AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034481.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034481.01.T01 MTR_6g069620 83.898 118 1 1 20 137 17 116 1.04e-59 187
MsG0680034481.01.T01 MTR_6g069620 83.898 118 1 1 20 137 17 116 5.51e-59 188
MsG0680034481.01.T01 MTR_6g069620 73.118 93 17 1 119 203 212 304 8.28e-40 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034481.01.T01 AT1G48550 57.724 123 32 2 20 140 21 125 4.43e-38 134
MsG0680034481.01.T01 AT1G48550 68.116 69 22 0 135 203 239 307 1.28e-29 112
MsG0680034481.01.T01 AT1G48550 56.154 130 36 3 20 146 21 132 2.04e-37 132
MsG0680034481.01.T01 AT1G48550 68.116 69 22 0 135 203 242 310 1.32e-29 112

Find 44 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACCCGAACCGATCTTTC+TGG 0.197124 6:-88319408 None:intergenic
CAAAGGATCCGTTAACTTAC+AGG 0.276276 6:+88317224 MsG0680034481.01.T01:CDS
TGTCTAAGATTCAAAGAAAA+TGG 0.327874 6:-88319936 None:intergenic
TTTCCAGTTGTTATTGTTCT+CGG 0.336122 6:+88316807 MsG0680034481.01.T01:CDS
AAGGTTCGTGGTGGATCAGC+TGG 0.337904 6:+88317408 MsG0680034481.01.T01:intron
ACCTGTCCAACAATCTTTGC+CGG 0.345775 6:+88321453 MsG0680034481.01.T01:CDS
AATATGTCAACTTACACAAT+TGG 0.363947 6:-88317468 None:intergenic
AACCGATCTTTCTGGAAGAT+TGG 0.365965 6:-88319400 None:intergenic
CAGTCTTCAATTTCACACTA+TGG 0.374328 6:+88317186 MsG0680034481.01.T01:CDS
GGGGTTGTTGAGTCATTCTA+TGG 0.421740 6:+88317429 MsG0680034481.01.T01:CDS
CTCAAGAACTCCAAGACTTT+GGG 0.426788 6:+88322014 MsG0680034481.01.T01:CDS
CGGGGCAGTATTACATAGAT+AGG 0.430766 6:-88321423 None:intergenic
ACTCAAGAACTCCAAGACTT+TGG 0.442433 6:+88322013 MsG0680034481.01.T01:CDS
TCTTCCAGAAAGATCGGTTC+GGG 0.461515 6:+88319404 MsG0680034481.01.T01:CDS
GTACCGAGAACAATAACAAC+TGG 0.462626 6:-88316810 None:intergenic
TCAACTTACACAATTGGGAT+TGG 0.468867 6:-88317462 None:intergenic
ATATGTCAACTTACACAATT+GGG 0.471626 6:-88317467 None:intergenic
CCCGGCAAAGATTGTTGGAC+AGG 0.487120 6:-88321454 None:intergenic
ATCTTCCAGAAAGATCGGTT+CGG 0.487173 6:+88319403 MsG0680034481.01.T01:CDS
GAGTGGTACCTGTAAGTTAA+CGG 0.488292 6:-88317232 None:intergenic
AGATAGGAAGAGTCAAATTA+CGG 0.490245 6:-88321407 None:intergenic
AGGTTCGTGGTGGATCAGCT+GGG 0.493318 6:+88317409 MsG0680034481.01.T01:intron
ACATACCCGGCAAAGATTGT+TGG 0.514276 6:-88321459 None:intergenic
TGGCGCAGATATTAGTATCC+AGG 0.515306 6:+88319995 MsG0680034481.01.T01:CDS
GGAATTCGTCTTACTATCAA+AGG 0.526521 6:+88317207 MsG0680034481.01.T01:CDS
TGTTGGACAGGTCAAAAGAC+GGG 0.532186 6:-88321442 None:intergenic
GATACACCTACCCAAAGTCT+TGG 0.533366 6:-88322024 None:intergenic
CCTGTCCAACAATCTTTGCC+GGG 0.539252 6:+88321454 MsG0680034481.01.T01:CDS
GTTGACACATTGGAGAAGGC+TGG 0.545960 6:-88316778 None:intergenic
GCAATTTAGATAGCTCTGAC+TGG 0.553859 6:-88321978 None:intergenic
GAAAATTGCTGTTGACACAT+TGG 0.554191 6:-88316788 None:intergenic
GTCCAATCTTCCAGAAAGAT+CGG 0.554293 6:+88319398 MsG0680034481.01.T01:CDS
TTTAGATAGCTCTGACTGGA+AGG 0.555872 6:-88321974 None:intergenic
TTGACACATTGGAGAAGGCT+GGG 0.566942 6:-88316777 None:intergenic
TTTGTTGAGCAGATAGCAGA+CGG 0.578739 6:+88321375 MsG0680034481.01.T01:intron
TGCTGTTGACACATTGGAGA+AGG 0.593920 6:-88316782 None:intergenic
TTGTTGGACAGGTCAAAAGA+CGG 0.594497 6:-88321443 None:intergenic
ACTGATCAGTGATTAGAATG+AGG 0.604253 6:-88322057 None:intergenic
GGATACTAATATCTGCGCCA+TGG 0.619919 6:-88319992 None:intergenic
GGTTCGTGGTGGATCAGCTG+GGG 0.668949 6:+88317410 MsG0680034481.01.T01:intron
AAACAGGAAAAGGACAGTTG+AGG 0.675695 6:+88319376 MsG0680034481.01.T01:intron
GATCGGTTCGGGTACAACAG+AGG 0.685244 6:+88319415 MsG0680034481.01.T01:CDS
AGAACTCCAAGACTTTGGGT+AGG 0.686528 6:+88322018 MsG0680034481.01.T01:CDS
GTTGGACAGGTCAAAAGACG+GGG 0.704001 6:-88321441 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACATAAAAATAAAGAAT+AGG - Chr6:88320441-88320460 None:intergenic 10.0%
!! TAGTTTAATAATTAATCATT+CGG - Chr6:88319080-88319099 None:intergenic 10.0%
!!! AAAGTGTTTAAAAAAATAAT+TGG - Chr6:88319784-88319803 None:intergenic 10.0%
!! AAAAAAAAAAGAGAAAATAG+AGG + Chr6:88318520-88318539 MsG0680034481.01.T01:intron 15.0%
!! AAAAAAATCTAATTAAGATC+CGG + Chr6:88317865-88317884 MsG0680034481.01.T01:intron 15.0%
!! AAACATGTTTAACAAATTAT+GGG + Chr6:88317972-88317991 MsG0680034481.01.T01:intron 15.0%
!! AAATATGAAAAATTGCAATT+AGG + Chr6:88316868-88316887 MsG0680034481.01.T01:intron 15.0%
!! AAGTTAGTTAATTAGATATA+TGG - Chr6:88319281-88319300 None:intergenic 15.0%
!! AATAAAAGAGATAAAAACAA+TGG - Chr6:88320197-88320216 None:intergenic 15.0%
!! AATATGAAAAATTGCAATTA+GGG + Chr6:88316869-88316888 MsG0680034481.01.T01:intron 15.0%
!! TAAACATGTTTAACAAATTA+TGG + Chr6:88317971-88317990 MsG0680034481.01.T01:intron 15.0%
!! TTCTTAAATTAAAAGAAGTT+AGG + Chr6:88321728-88321747 MsG0680034481.01.T01:intron 15.0%
!!! ACTTAATTTGAGTTTATTTA+CGG - Chr6:88317782-88317801 None:intergenic 15.0%
!!! TTATGTTTTATAATCAGATT+GGG - Chr6:88320645-88320664 None:intergenic 15.0%
!!! TTTAAAATAACATTTTTACC+TGG - Chr6:88320016-88320035 None:intergenic 15.0%
!!! TTTATGTTTTATAATCAGAT+TGG - Chr6:88320646-88320665 None:intergenic 15.0%
!! AAATAGAGAGTTAATATTTC+AGG - Chr6:88318901-88318920 None:intergenic 20.0%
!! AAGTTTCTCTGTTTAATATT+TGG + Chr6:88319856-88319875 MsG0680034481.01.T01:intron 20.0%
!! AATCATCAAGAAAAAAATTC+AGG - Chr6:88317122-88317141 None:intergenic 20.0%
!! ACATGTTTATGTAATATCAA+TGG - Chr6:88317960-88317979 None:intergenic 20.0%
!! AGATTACTAGTAGTATAATA+AGG + Chr6:88317528-88317547 MsG0680034481.01.T01:intron 20.0%
!! ATATCTCCATAAATAGTTAT+CGG + Chr6:88321651-88321670 MsG0680034481.01.T01:intron 20.0%
!! ATCATCAAGAAAAAAATTCA+GGG - Chr6:88317121-88317140 None:intergenic 20.0%
!! CATTGATAAATATTCATCAA+CGG - Chr6:88318318-88318337 None:intergenic 20.0%
!! TAAGAAGAGAAGTAAAAAAT+AGG - Chr6:88321714-88321733 None:intergenic 20.0%
!! TATATAAATAGAGAATATCG+AGG + Chr6:88318475-88318494 MsG0680034481.01.T01:intron 20.0%
!! TTCATTATTGAAAGTGATAA+AGG + Chr6:88320399-88320418 MsG0680034481.01.T01:intron 20.0%
!! TTTGTAACATTTCATGAATA+TGG + Chr6:88321870-88321889 MsG0680034481.01.T01:intron 20.0%
!!! AATTTTGAACTCAATTGAAA+AGG - Chr6:88321941-88321960 None:intergenic 20.0%
!!! ATTTTGAACTCAATTGAAAA+GGG - Chr6:88321940-88321959 None:intergenic 20.0%
!!! CATAATTTTTTTTGTATGAG+TGG - Chr6:88317252-88317271 None:intergenic 20.0%
!!! TATTTCTTTGATGATTTTGA+AGG + Chr6:88317389-88317408 MsG0680034481.01.T01:intron 20.0%
!!! TCTCTTTTTTTTTTTTTGCT+TGG - Chr6:88318514-88318533 None:intergenic 20.0%
! AAAGAGATAAAAACAATGGT+CGG - Chr6:88320193-88320212 None:intergenic 25.0%
! AAGCAAAAAAATAGAGGAAA+CGG + Chr6:88318556-88318575 MsG0680034481.01.T01:intron 25.0%
! AATAAGCCGATAACTATTTA+TGG - Chr6:88321660-88321679 None:intergenic 25.0%
! AATATGTCAACTTACACAAT+TGG - Chr6:88317471-88317490 None:intergenic 25.0%
! AATGTACTTAAAAGAAGTCT+TGG + Chr6:88319039-88319058 MsG0680034481.01.T01:intron 25.0%
! ACTTATAGTTTATTTGAGAG+CGG + Chr6:88320946-88320965 MsG0680034481.01.T01:intron 25.0%
! AGTTAATTAGATATATGGCT+TGG - Chr6:88319276-88319295 None:intergenic 25.0%
! ATATGTCAACTTACACAATT+GGG - Chr6:88317470-88317489 None:intergenic 25.0%
! GCTTTGATATTTATTGACAA+TGG - Chr6:88319584-88319603 None:intergenic 25.0%
! GTGTGTTTAGTTATTAGTTA+TGG - Chr6:88321504-88321523 None:intergenic 25.0%
! GTTTAACTAGATGAAGAAAT+AGG - Chr6:88319212-88319231 None:intergenic 25.0%
! TCTCTATTTATATATCTCAC+CGG - Chr6:88318469-88318488 None:intergenic 25.0%
! TGTAAATGTTGTAAACTCTA+GGG - Chr6:88320088-88320107 None:intergenic 25.0%
! TTACTCTATACTCAATTTAG+AGG + Chr6:88318928-88318947 MsG0680034481.01.T01:intron 25.0%
! TTATCAGTAAGAATCAAACT+CGG + Chr6:88320060-88320079 MsG0680034481.01.T01:intron 25.0%
! TTCAACTATATAACATATCG+CGG - Chr6:88318077-88318096 None:intergenic 25.0%
!! ACCTCTGATTTTTAAATCAA+TGG + Chr6:88318845-88318864 MsG0680034481.01.T01:intron 25.0%
!! AGTTACAAATCGAGATTTTT+AGG - Chr6:88320701-88320720 None:intergenic 25.0%
!! ATATACAACTTGTTTGAGTT+TGG + Chr6:88321798-88321817 MsG0680034481.01.T01:intron 25.0%
!! ATTGAATTTGACTTCTCTAA+AGG + Chr6:88318745-88318764 MsG0680034481.01.T01:intron 25.0%
!! CGTTGATGAATATTTATCAA+TGG + Chr6:88318316-88318335 MsG0680034481.01.T01:intron 25.0%
!! GTCAATCAAATTTTTGCAAA+AGG - Chr6:88317307-88317326 None:intergenic 25.0%
!! TGTCTAAGATTCAAAGAAAA+TGG - Chr6:88319939-88319958 None:intergenic 25.0%
!! TTGAATTTGACTTCTCTAAA+GGG + Chr6:88318746-88318765 MsG0680034481.01.T01:intron 25.0%
!! TTTTACTCAGAAATCTAATC+AGG + Chr6:88318237-88318256 MsG0680034481.01.T01:intron 25.0%
!! TTTTGGATGAAAAACGTAAT+AGG + Chr6:88319321-88319340 MsG0680034481.01.T01:intron 25.0%
!!! ACCATTGATTTAAAAATCAG+AGG - Chr6:88318849-88318868 None:intergenic 25.0%
!!! AGAAATTTTAAGGGATTAGA+AGG + Chr6:88316834-88316853 MsG0680034481.01.T01:intron 25.0%
!!! ATTTGGACTTATGACTTTTT+TGG + Chr6:88321592-88321611 MsG0680034481.01.T01:intron 25.0%
!!! CTAATTTGTTTATCCAAACA+TGG + Chr6:88321025-88321044 MsG0680034481.01.T01:intron 25.0%
!!! CTACGATATTTTAGTCTTTT+TGG + Chr6:88319304-88319323 MsG0680034481.01.T01:intron 25.0%
!!! CTACTTAAAGCAGTTTTATA+TGG + Chr6:88319469-88319488 MsG0680034481.01.T01:CDS 25.0%
!!! TCTATTTGTTTGTTGTCTAA+TGG + Chr6:88319610-88319629 MsG0680034481.01.T01:intron 25.0%
!!! TCTTGATGATTTGAATTTTC+AGG + Chr6:88317131-88317150 MsG0680034481.01.T01:intron 25.0%
!!! TTGAAAGTATTGTCAAATAG+TGG + Chr6:88318092-88318111 MsG0680034481.01.T01:intron 25.0%
!!! TTTAAATCAATGGTTGATGA+TGG + Chr6:88318855-88318874 MsG0680034481.01.T01:intron 25.0%
ACGAGTTCACAAAATTTACT+CGG + Chr6:88319748-88319767 MsG0680034481.01.T01:intron 30.0%
AGAGAAAATAGAGGAAAAAC+AGG + Chr6:88318529-88318548 MsG0680034481.01.T01:intron 30.0%
AGAGTTAATATTTCAGGATC+CGG - Chr6:88318895-88318914 None:intergenic 30.0%
AGATAGGAAGAGTCAAATTA+CGG - Chr6:88321410-88321429 None:intergenic 30.0%
AGATCATGTACATTCTTTGA+AGG - Chr6:88320622-88320641 None:intergenic 30.0%
AGCAAAAAAATAGAGGAAAC+GGG + Chr6:88318557-88318576 MsG0680034481.01.T01:intron 30.0%
AGCTATTCAACACAACATAA+CGG - Chr6:88319709-88319728 None:intergenic 30.0%
ATACGAAGTTACTGTTGAAT+AGG + Chr6:88321105-88321124 MsG0680034481.01.T01:intron 30.0%
ATTACTAATGTCTCTTCTGT+TGG + Chr6:88320474-88320493 MsG0680034481.01.T01:intron 30.0%
ATTGTCTTCTAAACAGGAAA+AGG + Chr6:88319366-88319385 MsG0680034481.01.T01:intron 30.0%
CAAAACTTACAGTTAACACA+AGG - Chr6:88319898-88319917 None:intergenic 30.0%
CCAGTTGAATTTGAACAAAA+GGG + Chr6:88317327-88317346 MsG0680034481.01.T01:intron 30.0%
CTAGTAGTATAATAAGGCTT+TGG + Chr6:88317534-88317553 MsG0680034481.01.T01:intron 30.0%
CTTATGATTGTCTTCTAAAC+AGG + Chr6:88319360-88319379 MsG0680034481.01.T01:intron 30.0%
CTTCTTCCTGAATTAAAATC+CGG + Chr6:88320584-88320603 MsG0680034481.01.T01:intron 30.0%
GAACAGTTGAACTCTATTAA+GGG + Chr6:88320787-88320806 MsG0680034481.01.T01:intron 30.0%
GCTAATTTGAGCTTATCTAT+TGG + Chr6:88320823-88320842 MsG0680034481.01.T01:intron 30.0%
GGAAACAAGCAAAAAAATAG+AGG + Chr6:88318550-88318569 MsG0680034481.01.T01:intron 30.0%
GGATCAATGGAAAAAGTTTA+TGG + Chr6:88321077-88321096 MsG0680034481.01.T01:intron 30.0%
GTGTAAATGTTGTAAACTCT+AGG - Chr6:88320089-88320108 None:intergenic 30.0%
TATTAAGGGTCTGTTTGAAT+TGG + Chr6:88320801-88320820 MsG0680034481.01.T01:intron 30.0%
TCAGAAATCTAATCAGGATT+AGG + Chr6:88318243-88318262 MsG0680034481.01.T01:intron 30.0%
TCATTATGATGTGATCAGAT+AGG + Chr6:88319014-88319033 MsG0680034481.01.T01:intron 30.0%
TCTTAAGTAGGTTCTTAAGT+AGG + Chr6:88318442-88318461 MsG0680034481.01.T01:intron 30.0%
TGAACAGTTGAACTCTATTA+AGG + Chr6:88320786-88320805 MsG0680034481.01.T01:intron 30.0%
TGAATGTCAATTGACTGAAT+TGG - Chr6:88321219-88321238 None:intergenic 30.0%
TTAAGCTCTTCAGATATCTT+AGG + Chr6:88320908-88320927 MsG0680034481.01.T01:intron 30.0%
TTATCTATTGGCATAAGTAG+TGG + Chr6:88320835-88320854 MsG0680034481.01.T01:intron 30.0%
TTGTTATACACAATGTAGTC+AGG - Chr6:88318706-88318725 None:intergenic 30.0%
! AATGATGACGTACACTTATA+TGG - Chr6:88318962-88318981 None:intergenic 30.0%
! AGATTTTATGAGACTTTCCA+TGG + Chr6:88319975-88319994 MsG0680034481.01.T01:CDS 30.0%
! CCTTTTGTTCAAATTCAACT+GGG - Chr6:88317329-88317348 None:intergenic 30.0%
! CTCGGTACAAGAAATTTTAA+GGG + Chr6:88316825-88316844 MsG0680034481.01.T01:intron 30.0%
! TAAAGCATCAATTGAAAGCA+AGG - Chr6:88319682-88319701 None:intergenic 30.0%
! TAGTATAATAAGGCTTTGGT+TGG + Chr6:88317538-88317557 MsG0680034481.01.T01:intron 30.0%
! TCTCGGTACAAGAAATTTTA+AGG + Chr6:88316824-88316843 MsG0680034481.01.T01:intron 30.0%
! TTTCCAGTTGTTATTGTTCT+CGG + Chr6:88316807-88316826 MsG0680034481.01.T01:CDS 30.0%
! TTTTATCCATGATCTTCGAT+TGG + Chr6:88318145-88318164 MsG0680034481.01.T01:intron 30.0%
!! AACAAAAGGGTGTTTGAATT+TGG + Chr6:88317340-88317359 MsG0680034481.01.T01:intron 30.0%
!! AATTTTCAGGAACTTCTAGA+AGG + Chr6:88317144-88317163 MsG0680034481.01.T01:intron 30.0%
!! ACAAAAGGGTGTTTGAATTT+GGG + Chr6:88317341-88317360 MsG0680034481.01.T01:intron 30.0%
!! ACTCTAAATTGTTGACTCAA+AGG + Chr6:88321552-88321571 MsG0680034481.01.T01:intron 30.0%
!! ATTGTTTGTTGTGCATTCAT+AGG + Chr6:88317504-88317523 MsG0680034481.01.T01:intron 30.0%
!! CTCTAAATTGTTGACTCAAA+GGG + Chr6:88321553-88321572 MsG0680034481.01.T01:intron 30.0%
!! GCTTATTTTCGTAGGTTTAT+AGG + Chr6:88321673-88321692 MsG0680034481.01.T01:intron 30.0%
!! TGTTTTTATCAGCAAAGCTT+AGG + Chr6:88319820-88319839 MsG0680034481.01.T01:intron 30.0%
!! TTGTTTGTTGTGCATTCATA+GGG + Chr6:88317505-88317524 MsG0680034481.01.T01:intron 30.0%
!!! CTTATGACTTTTTTGGAACT+TGG + Chr6:88321599-88321618 MsG0680034481.01.T01:intron 30.0%
!!! GATTTTAATTCAGGAAGAAG+AGG - Chr6:88320584-88320603 None:intergenic 30.0%
!!! TTGTTTTTATGTTCCTTCAC+CGG - Chr6:88318407-88318426 None:intergenic 30.0%
AAGATAGAGCAAAAACGAAC+CGG + Chr6:88318610-88318629 MsG0680034481.01.T01:intron 35.0%
ACATTACTCAAGACACTCAA+CGG + Chr6:88320555-88320574 MsG0680034481.01.T01:intron 35.0%
ACGTAACACAGTTCTTAAGT+AGG + Chr6:88318430-88318449 MsG0680034481.01.T01:intron 35.0%
AGAATATCGAGGAAACATAG+AGG + Chr6:88318486-88318505 MsG0680034481.01.T01:intron 35.0%
AGAGAGAGAGTTATACAGAA+GGG - Chr6:88317008-88317027 None:intergenic 35.0%
AGATCCTACATAGGATTGAT+CGG + Chr6:88318381-88318400 MsG0680034481.01.T01:intron 35.0%
AGGCAACATTGCATAATCTT+TGG - Chr6:88319149-88319168 None:intergenic 35.0%
ATATGGCAGACTGAATCTTA+AGG + Chr6:88321887-88321906 MsG0680034481.01.T01:intron 35.0%
ATGTAAAAGATGACCATCTC+TGG - Chr6:88320539-88320558 None:intergenic 35.0%
CAAGTCAGTATTGCAATGTT+GGG + Chr6:88319183-88319202 MsG0680034481.01.T01:intron 35.0%
CAGTCTTCAATTTCACACTA+TGG + Chr6:88317186-88317205 MsG0680034481.01.T01:CDS 35.0%
CATGTATCACCAATGAAGTT+AGG + Chr6:88318354-88318373 MsG0680034481.01.T01:intron 35.0%
CCCAGTTGAATTTGAACAAA+AGG + Chr6:88317326-88317345 MsG0680034481.01.T01:intron 35.0%
GGAATTCGTCTTACTATCAA+AGG + Chr6:88317207-88317226 MsG0680034481.01.T01:CDS 35.0%
GGTGAAGGAACATAAAAACA+AGG + Chr6:88318406-88318425 MsG0680034481.01.T01:intron 35.0%
TAAATCACTATCAGCAACGA+CGG + Chr6:88320374-88320393 MsG0680034481.01.T01:intron 35.0%
TAAGTAGTGGCAAGATTGTT+TGG + Chr6:88320848-88320867 MsG0680034481.01.T01:intron 35.0%
TATAGAAGCTATCAATCACC+AGG - Chr6:88320315-88320334 None:intergenic 35.0%
TCAACTTACACAATTGGGAT+TGG - Chr6:88317465-88317484 None:intergenic 35.0%
TCAAGTCAGTATTGCAATGT+TGG + Chr6:88319182-88319201 MsG0680034481.01.T01:intron 35.0%
TCGAAGATCATGGATAAAAG+TGG - Chr6:88318144-88318163 None:intergenic 35.0%
TTAAGTCAATCCAGACAAAC+AGG + Chr6:88317796-88317815 MsG0680034481.01.T01:intron 35.0%
TTGAAGGTAAATCAACACAC+CGG - Chr6:88320606-88320625 None:intergenic 35.0%
! ACTGTTGAATAGGTGGATTT+CGG + Chr6:88321115-88321134 MsG0680034481.01.T01:intron 35.0%
! ACTTGTTTGAGTTTGGACTT+TGG + Chr6:88321805-88321824 MsG0680034481.01.T01:intron 35.0%
! CATGGATAAAAGTGGTTTGT+TGG - Chr6:88318136-88318155 None:intergenic 35.0%
! CCCTTTTGTTCAAATTCAAC+TGG - Chr6:88317330-88317349 None:intergenic 35.0%
! GAAAATTGCTGTTGACACAT+TGG - Chr6:88316791-88316810 None:intergenic 35.0%
! GACTTGATACTGTTTTCATG+AGG - Chr6:88319169-88319188 None:intergenic 35.0%
! TTCTGTTGGTGGAAAATTTC+AGG + Chr6:88320488-88320507 MsG0680034481.01.T01:intron 35.0%
!! GTAGGTTTATAGGCTTTGTT+TGG + Chr6:88321683-88321702 MsG0680034481.01.T01:intron 35.0%
!! GTGTTTGGAAGAGCTTTATT+TGG + Chr6:88321575-88321594 MsG0680034481.01.T01:intron 35.0%
!! TTGATGATTTTGAAGGTTCG+TGG + Chr6:88317396-88317415 MsG0680034481.01.T01:intron 35.0%
!!! AACACACCGGATTTTAATTC+AGG - Chr6:88320593-88320612 None:intergenic 35.0%
!!! AGTTATCGGCTTATTTTCGT+AGG + Chr6:88321665-88321684 MsG0680034481.01.T01:intron 35.0%
AAACAGGAAAAGGACAGTTG+AGG + Chr6:88319376-88319395 MsG0680034481.01.T01:intron 40.0%
ACAGTTAGCTCACCATTAAG+AGG - Chr6:88321180-88321199 None:intergenic 40.0%
ACTAATGTCTCTTCTGTTGG+TGG + Chr6:88320477-88320496 MsG0680034481.01.T01:intron 40.0%
ACTCAAGAACTCCAAGACTT+TGG + Chr6:88322013-88322032 MsG0680034481.01.T01:CDS 40.0%
ACTGTGACATTGGAAGTTTG+AGG - Chr6:88316904-88316923 None:intergenic 40.0%
AGTAGGTTCTTAAGTAGGAC+CGG + Chr6:88318447-88318466 MsG0680034481.01.T01:intron 40.0%
ATCTTCCAGAAAGATCGGTT+CGG + Chr6:88319403-88319422 MsG0680034481.01.T01:CDS 40.0%
ATGGCATGAAACTGTGACAT+TGG - Chr6:88316914-88316933 None:intergenic 40.0%
ATGTCACAGTTTCATGCCAT+TGG + Chr6:88316914-88316933 MsG0680034481.01.T01:intron 40.0%
ATGTTGTCAAAAAGCGGCTA+TGG + Chr6:88318009-88318028 MsG0680034481.01.T01:intron 40.0%
CAAAGGATCCGTTAACTTAC+AGG + Chr6:88317224-88317243 MsG0680034481.01.T01:CDS 40.0%
CAAATTATGGGCATCTTGAC+AGG + Chr6:88317984-88318003 MsG0680034481.01.T01:intron 40.0%
CAGGCAATGTTGTCAAAAAG+CGG + Chr6:88318003-88318022 MsG0680034481.01.T01:intron 40.0%
CGAAGTTACTGTTGAATAGG+TGG + Chr6:88321108-88321127 MsG0680034481.01.T01:intron 40.0%
CGCGTTGAATCTATTCTTCA+TGG + Chr6:88321246-88321265 MsG0680034481.01.T01:intron 40.0%
CTCAAGAACTCCAAGACTTT+GGG + Chr6:88322014-88322033 MsG0680034481.01.T01:CDS 40.0%
CTCTCTGATTCAAACAACTC+AGG + Chr6:88321290-88321309 MsG0680034481.01.T01:intron 40.0%
CTGAGTTGTTTGAATCAGAG+AGG - Chr6:88321292-88321311 None:intergenic 40.0%
GAGAGAGAGAGTTATACAGA+AGG - Chr6:88317009-88317028 None:intergenic 40.0%
GAGTGGTACCTGTAAGTTAA+CGG - Chr6:88317235-88317254 None:intergenic 40.0%
GATCTCGATCCTAACTTCAT+TGG - Chr6:88318366-88318385 None:intergenic 40.0%
GGAAAAACAGCAAGAAACAG+AGG + Chr6:88318578-88318597 MsG0680034481.01.T01:intron 40.0%
GGTTTCACTTAGACCATGTT+TGG - Chr6:88321041-88321060 None:intergenic 40.0%
GGTTTCTTCGTATGGATCAA+TGG + Chr6:88321064-88321083 MsG0680034481.01.T01:intron 40.0%
GTACCGAGAACAATAACAAC+TGG - Chr6:88316813-88316832 None:intergenic 40.0%
GTATTGCCAATCGAAGATCA+TGG - Chr6:88318154-88318173 None:intergenic 40.0%
GTCCAATCTTCCAGAAAGAT+CGG + Chr6:88319398-88319417 MsG0680034481.01.T01:CDS 40.0%
TAAAAGATGACCATCTCTGG+AGG - Chr6:88320536-88320555 None:intergenic 40.0%
TCATGAACGAGAAACATACC+CGG - Chr6:88321475-88321494 None:intergenic 40.0%
TCTCTGTCTAGTCCTCTTAA+TGG + Chr6:88321165-88321184 MsG0680034481.01.T01:intron 40.0%
TTAGGATCGAGATCCTACAT+AGG + Chr6:88318372-88318391 MsG0680034481.01.T01:intron 40.0%
TTGACTGTAGATATAGCTCG+CGG + Chr6:88320342-88320361 MsG0680034481.01.T01:intron 40.0%
TTGTTGGACAGGTCAAAAGA+CGG - Chr6:88321446-88321465 None:intergenic 40.0%
TTTCACAAAATTTAGCCGCC+TGG + Chr6:88320294-88320313 MsG0680034481.01.T01:intron 40.0%
TTTGTTGAGCAGATAGCAGA+CGG + Chr6:88321375-88321394 MsG0680034481.01.T01:intron 40.0%
! AAACCTCTGGTTTCTTCGTA+TGG + Chr6:88321056-88321075 MsG0680034481.01.T01:intron 40.0%
! AACCGATCTTTCTGGAAGAT+TGG - Chr6:88319403-88319422 None:intergenic 40.0%
! CTGTTGAATAGGTGGATTTC+GGG + Chr6:88321116-88321135 MsG0680034481.01.T01:intron 40.0%
!! AAGGGTGTTTGAATTTGGGT+TGG + Chr6:88317345-88317364 MsG0680034481.01.T01:intron 40.0%
!! ATGATTTTGAAGGTTCGTGG+TGG + Chr6:88317399-88317418 MsG0680034481.01.T01:intron 40.0%
!! GCAATTTAGATAGCTCTGAC+TGG - Chr6:88321981-88322000 None:intergenic 40.0%
!! GCTGTTTTCATAAGCTGTCT+TGG + Chr6:88317681-88317700 MsG0680034481.01.T01:intron 40.0%
!! TTGTTGACTCAAAGGGTGTT+TGG + Chr6:88321560-88321579 MsG0680034481.01.T01:intron 40.0%
!! TTTAGATAGCTCTGACTGGA+AGG - Chr6:88321977-88321996 None:intergenic 40.0%
AAGACCAATACCTCCAGAGA+TGG + Chr6:88320523-88320542 MsG0680034481.01.T01:intron 45.0%
ACAACTCAGGCAAGTGATGT+TGG + Chr6:88321303-88321322 MsG0680034481.01.T01:intron 45.0%
ACATACCCGGCAAAGATTGT+TGG - Chr6:88321462-88321481 None:intergenic 45.0%
ACCTGTCCAACAATCTTTGC+CGG + Chr6:88321453-88321472 MsG0680034481.01.T01:CDS 45.0%
AGAACTCCAAGACTTTGGGT+AGG + Chr6:88322018-88322037 MsG0680034481.01.T01:CDS 45.0%
AGAAGCTATCAATCACCAGG+CGG - Chr6:88320312-88320331 None:intergenic 45.0%
AGAAGGGCGATAGATACGAT+TGG - Chr6:88316992-88317011 None:intergenic 45.0%
CATGGTCTAAGTGAAACCTC+TGG + Chr6:88321043-88321062 MsG0680034481.01.T01:intron 45.0%
CATGTATACCAGTAGCCAGT+AGG - Chr6:88317822-88317841 None:intergenic 45.0%
CGGGGCAGTATTACATAGAT+AGG - Chr6:88321426-88321445 None:intergenic 45.0%
GAAGGGCGATAGATACGATT+GGG - Chr6:88316991-88317010 None:intergenic 45.0%
GATACACCTACCCAAAGTCT+TGG - Chr6:88322027-88322046 None:intergenic 45.0%
GATCCATACGAAGAAACCAG+AGG - Chr6:88321062-88321081 None:intergenic 45.0%
GCAAGAAACAGAGGAAACAG+AGG + Chr6:88318587-88318606 MsG0680034481.01.T01:intron 45.0%
GCTTTGTCTGATGCTTCCAA+TGG - Chr6:88316933-88316952 None:intergenic 45.0%
GGATACTAATATCTGCGCCA+TGG - Chr6:88319995-88320014 None:intergenic 45.0%
GGGGTTGTTGAGTCATTCTA+TGG + Chr6:88317429-88317448 MsG0680034481.01.T01:CDS 45.0%
GGGTATGTTTCTCGTTCATG+AGG + Chr6:88321474-88321493 MsG0680034481.01.T01:intron 45.0%
GTTGCTCACTTTCGAGAAAC+CGG - Chr6:88317887-88317906 None:intergenic 45.0%
TCTTACGATTCTACGTCCGA+TGG - Chr6:88318662-88318681 None:intergenic 45.0%
TGCTGTTGACACATTGGAGA+AGG - Chr6:88316785-88316804 None:intergenic 45.0%
TGGCGCAGATATTAGTATCC+AGG + Chr6:88319995-88320014 MsG0680034481.01.T01:CDS 45.0%
TGTTGGACAGGTCAAAAGAC+GGG - Chr6:88321445-88321464 None:intergenic 45.0%
TTGACACATTGGAGAAGGCT+GGG - Chr6:88316780-88316799 None:intergenic 45.0%
! AATAGGTGGATTTCGGGTGA+CGG + Chr6:88321122-88321141 MsG0680034481.01.T01:intron 45.0%
! ATGACCATCTCTGGAGGTAT+TGG - Chr6:88320530-88320549 None:intergenic 45.0%
! GAGTTTGAGGTGAACAGACA+TGG - Chr6:88316962-88316981 None:intergenic 45.0%
! GATGGTCACTTTAGAGAAGC+CGG + Chr6:88318873-88318892 MsG0680034481.01.T01:intron 45.0%
! TCTTCCAGAAAGATCGGTTC+GGG + Chr6:88319404-88319423 MsG0680034481.01.T01:CDS 45.0%
!! ATTGCACAAGAAAGCACCAC+CGG - Chr6:88320142-88320161 None:intergenic 45.0%
ATCCAGACAAACAGGCCTAC+TGG + Chr6:88317804-88317823 MsG0680034481.01.T01:intron 50.0%
ATGTAGTCAGGATCGAGTGC+TGG - Chr6:88318694-88318713 None:intergenic 50.0%
CCTACATAGGATTGATCGGC+CGG + Chr6:88318385-88318404 MsG0680034481.01.T01:intron 50.0%
CCTGTCCAACAATCTTTGCC+GGG + Chr6:88321454-88321473 MsG0680034481.01.T01:CDS 50.0%
GATTGGGACGAGAGAGTTTG+AGG - Chr6:88316975-88316994 None:intergenic 50.0%
GTTGACACATTGGAGAAGGC+TGG - Chr6:88316781-88316800 None:intergenic 50.0%
GTTGGACAGGTCAAAAGACG+GGG - Chr6:88321444-88321463 None:intergenic 50.0%
TGTACCCGAACCGATCTTTC+TGG - Chr6:88319411-88319430 None:intergenic 50.0%
! ATAGGTGGATTTCGGGTGAC+GGG + Chr6:88321123-88321142 MsG0680034481.01.T01:intron 50.0%
!! TTGCACAAGAAAGCACCACC+GGG - Chr6:88320141-88320160 None:intergenic 50.0%
ACCGGAGTGAAGTCGAAGCA+CGG + Chr6:88318628-88318647 MsG0680034481.01.T01:intron 55.0%
ACCGTGCTTCGACTTCACTC+CGG - Chr6:88318632-88318651 None:intergenic 55.0%
AGCCAGTAGGCCTGTTTGTC+TGG - Chr6:88317809-88317828 None:intergenic 55.0%
CCCGGCAAAGATTGTTGGAC+AGG - Chr6:88321457-88321476 None:intergenic 55.0%
CCGGCCGATCAATCCTATGT+AGG - Chr6:88318388-88318407 None:intergenic 55.0%
GTCATTGTGTGCGTGTGTGC+AGG - Chr6:88321534-88321553 None:intergenic 55.0%
GTGAAGTCGAAGCACGGTTG+AGG + Chr6:88318634-88318653 MsG0680034481.01.T01:intron 55.0%
TAACCACACGTGCTAGACCC+CGG + Chr6:88320120-88320139 MsG0680034481.01.T01:intron 55.0%
TAGGATTGATCGGCCGGTGA+AGG + Chr6:88318391-88318410 MsG0680034481.01.T01:intron 55.0%
! AAGCACGGTTGAGGTGCCAT+CGG + Chr6:88318643-88318662 MsG0680034481.01.T01:intron 55.0%
! CAAACAGGCCTACTGGCTAC+TGG + Chr6:88317811-88317830 MsG0680034481.01.T01:intron 55.0%
!! AAGGTTCGTGGTGGATCAGC+TGG + Chr6:88317408-88317427 MsG0680034481.01.T01:intron 55.0%
!! AGGTTCGTGGTGGATCAGCT+GGG + Chr6:88317409-88317428 MsG0680034481.01.T01:intron 55.0%
!! GATCGGTTCGGGTACAACAG+AGG + Chr6:88319415-88319434 MsG0680034481.01.T01:CDS 55.0%
!! TGCACAAGAAAGCACCACCG+GGG - Chr6:88320140-88320159 None:intergenic 55.0%
!! AGGATCGAGTGCTGGCTCGT+AGG - Chr6:88318686-88318705 None:intergenic 60.0%
!! GGTTCGTGGTGGATCAGCTG+GGG + Chr6:88317410-88317429 MsG0680034481.01.T01:intron 60.0%
CCACACGTGCTAGACCCCGG+TGG + Chr6:88320123-88320142 MsG0680034481.01.T01:intron 70.0%
CCACCGGGGTCTAGCACGTG+TGG - Chr6:88320126-88320145 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 88316769 88322074 88316769 ID=MsG0680034481.01;Name=MsG0680034481.01
Chr6 mRNA 88316769 88322074 88316769 ID=MsG0680034481.01.T01;Parent=MsG0680034481.01;Name=MsG0680034481.01.T01;_AED=0.48;_eAED=0.56;_QI=0|0.5|0.42|1|0|0|7|0|212
Chr6 exon 88316769 88316828 88316769 ID=MsG0680034481.01.T01:exon:18399;Parent=MsG0680034481.01.T01
Chr6 exon 88317153 88317245 88317153 ID=MsG0680034481.01.T01:exon:18400;Parent=MsG0680034481.01.T01
Chr6 exon 88317411 88317475 88317411 ID=MsG0680034481.01.T01:exon:18401;Parent=MsG0680034481.01.T01
Chr6 exon 88319382 88319490 88319382 ID=MsG0680034481.01.T01:exon:18402;Parent=MsG0680034481.01.T01
Chr6 exon 88319933 88320016 88319933 ID=MsG0680034481.01.T01:exon:18403;Parent=MsG0680034481.01.T01
Chr6 exon 88321387 88321475 88321387 ID=MsG0680034481.01.T01:exon:18404;Parent=MsG0680034481.01.T01
Chr6 exon 88321936 88322074 88321936 ID=MsG0680034481.01.T01:exon:18405;Parent=MsG0680034481.01.T01
Chr6 CDS 88316769 88316828 88316769 ID=MsG0680034481.01.T01:cds;Parent=MsG0680034481.01.T01
Chr6 CDS 88317153 88317245 88317153 ID=MsG0680034481.01.T01:cds;Parent=MsG0680034481.01.T01
Chr6 CDS 88317411 88317475 88317411 ID=MsG0680034481.01.T01:cds;Parent=MsG0680034481.01.T01
Chr6 CDS 88319382 88319490 88319382 ID=MsG0680034481.01.T01:cds;Parent=MsG0680034481.01.T01
Chr6 CDS 88319933 88320016 88319933 ID=MsG0680034481.01.T01:cds;Parent=MsG0680034481.01.T01
Chr6 CDS 88321387 88321475 88321387 ID=MsG0680034481.01.T01:cds;Parent=MsG0680034481.01.T01
Chr6 CDS 88321936 88322074 88321936 ID=MsG0680034481.01.T01:cds;Parent=MsG0680034481.01.T01
Gene Sequence

>MsG0680034481.01.T01

ATGTGTGTCCCAGCCTTCTCCAATGTGTCAACAGCAATTTTCCAGTTGTTATTGTTCTCGGAACTTCTAGAAGGAAAAATCATTGTAAAAACACAGTCTTCAATTTCACACTATGGAATTCGTCTTACTATCAAAGGATCCGTTAACTTACAGGTTCGTGGTGGATCAGCTGGGGTTGTTGAGTCATTCTATGGTGTTATTAAGCCAATCCCAATTGTGAAAAGGACAGTTGAGGTCCAATCTTCCAGAAAGATCGGTTCGGGTACAACAGAGGTAGTATATCAATTGAATGAATGCAATGCTGTCTACTTAAAGCAGTTTTATATGATACCATTTTCTTTGAATCTTAGACAAGACGAGAATTTAGAAAGATTTTATGAGACTTTCCATGGCGCAGATATTAGTATCCAGATAGCAGACGGAGATGTGTGCCGTAATTTGACTCTTCCTATCTATGTAATACTGCCCCGTCTTTTGACCTGTCCAACAATCTTTGCCGGTCCCTTTTCAATTGAGTTCAAAATTGCAATTGTTATAACCTTCCAGTCAGAGCTATCTAAATTGCAGAAAAAGTCTGACTCAAGAACTCCAAGACTTTGGGTAGGTGTATCTACATTTTATCCTCATTCTAATCACTGA
Protein sequence

>MsG0680034481.01.T01

MCVPAFSNVSTAIFQLLLFSELLEGKIIVKTQSSISHYGIRLTIKGSVNLQVRGGSAGVVESFYGVIKPIPIVKRTVEVQSSRKIGSGTTEVVYQLNECNAVYLKQFYMIPFSLNLRQDENLERFYETFHGADISIQIADGDVCRNLTLPIYVILPRLLTCPTIFAGPFSIEFKIAIVITFQSELSKLQKKSDSRTPRLWVGVSTFYPHSNH*