Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012279.01.T01 | XP_003598765.2 | 100 | 159 | 0 | 0 | 41 | 199 | 1 | 159 | 1.09E-110 | 323 |
| MsG0380012279.01.T02 | XP_003598765.2 | 100 | 159 | 0 | 0 | 41 | 199 | 1 | 159 | 1.09E-110 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012279.01.T01 | Q9SMW7 | 85.43 | 151 | 20 | 2 | 41 | 190 | 1 | 150 | 7.61E-86 | 253 |
| MsG0380012279.01.T02 | Q9SMW7 | 85.43 | 151 | 20 | 2 | 41 | 190 | 1 | 150 | 7.61E-86 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012279.01.T01 | B7FLX9 | 100.000 | 159 | 0 | 0 | 41 | 199 | 1 | 159 | 5.21e-111 | 323 |
| MsG0380012279.01.T02 | B7FLX9 | 100.000 | 159 | 0 | 0 | 41 | 199 | 1 | 159 | 5.21e-111 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048809.01 | MsG0380012279.01 | 0.888478 | 5.700118e-73 | 4.423172e-69 |
| MsG0180000097.01 | MsG0380012279.01 | 0.802734 | 4.874977e-49 | 2.406144e-46 |
| MsG0180000116.01 | MsG0380012279.01 | -0.870150 | 1.813426e-66 | 6.981358e-63 |
| MsG0180000240.01 | MsG0380012279.01 | 0.800162 | 1.640263e-48 | 7.583794e-46 |
| MsG0180000857.01 | MsG0380012279.01 | 0.801401 | 9.161298e-49 | 4.370926e-46 |
| MsG0180001312.01 | MsG0380012279.01 | -0.800333 | 1.513764e-48 | 7.029952e-46 |
| MsG0180003309.01 | MsG0380012279.01 | 0.804428 | 2.170818e-49 | 1.118936e-46 |
| MsG0180004085.01 | MsG0380012279.01 | -0.867661 | 1.160689e-65 | 4.084310e-62 |
| MsG0180004599.01 | MsG0380012279.01 | -0.809391 | 1.936766e-50 | 1.135730e-47 |
| MsG0180004600.01 | MsG0380012279.01 | -0.822851 | 1.898793e-53 | 1.608101e-50 |
| MsG0180004853.01 | MsG0380012279.01 | -0.828794 | 7.372627e-55 | 7.404054e-52 |
| MsG0180005354.01 | MsG0380012279.01 | -0.814229 | 1.713638e-51 | 1.143314e-48 |
| MsG0180005676.01 | MsG0380012279.01 | 0.805937 | 1.048971e-49 | 5.621196e-47 |
| MsG0280006346.01 | MsG0380012279.01 | 0.839787 | 1.285726e-57 | 1.794709e-54 |
| MsG0280006356.01 | MsG0380012279.01 | -0.802046 | 6.755045e-49 | 3.276036e-46 |
| MsG0280011419.01 | MsG0380012279.01 | 0.810495 | 1.120693e-50 | 6.765431e-48 |
| MsG0380011895.01 | MsG0380012279.01 | -0.807228 | 5.601508e-50 | 3.102928e-47 |
| MsG0380012279.01 | MsG0380014551.01 | 0.833904 | 4.078883e-56 | 4.764005e-53 |
| MsG0380012279.01 | MsG0380014770.01 | -0.804603 | 1.995799e-49 | 1.033415e-46 |
| MsG0380012279.01 | MsG0380014866.01 | -0.803585 | 3.249470e-49 | 1.639206e-46 |
| MsG0380012279.01 | MsG0380016182.01 | -0.806203 | 9.219204e-50 | 4.974300e-47 |
| MsG0380012279.01 | MsG0380016187.01 | -0.815180 | 1.055118e-51 | 7.222684e-49 |
| MsG0380012279.01 | MsG0380017048.01 | -0.807598 | 4.674935e-50 | 2.614541e-47 |
| MsG0380012279.01 | MsG0380017178.01 | 0.814530 | 1.470205e-51 | 9.889660e-49 |
| MsG0380012279.01 | MsG0380017220.01 | -0.806093 | 9.725490e-50 | 5.232495e-47 |
| MsG0380012279.01 | MsG0380017401.01 | -0.800386 | 1.476683e-48 | 6.866874e-46 |
| MsG0380012279.01 | MsG0380017551.01 | 0.847874 | 8.773058e-60 | 1.581147e-56 |
| MsG0380012279.01 | MsG0380017583.01 | 0.809309 | 2.016271e-50 | 1.179744e-47 |
| MsG0380012279.01 | MsG0480018236.01 | -0.832422 | 9.537248e-56 | 1.065493e-52 |
| MsG0380012279.01 | MsG0480018318.01 | -0.833493 | 5.165667e-56 | 5.958715e-53 |
| MsG0380012279.01 | MsG0480020781.01 | 0.818002 | 2.459884e-52 | 1.819341e-49 |
| MsG0380012279.01 | MsG0480022198.01 | -0.809088 | 2.249363e-50 | 1.308385e-47 |
| MsG0380012279.01 | MsG0480022615.01 | 0.869826 | 2.313638e-66 | 8.803585e-63 |
| MsG0380012279.01 | MsG0480022933.01 | -0.805178 | 1.512969e-49 | 7.951178e-47 |
| MsG0380012279.01 | MsG0480023025.01 | -0.823745 | 1.173734e-53 | 1.019562e-50 |
| MsG0380012279.01 | MsG0480023079.01 | -0.802916 | 4.469505e-49 | 2.216250e-46 |
| MsG0380012279.01 | MsG0480023248.01 | -0.867049 | 1.821794e-65 | 6.273012e-62 |
| MsG0380012279.01 | MsG0480023251.01 | -0.811789 | 5.871950e-51 | 3.668603e-48 |
| MsG0380012279.01 | MsG0480023670.01 | -0.807692 | 4.463908e-50 | 2.502720e-47 |
| MsG0380012279.01 | MsG0480023718.01 | -0.801234 | 9.914065e-49 | 4.710382e-46 |
| MsG0380012279.01 | MsG0480023937.01 | -0.852554 | 4.277583e-61 | 8.970798e-58 |
| MsG0380012279.01 | MsG0580024160.01 | -0.820792 | 5.688332e-53 | 4.545286e-50 |
| MsG0380012279.01 | MsG0580024288.01 | 0.807992 | 3.854638e-50 | 2.178230e-47 |
| MsG0380012279.01 | MsG0580024363.01 | 0.843491 | 1.356203e-58 | 2.125396e-55 |
| MsG0380012279.01 | MsG0580025532.01 | -0.811768 | 5.935291e-51 | 3.706064e-48 |
| MsG0380012279.01 | MsG0580025555.01 | -0.814690 | 1.355095e-51 | 9.154479e-49 |
| MsG0380012279.01 | MsG0580025749.01 | -0.822384 | 2.438441e-53 | 2.037970e-50 |
| MsG0380012279.01 | MsG0580026304.01 | -0.821479 | 3.950057e-53 | 3.217245e-50 |
| MsG0380012279.01 | MsG0580026810.01 | 0.826263 | 2.986081e-54 | 2.786426e-51 |
| MsG0380012279.01 | MsG0580029554.01 | -0.823885 | 1.088520e-53 | 9.492232e-51 |
| MsG0380012279.01 | MsG0580029999.01 | 0.845520 | 3.858513e-59 | 6.447110e-56 |
| MsG0380012279.01 | MsG0680030843.01 | 0.844825 | 5.947749e-59 | 9.720143e-56 |
| MsG0380012279.01 | MsG0680031061.01 | -0.807255 | 5.526300e-50 | 3.063474e-47 |
| MsG0380012279.01 | MsG0680031377.01 | 0.880242 | 6.449583e-70 | 3.606116e-66 |
| MsG0380012279.01 | MsG0680032058.01 | -0.817755 | 2.796796e-52 | 2.054613e-49 |
| MsG0380012279.01 | MsG0680034914.01 | -0.830216 | 3.326713e-55 | 3.482715e-52 |
| MsG0380012279.01 | MsG0680035844.01 | -0.800960 | 1.127551e-48 | 5.320497e-46 |
| MsG0380012279.01 | MsG0780036177.01 | 0.842250 | 2.899266e-58 | 4.369932e-55 |
| MsG0380012279.01 | MsG0780036289.01 | -0.803597 | 3.231926e-49 | 1.630803e-46 |
| MsG0380012279.01 | MsG0780038092.01 | -0.804399 | 2.201205e-49 | 1.133768e-46 |
| MsG0380012279.01 | MsG0780038231.01 | -0.802908 | 4.488290e-49 | 2.225075e-46 |
| MsG0380012279.01 | MsG0780039842.01 | 0.866617 | 2.500867e-65 | 8.482849e-62 |
| MsG0380012279.01 | MsG0780039867.01 | 0.833015 | 6.797538e-56 | 7.730098e-53 |
| MsG0380012279.01 | MsG0780039896.01 | -0.805046 | 1.612511e-49 | 8.445576e-47 |
| MsG0380012279.01 | MsG0780040576.01 | 0.872698 | 2.604151e-67 | 1.100294e-63 |
| MsG0380012279.01 | MsG0780040705.01 | 0.809657 | 1.697944e-50 | 1.002776e-47 |
| MsG0380012279.01 | MsG0780040947.01 | -0.826214 | 3.066511e-54 | 2.857627e-51 |
| MsG0380012279.01 | MsG0780041251.01 | 0.854284 | 1.363486e-61 | 3.030003e-58 |
| MsG0380012279.01 | MsG0780041376.01 | -0.809954 | 1.465787e-50 | 8.724411e-48 |
| MsG0380012279.01 | MsG0780041432.01 | -0.815994 | 6.949332e-52 | 4.864764e-49 |
| MsG0380012279.01 | MsG0880042064.01 | 0.819357 | 1.211616e-52 | 9.302049e-50 |
| MsG0380012279.01 | MsG0880042301.01 | -0.812646 | 3.818944e-51 | 2.441482e-48 |
| MsG0380012279.01 | MsG0880042553.01 | 0.800842 | 1.192112e-48 | 5.608092e-46 |
| MsG0380012279.01 | MsG0880042743.01 | -0.842831 | 2.033362e-58 | 3.120875e-55 |
| MsG0380012279.01 | MsG0880043804.01 | -0.803724 | 3.041345e-49 | 1.539581e-46 |
| MsG0380012279.01 | MsG0880044062.01 | 0.800668 | 1.293562e-48 | 6.058510e-46 |
| MsG0380012279.01 | MsG0880044455.01 | 0.851990 | 6.191005e-61 | 1.275031e-57 |
| MsG0380012279.01 | MsG0880044573.01 | -0.813385 | 2.628901e-51 | 1.714379e-48 |
| MsG0380012279.01 | MsG0880045707.01 | 0.811610 | 6.422230e-51 | 3.993342e-48 |
| MsG0380012279.01 | MsG0880046561.01 | -0.804015 | 2.646198e-49 | 1.349651e-46 |
| MsG0380012279.01 | MsG0880047425.01 | -0.821997 | 2.997419e-53 | 2.477472e-50 |
| MsG0380012279.01 | MsG0880047467.01 | 0.803099 | 4.096890e-49 | 2.040845e-46 |
| MsG0380012279.01 | MsG0880047594.01 | -0.836041 | 1.180224e-56 | 1.469662e-53 |
| MsG0280006462.01 | MsG0380012279.01 | -0.822381 | 2.441728e-53 | 2.040569e-50 |
| MsG0280007072.01 | MsG0380012279.01 | -0.804636 | 1.964645e-49 | 1.018121e-46 |
| MsG0280007390.01 | MsG0380012279.01 | 0.801932 | 7.131539e-49 | 3.448543e-46 |
| MsG0280007484.01 | MsG0380012279.01 | -0.838630 | 2.566236e-57 | 3.457619e-54 |
| MsG0280007496.01 | MsG0380012279.01 | -0.813813 | 2.116399e-51 | 1.396247e-48 |
| MsG0280007864.01 | MsG0380012279.01 | 0.905005 | 6.771300e-80 | 1.074086e-75 |
| MsG0280007984.01 | MsG0380012279.01 | -0.800201 | 1.610540e-48 | 7.453896e-46 |
| MsG0280008112.01 | MsG0380012279.01 | -0.808981 | 2.371253e-50 | 1.375284e-47 |
| MsG0280008894.01 | MsG0380012279.01 | -0.819464 | 1.145372e-52 | 8.820835e-50 |
| MsG0280009754.01 | MsG0380012279.01 | -0.807835 | 4.162779e-50 | 2.342666e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380012279.01 | MsG0480021293.01 | PPI |
| MsG0380012279.01 | MsG0380012279.01 | PPI |
| MsG0480021293.01 | MsG0380012279.01 | PPI |
| MsG0480021293.01 | MsG0380012279.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012279.01.T01 | MTR_3g020660 | 100.000 | 159 | 0 | 0 | 41 | 199 | 1 | 159 | 1.32e-114 | 323 |
| MsG0380012279.01.T01 | MTR_4g071000 | 89.241 | 158 | 17 | 0 | 41 | 198 | 1 | 158 | 3.72e-101 | 289 |
| MsG0380012279.01.T01 | MTR_3g020520 | 95.833 | 120 | 5 | 0 | 80 | 199 | 407 | 526 | 3.61e-76 | 238 |
| MsG0380012279.01.T01 | MTR_3g020640 | 83.453 | 139 | 16 | 1 | 61 | 199 | 1000 | 1131 | 3.32e-68 | 225 |
| MsG0380012279.01.T01 | MTR_3g020650 | 82.353 | 85 | 15 | 0 | 78 | 162 | 1028 | 1112 | 1.07e-39 | 144 |
| MsG0380012279.01.T02 | MTR_3g020660 | 100.000 | 159 | 0 | 0 | 41 | 199 | 1 | 159 | 1.32e-114 | 323 |
| MsG0380012279.01.T02 | MTR_4g071000 | 89.241 | 158 | 17 | 0 | 41 | 198 | 1 | 158 | 3.72e-101 | 289 |
| MsG0380012279.01.T02 | MTR_3g020520 | 95.833 | 120 | 5 | 0 | 80 | 199 | 407 | 526 | 3.61e-76 | 238 |
| MsG0380012279.01.T02 | MTR_3g020640 | 83.453 | 139 | 16 | 1 | 61 | 199 | 1000 | 1131 | 3.32e-68 | 225 |
| MsG0380012279.01.T02 | MTR_3g020650 | 82.353 | 85 | 15 | 0 | 78 | 162 | 1028 | 1112 | 1.07e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012279.01.T01 | AT1G17880 | 85.430 | 151 | 20 | 2 | 41 | 190 | 1 | 150 | 7.75e-87 | 253 |
| MsG0380012279.01.T01 | AT1G73230 | 85.987 | 157 | 21 | 1 | 41 | 196 | 1 | 157 | 5.60e-84 | 246 |
| MsG0380012279.01.T02 | AT1G17880 | 85.430 | 151 | 20 | 2 | 41 | 190 | 1 | 150 | 7.75e-87 | 253 |
| MsG0380012279.01.T02 | AT1G73230 | 85.987 | 157 | 21 | 1 | 41 | 196 | 1 | 157 | 5.60e-84 | 246 |
Find 0 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATTTCATTTATATTTT+TGG | - | Chr3:14020547-14020566 | MsG0380012279.01.T02:intron | 10.0% |
| !! | ATGATTGTGTAAAAAATATT+TGG | - | Chr3:14020468-14020487 | MsG0380012279.01.T02:intron | 15.0% |
| !! | ATTATAATACAGTAATAAGA+AGG | - | Chr3:14020429-14020448 | MsG0380012279.01.T02:intron | 15.0% |
| !! | TTTCCAAAATTAGTATAAAA+AGG | + | Chr3:14020654-14020673 | None:intergenic | 15.0% |
| !!! | AATCTTATATTCTTATTTCT+TGG | - | Chr3:14021931-14021950 | MsG0380012279.01.T02:intron | 15.0% |
| !!! | AATTGTTTTTTATTTGATTG+TGG | - | Chr3:14021069-14021088 | MsG0380012279.01.T02:intron | 15.0% |
| !!! | TTATTTCTTGGAAAAATTTA+GGG | - | Chr3:14021943-14021962 | MsG0380012279.01.T02:intron | 15.0% |
| !! | AAATTACTGACAAAAATTAC+AGG | + | Chr3:14020694-14020713 | None:intergenic | 20.0% |
| !!! | CTTATTTCTTGGAAAAATTT+AGG | - | Chr3:14021942-14021961 | MsG0380012279.01.T02:intron | 20.0% |
| !!! | GAACCTTTTTATACTAATTT+TGG | - | Chr3:14020648-14020667 | MsG0380012279.01.T02:intron | 20.0% |
| !!! | GATTTCATTTATATTTTTGG+TGG | - | Chr3:14020550-14020569 | MsG0380012279.01.T02:intron | 20.0% |
| !!! | TAGTTTTACGAAACAAAAAT+TGG | + | Chr3:14021029-14021048 | None:intergenic | 20.0% |
| !!! | TGTTTGATAATGTATCATTA+AGG | + | Chr3:14021498-14021517 | None:intergenic | 20.0% |
| ! | ACTAACTGTTAAACTTGAAT+TGG | - | Chr3:14021381-14021400 | MsG0380012279.01.T02:intron | 25.0% |
| ! | ATGTAAATCACATACCTAAT+TGG | + | Chr3:14021875-14021894 | None:intergenic | 25.0% |
| ! | CGTGAATTAATATTACCTTT+GGG | + | Chr3:14021318-14021337 | None:intergenic | 25.0% |
| ! | GTGAATTAATATTACCTTTG+GGG | + | Chr3:14021317-14021336 | None:intergenic | 25.0% |
| ! | TCATTTATTCATCTGTACAA+AGG | - | Chr3:14020750-14020769 | MsG0380012279.01.T02:intron | 25.0% |
| ! | TCGTGAATTAATATTACCTT+TGG | + | Chr3:14021319-14021338 | None:intergenic | 25.0% |
| ! | TGAAATCAGATCAAAATCAA+AGG | + | Chr3:14021779-14021798 | None:intergenic | 25.0% |
| !! | AAATTTTGAACATTCCAACA+TGG | + | Chr3:14021685-14021704 | None:intergenic | 25.0% |
| !! | TTCAGATTTTCCAAATTATC+TGG | + | Chr3:14021969-14021988 | None:intergenic | 25.0% |
| AAAATGAGGAAAACAATGCA+TGG | + | Chr3:14021731-14021750 | None:intergenic | 30.0% | |
| ATTGGAGTTTAAGAGATACA+TGG | + | Chr3:14021011-14021030 | None:intergenic | 30.0% | |
| CATCAATGTTCAGAAATTGT+AGG | - | Chr3:14021631-14021650 | MsG0380012279.01.T02:intron | 30.0% | |
| GAAGTCTCACAATTAAAATG+AGG | + | Chr3:14021745-14021764 | None:intergenic | 30.0% | |
| GATTGCTAGTAGTACATTAA+TGG | + | Chr3:14020942-14020961 | None:intergenic | 30.0% | |
| TATGTTTACACTGAGATATC+TGG | - | Chr3:14020369-14020388 | MsG0380012279.01.T02:CDS | 30.0% | |
| TGAGGAAGTCAACATATTTA+AGG | - | Chr3:14021266-14021285 | MsG0380012279.01.T02:intron | 30.0% | |
| TTGGATTCAGTCAATATGAT+AGG | - | Chr3:14020487-14020506 | MsG0380012279.01.T02:intron | 30.0% | |
| ! | AAATTTAGGGCCAGATAATT+TGG | - | Chr3:14021956-14021975 | MsG0380012279.01.T02:intron | 30.0% |
| !! | AAATATGTTGACTTCCTCAA+TGG | + | Chr3:14021265-14021284 | None:intergenic | 30.0% |
| !! | AGCCTTCTTCTTTCTAAAAT+GGG | + | Chr3:14021166-14021185 | None:intergenic | 30.0% |
| !! | ATATCTGGTTCTTTCTTTGA+TGG | - | Chr3:14020384-14020403 | MsG0380012279.01.T02:CDS | 30.0% |
| !! | ATTTTGATCTGATTTCATGC+TGG | - | Chr3:14021782-14021801 | MsG0380012279.01.T02:intron | 30.0% |
| !! | TATCTGGTTCTTTCTTTGAT+GGG | - | Chr3:14020385-14020404 | MsG0380012279.01.T02:CDS | 30.0% |
| !! | TGTAGAAAAGTTGATGAAGA+TGG | - | Chr3:14020837-14020856 | MsG0380012279.01.T02:intron | 30.0% |
| ACCTAATTGGTGAATGATGT+TGG | + | Chr3:14021862-14021881 | None:intergenic | 35.0% | |
| ATATGCTTACTCTTTGTCTG+AGG | + | Chr3:14021457-14021476 | None:intergenic | 35.0% | |
| ATCTATTGCTGCCAATACTT+GGG | - | Chr3:14021417-14021436 | MsG0380012279.01.T02:intron | 35.0% | |
| ATTCAGTTTCTAAACCCCAA+AGG | - | Chr3:14021300-14021319 | MsG0380012279.01.T02:intron | 35.0% | |
| CCTAATTGGTGAATGATGTT+GGG | + | Chr3:14021861-14021880 | None:intergenic | 35.0% | |
| CTAATTGGTGAATGATGTTG+GGG | + | Chr3:14021860-14021879 | None:intergenic | 35.0% | |
| CTGCTTATCAGAGATAATAC+AGG | + | Chr3:14021097-14021116 | None:intergenic | 35.0% | |
| TCAGTGTAAACATACACTGT+AGG | + | Chr3:14020363-14020382 | None:intergenic | 35.0% | |
| ! | ATATCCTGCAACTCTGAAAA+AGG | + | Chr3:14021834-14021853 | None:intergenic | 35.0% |
| ! | CAGCCTTCTTCTTTCTAAAA+TGG | + | Chr3:14021167-14021186 | None:intergenic | 35.0% |
| ! | TATCCTGCAACTCTGAAAAA+GGG | + | Chr3:14021833-14021852 | None:intergenic | 35.0% |
| !! | TGCCCATTTTAGAAAGAAGA+AGG | - | Chr3:14021161-14021180 | MsG0380012279.01.T02:CDS | 35.0% |
| ACATGGCACACATCATACAA+TGG | + | Chr3:14021668-14021687 | None:intergenic | 40.0% | |
| CAACTGAAACCTTACCACTT+TGG | - | Chr3:14020977-14020996 | MsG0380012279.01.T02:intron | 40.0% | |
| CATCTATTGCTGCCAATACT+TGG | - | Chr3:14021416-14021435 | MsG0380012279.01.T02:intron | 40.0% | |
| CCCAACATCATTCACCAATT+AGG | - | Chr3:14021858-14021877 | MsG0380012279.01.T02:intron | 40.0% | |
| CTGAAGAGAATTGGAGTGAA+TGG | - | Chr3:14021231-14021250 | MsG0380012279.01.T02:intron | 40.0% | |
| GAGGAAAACAATGCATGGTA+TGG | + | Chr3:14021726-14021745 | None:intergenic | 40.0% | |
| TTGTATGATGTGTGCCATGT+TGG | - | Chr3:14021668-14021687 | MsG0380012279.01.T02:intron | 40.0% | |
| ! | CAAAGCACTCTGAAGAGAAT+TGG | - | Chr3:14021222-14021241 | MsG0380012279.01.T02:intron | 40.0% |
| !! | GAAAAGTTGATGAAGATGGC+CGG | - | Chr3:14020841-14020860 | MsG0380012279.01.T02:intron | 40.0% |
| !!! | TTTCCCTTTTTCAGAGTTGC+AGG | - | Chr3:14021827-14021846 | MsG0380012279.01.T02:intron | 40.0% |
| ACCGCTAACAACCCAAGTAT+TGG | + | Chr3:14021431-14021450 | None:intergenic | 45.0% | |
| AGCTGAGCAATTTCAGAAGC+AGG | - | Chr3:14021995-14022014 | MsG0380012279.01.T02:intron | 45.0% | |
| CTGTAGGAACCTATGAAGCA+CGG | + | Chr3:14020347-14020366 | None:intergenic | 45.0% | |
| TCTGTTAGAACCGGTGGAAA+GGG | - | Chr3:14020865-14020884 | MsG0380012279.01.T02:intron | 45.0% | |
| TGAAACCTTACCACTTTGGC+TGG | - | Chr3:14020981-14021000 | MsG0380012279.01.T02:intron | 45.0% | |
| TTCTGTTAGAACCGGTGGAA+AGG | - | Chr3:14020864-14020883 | MsG0380012279.01.T02:intron | 45.0% | |
| ! | GCCAATACTTGGGTTGTTAG+CGG | - | Chr3:14021427-14021446 | MsG0380012279.01.T02:intron | 45.0% |
| !! | ATGTTGACTTCCTCAATGGC+AGG | + | Chr3:14021261-14021280 | None:intergenic | 45.0% |
| !! | TGTTGACTTCCTCAATGGCA+GGG | + | Chr3:14021260-14021279 | None:intergenic | 45.0% |
| ACATGGATAGCCAGCCAAAG+TGG | + | Chr3:14020994-14021013 | None:intergenic | 50.0% | |
| AGCAGTTTCAAAGGTCTCCC+CGG | + | Chr3:14022090-14022109 | None:intergenic | 50.0% | |
| CGTCTGTAGTAGCTGTCTTG+TGG | + | Chr3:14021191-14021210 | None:intergenic | 50.0% | |
| CTCCTCAGCAGCAGTTTCAA+AGG | + | Chr3:14022099-14022118 | None:intergenic | 50.0% | |
| GAATGGTATCCCTGCCATTG+AGG | - | Chr3:14021248-14021267 | MsG0380012279.01.T02:intron | 50.0% | |
| GATAGCCAGCCAAAGTGGTA+AGG | + | Chr3:14020989-14021008 | None:intergenic | 50.0% | |
| GATTAGTAGTGTCCCGGTGT+TGG | + | Chr3:14020314-14020333 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | + | Chr3:14020336-14020355 | None:intergenic | 50.0% | |
| TCTGACTGTACCCTTTCCAC+CGG | + | Chr3:14020878-14020897 | None:intergenic | 50.0% | |
| TGATGCAACTGCAGCACAAG+AGG | - | Chr3:14022034-14022053 | MsG0380012279.01.T02:CDS | 50.0% | |
| ! | ATGGCCGGTTCTGTTAGAAC+CGG | - | Chr3:14020856-14020875 | MsG0380012279.01.T02:intron | 50.0% |
| ! | GTGGAAAGGGTACAGTCAGA+AGG | - | Chr3:14020878-14020897 | MsG0380012279.01.T02:intron | 50.0% |
| !! | GACCTTTGAAACTGCTGCTG+AGG | - | Chr3:14022094-14022113 | MsG0380012279.01.T02:CDS | 50.0% |
| !! | TCCACCGGTTCTAACAGAAC+CGG | + | Chr3:14020863-14020882 | None:intergenic | 50.0% |
| !! | TCCTCGGATTAGTAGTGTCC+CGG | + | Chr3:14020320-14020339 | None:intergenic | 50.0% |
| AACTGCTGCTGAGGAGACCA+AGG | - | Chr3:14022103-14022122 | MsG0380012279.01.T02:CDS | 55.0% | |
| ACCGGGACACTACTAATCCG+AGG | - | Chr3:14020316-14020335 | MsG0380012279.01.T02:CDS | 55.0% | |
| CAGTTTCAAAGGTCTCCCCG+GGG | + | Chr3:14022088-14022107 | None:intergenic | 55.0% | |
| CTGTACCAGATCTTGTCCCC+GGG | - | Chr3:14022069-14022088 | MsG0380012279.01.T02:CDS | 55.0% | |
| GCAGTTTCAAAGGTCTCCCC+GGG | + | Chr3:14022089-14022108 | None:intergenic | 55.0% | |
| GCTGTACCAGATCTTGTCCC+CGG | - | Chr3:14022068-14022087 | MsG0380012279.01.T02:CDS | 55.0% | |
| GTTGCATCAGCTCCTGCTTC+AGG | + | Chr3:14022023-14022042 | None:intergenic | 55.0% | |
| TGTACCAGATCTTGTCCCCG+GGG | - | Chr3:14022070-14022089 | MsG0380012279.01.T02:CDS | 55.0% | |
| !! | GAGGAGTGTCCGTGCTTCAT+AGG | - | Chr3:14020335-14020354 | MsG0380012279.01.T02:CDS | 55.0% |
| CAGAAGCAGGCTCCTGAAGC+AGG | - | Chr3:14022008-14022027 | MsG0380012279.01.T02:intron | 60.0% | |
| ! | GCCGGTTCTGTTAGAACCGG+TGG | - | Chr3:14020859-14020878 | MsG0380012279.01.T02:intron | 60.0% |
| !! | CGTCGGTGTCGTGTTGGTGT+CGG | - | Chr3:14020274-14020293 | MsG0380012279.01.T02:CDS | 60.0% |
| !! | GTCGTGTTGGTGTCGGACAC+CGG | - | Chr3:14020281-14020300 | MsG0380012279.01.T02:CDS | 60.0% |
| GTCTCCCCGGGGACAAGATC+TGG | + | Chr3:14022077-14022096 | None:intergenic | 65.0% | |
| ACCGGCGCGTGTCCAACACC+GGG | - | Chr3:14020299-14020318 | MsG0380012279.01.T02:CDS | 70.0% | |
| CACCGGCGCGTGTCCAACAC+CGG | - | Chr3:14020298-14020317 | MsG0380012279.01.T02:CDS | 70.0% | |
| ! | TCCCGGTGTTGGACACGCGC+CGG | + | Chr3:14020303-14020322 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 14020271 | 14022130 | 14020271 | ID=MsG0380012279.01;Name=MsG0380012279.01 |
| Chr3 | mRNA | 14020271 | 14022130 | 14020271 | ID=MsG0380012279.01.T01;Parent=MsG0380012279.01;Name=MsG0380012279.01.T01;_AED=0.47;_eAED=0.54;_QI=0|0.83|0.85|1|0.83|0.71|7|0|199 |
| Chr3 | CDS | 14022011 | 14022130 | 14022011 | ID=MsG0380012279.01.T01:cds;Parent=MsG0380012279.01.T01 |
| Chr3 | CDS | 14021502 | 14021569 | 14021502 | ID=MsG0380012279.01.T01:cds;Parent=MsG0380012279.01.T01 |
| Chr3 | CDS | 14021080 | 14021228 | 14021080 | ID=MsG0380012279.01.T01:cds;Parent=MsG0380012279.01.T01 |
| Chr3 | CDS | 14020935 | 14020991 | 14020935 | ID=MsG0380012279.01.T01:cds;Parent=MsG0380012279.01.T01 |
| Chr3 | CDS | 14020522 | 14020560 | 14020522 | ID=MsG0380012279.01.T01:cds;Parent=MsG0380012279.01.T01 |
| Chr3 | CDS | 14020271 | 14020437 | 14020271 | ID=MsG0380012279.01.T01:cds;Parent=MsG0380012279.01.T01 |
| Chr3 | mRNA | 14020271 | 14022130 | 14020271 | ID=MsG0380012279.01.T02;Parent=MsG0380012279.01;Name=MsG0380012279.01.T02;_AED=0.47;_eAED=0.55;_QI=0|0.8|0.83|1|1|1|6|0|199 |
| Chr3 | CDS | 14022011 | 14022130 | 14022011 | ID=MsG0380012279.01.T02:cds;Parent=MsG0380012279.01.T02 |
| Chr3 | CDS | 14021502 | 14021569 | 14021502 | ID=MsG0380012279.01.T02:cds;Parent=MsG0380012279.01.T02 |
| Chr3 | CDS | 14021080 | 14021228 | 14021080 | ID=MsG0380012279.01.T02:cds;Parent=MsG0380012279.01.T02 |
| Chr3 | CDS | 14020935 | 14020991 | 14020935 | ID=MsG0380012279.01.T02:cds;Parent=MsG0380012279.01.T02 |
| Chr3 | CDS | 14020522 | 14020560 | 14020522 | ID=MsG0380012279.01.T02:cds;Parent=MsG0380012279.01.T02 |
| Chr3 | CDS | 14020271 | 14020437 | 14020271 | ID=MsG0380012279.01.T02:cds;Parent=MsG0380012279.01.T02 |
| Gene Sequence |
| Protein sequence |
