Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001008.01.T02 | KEH40440.1 | 93.13 | 131 | 9 | 0 | 4 | 134 | 86 | 216 | 9.51E-82 | 249 |
| MsG0180001008.01.T01 | XP_013466398.1 | 94.928 | 138 | 6 | 1 | 1 | 137 | 86 | 223 | 9.08E-87 | 262 |
| MsG0180001008.01.T03 | XP_013466399.1 | 92.941 | 85 | 6 | 0 | 1 | 85 | 139 | 223 | 4.02E-49 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001008.01.T01 | Q6NLQ3 | 50.376 | 133 | 66 | 0 | 4 | 136 | 90 | 222 | 8.53E-42 | 140 |
| MsG0180001008.01.T02 | Q6NLQ3 | 50 | 126 | 63 | 0 | 8 | 133 | 90 | 215 | 8.46E-39 | 133 |
| MsG0180001008.01.T03 | Q6NLQ3 | 47.619 | 84 | 44 | 0 | 1 | 84 | 139 | 222 | 8.74E-22 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001008.01.T01 | A0A072VEL1 | 94.928 | 138 | 6 | 1 | 1 | 137 | 86 | 223 | 4.33e-87 | 262 |
| MsG0180001008.01.T02 | A0A072VQP6 | 93.130 | 131 | 9 | 0 | 4 | 134 | 86 | 216 | 4.54e-82 | 249 |
| MsG0180001008.01.T03 | A0A072VF91 | 92.941 | 85 | 6 | 0 | 1 | 85 | 139 | 223 | 1.92e-49 | 164 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0180001008.01 | 0.828647 | 8.005481e-55 | 8.005522e-52 |
| MsG0180001008.01 | MsG0180001027.01 | 0.864865 | 8.940066e-65 | 2.848954e-61 |
| MsG0180001008.01 | MsG0180001029.01 | 0.823903 | 1.078114e-53 | 9.406089e-51 |
| MsG0180001008.01 | MsG0180001513.01 | 0.803917 | 2.772326e-49 | 1.410520e-46 |
| MsG0180001008.01 | MsG0180002255.01 | 0.814508 | 1.486443e-51 | 9.993509e-49 |
| MsG0180001008.01 | MsG0180003320.01 | 0.804726 | 1.880815e-49 | 9.770668e-47 |
| MsG0180001008.01 | MsG0180004232.01 | 0.829006 | 6.550754e-55 | 6.619473e-52 |
| MsG0180001008.01 | MsG0180004359.01 | 0.829796 | 4.212658e-55 | 4.357594e-52 |
| MsG0180001008.01 | MsG0280006559.01 | 0.801886 | 7.286168e-49 | 3.519458e-46 |
| MsG0180001008.01 | MsG0280006560.01 | 0.806486 | 8.036119e-50 | 4.367130e-47 |
| MsG0180001008.01 | MsG0280007922.01 | 0.838548 | 2.693902e-57 | 3.620361e-54 |
| MsG0180001008.01 | MsG0280007937.01 | 0.817148 | 3.833008e-52 | 2.769274e-49 |
| MsG0180001008.01 | MsG0280009232.01 | 0.859250 | 4.709256e-63 | 1.235616e-59 |
| MsG0180001008.01 | MsG0380011635.01 | 0.807524 | 4.846021e-50 | 2.705247e-47 |
| MsG0180001008.01 | MsG0380011636.01 | 0.809988 | 1.441486e-50 | 8.587552e-48 |
| MsG0180001008.01 | MsG0380011974.01 | 0.803751 | 3.001317e-49 | 1.520438e-46 |
| MsG0180001008.01 | MsG0380014410.01 | 0.802911 | 4.481072e-49 | 2.221696e-46 |
| MsG0180001008.01 | MsG0380015572.01 | 0.820435 | 6.870894e-53 | 5.436201e-50 |
| MsG0180001008.01 | MsG0380016299.01 | 0.864390 | 1.258561e-64 | 3.944966e-61 |
| MsG0180001008.01 | MsG0380016300.01 | 0.824255 | 8.910521e-54 | 7.851007e-51 |
| MsG0180001008.01 | MsG0480019146.01 | 0.829928 | 3.911687e-55 | 4.061142e-52 |
| MsG0180001008.01 | MsG0480019346.01 | 0.812080 | 5.074048e-51 | 3.195182e-48 |
| MsG0180001008.01 | MsG0480019842.01 | 0.809362 | 1.964535e-50 | 1.151152e-47 |
| MsG0180001008.01 | MsG0480021133.01 | 0.816976 | 4.189546e-52 | 3.012851e-49 |
| MsG0180001008.01 | MsG0480022055.01 | 0.849482 | 3.143362e-60 | 5.967184e-57 |
| MsG0180001008.01 | MsG0480022886.01 | 0.801225 | 9.957171e-49 | 4.729655e-46 |
| MsG0180001008.01 | MsG0480023432.01 | 0.829308 | 5.536668e-55 | 5.646102e-52 |
| MsG0180001008.01 | MsG0580024087.01 | 0.810661 | 1.031631e-50 | 6.255798e-48 |
| MsG0180001008.01 | MsG0580024840.01 | 0.832078 | 1.160507e-55 | 1.283415e-52 |
| MsG0180001008.01 | MsG0580025431.01 | 0.819013 | 1.451365e-52 | 1.103892e-49 |
| MsG0180001008.01 | MsG0580025507.01 | 0.801009 | 1.102178e-48 | 5.207302e-46 |
| MsG0180001008.01 | MsG0580025590.01 | 0.810642 | 1.041315e-50 | 6.311253e-48 |
| MsG0180001008.01 | MsG0580027337.01 | 0.823402 | 1.411974e-53 | 1.214393e-50 |
| MsG0180001008.01 | MsG0580027752.01 | 0.827239 | 1.746180e-54 | 1.676078e-51 |
| MsG0180001008.01 | MsG0580027753.01 | 0.814385 | 1.582794e-51 | 1.060566e-48 |
| MsG0180001008.01 | MsG0580029359.01 | 0.815423 | 9.317878e-52 | 6.421516e-49 |
| MsG0180001008.01 | MsG0580029676.01 | 0.802936 | 4.427895e-49 | 2.196635e-46 |
| MsG0180001008.01 | MsG0580029938.01 | 0.803819 | 2.905641e-49 | 1.474541e-46 |
| MsG0180001008.01 | MsG0680031474.01 | 0.809859 | 1.536666e-50 | 9.123315e-48 |
| MsG0180001008.01 | MsG0680033617.01 | 0.802465 | 5.537630e-49 | 2.714505e-46 |
| MsG0180001008.01 | MsG0680034238.01 | 0.800534 | 1.377712e-48 | 6.430537e-46 |
| MsG0180001008.01 | MsG0680034326.01 | 0.800836 | 1.195605e-48 | 5.623623e-46 |
| MsG0180001008.01 | MsG0680034354.01 | 0.823638 | 1.243661e-53 | 1.076964e-50 |
| MsG0180001008.01 | MsG0680034356.01 | 0.825306 | 5.036708e-54 | 4.573720e-51 |
| MsG0180001008.01 | MsG0680034357.01 | 0.801736 | 7.821341e-49 | 3.763289e-46 |
| MsG0180001008.01 | MsG0680034366.01 | 0.811952 | 5.413078e-51 | 3.396683e-48 |
| MsG0180001008.01 | MsG0680034367.01 | 0.803857 | 2.854204e-49 | 1.449855e-46 |
| MsG0180001008.01 | MsG0680034418.01 | 0.840904 | 6.564599e-58 | 9.486992e-55 |
| MsG0180001008.01 | MsG0680034728.01 | 0.827749 | 1.317343e-54 | 1.283267e-51 |
| MsG0180001008.01 | MsG0680034974.01 | 0.813932 | 1.992561e-51 | 1.318723e-48 |
| MsG0180001008.01 | MsG0680034978.01 | 0.810588 | 1.069807e-50 | 6.474544e-48 |
| MsG0180001008.01 | MsG0780036199.01 | 0.818653 | 1.751752e-52 | 1.318984e-49 |
| MsG0180001008.01 | MsG0780036649.01 | 0.834402 | 3.060678e-56 | 3.628416e-53 |
| MsG0180001008.01 | MsG0780036839.01 | 0.841029 | 6.086224e-58 | 8.829084e-55 |
| MsG0180001008.01 | MsG0780038307.01 | 0.803777 | 2.964756e-49 | 1.502890e-46 |
| MsG0180001008.01 | MsG0780038313.01 | 0.826286 | 2.948086e-54 | 2.752868e-51 |
| MsG0180001008.01 | MsG0780038519.01 | 0.829471 | 5.054145e-55 | 5.177574e-52 |
| MsG0180001008.01 | MsG0780038922.01 | 0.804543 | 2.054064e-49 | 1.061915e-46 |
| MsG0180001008.01 | MsG0780039855.01 | 0.807515 | 4.867422e-50 | 2.716603e-47 |
| MsG0180001008.01 | MsG0780039883.01 | 0.816698 | 4.835021e-52 | 3.450398e-49 |
| MsG0180001008.01 | MsG0780039949.01 | 0.810825 | 9.505841e-51 | 5.789712e-48 |
| MsG0180001008.01 | MsG0780039979.01 | 0.843848 | 1.088575e-58 | 1.725364e-55 |
| MsG0180001008.01 | MsG0780040497.01 | 0.854629 | 1.083645e-61 | 2.435369e-58 |
| MsG0180001008.01 | MsG0780040498.01 | 0.858214 | 9.602965e-63 | 2.432361e-59 |
| MsG0180001008.01 | MsG0880042369.01 | 0.839943 | 1.171128e-57 | 1.642803e-54 |
| MsG0180001008.01 | MsG0880043212.01 | 0.809168 | 2.162148e-50 | 1.260377e-47 |
| MsG0180001008.01 | MsG0880043906.01 | 0.822447 | 2.357359e-53 | 1.973686e-50 |
| MsG0180001008.01 | MsG0880045677.01 | 0.811278 | 7.583761e-51 | 4.674388e-48 |
| MsG0180001008.01 | MsG0880045854.01 | 0.805142 | 1.539457e-49 | 8.083030e-47 |
| MsG0180001008.01 | MsG0880046019.01 | 0.807372 | 5.220189e-50 | 2.902521e-47 |
| MsG0180001008.01 | MsG0880046273.01 | 0.836777 | 7.670973e-57 | 9.766242e-54 |
| MsG0180001008.01 | MsG0880047383.01 | 0.826298 | 2.928795e-54 | 2.735734e-51 |
| MsG0180001008.01 | MsG0880047714.01 | 0.806456 | 8.153424e-50 | 4.427636e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001008.01.T02 | MTR_1g028970 | 93.130 | 131 | 9 | 0 | 4 | 134 | 86 | 216 | 1.15e-85 | 249 |
| MsG0180001008.01.T02 | MTR_1g028970 | 89.130 | 138 | 15 | 0 | 4 | 141 | 86 | 223 | 4.56e-84 | 246 |
| MsG0180001008.01.T02 | MTR_1g028960 | 94.531 | 128 | 6 | 1 | 4 | 130 | 85 | 212 | 6.18e-83 | 243 |
| MsG0180001008.01.T02 | MTR_3g090530 | 67.939 | 131 | 41 | 1 | 5 | 134 | 20 | 150 | 4.81e-61 | 185 |
| MsG0180001008.01.T02 | MTR_3g090530 | 67.939 | 131 | 41 | 1 | 5 | 134 | 85 | 215 | 2.91e-60 | 185 |
| MsG0180001008.01.T02 | MTR_3g090530 | 67.164 | 134 | 41 | 2 | 5 | 137 | 20 | 151 | 1.38e-59 | 181 |
| MsG0180001008.01.T02 | MTR_3g090530 | 67.164 | 134 | 41 | 2 | 5 | 137 | 85 | 216 | 6.92e-59 | 182 |
| MsG0180001008.01.T02 | MTR_1g028970 | 95.000 | 80 | 4 | 0 | 4 | 83 | 86 | 165 | 1.07e-49 | 157 |
| MsG0180001008.01.T02 | MTR_3g090530 | 67.500 | 80 | 25 | 1 | 5 | 83 | 20 | 99 | 3.75e-33 | 113 |
| MsG0180001008.01.T02 | MTR_3g090530 | 67.500 | 80 | 25 | 1 | 5 | 83 | 85 | 164 | 1.43e-32 | 113 |
| MsG0180001008.01.T02 | MTR_1g075710 | 31.200 | 125 | 82 | 1 | 9 | 133 | 74 | 194 | 6.68e-21 | 84.3 |
| MsG0180001008.01.T02 | MTR_1g041495 | 29.600 | 125 | 84 | 1 | 9 | 133 | 74 | 194 | 3.48e-19 | 80.1 |
| MsG0180001008.01.T02 | MTR_1g075700 | 35.556 | 90 | 58 | 0 | 9 | 98 | 70 | 159 | 1.03e-16 | 73.2 |
| MsG0180001008.01.T02 | MTR_1g041495 | 27.612 | 134 | 84 | 2 | 9 | 133 | 74 | 203 | 3.54e-16 | 72.0 |
| MsG0180001008.01.T01 | MTR_1g028960 | 94.928 | 138 | 6 | 1 | 1 | 137 | 86 | 223 | 1.10e-90 | 262 |
| MsG0180001008.01.T01 | MTR_1g028970 | 93.431 | 137 | 9 | 0 | 1 | 137 | 87 | 223 | 3.71e-90 | 261 |
| MsG0180001008.01.T01 | MTR_1g028970 | 94.444 | 126 | 7 | 0 | 1 | 126 | 87 | 212 | 2.22e-83 | 244 |
| MsG0180001008.01.T01 | MTR_3g090530 | 68.116 | 138 | 43 | 1 | 1 | 137 | 20 | 157 | 1.38e-65 | 196 |
| MsG0180001008.01.T01 | MTR_3g090530 | 68.116 | 138 | 43 | 1 | 1 | 137 | 85 | 222 | 7.19e-65 | 197 |
| MsG0180001008.01.T01 | MTR_3g090530 | 68.504 | 127 | 39 | 1 | 1 | 126 | 20 | 146 | 3.37e-59 | 180 |
| MsG0180001008.01.T01 | MTR_3g090530 | 68.504 | 127 | 39 | 1 | 1 | 126 | 85 | 211 | 1.59e-58 | 181 |
| MsG0180001008.01.T01 | MTR_1g028970 | 94.937 | 79 | 4 | 0 | 1 | 79 | 87 | 165 | 4.35e-49 | 155 |
| MsG0180001008.01.T01 | MTR_3g090530 | 67.500 | 80 | 25 | 1 | 1 | 79 | 20 | 99 | 3.66e-33 | 113 |
| MsG0180001008.01.T01 | MTR_3g090530 | 67.500 | 80 | 25 | 1 | 1 | 79 | 85 | 164 | 1.41e-32 | 113 |
| MsG0180001008.01.T01 | MTR_1g075710 | 30.827 | 133 | 88 | 1 | 5 | 137 | 74 | 202 | 6.83e-23 | 89.4 |
| MsG0180001008.01.T01 | MTR_1g041495 | 29.323 | 133 | 90 | 1 | 5 | 137 | 74 | 202 | 8.16e-21 | 84.0 |
| MsG0180001008.01.T01 | MTR_1g041495 | 27.465 | 142 | 90 | 2 | 5 | 137 | 74 | 211 | 7.89e-18 | 76.3 |
| MsG0180001008.01.T01 | MTR_1g075700 | 35.556 | 90 | 58 | 0 | 5 | 94 | 70 | 159 | 9.51e-17 | 73.2 |
| MsG0180001008.01.T03 | MTR_1g028970 | 92.941 | 85 | 6 | 0 | 1 | 85 | 139 | 223 | 4.87e-53 | 164 |
| MsG0180001008.01.T03 | MTR_1g028960 | 93.023 | 86 | 5 | 1 | 1 | 85 | 138 | 223 | 3.47e-52 | 162 |
| MsG0180001008.01.T03 | MTR_1g028970 | 94.595 | 74 | 4 | 0 | 1 | 74 | 139 | 212 | 3.28e-46 | 147 |
| MsG0180001008.01.T03 | MTR_3g090530 | 69.412 | 85 | 26 | 0 | 1 | 85 | 73 | 157 | 2.26e-41 | 133 |
| MsG0180001008.01.T03 | MTR_3g090530 | 69.412 | 85 | 26 | 0 | 1 | 85 | 138 | 222 | 1.78e-40 | 132 |
| MsG0180001008.01.T03 | MTR_3g090530 | 70.270 | 74 | 22 | 0 | 1 | 74 | 73 | 146 | 4.54e-35 | 117 |
| MsG0180001008.01.T03 | MTR_3g090530 | 70.270 | 74 | 22 | 0 | 1 | 74 | 138 | 211 | 3.12e-34 | 116 |
| MsG0180001008.01.T03 | MTR_1g075710 | 30.588 | 85 | 55 | 1 | 1 | 85 | 122 | 202 | 2.28e-13 | 62.4 |
| MsG0180001008.01.T03 | MTR_1g028970 | 96.296 | 27 | 1 | 0 | 1 | 27 | 139 | 165 | 9.40e-13 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001008.01.T02 | AT1G21360 | 50.000 | 126 | 63 | 0 | 8 | 133 | 28 | 153 | 1.37e-40 | 133 |
| MsG0180001008.01.T02 | AT1G21360 | 50.000 | 126 | 63 | 0 | 8 | 133 | 90 | 215 | 8.63e-40 | 133 |
| MsG0180001008.01.T02 | AT3G21260 | 53.659 | 123 | 57 | 0 | 8 | 130 | 11 | 133 | 8.75e-39 | 128 |
| MsG0180001008.01.T02 | AT3G21260 | 53.659 | 123 | 57 | 0 | 8 | 130 | 16 | 138 | 1.01e-38 | 128 |
| MsG0180001008.01.T02 | AT3G21260 | 53.659 | 123 | 57 | 0 | 8 | 130 | 100 | 222 | 8.99e-38 | 128 |
| MsG0180001008.01.T02 | AT1G21360 | 57.895 | 76 | 32 | 0 | 8 | 83 | 90 | 165 | 3.64e-25 | 95.5 |
| MsG0180001008.01.T02 | AT2G33470 | 33.065 | 124 | 79 | 1 | 9 | 132 | 74 | 193 | 2.40e-20 | 83.2 |
| MsG0180001008.01.T02 | AT2G33470 | 33.065 | 124 | 79 | 1 | 9 | 132 | 74 | 193 | 2.40e-20 | 83.2 |
| MsG0180001008.01.T01 | AT1G21360 | 50.376 | 133 | 66 | 0 | 4 | 136 | 28 | 160 | 1.06e-43 | 141 |
| MsG0180001008.01.T01 | AT3G21260 | 54.135 | 133 | 61 | 0 | 4 | 136 | 11 | 143 | 7.58e-43 | 138 |
| MsG0180001008.01.T01 | AT1G21360 | 50.376 | 133 | 66 | 0 | 4 | 136 | 90 | 222 | 8.70e-43 | 140 |
| MsG0180001008.01.T01 | AT3G21260 | 54.135 | 133 | 61 | 0 | 4 | 136 | 16 | 148 | 1.08e-42 | 138 |
| MsG0180001008.01.T01 | AT3G21260 | 54.135 | 133 | 61 | 0 | 4 | 136 | 100 | 232 | 8.22e-42 | 139 |
| MsG0180001008.01.T01 | AT1G21360 | 57.895 | 76 | 32 | 0 | 4 | 79 | 90 | 165 | 4.87e-25 | 94.7 |
| MsG0180001008.01.T01 | AT2G33470 | 31.579 | 133 | 87 | 1 | 5 | 137 | 74 | 202 | 2.05e-21 | 85.5 |
| MsG0180001008.01.T01 | AT2G33470 | 31.579 | 133 | 87 | 1 | 5 | 137 | 74 | 202 | 2.05e-21 | 85.5 |
| MsG0180001008.01.T03 | AT1G21360 | 47.619 | 84 | 44 | 0 | 1 | 84 | 77 | 160 | 1.89e-23 | 87.8 |
| MsG0180001008.01.T03 | AT1G21360 | 47.619 | 84 | 44 | 0 | 1 | 84 | 139 | 222 | 8.91e-23 | 87.4 |
| MsG0180001008.01.T03 | AT3G21260 | 52.381 | 84 | 40 | 0 | 1 | 84 | 60 | 143 | 1.55e-22 | 84.7 |
| MsG0180001008.01.T03 | AT3G21260 | 52.381 | 84 | 40 | 0 | 1 | 84 | 65 | 148 | 2.07e-22 | 84.7 |
| MsG0180001008.01.T03 | AT3G21260 | 52.381 | 84 | 40 | 0 | 1 | 84 | 149 | 232 | 1.02e-21 | 85.1 |
| MsG0180001008.01.T03 | AT2G33470 | 31.765 | 85 | 54 | 1 | 1 | 85 | 122 | 202 | 3.34e-13 | 62.0 |
| MsG0180001008.01.T03 | AT2G33470 | 31.765 | 85 | 54 | 1 | 1 | 85 | 122 | 202 | 3.34e-13 | 62.0 |
Find 19 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGTTGAAATATTGAAAT+TGG | 0.200840 | 1:+14494875 | MsG0180001008.01.T01:CDS |
| TAAGCAGAAAATGCAAATAT+TGG | 0.279728 | 1:+14495554 | MsG0180001008.01.T01:CDS |
| AGTAAGCTTTGTTTATCAAT+TGG | 0.388677 | 1:+14495620 | MsG0180001008.01.T01:intron |
| GCTGCAGTAAGGCCTTTGTT+TGG | 0.415497 | 1:+14494931 | MsG0180001008.01.T01:CDS |
| GGTGGCTCTAAGATTAGTTC+CGG | 0.420560 | 1:+14495476 | MsG0180001008.01.T01:intron |
| AACAGAAGGCAATGCAAAGA+AGG | 0.452284 | 1:+14494902 | MsG0180001008.01.T01:CDS |
| CATTAAAACCATGGCATGGA+TGG | 0.453685 | 1:+14495189 | MsG0180001008.01.T01:CDS |
| ATTGATAAACAAAGCTTACT+AGG | 0.462275 | 1:-14495617 | None:intergenic |
| CAATGGATATCCTCAAGAAA+AGG | 0.520025 | 1:-14495591 | None:intergenic |
| AGGCCTTTGTTTGGCTCACA+AGG | 0.523024 | 1:+14494940 | MsG0180001008.01.T01:CDS |
| ACAGAAGGCAATGCAAAGAA+GGG | 0.552195 | 1:+14494903 | MsG0180001008.01.T01:CDS |
| GAAGGGGTCTAGCTGCAGTA+AGG | 0.554936 | 1:+14494920 | MsG0180001008.01.T01:CDS |
| CAAAGCTTACTAGGATACAA+TGG | 0.561451 | 1:-14495608 | None:intergenic |
| GATGAAATCCATCCATGCCA+TGG | 0.583812 | 1:-14495197 | None:intergenic |
| TTGAAATTGGAAGCAACAGA+AGG | 0.584098 | 1:+14494888 | MsG0180001008.01.T01:CDS |
| ATGAAATTACATTAAAACCA+TGG | 0.587709 | 1:+14495180 | MsG0180001008.01.T01:CDS |
| ATTACATTAAAACCATGGCA+TGG | 0.602589 | 1:+14495185 | MsG0180001008.01.T01:CDS |
| CAGAAGGCAATGCAAAGAAG+GGG | 0.645808 | 1:+14494904 | MsG0180001008.01.T01:CDS |
| TCACCTTGTGAGCCAAACAA+AGG | 0.647841 | 1:-14494943 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGAAGAATTTATAAAT+AGG | + | Chr1:14495035-14495054 | MsG0180001008.01.T01:intron | 10.0% |
| !! | TTTAGTTGAAATATTGAAAT+TGG | + | Chr1:14494875-14494894 | MsG0180001008.01.T01:CDS | 15.0% |
| !!! | ATTAGAGAAGTATTATTATT+AGG | - | Chr1:14494992-14495011 | None:intergenic | 15.0% |
| !! | AGGTATCATCTTATAATTTA+TGG | + | Chr1:14495055-14495074 | MsG0180001008.01.T01:intron | 20.0% |
| !! | ATGAAATTACATTAAAACCA+TGG | + | Chr1:14495180-14495199 | MsG0180001008.01.T01:CDS | 20.0% |
| !! | TGAAACGCAATATATATTTA+GGG | - | Chr1:14495456-14495475 | None:intergenic | 20.0% |
| !! | TTCAAAAATATACACACATA+AGG | - | Chr1:14495678-14495697 | None:intergenic | 20.0% |
| !! | TTTGCAAATTTACATATGAT+AGG | + | Chr1:14495425-14495444 | MsG0180001008.01.T01:intron | 20.0% |
| !!! | TTATGTGTGTATATTTTTGA+AGG | + | Chr1:14495677-14495696 | MsG0180001008.01.T01:intron | 20.0% |
| ! | AAAACAAATACACACACATA+AGG | - | Chr1:14495705-14495724 | None:intergenic | 25.0% |
| ! | AAAAGATCCTGAAAAGAAAA+TGG | + | Chr1:14495136-14495155 | MsG0180001008.01.T01:CDS | 25.0% |
| ! | AGGTAAAGTTTGCAATATTT+AGG | - | Chr1:14495658-14495677 | None:intergenic | 25.0% |
| ! | ATTGATAAACAAAGCTTACT+AGG | - | Chr1:14495620-14495639 | None:intergenic | 25.0% |
| ! | CTAAATATATATTGCGTTTC+AGG | + | Chr1:14495455-14495474 | MsG0180001008.01.T01:intron | 25.0% |
| ! | CTGAAACGCAATATATATTT+AGG | - | Chr1:14495457-14495476 | None:intergenic | 25.0% |
| ! | GGTAAAGTTTGCAATATTTA+GGG | - | Chr1:14495657-14495676 | None:intergenic | 25.0% |
| ! | TAAGCAGAAAATGCAAATAT+TGG | + | Chr1:14495554-14495573 | MsG0180001008.01.T01:CDS | 25.0% |
| ! | TAGTATTTCATGCTATTAGA+TGG | + | Chr1:14495273-14495292 | MsG0180001008.01.T01:intron | 25.0% |
| ! | TTTGCAGAGATTATATAACT+TGG | + | Chr1:14495722-14495741 | MsG0180001008.01.T01:intron | 25.0% |
| !! | TCAATGAATGTTTTACTTTC+CGG | - | Chr1:14495498-14495517 | None:intergenic | 25.0% |
| !!! | AGTAAGCTTTGTTTATCAAT+TGG | + | Chr1:14495620-14495639 | MsG0180001008.01.T01:intron | 25.0% |
| AATATATATTGCGTTTCAGG+TGG | + | Chr1:14495458-14495477 | MsG0180001008.01.T01:intron | 30.0% | |
| ATTACATTAAAACCATGGCA+TGG | + | Chr1:14495185-14495204 | MsG0180001008.01.T01:CDS | 30.0% | |
| ! | ACTTTCTCCATTTTCTTTTC+AGG | - | Chr1:14495146-14495165 | None:intergenic | 30.0% |
| CAAAGCTTACTAGGATACAA+TGG | - | Chr1:14495611-14495630 | None:intergenic | 35.0% | |
| CAATGGATATCCTCAAGAAA+AGG | - | Chr1:14495594-14495613 | None:intergenic | 35.0% | |
| TAGTATTTGTAACAACGACG+AGG | - | Chr1:14495114-14495133 | None:intergenic | 35.0% | |
| TTGAAATTGGAAGCAACAGA+AGG | + | Chr1:14494888-14494907 | MsG0180001008.01.T01:CDS | 35.0% | |
| ! | TTTTCTGCTTAAGCATGTCA+CGG | - | Chr1:14495545-14495564 | None:intergenic | 35.0% |
| AACAGAAGGCAATGCAAAGA+AGG | + | Chr1:14494902-14494921 | MsG0180001008.01.T01:CDS | 40.0% | |
| ACAGAAGGCAATGCAAAGAA+GGG | + | Chr1:14494903-14494922 | MsG0180001008.01.T01:CDS | 40.0% | |
| CATTAAAACCATGGCATGGA+TGG | + | Chr1:14495189-14495208 | MsG0180001008.01.T01:CDS | 40.0% | |
| CAGAAGGCAATGCAAAGAAG+GGG | + | Chr1:14494904-14494923 | MsG0180001008.01.T01:CDS | 45.0% | |
| GATGAAATCCATCCATGCCA+TGG | - | Chr1:14495200-14495219 | None:intergenic | 45.0% | |
| TCACCTTGTGAGCCAAACAA+AGG | - | Chr1:14494946-14494965 | None:intergenic | 45.0% | |
| ! | TCTGCTTGTGCCTTTTCTTG+AGG | + | Chr1:14495581-14495600 | MsG0180001008.01.T01:CDS | 45.0% |
| !! | GGTGGCTCTAAGATTAGTTC+CGG | + | Chr1:14495476-14495495 | MsG0180001008.01.T01:intron | 45.0% |
| !! | TGGTGCTGCATATATTCTGC+AGG | + | Chr1:14495075-14495094 | MsG0180001008.01.T01:intron | 45.0% |
| !!! | TCTATTTTTATAAAATATTT+AGG | + | Chr1:14495351-14495370 | MsG0180001008.01.T01:intron | 5.0% |
| ACAACGACGAGGTGAAATCC+AGG | - | Chr1:14495103-14495122 | None:intergenic | 50.0% | |
| CAACGACGAGGTGAAATCCA+GGG | - | Chr1:14495102-14495121 | None:intergenic | 50.0% | |
| GCATATATTCTGCAGGACCC+TGG | + | Chr1:14495082-14495101 | MsG0180001008.01.T01:intron | 50.0% | |
| GCTGCAGTAAGGCCTTTGTT+TGG | + | Chr1:14494931-14494950 | MsG0180001008.01.T01:CDS | 50.0% | |
| ! | AGGCCTTTGTTTGGCTCACA+AGG | + | Chr1:14494940-14494959 | MsG0180001008.01.T01:CDS | 50.0% |
| GAAGGGGTCTAGCTGCAGTA+AGG | + | Chr1:14494920-14494939 | MsG0180001008.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 14494852 | 14495764 | 14494852 | ID=MsG0180001008.01;Name=MsG0180001008.01 |
| Chr1 | mRNA | 14494864 | 14495764 | 14494864 | ID=MsG0180001008.01.T01;Parent=MsG0180001008.01;Name=MsG0180001008.01.T01;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|0|0|4|0|137 |
| Chr1 | exon | 14494864 | 14494961 | 14494864 | ID=MsG0180001008.01.T01:exon:9867;Parent=MsG0180001008.01.T01 |
| Chr1 | CDS | 14494864 | 14494961 | 14494864 | ID=MsG0180001008.01.T01:cds;Parent=MsG0180001008.01.T01 |
| Chr1 | CDS | 14495097 | 14495232 | 14495097 | ID=MsG0180001008.01.T01:cds;Parent=MsG0180001008.01.T01 |
| Chr1 | CDS | 14495477 | 14495620 | 14495477 | ID=MsG0180001008.01.T01:cds;Parent=MsG0180001008.01.T01 |
| Chr1 | CDS | 14495729 | 14495764 | 14495729 | ID=MsG0180001008.01.T01:cds;Parent=MsG0180001008.01.T01 |
| Chr1 | mRNA | 14494852 | 14495659 | 14494852 | ID=MsG0180001008.01.T02;Parent=MsG0180001008.01;Name=MsG0180001008.01.T02;_AED=0.21;_eAED=0.22;_QI=0|0|0|1|0|0|3|0|142 |
| Chr1 | exon | 14494852 | 14494961 | 14494852 | ID=MsG0180001008.01.T02:exon:9871;Parent=MsG0180001008.01.T02 |
| Chr1 | exon | 14495477 | 14495659 | 14495477 | ID=MsG0180001008.01.T02:exon:9872;Parent=MsG0180001008.01.T02 |
| Chr1 | CDS | 14494852 | 14494961 | 14494852 | ID=MsG0180001008.01.T02:cds;Parent=MsG0180001008.01.T02 |
| Chr1 | CDS | 14495097 | 14495232 | 14495097 | ID=MsG0180001008.01.T02:cds;Parent=MsG0180001008.01.T02 |
| Chr1 | CDS | 14495477 | 14495659 | 14495477 | ID=MsG0180001008.01.T02:cds;Parent=MsG0180001008.01.T02 |
| Chr1 | mRNA | 14495155 | 14495764 | 14495155 | ID=MsG0180001008.01.T03;Parent=MsG0180001008.01;Name=MsG0180001008.01.T03;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0|0|3|0|85 |
| Chr1 | exon | 14495155 | 14495232 | 14495155 | ID=MsG0180001008.01.T03:exon:9873;Parent=MsG0180001008.01.T03 |
| Chr1 | CDS | 14495155 | 14495232 | 14495155 | ID=MsG0180001008.01.T03:cds;Parent=MsG0180001008.01.T03 |
| Chr1 | CDS | 14495477 | 14495620 | 14495477 | ID=MsG0180001008.01.T03:cds;Parent=MsG0180001008.01.T03 |
| Chr1 | CDS | 14495729 | 14495764 | 14495729 | ID=MsG0180001008.01.T03:cds;Parent=MsG0180001008.01.T03 |
| Gene Sequence |
| Protein sequence |
