330-84348349 None:intergenic 25.0%
!!! TCTTAAAACCTTTTTAAGAG+AGG + Chr4:84350231-84350250 None:intergenic 25.0%
!!! TGATGGTTTTGCTTAAAAAA+TGG + Chr4:84348254-84348273 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - Chr4:84346517-84346536 MsG0480023377.01.T01:CDS 25.0%
!!! TTTTGTCATTATTTAAAGCG+AGG - Chr4:84347189-84347208 MsG0480023377.01.T01:intron 25.0%
!!! TTTTTACTAGTGTGGTTTTA+AGG - Chr4:84350539-84350558 MsG0480023377.01.T01:intron 25.0%
AAAACAATGGAGAGAGAATA+AGG - Chr4:84346543-84346562 MsG0480023377.01.T01:CDS 30.0%
AAATGACAAGTTTATGCATC+AGG + Chr4:84351037-84351056 None:intergenic 30.0%
AACAAAAGATCCGTAAATGT+GGG + Chr4:84349772-84349791 None:intergenic 30.0%
AACATTCAACAGAATTTGGA+AGG + Chr4:84347314-84347333 None:intergenic 30.0%
AATCAGCAAGACCTATAATA+TGG + Chr4:84349109-84349128 None:intergenic 30.0%
AATCAGCAAGACTTGTAATA+TGG + Chr4:84349066-84349085 None:intergenic 30.0%
AATCTAATTGGAATGGATGA+AGG + Chr4:84346669-84346688 None:intergenic 30.0%
AATGACAAGTTTATGCATCA+GGG + Chr4:84351036-84351055 None:intergenic 30.0%
AATTTCTTGTCTTTGTTCAC+AGG - Chr4:84348593-84348612 MsG0480023377.01.T01:intron 30.0%
ACTTGAATATGAACACTAGT+TGG + Chr4:84348873-84348892 None:intergenic 30.0%
AGAAATAATTAGGTGCTTAC+TGG - Chr4:84350248-84350267 MsG0480023377.01.T01:intron 30.0%
ATAATTCTTCTGTATCTTGC+AGG - Chr4:84352268-84352287 MsG0480023377.01.T01:intron 30.0%
ATACTTTCAAATTGACATGC+AGG - Chr4:84348485-84348504 MsG0480023377.01.T01:intron 30.0%
ATATATTATAAGCTGCTCCA+AGG - Chr4:84349373-84349392 MsG0480023377.01.T01:intron 30.0%
ATCCTCGATAAAATAAGGAA+TGG + Chr4:84346823-84346842 None:intergenic 30.0%
ATCTAATTGGAATGGATGAA+GGG + Chr4:84346668-84346687 None:intergenic 30.0%
ATGAAAGAAAAAGAATGGAG+TGG + Chr4:84346698-84346717 None:intergenic 30.0%
ATTTCTCAAACAAATCTACC+AGG - Chr4:84346716-84346735 MsG0480023377.01.T01:intron 30.0%
ATTTCTTGTCTTTGTTCACA+GGG - Chr4:84348594-84348613 MsG0480023377.01.T01:intron 30.0%
CAAAATGTAAGGATCCAAAA+TGG + Chr4:84348081-84348100 None:intergenic 30.0%
CAAACAGAATAATAGGAGTT+AGG + Chr4:84350900-84350919 None:intergenic 30.0%
CAGATTCTGTAAGAAAAAAC+AGG - Chr4:84351780-84351799 MsG0480023377.01.T01:CDS 30.0%
CAGTTAATATGCTTCAATTC+AGG + Chr4:84350718-84350737 None:intergenic 30.0%
CCAAAGCTAACAAATTGAAA+TGG + Chr4:84352184-84352203 None:intergenic 30.0%
CGACAATGTAAATACATACA+AGG + Chr4:84351812-84351831 None:intergenic 30.0%
CTCTCATATTGTTAAAGTAG+AGG + Chr4:84349963-84349982 None:intergenic 30.0%
CTGATATTACTATCTGTTGA+TGG + Chr4:84348271-84348290 None:intergenic 30.0%
CTGTGAACAGTGTAATTAAT+TGG + Chr4:84347115-84347134 None:intergenic 30.0%
GAAGCAAAATCTAATTGGAA+TGG + Chr4:84346676-84346695 None:intergenic 30.0%
GAATATTTCTTCAACCAGTT+AGG - Chr4:84349801-84349820 MsG0480023377.01.T01:intron 30.0%
GATTGATTGTACATATATGG+TGG - Chr4:84349895-84349914 MsG0480023377.01.T01:intron 30.0%
TAACGATCCTCGATAAAATA+AGG + Chr4:84346828-84346847 None:intergenic 30.0%
TAAGCAAATTTGTAGATGCT+AGG - Chr4:84347231-84347250 MsG0480023377.01.T01:intron 30.0%
TACATGTATTTGTATGGGAA+TGG - Chr4:84351170-84351189 MsG0480023377.01.T01:intron 30.0%
TATGCAATAGATAAAAACGG+GGG - Chr4:84348923-84348942 MsG0480023377.01.T01:intron 30.0%
TGACATCAACACTAATTAGA+AGG + Chr4:84347539-84347558 None:intergenic 30.0%
TGTATGTATTTACATTGTCG+TGG - Chr4:84351812-84351831 MsG0480023377.01.T01:CDS 30.0%
TGTCCAAAAGTTGTCAAAAA+TGG - Chr4:84346611-84346630 MsG0480023377.01.T01:CDS 30.0%
TGTTTAATTATAGCAGAACC+TGG + Chr4:84347074-84347093 None:intergenic 30.0%
TTAATTACACTGTTCACAGT+TGG - Chr4:84347116-84347135 MsG0480023377.01.T01:CDS 30.0%
TTCTACATACCAATTCATGA+TGG - Chr4:84349608-84349627 MsG0480023377.01.T01:CDS 30.0%
TTGAATATAATCGCATGTGT+CGG + Chr4:84347499-84347518 None:intergenic 30.0%
TTGATTCATGGCCATATTAT+AGG - Chr4:84349095-84349114 MsG0480023377.01.T01:intron 30.0%
! AAAATAAGTGCTTCCCATTT+TGG - Chr4:84348064-84348083 MsG0480023377.01.T01:intron 30.0%
! AAGTTTGGTGACCAAAATTA+TGG + Chr4:84351576-84351595 None:intergenic 30.0%
! ACACTTTTCCTTGAAATATG+CGG + Chr4:84347988-84348007 None:intergenic 30.0%
! ACTAATTGATTCAGAACACT+AGG + Chr4:84351865-84351884 None:intergenic 30.0%
! CAAAGTAACTGTTTTGCAAT+AGG + Chr4:84349035-84349054 None:intergenic 30.0%
! CATAAACTTGTCATTTCTAC+AGG - Chr4:84351041-84351060 MsG0480023377.01.T01:intron 30.0%
! CATTTGCTTTCTTGTTATGT+TGG - Chr4:84350123-84350142 MsG0480023377.01.T01:intron 30.0%
! GATGACAATTTTTACTAGTG+TGG - Chr4:84350531-84350550 MsG0480023377.01.T01:intron 30.0%
! GCTACACAATTTACATGTTT+TGG + Chr4:84348632-84348651 None:intergenic 30.0%
! GGTTTTGCTTAAAAAATGGA+AGG + Chr4:84348250-84348269 None:intergenic 30.0%
! TTATCAAATAGGTGCTATAG+TGG - Chr4:84350367-84350386 MsG0480023377.01.T01:intron 30.0%
!! AAGCAGAAAATAAGGGTATT+GGG + Chr4:84349351-84349370 None:intergenic 30.0%
!! AAGGTACTGAACCATTAATA+TGG - Chr4:84350558-84350577 MsG0480023377.01.T01:intron 30.0%
!! ACTCTATGATTTTGATCTCA+TGG + Chr4:84347262-84347281 None:intergenic 30.0%
!! CAACCATTTTTGACAACTTT+TGG + Chr4:84346617-84346636 None:intergenic 30.0%
!! CCATTTCAATTTGTTAGCTT+TGG - Chr4:84352181-84352200 MsG0480023377.01.T01:intron 30.0%
!! TAAAACCTTTTTAAGAGAGG+AGG + Chr4:84350228-84350247 None:intergenic 30.0%
!!! AAAGCGAGGTTTTGTTTTTT+TGG - Chr4:84347203-84347222 MsG0480023377.01.T01:intron 30.0%
!!! CTGTTTTTTCTTACAGAATC+TGG + Chr4:84351782-84351801 None:intergenic 30.0%
!!! TCACTCTTTTTTATTGGAGA+AGG + Chr4:84351945-84351964 None:intergenic 30.0%
!!! TTCCATTCCTTATTTTATCG+AGG - Chr4:84346818-84346837 MsG0480023377.01.T01:intron 30.0%
AAATTGACATGCAGGAATGA+TGG - Chr4:84348493-84348512 MsG0480023377.01.T01:intron 35.0%
AACAGCATAATGTCTGATGA+TGG - Chr4:84350846-84350865 MsG0480023377.01.T01:intron 35.0%
AACATGTTGAGTCACTTGAT+AGG + Chr4:84350626-84350645 None:intergenic 35.0%
AATGCTATTCAAGCATCCAA+TGG + Chr4:84347922-84347941 None:intergenic 35.0%
AATTGACATGCAGGAATGAT+GGG - Chr4:84348494-84348513 MsG0480023377.01.T01:intron 35.0%
ACATGTTGAGTCACTTGATA+GGG + Chr4:84350625-84350644 None:intergenic 35.0%
ACCTCAATTGCAATTTCAGT+TGG + Chr4:84352130-84352149 None:intergenic 35.0%
AGATTCTGCCGTATTTAAGT+GGG - Chr4:84348372-84348391 MsG0480023377.01.T01:intron 35.0%
AGTTTGTAGAGACAGCAAAT+GGG - Chr4:84349846-84349865 MsG0480023377.01.T01:intron 35.0%
ATCATACTTGTATTGCATGC+CGG + Chr4:84348449-84348468 None:intergenic 35.0%
ATGCAATAGATAAAAACGGG+GGG - Chr4:84348924-84348943 MsG0480023377.01.T01:intron 35.0%
ATGTTGTTGGTCAGTTTCTT+TGG - Chr4:84348405-84348424 MsG0480023377.01.T01:intron 35.0%
CAAATCCTCCTCTCTTAAAA+AGG - Chr4:84350220-84350239 MsG0480023377.01.T01:intron 35.0%
CAACAAAAGATCCGTAAATG+TGG + Chr4:84349773-84349792 None:intergenic 35.0%
GAGAATTGTGTGAGAATAAC+CGG - Chr4:84346954-84346973 MsG0480023377.01.T01:intron 35.0%
GAGTGGAAGCAAAATCTAAT+TGG + Chr4:84346681-84346700 None:intergenic 35.0%
GCAGATATAGCAACAAAACT+GGG - Chr4:84352079-84352098 MsG0480023377.01.T01:five_prime_UTR 35.0%
GCATATTTCAAGGAAAAGTG+TGG - Chr4:84347987-84348006 MsG0480023377.01.T01:intron 35.0%
GCCAAATGTACCATTTGAAT+AGG - Chr4:84348781-84348800 MsG0480023377.01.T01:intron 35.0%
GCCTATTCAAATGGTACATT+TGG + Chr4:84348681-84348700 None:intergenic 35.0%
GCTGAAATACCAATTCATGT+TGG - Chr4:84349562-84349581 MsG0480023377.01.T01:CDS 35.0%
GCTGATATATTCAAGCTCTA+TGG - Chr4:84349199-84349218 MsG0480023377.01.T01:intron 35.0%
GCTTGAATAGCATTTACTTC+TGG - Chr4:84347928-84347947 MsG0480023377.01.T01:intron 35.0%
GGAATTTACCGCATATTTCA+AGG - Chr4:84347977-84347996 MsG0480023377.01.T01:intron 35.0%
GGTTATTCTCACACAATTCT+CGG + Chr4:84346955-84346974 None:intergenic 35.0%
GTGATTAATATGCAAAGGGA+GGG - Chr4:84347351-84347370 MsG0480023377.01.T01:intron 35.0%
GTGTTAGTTAGAGTTGAACA+AGG + Chr4:84346439-84346458 None:intergenic 35.0%
GTTATTCTCACACAATTCTC+GGG + Chr4:84346954-84346973 None:intergenic 35.0%
TACTCTTGTAGCTTCAACAT+TGG - Chr4:84348111-84348130 MsG0480023377.01.T01:intron 35.0%
TCCAACTGAAATTGCAATTG+AGG - Chr4:84352126-84352145 MsG0480023377.01.T01:intron 35.0%
TCTAATTGGAATGGATGAAG+GGG + Chr4:84346667-84346686 None:intergenic 35.0%
TGAAAAAGCTTCAGACGATT+CGG - Chr4:84347003-84347022 MsG0480023377.01.T01:intron 35.0%
TGCAGATATAGCAACAAAAC+TGG - Chr4:84352078-84352097 MsG0480023377.01.T01:five_prime_UTR 35.0%
TGGTACTCTACAATTAACAG+TGG - Chr4:84349582-84349601 MsG0480023377.01.T01:CDS 35.0%
TGTCAAGTACCATCATGAAT+TGG + Chr4:84349620-84349639 None:intergenic 35.0%
TGTTCAAATGTTGCATCTAC+CGG - Chr4:84346917-84346936 MsG0480023377.01.T01:intron 35.0%
TTACATTTATAGTCGAGGTC+TGG - Chr4:84350097-84350116 MsG0480023377.01.T01:intron 35.0%
TTACTTGCAGAAATCCTAAC+TGG + Chr4:84349818-84349837 None:intergenic 35.0%
TTAGCATCCATTACATACAG+CGG + Chr4:84346894-84346913 None:intergenic 35.0%
TTATCGAGGATCGTTAATTG+AGG - Chr4:84346832-84346851 MsG0480023377.01.T01:intron 35.0%
TTCATATGATCGTATCAGCT+GGG - Chr4:84350061-84350080 MsG0480023377.01.T01:intron 35.0%
TTCTAATGAGACTCTAGCAT+TGG + Chr4:84351708-84351727 None:intergenic 35.0%
TTGTTTACCATTTCAGACTG+AGG - Chr4:84350995-84351014 MsG0480023377.01.T01:intron 35.0%
TTTCATATGATCGTATCAGC+TGG - Chr4:84350060-84350079 MsG0480023377.01.T01:intron 35.0%
! AAACTTGTCATTTCTACAGG+TGG - Chr4:84351044-84351063 MsG0480023377.01.T01:intron 35.0%
! AAAGCAACATGTCTTTTAGC+AGG - Chr4:84350674-84350693 MsG0480023377.01.T01:intron 35.0%
! AAGCAACATGTCTTTTAGCA+GGG - Chr4:84350675-84350694 MsG0480023377.01.T01:intron 35.0%
! ACAAATCAGACGCATCTTTT+CGG + Chr4:84352105-84352124 None:intergenic 35.0%
! ATTAAGCCAGCTTTTACCAT+TGG - Chr4:84347903-84347922 MsG0480023377.01.T01:intron 35.0%
! CTAGGAAGCATATAACATGA+AGG + Chr4:84352012-84352031 None:intergenic 35.0%
! GAAGCAGAAAATAAGGGTAT+TGG + Chr4:84349352-84349371 None:intergenic 35.0%
! GCAAATTGGCAACTTTTTGA+AGG - Chr4:84352298-84352317 MsG0480023377.01.T01:intron 35.0%
! GGTAAAAGCTGGCTTAATAT+TGG + Chr4:84347901-84347920 None:intergenic 35.0%
! TAGTTTGTAGAGACAGCAAA+TGG - Chr4:84349845-84349864 MsG0480023377.01.T01:intron 35.0%
! TGATACATTGATTGAGGAAG+AGG - Chr4:84349159-84349178 MsG0480023377.01.T01:intron 35.0%
! TGTAGAGTACCAACATGAAT+TGG + Chr4:84349574-84349593 None:intergenic 35.0%
!! AACTTTTTGAAGGCAGAAGA+TGG - Chr4:84352308-84352327 MsG0480023377.01.T01:intron 35.0%
!! AAGAGAGGAGGATTTGTTTT+AGG + Chr4:84350216-84350235 None:intergenic 35.0%
!! ATTCGGTGTAATCAATGCAT+TGG + Chr4:84351476-84351495 None:intergenic 35.0%
!! TCTGATCTTTTTGAAGAGAG+AGG - Chr4:84351665-84351684 MsG0480023377.01.T01:intron 35.0%
!!! AGAGAGGAGGATTTGTTTTA+GGG + Chr4:84350215-84350234 None:intergenic 35.0%
!!! CTGAAGCTTTTTCAGTTTAC+TGG + Chr4:84346997-84347016 None:intergenic 35.0%
!!! GTTATGTTGGCTTCTAGTTT+TGG - Chr4:84350136-84350155 MsG0480023377.01.T01:intron 35.0%
!!! TGGGAAGCACTTATTTTAGT+AGG + Chr4:84348061-84348080 None:intergenic 35.0%
AAAACTAGAGCAAAATCCCC+AGG + Chr4:84348964-84348983 None:intergenic 40.0%
AAAGAGATACTGAACTGACC+TGG + Chr4:84346737-84346756 None:intergenic 40.0%
AAAGATCCGTAAATGTGGGA+CGG + Chr4:84349768-84349787 None:intergenic 40.0%
AAGCATCCAATGGTAAAAGC+TGG + Chr4:84347912-84347931 None:intergenic 40.0%
AATAGATAAAAACGGGGGGA+GGG - Chr4:84348928-84348947 MsG0480023377.01.T01:intron 40.0%
ACCAGTTGTAATTCACATGC+AGG - Chr4:84351628-84351647 MsG0480023377.01.T01:intron 40.0%
AGAATCTTTCTTTCGCGAGA+AGG - Chr4:84349222-84349241 MsG0480023377.01.T01:intron 40.0%
ATACAGCGCCCACTTAAATA+CGG + Chr4:84348383-84348402 None:intergenic 40.0%
ATCCAATCACAAGTAGCTCA+TGG - Chr4:84347726-84347745 MsG0480023377.01.T01:CDS 40.0%
CAAACCTGTAAAGTTGGACA+GGG + Chr4:84350025-84350044 None:intergenic 40.0%
CAATAGAACGTAACAGTGGA+TGG + Chr4:84347656-84347675 None:intergenic 40.0%
CAGATTCTGCCGTATTTAAG+TGG - Chr4:84348371-84348390 MsG0480023377.01.T01:intron 40.0%
CAGGAAATATATGCACAAGG+GGG - Chr4:84351198-84351217 MsG0480023377.01.T01:intron 40.0%
CATGTTGAGTCACTTGATAG+GGG + Chr4:84350624-84350643 None:intergenic 40.0%
CCAGGAAATATATGCACAAG+GGG - Chr4:84351197-84351216 MsG0480023377.01.T01:intron 40.0%
CGTGATTAATATGCAAAGGG+AGG - Chr4:84347350-84347369 MsG0480023377.01.T01:intron 40.0%
CTAGTAACAAGCTGGTAAGA+GGG + Chr4:84349929-84349948 None:intergenic 40.0%
CTTCAACATTGGAATCTGGA+GGG - Chr4:84348122-84348141 MsG0480023377.01.T01:intron 40.0%
GAATGGAAACCGAAACCAAA+AGG + Chr4:84346806-84346825 None:intergenic 40.0%
GCCAGGAAATATATGCACAA+GGG - Chr4:84351196-84351215 MsG0480023377.01.T01:intron 40.0%
GCTACAATAGAACGTAACAG+TGG + Chr4:84347660-84347679 None:intergenic 40.0%
GTAGCTTCAACATTGGAATC+TGG - Chr4:84348118-84348137 MsG0480023377.01.T01:intron 40.0%
TAACCGGTTGTTCTTTGAGT+CGG - Chr4:84346970-84346989 MsG0480023377.01.T01:intron 40.0%
TAGTAACAAGCTGGTAAGAG+GGG + Chr4:84349928-84349947 None:intergenic 40.0%
TCATACTTGTATTGCATGCC+GGG + Chr4:84348448-84348467 None:intergenic 40.0%
TGCCAGGAAATATATGCACA+AGG - Chr4:84351195-84351214 MsG0480023377.01.T01:intron 40.0%
TGGGCAAACTGGAATATTCA+CGG - Chr4:84352201-84352220 MsG0480023377.01.T01:intron 40.0%
TGTATTGCCGCTGTATGTAA+TGG - Chr4:84346884-84346903 MsG0480023377.01.T01:intron 40.0%
TGTTGCCAAACCTGTAAAGT+TGG + Chr4:84350031-84350050 None:intergenic 40.0%
TGTTTGGTTAGATGTACCAG+TGG - Chr4:84351225-84351244 MsG0480023377.01.T01:intron 40.0%
TTCAATGCCTCAGTCTGAAA+TGG + Chr4:84351005-84351024 None:intergenic 40.0%
TTCCATGAGCTACTTGTGAT+TGG + Chr4:84347731-84347750 None:intergenic 40.0%
TTCTGATCCAAAGTGTGTTC+AGG - Chr4:84347447-84347466 MsG0480023377.01.T01:intron 40.0%
TTGATTGAGGAAGAGGTTGA+TGG - Chr4:84349166-84349185 MsG0480023377.01.T01:intron 40.0%
! ACTTTGGATCAGAAGTGTGT+CGG + Chr4:84347441-84347460 None:intergenic 40.0%
! AGCAACATGTCTTTTAGCAG+GGG - Chr4:84350676-84350695 MsG0480023377.01.T01:intron 40.0%
! GAAATGGAGTTAAAGGCATG+AGG + Chr4:84352168-84352187 None:intergenic 40.0%
! GTGACTATTAGGGGAGTTTT+GGG + Chr4:84347821-84347840 None:intergenic 40.0%
! TAGGGGTGTACATCAATACA+TGG + Chr4:84350607-84350626 None:intergenic 40.0%
! TGTGACTATTAGGGGAGTTT+TGG + Chr4:84347822-84347841 None:intergenic 40.0%
! TGTTTTGCAATAGGCAGATG+TGG + Chr4:84349026-84349045 None:intergenic 40.0%
!! ATGTCTGATGATGGCATGTA+CGG - Chr4:84350855-84350874 MsG0480023377.01.T01:intron 40.0%
!! CAAAGGGAGGGTATTTAGAA+TGG - Chr4:84347363-84347382 MsG0480023377.01.T01:intron 40.0%
!! TTTGTTAGCTTTGGGCAAAC+TGG - Chr4:84352190-84352209 MsG0480023377.01.T01:intron 40.0%
!! TTTTTGAAGGCAGAAGATGG+TGG - Chr4:84352311-84352330 MsG0480023377.01.T01:intron 40.0%
AGAACCAACTCTTCCTCAAG+GGG + Chr4:84348157-84348176 None:intergenic 45.0%
AGCACTACACTTCACATCGA+AGG + Chr4:84349530-84349549 None:intergenic 45.0%
AGTAACAAGCTGGTAAGAGG+GGG + Chr4:84349927-84349946 None:intergenic 45.0%
ATAGATAAAAACGGGGGGAG+GGG - Chr4:84348929-84348948 MsG0480023377.01.T01:intron 45.0%
ATATTGATCTCCCGTCTCCT+TGG + Chr4:84349393-84349412 None:intergenic 45.0%
ATCTTTCTTTCGCGAGAAGG+AGG - Chr4:84349225-84349244 MsG0480023377.01.T01:intron 45.0%
CAAGCTGGTGTGACTATTAG+GGG + Chr4:84347830-84347849 None:intergenic 45.0%
CAATAGATAAAAACGGGGGG+AGG - Chr4:84348927-84348946 MsG0480023377.01.T01:intron 45.0%
CACAGTGCAAACTGAAACGA+AGG + Chr4:84346866-84346885 None:intergenic 45.0%
CAGAACCAACTCTTCCTCAA+GGG + Chr4:84348158-84348177 None:intergenic 45.0%
CATTTATAGTCGAGGTCTGG+AGG - Chr4:84350100-84350119 MsG0480023377.01.T01:intron 45.0%
CCAAACCTGTAAAGTTGGAC+AGG + Chr4:84350026-84350045 None:intergenic 45.0%
CCAAGCTGGTGTGACTATTA+GGG + Chr4:84347831-84347850 None:intergenic 45.0%
CCCCTTGTGCATATATTTCC+TGG + Chr4:84351200-84351219 None:intergenic 45.0%
CCTAGTAACAAGCTGGTAAG+AGG + Chr4:84349930-84349949 None:intergenic 45.0%
CCTGTCCAACTTTACAGGTT+TGG - Chr4:84350023-84350042 MsG0480023377.01.T01:intron 45.0%
CTGCTTCATCGTGTAGAAGA+GGG + Chr4:84351294-84351313 None:intergenic 45.0%
CTGTTGTGCGGCCTATTAAT+TGG - Chr4:84351072-84351091 MsG0480023377.01.T01:intron 45.0%
GAATGTCCGTCCCACATTTA+CGG - Chr4:84349759-84349778 MsG0480023377.01.T01:intron 45.0%
GCCTGCATGTGAATTACAAC+TGG + Chr4:84351632-84351651 None:intergenic 45.0%
GCTTCAACATTGGAATCTGG+AGG - Chr4:84348121-84348140 MsG0480023377.01.T01:intron 45.0%
GTCAACACCTGAACACACTT+TGG + Chr4:84347457-84347476 None:intergenic 45.0%
GTTGATGTCTCGTGATTACC+CGG - Chr4:84348427-84348446 MsG0480023377.01.T01:intron 45.0%
TATAAGCTGCTCCAAGGAGA+CGG - Chr4:84349379-84349398 MsG0480023377.01.T01:intron 45.0%
TATATTCTCAGGTGCCAAGC+TGG + Chr4:84347845-84347864 None:intergenic 45.0%
TCAGAACCAACTCTTCCTCA+AGG + Chr4:84348159-84348178 None:intergenic 45.0%
TCGGTGCAAGAAGGTTTCTA+CGG - Chr4:84347022-84347041 MsG0480023377.01.T01:intron 45.0%
TGACTGTGTGACAGAACCAT+AGG + Chr4:84350963-84350982 None:intergenic 45.0%
TGTGACATGGGTGAACAAAC+AGG + Chr4:84349986-84350005 None:intergenic 45.0%
TTCTCACACAATTCTCGGGT+CGG + Chr4:84346950-84346969 None:intergenic 45.0%
TTGACACTTAGCAGTGTCAC+AGG - Chr4:84349634-84349653 MsG0480023377.01.T01:intron 45.0%
TTGTTCACCCATGTCACAGA+TGG - Chr4:84349988-84350007 MsG0480023377.01.T01:intron 45.0%
! AGATGTACCAGTGGAAGCAT+TGG - Chr4:84351234-84351253 MsG0480023377.01.T01:intron 45.0%
! AGTTCCTTTTACCGAGTCAG+TGG - Chr4:84349737-84349756 MsG0480023377.01.T01:intron 45.0%
! ATCTTTTAGCAGGGAGTCCA+TGG + Chr4:84350450-84350469 None:intergenic 45.0%
! CTTGTCATTTCTACAGGTGG+AGG - Chr4:84351047-84351066 MsG0480023377.01.T01:intron 45.0%
! GGGCGCTGTATATATGTTGT+TGG - Chr4:84348392-84348411 MsG0480023377.01.T01:intron 45.0%
! TCTTTTAGCAGGGGAGTTCA+TGG - Chr4:84350685-84350704 MsG0480023377.01.T01:intron 45.0%
!! CATTCCACTGACTCGGTAAA+AGG + Chr4:84349744-84349763 None:intergenic 45.0%
!! CCTCTTACCAGCTTGTTACT+AGG - Chr4:84349927-84349946 MsG0480023377.01.T01:intron 45.0%
!! TCAGAAGTGTGTCGGTGTTA+CGG + Chr4:84347433-84347452 None:intergenic 45.0%
!! TGAGGAAGAGTTGGTTCTGA+AGG - Chr4:84348159-84348178 MsG0480023377.01.T01:intron 45.0%
!! TGTGTTCAGGTGTTGACATG+TGG - Chr4:84347460-84347479 MsG0480023377.01.T01:CDS 45.0%
!! TTGTATGGGAATGGATTGCC+AGG - Chr4:84351179-84351198 MsG0480023377.01.T01:intron 45.0%
!! AAAAAATAATTTCTAAATTT+GGG + Chr4:84351430-84351449 None:intergenic 5.0%
!! AATTGAAAAAAAAAAAAAAA+AGG - Chr4:84347956-84347975 MsG0480023377.01.T01:intron 5.0%
!! TAAAAAATAATTTCTAAATT+TGG + Chr4:84351431-84351450 None:intergenic 5.0%
AAATGTTAACGAGTGCCCCC+GGG + Chr4:84351537-84351556 None:intergenic 50.0%
ACCTGTAAAGTTGGACAGGG+CGG + Chr4:84350022-84350041 None:intergenic 50.0%
ACTCGCTCCTAGTAACAAGC+TGG + Chr4:84349937-84349956 None:intergenic 50.0%
AGCAGGAGATGCATACACTG+CGG - Chr4:84351309-84351328 MsG0480023377.01.T01:intron 50.0%
AGGGCATAAGTTTCCCCTTG+AGG - Chr4:84348141-84348160 MsG0480023377.01.T01:intron 50.0%
AGGGCGAGAATTAGTTCCCA+CGG + Chr4:84351275-84351294 None:intergenic 50.0%
ATAAGCTGCTCCAAGGAGAC+GGG - Chr4:84349380-84349399 MsG0480023377.01.T01:intron 50.0%
CCACTGTCCATCTGTGACAT+GGG + Chr4:84349998-84350017 None:intergenic 50.0%
CCCTAATAGTCACACCAGCT+TGG - Chr4:84347828-84347847 MsG0480023377.01.T01:intron 50.0%
CCTCTTCTACACGATGAAGC+AGG - Chr4:84351292-84351311 MsG0480023377.01.T01:intron 50.0%
CCTGCTTCATCGTGTAGAAG+AGG + Chr4:84351295-84351314 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG + Chr4:84351538-84351557 None:intergenic 50.0%
GAGAAGGAGGTCAGTTGGAA+AGG - Chr4:84349238-84349257 MsG0480023377.01.T01:intron 50.0%
GCCAAAAGAATTGCAGCCGT+GGG - Chr4:84351256-84351275 MsG0480023377.01.T01:intron 50.0%
GCCAAGCTGGTGTGACTATT+AGG + Chr4:84347832-84347851 None:intergenic 50.0%
GGTCCGACTCAAAGAACAAC+CGG + Chr4:84346976-84346995 None:intergenic 50.0%
GTAGAGACAGCAAATGGGCA+TGG - Chr4:84349851-84349870 MsG0480023377.01.T01:intron 50.0%
GTTTCCCCTTGAGGAAGAGT+TGG - Chr4:84348150-84348169 MsG0480023377.01.T01:intron 50.0%
TAGATAAAAACGGGGGGAGG+GGG - Chr4:84348930-84348949 MsG0480023377.01.T01:intron 50.0%
TCCACTGTCCATCTGTGACA+TGG + Chr4:84349999-84350018 None:intergenic 50.0%
TCTCACACAATTCTCGGGTC+GGG + Chr4:84346949-84346968 None:intergenic 50.0%
TGACAGAACCATAGGCTAGC+CGG + Chr4:84350955-84350974 None:intergenic 50.0%
TTGCAGGCGCTAGAGCAAAT+TGG - Chr4:84352284-84352303 MsG0480023377.01.T01:intron 50.0%
! CTTTTGGCCAATGCTTCCAC+TGG + Chr4:84351244-84351263 None:intergenic 50.0%
! TCCCACGGCTGCAATTCTTT+TGG + Chr4:84351260-84351279 None:intergenic 50.0%
! TGCACAAGGGGGTTAGTGTT+TGG - Chr4:84351209-84351228 MsG0480023377.01.T01:intron 50.0%
!! AAGGTGCTTAAAGAGTGCCC+CGG - Chr4:84351516-84351535 MsG0480023377.01.T01:intron 50.0%
!! ATGCAGGAATGATGGGCTCT+GGG - Chr4:84348501-84348520 MsG0480023377.01.T01:intron 50.0%
!! CAGAAGTGTGTCGGTGTTAC+GGG + Chr4:84347432-84347451 None:intergenic 50.0%
!! GAATTGTTCCGGCTAGCCTA+TGG - Chr4:84350944-84350963 MsG0480023377.01.T01:intron 50.0%
!! TCAGACGATTCGGTGCAAGA+AGG - Chr4:84347013-84347032 MsG0480023377.01.T01:intron 50.0%
!! TGAGACTCTAGCATTGGCGT+TGG + Chr4:84351702-84351721 None:intergenic 50.0%
AACAAGCTGGTAAGAGGGGG+TGG + Chr4:84349924-84349943 None:intergenic 55.0%
AATGTTAACGAGTGCCCCCG+GGG + Chr4:84351536-84351555 None:intergenic 55.0%
ACCGCCCTGTCCAACTTTAC+AGG - Chr4:84350018-84350037 MsG0480023377.01.T01:intron 55.0%
CACTTAGCAGTGTCACAGGC+AGG - Chr4:84349638-84349657 MsG0480023377.01.T01:intron 55.0%
CCCATGTCACAGATGGACAG+TGG - Chr4:84349995-84350014 MsG0480023377.01.T01:intron 55.0%
GCTGTATCGCTACAGCGTAG+CGG - Chr4:84350323-84350342 MsG0480023377.01.T01:intron 55.0%
GGCCAAAAGAATTGCAGCCG+TGG - Chr4:84351255-84351274 MsG0480023377.01.T01:intron 55.0%
TAGCAGGGAGTCCATGGCAT+AGG + Chr4:84350444-84350463 None:intergenic 55.0%
TCTTGTTAACGAGTGCCCCC+GGG - Chr4:84351389-84351408 MsG0480023377.01.T01:intron 55.0%
TTCGCGAGAAGGAGGTCAGT+TGG - Chr4:84349233-84349252 MsG0480023377.01.T01:intron 55.0%
TTCTCGGGTCGGGTAAGAAC+CGG + Chr4:84346939-84346958 None:intergenic 55.0%
! GGACGGACATTCCACTGACT+CGG + Chr4:84349751-84349770 None:intergenic 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG - Chr4:84351388-84351407 MsG0480023377.01.T01:intron 55.0%
!! AAGCACTGACACGTCGACAC+CGG - Chr4:84349414-84349433 MsG0480023377.01.T01:intron 55.0%
!! AGGTGCTTAAAGAGTGCCCC+GGG - Chr4:84351517-84351536 MsG0480023377.01.T01:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG + Chr4:84351407-84351426 None:intergenic 55.0%
!! CATGCAGGAATGATGGGCTC+TGG - Chr4:84348500-84348519 MsG0480023377.01.T01:intron 55.0%
!! GATGCTTAAAGAGTGCCCCG+GGG + Chr4:84351408-84351427 None:intergenic 55.0%
!! GCTCTGGGAAGACAACTGTG+GGG - Chr4:84348516-84348535 MsG0480023377.01.T01:intron 55.0%
!! GGATGCTTAAAGAGTGCCCC+GGG + Chr4:84351409-84351428 None:intergenic 55.0%
!! GGCTCTGGGAAGACAACTGT+GGG - Chr4:84348515-84348534 MsG0480023377.01.T01:intron 55.0%
!! GGGATGCTTAAAGAGTGCCC+CGG + Chr4:84351410-84351429 None:intergenic 55.0%
CTTGTTAACGAGTGCCCCCG+GGG - Chr4:84351390-84351409 MsG0480023377.01.T01:intron 60.0%
GGAGGGGGTCAGTTATCCTG+GGG - Chr4:84348945-84348964 MsG0480023377.01.T01:intron 60.0%
GGGAGGGGGTCAGTTATCCT+GGG - Chr4:84348944-84348963 MsG0480023377.01.T01:intron 60.0%
!! CAGGTGGAGGTGCTGTTGTG+CGG - Chr4:84351060-84351079 MsG0480023377.01.T01:intron 60.0%
!! GGGCTCTGGGAAGACAACTG+TGG - Chr4:84348514-84348533 MsG0480023377.01.T01:intron 60.0%
!! GGTGCTTAAAGAGTGCCCCG+GGG - Chr4:84351518-84351537 MsG0480023377.01.T01:intron 60.0%
!! GTGCTTAAAGAGTGCCCCGG+GGG - Chr4:84351519-84351538 MsG0480023377.01.T01:intron 60.0%
GGAGTCCATGGCATAGGCCC+TGG + Chr4:84350438-84350457 None:intergenic 65.0%
GGGGAGGGGGTCAGTTATCC+TGG - Chr4:84348943-84348962 MsG0480023377.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 84346434 84352354 84346434 ID=MsG0480023377.01;Name=MsG0480023377.01
Chr4 mRNA 84346434 84352354 84346434 ID=MsG0480023377.01.T01;Parent=MsG0480023377.01;Name=MsG0480023377.01.T01;_AED=0.49;_eAED=0.61;_QI=138|0.77|0.8|1|0.44|0.5|10|0|301
Chr4 exon 84351714 84351913 84351714 ID=MsG0480023377.01.T01:exon:5681;Parent=MsG0480023377.01.T01
Chr4 exon 84352051 84352129 84352051 ID=MsG0480023377.01.T01:exon:5680;Parent=MsG0480023377.01.T01
Chr4 exon 84352324 84352354 84352324 ID=MsG0480023377.01.T01:exon:5679;Parent=MsG0480023377.01.T01
Chr4 five_prime_UTR 84352324 84352354 84352324 ID=MsG0480023377.01.T01:five_prime_utr;Parent=MsG0480023377.01.T01
Chr4 five_prime_UTR 84352051 84352129 84352051 ID=MsG0480023377.01.T01:five_prime_utr;Parent=MsG0480023377.01.T01
Chr4 five_prime_UTR 84351886 84351913 84351886 ID=MsG0480023377.01.T01:five_prime_utr;Parent=MsG0480023377.01.T01
Chr4 CDS 84351714 84351885 84351714 ID=MsG0480023377.01.T01:cds;Parent=MsG0480023377.01.T01
Chr4 CDS 84350608 84350666 84350608 ID=MsG0480023377.01.T01:cds;Parent=MsG0480023377.01.T01
Chr4 CDS 84350151 84350173 84350151 ID=MsG0480023377.01.T01:cds;Parent=MsG0480023377.01.T01
Chr4 CDS 84349542 84349629 84349542 ID=MsG0480023377.01.T01:cds;Parent=MsG0480023377.01.T01
Chr4 CDS 84347695 84347777 84347695 ID=MsG0480023377.01.T01:cds;Parent=MsG0480023377.01.T01
Chr4 CDS 84347458 84347587 84347458 ID=MsG0480023377.01.T01:cds;Parent=MsG0480023377.01.T01
Chr4 CDS 84347060 84347138 84347060 ID=MsG0480023377.01.T01:cds;Parent=MsG0480023377.01.T01
Chr4 CDS 84346434 84346705 84346434 ID=MsG0480023377.01.T01:cds;Parent=MsG0480023377.01.T01
Chr4 mRNA 84346434 84351941 84346434 ID=MsG0480023377.01.T02;Parent=MsG0480023377.01;Name=MsG0480023377.01.T02;_AED=0.49;_eAED=0.62;_QI=56|0.71|0.75|1|0.57|0.62|8|0|301
Chr4 exon 84351714 84351941 84351714 ID=MsG0480023377.01.T02:exon:5689;Parent=MsG0480023377.01.T02
Chr4 five_prime_UTR 84351886 84351941 84351886 ID=MsG0480023377.01.T02:five_prime_utr;Parent=MsG0480023377.01.T02
Chr4 CDS 84351714 84351885 84351714 ID=MsG0480023377.01.T02:cds;Parent=MsG0480023377.01.T02
Chr4 CDS 84350608 84350666 84350608 ID=MsG0480023377.01.T02:cds;Parent=MsG0480023377.01.T02
Chr4 CDS 84350151 84350173 84350151 ID=MsG0480023377.01.T02:cds;Parent=MsG0480023377.01.T02
Chr4 CDS 84349542 84349629 84349542 ID=MsG0480023377.01.T02:cds;Parent=MsG0480023377.01.T02
Chr4 CDS 84347695 84347777 84347695 ID=MsG0480023377.01.T02:cds;Parent=MsG0480023377.01.T02
Chr4 CDS 84347458 84347587 84347458 ID=MsG0480023377.01.T02:cds;Parent=MsG0480023377.01.T02
Chr4 CDS 84347060 84347138 84347060 ID=MsG0480023377.01.T02:cds;Parent=MsG0480023377.01.T02
Chr4 CDS 84346434 84346705 84346434 ID=MsG0480023377.01.T02:cds;Parent=MsG0480023377.01.T02
Gene Sequence

>MsG0480023377.01.T01

ATGGATGCTAAAGCTGTTCAAATGTTGCATCTACCGGTTCTTACCCGACCCGAGAATTGTGTGAGAATAACCGGTTGTTCTTTGAGTCGGACCAGTAAACTGAAAAAGCTTCAGACGATTCGGTGCAAGAAGGTTTCTACGGAAGTTGCTTGTTCTTATAACAATATTCCAGCTTCAACATTGGAATCTGGAGGGCATAAGTTTCCCCTTGAGGAAGAGTTGGTTCTGAAGGGAAAGATGAGTTTCCAAAACATTGATACATTGATTGAGGAAGAGGTTGATGGAAACTCTGTAGCTGATATATTCAAGCTCTATGGAGAATCTTTCTTTCGCGAGAAGGAGACTGAGGCATTGAATAAGCTGTCCCTGATGCATAAACTTGTCATTTCTACAGGTGGAGGTGCTGTTGTGCGGCCTATTAATTGGAAATATATGCACAAGGGGGTTAGTGTTTGGTTAGATGTACCAGTGGAAGCATTGGCCAAAAGAATTGCAGCCGTGGGAACTAATTCTCGCCCTCTTCTACACGATGAAGCAGGAGATGCATACACTGCGGCTTTGATGCGTTTGTCTGATCTTTTTGAAGAGAGAGGTGAATTCTATGCCAACGCCAATGCTAGAGTCTCATTAGAAAATATAGCAACAAAACTGGGCCGAAAAGATGCGTCTGATTTGTCTCCAACTGAAATTGCAATTGAGGTCTTGCACAATTTCTGCCTCATGCCTTTAACTCCATTTCAATTTGTTAGCTTTGGGCAAACTGGAATATTCACGGATGCTAAAGCTGAATCTAAGTTCTGTATAACCGATGCGAATCTAATAATTCTTCTGTATCTTGCAGGCGCTAGAGCAAATTGGCAACTTTTTGAAGGCAGAAGATGGTGGTTATGCAAGATAGTAGTGTGA

>MsG0480023377.01.T02

ATGGATGCTAAAGCTGTTCAAATGTTGCATCTACCGGTTCTTACCCGACCCGAGAATTGTGTGAGAATAACCGGTTGTTCTTTGAGTCGGACCAGTAAACTGAAAAAGCTTCAGACGATTCGGTGCAAGAAGGTTTCTACGGAAGTTGCTTGTTCTTATAACAATATTCCAGCTTCAACATTGGAATCTGGAGGGCATAAGTTTCCCCTTGAGGAAGAGTTGGTTCTGAAGGGAAAGATGAGTTTCCAAAACATTGATACATTGATTGAGGAAGAGGTTGATGGAAACTCTGTAGCTGATATATTCAAGCTCTATGGAGAATCTTTCTTTCGCGAGAAGGAGACTGAGGCATTGAATAAGCTGTCCCTGATGCATAAACTTGTCATTTCTACAGGTGGAGGTGCTGTTGTGCGGCCTATTAATTGGAAATATATGCACAAGGGGGTTAGTGTTTGGTTAGATGTACCAGTGGAAGCATTGGCCAAAAGAATTGCAGCCGTGGGAACTAATTCTCGCCCTCTTCTACACGATGAAGCAGGAGATGCATACACTGCGGCTTTGATGCGTTTGTCTGATCTTTTTGAAGAGAGAGGTGAATTCTATGCCAACGCCAATGCTAGAGTCTCATTAGAAAATATAGCAACAAAACTGGGCCGAAAAGATGCGTCTGATTTGTCTCCAACTGAAATTGCAATTGAGGTCTTGCACAATTTCTGCCTCATGCCTTTAACTCCATTTCAATTTGTTAGCTTTGGGCAAACTGGAATATTCACGGATGCTAAAGCTGAATCTAAGTTCTGTATAACCGATGCGAATCTAATAATTCTTCTGTATCTTGCAGGCGCTAGAGCAAATTGGCAACTTTTTGAAGGCAGAAGATGGTGGTTATGCAAGATAGTAGTGTGA

Protein sequence

>MsG0480023377.01.T01

MDAKAVQMLHLPVLTRPENCVRITGCSLSRTSKLKKLQTIRCKKVSTEVACSYNNIPASTLESGGHKFPLEEELVLKGKMSFQNIDTLIEEEVDGNSVADIFKLYGESFFREKETEALNKLSLMHKLVISTGGGAVVRPINWKYMHKGVSVWLDVPVEALAKRIAAVGTNSRPLLHDEAGDAYTAALMRLSDLFEERGEFYANANARVSLENIATKLGRKDASDLSPTEIAIEVLHNFCLMPLTPFQFVSFGQTGIFTDAKAESKFCITDANLIILLYLAGARANWQLFEGRRWWLCKIVV*

>MsG0480023377.01.T02

MDAKAVQMLHLPVLTRPENCVRITGCSLSRTSKLKKLQTIRCKKVSTEVACSYNNIPASTLESGGHKFPLEEELVLKGKMSFQNIDTLIEEEVDGNSVADIFKLYGESFFREKETEALNKLSLMHKLVISTGGGAVVRPINWKYMHKGVSVWLDVPVEALAKRIAAVGTNSRPLLHDEAGDAYTAALMRLSDLFEERGEFYANANARVSLENIATKLGRKDASDLSPTEIAIEVLHNFCLMPLTPFQFVSFGQTGIFTDAKAESKFCITDANLIILLYLAGARANWQLFEGRRWWLCKIVV*