AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040705.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040705.01.T01 MTR_7g096280 97.656 128 3 0 1 128 1 128 3.46e-70 220
MsG0780040705.01.T01 MTR_1g070390 59.848 132 34 6 12 128 2 129 6.87e-33 122
MsG0780040705.01.T01 MTR_1g070435 58.333 132 36 5 12 128 2 129 4.29e-32 120
MsG0780040705.01.T01 MTR_1g070440 51.196 209 64 4 61 269 9 179 1.41e-27 107
MsG0780040705.01.T01 MTR_1g080700 64.706 68 24 0 61 128 22 89 5.91e-27 104
MsG0780040705.01.T01 MTR_5g021730 57.143 91 32 3 45 128 12 102 1.10e-21 90.1
MsG0780040705.01.T01 MTR_8g077160 53.191 94 24 7 12 90 2 90 3.46e-15 70.5
MsG0780040705.01.T01 MTR_8g018410 44.086 93 48 3 63 152 120 211 1.45e-12 67.4
MsG0780040705.01.T01 MTR_2g099610 37.662 77 45 2 60 134 137 212 5.00e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040705.01.T01 AT2G30620 65.882 85 29 0 57 141 57 141 6.46e-34 123
MsG0780040705.01.T01 AT2G30620 48.249 257 89 7 57 312 57 270 5.09e-33 123
MsG0780040705.01.T01 AT2G18050 57.471 87 33 2 43 128 8 91 1.23e-21 90.1
MsG0780040705.01.T01 AT2G18050 61.290 62 23 1 68 128 1 62 1.15e-16 75.9

Find 134 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTGGAAGCGGGCTTTC+GGG 0.152994 7:-81429766 None:intergenic
ATTTCAATTTAAAAGTTTAA+TGG 0.188892 7:-81430811 None:intergenic
ATCAAGAAGCTCGTTGCTTC+TGG 0.208493 7:+81430061 MsG0780040705.01.T01:CDS
AGCCTTGGCAGGAGCAGCTT+TGG 0.230291 7:-81430263 None:intergenic
CTTTGTTATGCGGTGTAGTT+TGG 0.247957 7:+81430744 MsG0780040705.01.T01:three_prime_UTR
CAAGGAAGGCTCCAACAAAA+AGG 0.248493 7:+81430647 MsG0780040705.01.T01:CDS
GAAGCGGGCTTTCGGGGTTT+TGG 0.250284 7:-81429759 None:intergenic
TTCGCCTTGGGCTTCGCAGC+AGG 0.258404 7:-81430361 None:intergenic
GGTTCTTGGAAGCGGGCTTT+CGG 0.259296 7:-81429767 None:intergenic
GCAGGCTTTGCCTTGGCGGC+AGG 0.260442 7:-81430307 None:intergenic
TTTCGCCTTGGGCTTGGGCT+TGG 0.261568 7:-81430164 None:intergenic
TGAAAACGAGAAAGAGAAAA+TGG 0.275926 7:-81429575 None:intergenic
GCGGCAGCGGGCTTCTTAGC+TGG 0.280360 7:-81430136 None:intergenic
TTCGCCTTGGGCTTGGGCTT+GGG 0.281616 7:-81430163 None:intergenic
TTTGTTGGAGCCTTCCTTGC+TGG 0.288920 7:-81430643 None:intergenic
GCAGGCTTCGCCTTTGCAGC+TGG 0.291738 7:-81430343 None:intergenic
GCTGGCTTAGCCTTGGCAGC+AGG 0.294649 7:-81430325 None:intergenic
AGAGAAAATGGATATGATTA+TGG 0.304238 7:-81429563 None:intergenic
AGGTGCTTTCGCCTTGGGCT+TGG 0.306172 7:-81430170 None:intergenic
GGTGCTTTCGCCTTGGGCTT+GGG 0.326221 7:-81430169 None:intergenic
GAACTTCAAGAAGATTCTTC+TGG 0.329050 7:+81430033 MsG0780040705.01.T01:CDS
CTTGGCAGCAGGCTTTGCCT+TGG 0.330224 7:-81430314 None:intergenic
CTTTGCAGCTGGCTTAGCCT+TGG 0.335758 7:-81430332 None:intergenic
GCGGGTTTCGCCTTGGCAGC+TGG 0.337646 7:-81430451 None:intergenic
GCCTTAGCAGGCCTCGCAGC+TGG 0.341185 7:-81430487 None:intergenic
GGCTACAGGTGCTTTCGCCT+TGG 0.344001 7:-81430176 None:intergenic
GCTACAGGTGCTTTCGCCTT+GGG 0.358145 7:-81430175 None:intergenic
TTGGCCTGAGCCTTGGCTAC+AGG 0.370054 7:-81430190 None:intergenic
AGGGTGAGTGCGAGGGTTCT+TGG 0.371985 7:-81429781 None:intergenic
GCAACAGGAGCCTTCGCCTT+GGG 0.381616 7:-81430373 None:intergenic
GGCAGCAGGCTTTGCCTTGG+CGG 0.382016 7:-81430311 None:intergenic
TGGAGCCTTGGCCTGAGCCT+TGG 0.388550 7:-81430197 None:intergenic
GCTTTGGCCTTAGCCTTAGC+AGG 0.399563 7:-81430247 None:intergenic
CAATTTCAATTTCAACCCTA+TGG 0.400260 7:+81429596 MsG0780040705.01.T01:exon
GCTGGCTTCGCCTTCACAGC+GGG 0.401014 7:-81430469 None:intergenic
GGCTCCAGCTGCTAAGTCTA+AGG 0.402522 7:+81430213 MsG0780040705.01.T01:CDS
GCTGGTGCAGCCTTCTTCAC+TGG 0.405093 7:-81430625 None:intergenic
GCAGGCTTAGCCTTAGCAGC+TGG 0.405094 7:-81430289 None:intergenic
GTTGGATTATACCTCTTCAT+AGG 0.406087 7:-81429805 None:intergenic
GCTGGCTTAGCCTTAGCCGC+GGG 0.407544 7:-81430433 None:intergenic
CAAGGCAAAGCCTGCTGCCA+AGG 0.412841 7:+81430315 MsG0780040705.01.T01:CDS
TTTGTTATGCGGTGTAGTTT+GGG 0.414444 7:+81430745 MsG0780040705.01.T01:three_prime_UTR
TGAACTTTGCCAAAGCATAC+TGG 0.416902 7:-81429982 None:intergenic
ATCATAAATGAAAAGCTAGA+AGG 0.420441 7:+81430866 MsG0780040705.01.T01:three_prime_UTR
GCCGGTGCAGCCTTCTTCAC+TGG 0.420909 7:-81430586 None:intergenic
TCAAGAAGCTCGTTGCTTCT+GGG 0.421137 7:+81430062 MsG0780040705.01.T01:CDS
TGCTTCTGGGAAGCTTGTTA+AGG 0.422591 7:+81430075 MsG0780040705.01.T01:CDS
ACAGCATTGGCCTTAGCAAC+AGG 0.429638 7:-81430388 None:intergenic
GGAAGAGGGTCGACGGCGGC+CGG 0.429971 7:-81429675 None:intergenic
CTTAGCAGCTGGCTTAGCCT+TGG 0.434577 7:-81430278 None:intergenic
GAAGGCTGCACCGGCGAAGA+AGG 0.439472 7:+81430594 MsG0780040705.01.T01:CDS
GCAGCTGGCTTAGCCTTGGC+AGG 0.439834 7:-81430274 None:intergenic
AGAATCTTCTTGAAGTTCGC+TGG 0.441711 7:-81430028 None:intergenic
GCCGCAGCAGCTCTCTTCCC+AGG 0.443735 7:-81430535 None:intergenic
GCCAGCTGCGAGGCCTGCTA+AGG 0.453992 7:+81430486 MsG0780040705.01.T01:CDS
GTAGCAGCTTTCTTCACAGC+TGG 0.458621 7:-81430562 None:intergenic
GGCTTTGCCTTAGCAGCTAC+AGG 0.458880 7:-81430412 None:intergenic
TTCGCCTTAGACTTAGCAGC+TGG 0.461234 7:-81430217 None:intergenic
TTGCTCGACGGCGGAGACGG+TGG 0.463485 7:-81429637 None:intergenic
AGACTTAGCAGCTGGAGCCT+TGG 0.464716 7:-81430209 None:intergenic
CGGTTCAAGCCAGTATGCTT+TGG 0.465800 7:+81429973 MsG0780040705.01.T01:CDS
GGGTAGGAAGTGAAAAGGGG+AGG 0.467156 7:+81430672 MsG0780040705.01.T01:exon
GAAGTTCTTGAAGCCTTAGC+AGG 0.468954 7:-81430499 None:intergenic
ACAGATGTTTCAAAAGAAGA+AGG 0.471257 7:+81430774 MsG0780040705.01.T01:three_prime_UTR
GCTGGAGCAGCAGACTTAGC+TGG 0.472122 7:-81430118 None:intergenic
TAAGGCTAAGCCAGCTGCCA+AGG 0.472493 7:+81430441 MsG0780040705.01.T01:CDS
GGGTTGCTCGACGGCGGAGA+CGG 0.472845 7:-81429640 None:intergenic
AGCAACAGGAGCCTTCGCCT+TGG 0.474423 7:-81430374 None:intergenic
CAAGGCTAAGCCAGCTGCAA+AGG 0.476286 7:+81430333 MsG0780040705.01.T01:CDS
AGTGCGAGGGTTCTTGGAAG+CGG 0.476294 7:-81429775 None:intergenic
TGCTGCGAAGCCCAAGGCGA+AGG 0.477731 7:+81430363 MsG0780040705.01.T01:CDS
GGCGTAGCAGCCTTCTTCGC+CGG 0.478854 7:-81430604 None:intergenic
CTTCACAGCGGGTTTCGCCT+TGG 0.479275 7:-81430458 None:intergenic
TGCTCGACGGCGGAGACGGT+GGG 0.483411 7:-81429636 None:intergenic
AGCTGCTACGCCAGTGAAGA+AGG 0.484447 7:+81430576 MsG0780040705.01.T01:CDS
GGCTGCTACGCCAGTGAAGA+AGG 0.484447 7:+81430615 MsG0780040705.01.T01:CDS
CAAGGCTAAGCCAGCTGCTA+AGG 0.487877 7:+81430279 MsG0780040705.01.T01:CDS
TGCTGTACCTGTAGCTGCTA+AGG 0.495059 7:+81430405 MsG0780040705.01.T01:CDS
AGCACCTGTAGCCAAGGCTC+AGG 0.495242 7:+81430186 MsG0780040705.01.T01:CDS
GTGCGAGGGTTCTTGGAAGC+GGG 0.496962 7:-81429774 None:intergenic
GCGGCCGGCTCCTCCACAAT+GGG 0.497053 7:-81429660 None:intergenic
TAAGGCAAAGCCCGCGGCTA+AGG 0.500278 7:+81430423 MsG0780040705.01.T01:CDS
GATTATACCTCTTCATAGGT+AGG 0.501241 7:-81429801 None:intergenic
GGCGAAGGCTCCTGTTGCTA+AGG 0.503889 7:+81430378 MsG0780040705.01.T01:CDS
GCAACCCATTGTGGAGGAGC+CGG 0.506752 7:+81429656 MsG0780040705.01.T01:CDS
GGCGGCCGGCTCCTCCACAA+TGG 0.507570 7:-81429661 None:intergenic
AGCTGGCTTAGCCTTAGCCG+CGG 0.509277 7:-81430434 None:intergenic
AAAACCCAAGCCCAAGCCCA+AGG 0.512143 7:+81430159 MsG0780040705.01.T01:CDS
AGCTGCTCCTGCTAAGGCTA+AGG 0.513069 7:+81430240 MsG0780040705.01.T01:CDS
GTAGGAAGTGAAAAGGGGAG+GGG 0.517233 7:+81430674 MsG0780040705.01.T01:exon
CAAGGCGAAACCCGCTGTGA+AGG 0.517689 7:+81430459 MsG0780040705.01.T01:CDS
CTTGGCGGCAGTGGGCTCGT+CGG 0.518772 7:-81429715 None:intergenic
TTCTTGGAAGCGGGCTTTCG+GGG 0.519746 7:-81429765 None:intergenic
GGACGCGATTGTGACTTTGA+AGG 0.521125 7:+81429943 MsG0780040705.01.T01:CDS
TCATTGACGACAGGTGGAAG+AGG 0.523503 7:-81429690 None:intergenic
GAAGGCTGCACCAGCAAGGA+AGG 0.525244 7:+81430633 MsG0780040705.01.T01:CDS
GCCAGTGAAGAAGGCTGCAC+CGG 0.525579 7:+81430585 MsG0780040705.01.T01:CDS
TAAGGCTAAGCCTGCCGCCA+AGG 0.529628 7:+81430297 MsG0780040705.01.T01:CDS
TGGGAAGCTTGTTAAGGTCA+AGG 0.534548 7:+81430081 MsG0780040705.01.T01:CDS
TGTAGCCAAGGCTCAGGCCA+AGG 0.535590 7:+81430192 MsG0780040705.01.T01:CDS
GAAGCCTGCTGCGAAGCCCA+AGG 0.535967 7:+81430357 MsG0780040705.01.T01:CDS
CGCCGTCGAGCAACCCATTG+TGG 0.536582 7:+81429647 MsG0780040705.01.T01:CDS
TCTTCAACAGAGGAAGCCAT+AGG 0.538140 7:-81429612 None:intergenic
GACGGTGGGTTCTTCAACAG+AGG 0.542415 7:-81429622 None:intergenic
GGCGAAAGCTGCTCCTGCTA+AGG 0.548061 7:+81430234 MsG0780040705.01.T01:CDS
GGGAAGCTTGTTAAGGTCAA+GGG 0.548796 7:+81430082 MsG0780040705.01.T01:CDS
GGTAGGAAGTGAAAAGGGGA+GGG 0.558354 7:+81430673 MsG0780040705.01.T01:exon
GGCCAAAGCTGCTCCTGCCA+AGG 0.561780 7:+81430261 MsG0780040705.01.T01:CDS
TCATAGGTAGGGTGAGTGCG+AGG 0.561820 7:-81429789 None:intergenic
ATTATACCTCTTCATAGGTA+GGG 0.564781 7:-81429800 None:intergenic
AAATACAAAGCTAGAAAACC+TGG 0.565678 7:-81430837 None:intergenic
GGCGAAAGCACCTGTAGCCA+AGG 0.572063 7:+81430180 MsG0780040705.01.T01:CDS
AGAAAAGCTAGTGTTTGTAG+TGG 0.575872 7:+81430702 MsG0780040705.01.T01:three_prime_UTR
CACTCACCCTACCTATGAAG+AGG 0.581938 7:+81429794 MsG0780040705.01.T01:CDS
GACAGGTGGAAGAGGGTCGA+CGG 0.585350 7:-81429682 None:intergenic
CTCCACAATGGGTTGCTCGA+CGG 0.587768 7:-81429649 None:intergenic
TCGTCGGATTCATTGACGAC+AGG 0.595029 7:-81429699 None:intergenic
CTTCAACAGAGGAAGCCATA+GGG 0.598940 7:-81429611 None:intergenic
GTGACTTTGAAGGAGAAGAA+CGG 0.599741 7:+81429953 MsG0780040705.01.T01:CDS
TCGGATTCATTGACGACAGG+TGG 0.600220 7:-81429696 None:intergenic
CACAATGGGTTGCTCGACGG+CGG 0.600492 7:-81429646 None:intergenic
ACTTCGACAAGGACATCACC+TGG 0.600910 7:+81430517 MsG0780040705.01.T01:CDS
CATAGGTAGGGTGAGTGCGA+GGG 0.601423 7:-81429788 None:intergenic
ACCTGGGAAGAGAGCTGCTG+CGG 0.603536 7:+81430534 MsG0780040705.01.T01:CDS
AGCAGCTACAGGTACAGCAT+TGG 0.604180 7:-81430401 None:intergenic
TGAAGAAGGCTGCACCAGCA+AGG 0.617052 7:+81430629 MsG0780040705.01.T01:CDS
AGCTGCTAAGGCAAAGCCCG+CGG 0.620978 7:+81430417 MsG0780040705.01.T01:CDS
CATTGACGACAGGTGGAAGA+GGG 0.625716 7:-81429689 None:intergenic
TGAAGGCGAAGCCAGCTGCG+AGG 0.633012 7:+81430476 MsG0780040705.01.T01:CDS
CGTCGAGCAACCCATTGTGG+AGG 0.646163 7:+81429650 MsG0780040705.01.T01:CDS
AGCTGGCTTCGCCTTCACAG+CGG 0.651707 7:-81430470 None:intergenic
AGGTGGAAGAGGGTCGACGG+CGG 0.677080 7:-81429679 None:intergenic
CTTCGACAAGGACATCACCT+GGG 0.693700 7:+81430518 MsG0780040705.01.T01:CDS
AGGCTTCAAGAACTTCGACA+AGG 0.719954 7:+81430506 MsG0780040705.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCAATTTAAAAGTTTAA+TGG - Chr7:81430814-81430833 None:intergenic 10.0%
!!! GTAAATTTTTCTTTGTTATG+CGG + Chr7:81430734-81430753 MsG0780040705.01.T01:three_prime_UTR 20.0%
!!! TTTTTATTTTTTGTTGCAGA+TGG + Chr7:81429916-81429935 MsG0780040705.01.T01:intron 20.0%
! AGAGAAAATGGATATGATTA+TGG - Chr7:81429566-81429585 None:intergenic 25.0%
! ATCATAAATGAAAAGCTAGA+AGG + Chr7:81430866-81430885 MsG0780040705.01.T01:three_prime_UTR 25.0%
!! CTTTTAAATTGAAATTGTCC+AGG + Chr7:81430819-81430838 MsG0780040705.01.T01:three_prime_UTR 25.0%
AAATACAAAGCTAGAAAACC+TGG - Chr7:81430840-81430859 None:intergenic 30.0%
ACAGATGTTTCAAAAGAAGA+AGG + Chr7:81430774-81430793 MsG0780040705.01.T01:three_prime_UTR 30.0%
ATTATACCTCTTCATAGGTA+GGG - Chr7:81429803-81429822 None:intergenic 30.0%
CAATTTCAATTTCAACCCTA+TGG + Chr7:81429596-81429615 MsG0780040705.01.T01:exon 30.0%
TGAAAACGAGAAAGAGAAAA+TGG - Chr7:81429578-81429597 None:intergenic 30.0%
AGAAAAGCTAGTGTTTGTAG+TGG + Chr7:81430702-81430721 MsG0780040705.01.T01:three_prime_UTR 35.0%
GAACTTCAAGAAGATTCTTC+TGG + Chr7:81430033-81430052 MsG0780040705.01.T01:CDS 35.0%
GATTATACCTCTTCATAGGT+AGG - Chr7:81429804-81429823 None:intergenic 35.0%
GTTGGATTATACCTCTTCAT+AGG - Chr7:81429808-81429827 None:intergenic 35.0%
! CGAAGATTGAGCGAAATTTT+TGG - Chr7:81429538-81429557 None:intergenic 35.0%
! TTTGTTATGCGGTGTAGTTT+GGG + Chr7:81430745-81430764 MsG0780040705.01.T01:three_prime_UTR 35.0%
!! GTAATTGTGTTGAGTTGAGT+TGG - Chr7:81429826-81429845 None:intergenic 35.0%
!!! TTTTTTGTTGCAGATGGTGA+CGG + Chr7:81429922-81429941 MsG0780040705.01.T01:intron 35.0%
AAGGAAGGCTCCAACAAAAA+GGG + Chr7:81430648-81430667 MsG0780040705.01.T01:CDS 40.0%
AGAATCTTCTTGAAGTTCGC+TGG - Chr7:81430031-81430050 None:intergenic 40.0%
TGAACTTTGCCAAAGCATAC+TGG - Chr7:81429985-81430004 None:intergenic 40.0%
! CTTTGTTATGCGGTGTAGTT+TGG + Chr7:81430744-81430763 MsG0780040705.01.T01:three_prime_UTR 40.0%
! GTGACTTTGAAGGAGAAGAA+CGG + Chr7:81429953-81429972 MsG0780040705.01.T01:CDS 40.0%
AGGAAGGCTCCAACAAAAAG+GGG + Chr7:81430649-81430668 MsG0780040705.01.T01:CDS 45.0%
AGGCTTCAAGAACTTCGACA+AGG + Chr7:81430506-81430525 MsG0780040705.01.T01:CDS 45.0%
ATCAAGAAGCTCGTTGCTTC+TGG + Chr7:81430061-81430080 MsG0780040705.01.T01:CDS 45.0%
CAAGGAAGGCTCCAACAAAA+AGG + Chr7:81430647-81430666 MsG0780040705.01.T01:CDS 45.0%
CTTCAACAGAGGAAGCCATA+GGG - Chr7:81429614-81429633 None:intergenic 45.0%
GAAGTTCTTGAAGCCTTAGC+AGG - Chr7:81430502-81430521 None:intergenic 45.0%
TCAAGAAGCTCGTTGCTTCT+GGG + Chr7:81430062-81430081 MsG0780040705.01.T01:CDS 45.0%
TCTTCAACAGAGGAAGCCAT+AGG - Chr7:81429615-81429634 None:intergenic 45.0%
!! GGGAAGCTTGTTAAGGTCAA+GGG + Chr7:81430082-81430101 MsG0780040705.01.T01:CDS 45.0%
!! TGCTTCTGGGAAGCTTGTTA+AGG + Chr7:81430075-81430094 MsG0780040705.01.T01:CDS 45.0%
!! TGGGAAGCTTGTTAAGGTCA+AGG + Chr7:81430081-81430100 MsG0780040705.01.T01:CDS 45.0%
!!! TTTCGGGGTTTTGGCTCTTT+GGG - Chr7:81429753-81429772 None:intergenic 45.0%
AAGGCTCCAACAAAAAGGGG+GGG + Chr7:81430652-81430671 MsG0780040705.01.T01:CDS 50.0%
ACTTCGACAAGGACATCACC+TGG + Chr7:81430517-81430536 MsG0780040705.01.T01:CDS 50.0%
AGCAGCTACAGGTACAGCAT+TGG - Chr7:81430404-81430423 None:intergenic 50.0%
CACTCACCCTACCTATGAAG+AGG + Chr7:81429794-81429813 MsG0780040705.01.T01:CDS 50.0%
CATTGACGACAGGTGGAAGA+GGG - Chr7:81429692-81429711 None:intergenic 50.0%
CGGTTCAAGCCAGTATGCTT+TGG + Chr7:81429973-81429992 MsG0780040705.01.T01:CDS 50.0%
CTTCGACAAGGACATCACCT+GGG + Chr7:81430518-81430537 MsG0780040705.01.T01:CDS 50.0%
GAAGGCTCCAACAAAAAGGG+GGG + Chr7:81430651-81430670 MsG0780040705.01.T01:CDS 50.0%
GGAAGGCTCCAACAAAAAGG+GGG + Chr7:81430650-81430669 MsG0780040705.01.T01:CDS 50.0%
GGACGCGATTGTGACTTTGA+AGG + Chr7:81429943-81429962 MsG0780040705.01.T01:CDS 50.0%
GGTAGGAAGTGAAAAGGGGA+GGG + Chr7:81430673-81430692 MsG0780040705.01.T01:exon 50.0%
GTAGCAGCTTTCTTCACAGC+TGG - Chr7:81430565-81430584 None:intergenic 50.0%
GTAGGAAGTGAAAAGGGGAG+GGG + Chr7:81430674-81430693 MsG0780040705.01.T01:exon 50.0%
TCATTGACGACAGGTGGAAG+AGG - Chr7:81429693-81429712 None:intergenic 50.0%
TCGGATTCATTGACGACAGG+TGG - Chr7:81429699-81429718 None:intergenic 50.0%
TCGTCGGATTCATTGACGAC+AGG - Chr7:81429702-81429721 None:intergenic 50.0%
TGCTGTACCTGTAGCTGCTA+AGG + Chr7:81430405-81430424 MsG0780040705.01.T01:CDS 50.0%
TTCGCCTTAGACTTAGCAGC+TGG - Chr7:81430220-81430239 None:intergenic 50.0%
TTTGTTGGAGCCTTCCTTGC+TGG - Chr7:81430646-81430665 None:intergenic 50.0%
! TTCCTACCCCCCCTTTTTGT+TGG - Chr7:81430661-81430680 None:intergenic 50.0%
!! ACAGCATTGGCCTTAGCAAC+AGG - Chr7:81430391-81430410 None:intergenic 50.0%
!!! CTTTCGGGGTTTTGGCTCTT+TGG - Chr7:81429754-81429773 None:intergenic 50.0%
!!! GGCTCTTTGGGGGCTTTTTT+GGG - Chr7:81429741-81429760 None:intergenic 50.0%
!!! TGGCTCTTTGGGGGCTTTTT+TGG - Chr7:81429742-81429761 None:intergenic 50.0%
!!! TTCGGGGTTTTGGCTCTTTG+GGG - Chr7:81429752-81429771 None:intergenic 50.0%
!!! TTTGGGGGCTTTTTTGGGCT+TGG - Chr7:81429736-81429755 None:intergenic 50.0%
AAAACCCAAGCCCAAGCCCA+AGG + Chr7:81430159-81430178 MsG0780040705.01.T01:CDS 55.0%
AGACTTAGCAGCTGGAGCCT+TGG - Chr7:81430212-81430231 None:intergenic 55.0%
AGCTGCTACGCCAGTGAAGA+AGG + Chr7:81430576-81430595 MsG0780040705.01.T01:CDS 55.0%
AGCTGCTCCTGCTAAGGCTA+AGG + Chr7:81430240-81430259 MsG0780040705.01.T01:CDS 55.0%
AGGGGGGGTAGGAAGTGAAA+AGG + Chr7:81430667-81430686 MsG0780040705.01.T01:exon 55.0%
AGTGCGAGGGTTCTTGGAAG+CGG - Chr7:81429778-81429797 None:intergenic 55.0%
CAAGGCTAAGCCAGCTGCAA+AGG + Chr7:81430333-81430352 MsG0780040705.01.T01:CDS 55.0%
CAAGGCTAAGCCAGCTGCTA+AGG + Chr7:81430279-81430298 MsG0780040705.01.T01:CDS 55.0%
CATAGGTAGGGTGAGTGCGA+GGG - Chr7:81429791-81429810 None:intergenic 55.0%
CTCCAACAAAAAGGGGGGGT+AGG + Chr7:81430656-81430675 MsG0780040705.01.T01:CDS 55.0%
GCTACAGGTGCTTTCGCCTT+GGG - Chr7:81430178-81430197 None:intergenic 55.0%
GGCTCCAGCTGCTAAGTCTA+AGG + Chr7:81430213-81430232 MsG0780040705.01.T01:CDS 55.0%
GGCTTTGCCTTAGCAGCTAC+AGG - Chr7:81430415-81430434 None:intergenic 55.0%
GGGGGGGTAGGAAGTGAAAA+GGG + Chr7:81430668-81430687 MsG0780040705.01.T01:exon 55.0%
GGGGGGTAGGAAGTGAAAAG+GGG + Chr7:81430669-81430688 MsG0780040705.01.T01:exon 55.0%
GGGTAGGAAGTGAAAAGGGG+AGG + Chr7:81430672-81430691 MsG0780040705.01.T01:exon 55.0%
TAAGGCTAAGCCAGCTGCCA+AGG + Chr7:81430441-81430460 MsG0780040705.01.T01:CDS 55.0%
TCATAGGTAGGGTGAGTGCG+AGG - Chr7:81429792-81429811 None:intergenic 55.0%
TGAAGAAGGCTGCACCAGCA+AGG + Chr7:81430629-81430648 MsG0780040705.01.T01:CDS 55.0%
! CTTAGCAGCTGGCTTAGCCT+TGG - Chr7:81430281-81430300 None:intergenic 55.0%
! CTTTGCAGCTGGCTTAGCCT+TGG - Chr7:81430335-81430354 None:intergenic 55.0%
! GACGGTGGGTTCTTCAACAG+AGG - Chr7:81429625-81429644 None:intergenic 55.0%
! GGTTCTTGGAAGCGGGCTTT+CGG - Chr7:81429770-81429789 None:intergenic 55.0%
! GTTCTTGGAAGCGGGCTTTC+GGG - Chr7:81429769-81429788 None:intergenic 55.0%
! TTCTTGGAAGCGGGCTTTCG+GGG - Chr7:81429768-81429787 None:intergenic 55.0%
!! CTCCACAATGGGTTGCTCGA+CGG - Chr7:81429652-81429671 None:intergenic 55.0%
!! GCTTTGGCCTTAGCCTTAGC+AGG - Chr7:81430250-81430269 None:intergenic 55.0%
!! TTTTTGGGCTTGGCGGCAGT+GGG - Chr7:81429726-81429745 None:intergenic 55.0%
!!! TCGGGGTTTTGGCTCTTTGG+GGG - Chr7:81429751-81429770 None:intergenic 55.0%
!!! TTTTTTGGGCTTGGCGGCAG+TGG - Chr7:81429727-81429746 None:intergenic 55.0%
ACCTGGGAAGAGAGCTGCTG+CGG + Chr7:81430534-81430553 MsG0780040705.01.T01:CDS 60.0%
AGCAACAGGAGCCTTCGCCT+TGG - Chr7:81430377-81430396 None:intergenic 60.0%
AGCACCTGTAGCCAAGGCTC+AGG + Chr7:81430186-81430205 MsG0780040705.01.T01:CDS 60.0%
AGCCTTGGCAGGAGCAGCTT+TGG - Chr7:81430266-81430285 None:intergenic 60.0%
AGCTGCTAAGGCAAAGCCCG+CGG + Chr7:81430417-81430436 MsG0780040705.01.T01:CDS 60.0%
AGGGTGAGTGCGAGGGTTCT+TGG - Chr7:81429784-81429803 None:intergenic 60.0%
AGGTGCTTTCGCCTTGGGCT+TGG - Chr7:81430173-81430192 None:intergenic 60.0%
CAAGGCAAAGCCTGCTGCCA+AGG + Chr7:81430315-81430334 MsG0780040705.01.T01:CDS 60.0%
CAAGGCGAAACCCGCTGTGA+AGG + Chr7:81430459-81430478 MsG0780040705.01.T01:CDS 60.0%
CGTCGAGCAACCCATTGTGG+AGG + Chr7:81429650-81429669 MsG0780040705.01.T01:CDS 60.0%
CTTGGCAGCAGGCTTTGCCT+TGG - Chr7:81430317-81430336 None:intergenic 60.0%
GAAGGCTGCACCAGCAAGGA+AGG + Chr7:81430633-81430652 MsG0780040705.01.T01:CDS 60.0%
GACAGGTGGAAGAGGGTCGA+CGG - Chr7:81429685-81429704 None:intergenic 60.0%
GCAACAGGAGCCTTCGCCTT+GGG - Chr7:81430376-81430395 None:intergenic 60.0%
GCAACCCATTGTGGAGGAGC+CGG + Chr7:81429656-81429675 MsG0780040705.01.T01:CDS 60.0%
GCCAGTGAAGAAGGCTGCAC+CGG + Chr7:81430585-81430604 MsG0780040705.01.T01:CDS 60.0%
GCTGGAGCAGCAGACTTAGC+TGG - Chr7:81430121-81430140 None:intergenic 60.0%
GCTGGTGCAGCCTTCTTCAC+TGG - Chr7:81430628-81430647 None:intergenic 60.0%
GGCGAAAGCTGCTCCTGCTA+AGG + Chr7:81430234-81430253 MsG0780040705.01.T01:CDS 60.0%
GGCGAAGGCTCCTGTTGCTA+AGG + Chr7:81430378-81430397 MsG0780040705.01.T01:CDS 60.0%
GGCTACAGGTGCTTTCGCCT+TGG - Chr7:81430179-81430198 None:intergenic 60.0%
GGCTGCTACGCCAGTGAAGA+AGG + Chr7:81430615-81430634 MsG0780040705.01.T01:CDS 60.0%
GGTGCTTTCGCCTTGGGCTT+GGG - Chr7:81430172-81430191 None:intergenic 60.0%
GTGCGAGGGTTCTTGGAAGC+GGG - Chr7:81429777-81429796 None:intergenic 60.0%
TAAGGCAAAGCCCGCGGCTA+AGG + Chr7:81430423-81430442 MsG0780040705.01.T01:CDS 60.0%
TAAGGCTAAGCCTGCCGCCA+AGG + Chr7:81430297-81430316 MsG0780040705.01.T01:CDS 60.0%
TGTAGCCAAGGCTCAGGCCA+AGG + Chr7:81430192-81430211 MsG0780040705.01.T01:CDS 60.0%
TTCGCCTTGGGCTTGGGCTT+GGG - Chr7:81430166-81430185 None:intergenic 60.0%
TTGGCCTGAGCCTTGGCTAC+AGG - Chr7:81430193-81430212 None:intergenic 60.0%
TTTCGCCTTGGGCTTGGGCT+TGG - Chr7:81430167-81430186 None:intergenic 60.0%
! AGCTGGCTTCGCCTTCACAG+CGG - Chr7:81430473-81430492 None:intergenic 60.0%
! CTTCACAGCGGGTTTCGCCT+TGG - Chr7:81430461-81430480 None:intergenic 60.0%
! GGGCTTGGGCTTGGGTTTTG+CGG - Chr7:81430158-81430177 None:intergenic 60.0%
!! AGCTGGCTTAGCCTTAGCCG+CGG - Chr7:81430437-81430456 None:intergenic 60.0%
!! CACAATGGGTTGCTCGACGG+CGG - Chr7:81429649-81429668 None:intergenic 60.0%
!! GAAGCGGGCTTTCGGGGTTT+TGG - Chr7:81429762-81429781 None:intergenic 60.0%
!! GCAGGCTTAGCCTTAGCAGC+TGG - Chr7:81430292-81430311 None:intergenic 60.0%
!! GGCGAAAGCACCTGTAGCCA+AGG + Chr7:81430180-81430199 MsG0780040705.01.T01:CDS 60.0%
!!! GGGGGCTTTTTTGGGCTTGG+CGG - Chr7:81429733-81429752 None:intergenic 60.0%
AGGTGGAAGAGGGTCGACGG+CGG - Chr7:81429682-81429701 None:intergenic 65.0%
CGCCGTCGAGCAACCCATTG+TGG + Chr7:81429647-81429666 MsG0780040705.01.T01:CDS 65.0%
GAAGCCTGCTGCGAAGCCCA+AGG + Chr7:81430357-81430376 MsG0780040705.01.T01:CDS 65.0%
GCAGGCTTCGCCTTTGCAGC+TGG - Chr7:81430346-81430365 None:intergenic 65.0%
GCCGGTGCAGCCTTCTTCAC+TGG - Chr7:81430589-81430608 None:intergenic 65.0%
GGCAGCAGGCTTTGCCTTGG+CGG - Chr7:81430314-81430333 None:intergenic 65.0%
GGCCAAAGCTGCTCCTGCCA+AGG + Chr7:81430261-81430280 MsG0780040705.01.T01:CDS 65.0%
GGCGTAGCAGCCTTCTTCGC+CGG - Chr7:81430607-81430626 None:intergenic 65.0%
TGAAGGCGAAGCCAGCTGCG+AGG + Chr7:81430476-81430495 MsG0780040705.01.T01:CDS 65.0%
TGCTGCGAAGCCCAAGGCGA+AGG + Chr7:81430363-81430382 MsG0780040705.01.T01:CDS 65.0%
TGGAGCCTTGGCCTGAGCCT+TGG - Chr7:81430200-81430219 None:intergenic 65.0%
TTCGCCTTGGGCTTCGCAGC+AGG - Chr7:81430364-81430383 None:intergenic 65.0%
! GAAGGCTGCACCGGCGAAGA+AGG + Chr7:81430594-81430613 MsG0780040705.01.T01:CDS 65.0%
! GCTGGCTTCGCCTTCACAGC+GGG - Chr7:81430472-81430491 None:intergenic 65.0%
! GGCTTGGGTTTTGCGGCAGC+GGG - Chr7:81430151-81430170 None:intergenic 65.0%
! GGGCTTGGGTTTTGCGGCAG+CGG - Chr7:81430152-81430171 None:intergenic 65.0%
!! GCAGCTGGCTTAGCCTTGGC+AGG - Chr7:81430277-81430296 None:intergenic 65.0%
!! GCTGGCTTAGCCTTAGCCGC+GGG - Chr7:81430436-81430455 None:intergenic 65.0%
!! GCTGGCTTAGCCTTGGCAGC+AGG - Chr7:81430328-81430347 None:intergenic 65.0%
GCAGGCTTTGCCTTGGCGGC+AGG - Chr7:81430310-81430329 None:intergenic 70.0%
GCCAGCTGCGAGGCCTGCTA+AGG + Chr7:81430486-81430505 MsG0780040705.01.T01:CDS 70.0%
GCCGCAGCAGCTCTCTTCCC+AGG - Chr7:81430538-81430557 None:intergenic 70.0%
GCCTTAGCAGGCCTCGCAGC+TGG - Chr7:81430490-81430509 None:intergenic 70.0%
GCGGGTTTCGCCTTGGCAGC+TGG - Chr7:81430454-81430473 None:intergenic 70.0%
GGGTTGCTCGACGGCGGAGA+CGG - Chr7:81429643-81429662 None:intergenic 70.0%
TGCTCGACGGCGGAGACGGT+GGG - Chr7:81429639-81429658 None:intergenic 70.0%
TTGCTCGACGGCGGAGACGG+TGG - Chr7:81429640-81429659 None:intergenic 70.0%
! CTTGGCGGCAGTGGGCTCGT+CGG - Chr7:81429718-81429737 None:intergenic 70.0%
! GCGGCAGCGGGCTTCTTAGC+TGG - Chr7:81430139-81430158 None:intergenic 70.0%
! GCGGCCGGCTCCTCCACAAT+GGG - Chr7:81429663-81429682 None:intergenic 70.0%
GGAAGAGGGTCGACGGCGGC+CGG - Chr7:81429678-81429697 None:intergenic 75.0%
! GGCGGCCGGCTCCTCCACAA+TGG - Chr7:81429664-81429683 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 81429532 81430901 81429532 ID=MsG0780040705.01;Name=MsG0780040705.01
Chr7 mRNA 81429532 81430901 81429532 ID=MsG0780040705.01.T01;Parent=MsG0780040705.01;Name=MsG0780040705.01.T01;_AED=0.49;_eAED=0.49;_QI=83|1|1|1|1|1|2|217|316
Chr7 exon 81429532 81429815 81429532 ID=MsG0780040705.01.T01:exon:20105;Parent=MsG0780040705.01.T01
Chr7 exon 81429935 81430901 81429935 ID=MsG0780040705.01.T01:exon:20106;Parent=MsG0780040705.01.T01
Chr7 five_prime_UTR 81429532 81429614 81429532 ID=MsG0780040705.01.T01:five_prime_utr;Parent=MsG0780040705.01.T01
Chr7 CDS 81429615 81429815 81429615 ID=MsG0780040705.01.T01:cds;Parent=MsG0780040705.01.T01
Chr7 CDS 81429935 81430684 81429935 ID=MsG0780040705.01.T01:cds;Parent=MsG0780040705.01.T01
Chr7 three_prime_UTR 81430685 81430901 81430685 ID=MsG0780040705.01.T01:three_prime_utr;Parent=MsG0780040705.01.T01
Gene Sequence

>MsG0780040705.01.T01

ATGGCTTCCTCTGTTGAAGAACCCACCGTCTCCGCCGTCGAGCAACCCATTGTGGAGGAGCCGGCCGCCGTCGACCCTCTTCCACCTGTCGTCAATGAATCCGACGAGCCCACTGCCGCCAAGCCCAAAAAAGCCCCCAAAGAGCCAAAACCCCGAAAGCCCGCTTCCAAGAACCCTCGCACTCACCCTACCTATGAAGAGATGGTGACGGACGCGATTGTGACTTTGAAGGAGAAGAACGGTTCAAGCCAGTATGCTTTGGCAAAGTTCATTGAAGAGAAGCATAAGAATCTTCCAGCGAACTTCAAGAAGATTCTTCTGGTTCAGATCAAGAAGCTCGTTGCTTCTGGGAAGCTTGTTAAGGTCAAGGGATCTTACAAGTTACCAGCTAAGTCTGCTGCTCCAGCTAAGAAGCCCGCTGCCGCAAAACCCAAGCCCAAGCCCAAGGCGAAAGCACCTGTAGCCAAGGCTCAGGCCAAGGCTCCAGCTGCTAAGTCTAAGGCGAAAGCTGCTCCTGCTAAGGCTAAGGCCAAAGCTGCTCCTGCCAAGGCTAAGCCAGCTGCTAAGGCTAAGCCTGCCGCCAAGGCAAAGCCTGCTGCCAAGGCTAAGCCAGCTGCAAAGGCGAAGCCTGCTGCGAAGCCCAAGGCGAAGGCTCCTGTTGCTAAGGCCAATGCTGTACCTGTAGCTGCTAAGGCAAAGCCCGCGGCTAAGGCTAAGCCAGCTGCCAAGGCGAAACCCGCTGTGAAGGCGAAGCCAGCTGCGAGGCCTGCTAAGGCTTCAAGAACTTCGACAAGGACATCACCTGGGAAGAGAGCTGCTGCGGCGAAACCAGCTGTGAAGAAAGCTGCTACGCCAGTGAAGAAGGCTGCACCGGCGAAGAAGGCTGCTACGCCAGTGAAGAAGGCTGCACCAGCAAGGAAGGCTCCAACAAAAAGGGGGGGTAGGAAGTGA

Protein sequence

>MsG0780040705.01.T01

MASSVEEPTVSAVEQPIVEEPAAVDPLPPVVNESDEPTAAKPKKAPKEPKPRKPASKNPRTHPTYEEMVTDAIVTLKEKNGSSQYALAKFIEEKHKNLPANFKKILLVQIKKLVASGKLVKVKGSYKLPAKSAAPAKKPAAAKPKPKPKAKAPVAKAQAKAPAAKSKAKAAPAKAKAKAAPAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPKAKAPVAKANAVPVAAKAKPAAKAKPAAKAKPAVKAKPAARPAKASRTSTRTSPGKRAAAAKPAVKKAATPVKKAAPAKKAATPVKKAAPARKAPTKRGGRK*