AlfalfaGEDB | MsG0380017178.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017178.01

KEGG: -
GO: -
PFAM: PF13943

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017178.01.T01	XP_013461728.1	98.137	161	3	0	1	161	1	161	5.01E-106	310

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017178.01.T01	Q9M7N6	70.833	96	27	1	26	121	18	112	5.67E-43	142

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017178.01.T01	A0A072V335	98.137	161	3	0	1	161	1	161	2.39e-106	310

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048683.01	MsG0380017178.01	-0.802100	6.585898e-49	3.198387e-46
MsG0080048761.01	MsG0380017178.01	0.867302	1.512326e-65	5.254952e-62
MsG0080048865.01	MsG0380017178.01	-0.814695	1.351241e-51	9.129828e-49
MsG0080049147.01	MsG0380017178.01	-0.802456	5.563620e-49	2.726593e-46
MsG0180000152.01	MsG0380017178.01	-0.805309	1.420623e-49	7.490885e-47
MsG0180000240.01	MsG0380017178.01	0.858916	5.931820e-63	1.538719e-59
MsG0180000280.01	MsG0380017178.01	0.834223	3.394174e-56	4.001763e-53
MsG0180000470.01	MsG0380017178.01	-0.802316	5.943099e-49	2.902431e-46
MsG0180000546.01	MsG0380017178.01	-0.845283	4.472290e-59	7.416281e-56
MsG0180000828.01	MsG0380017178.01	-0.805089	1.579568e-49	8.282197e-47
MsG0180001149.01	MsG0380017178.01	-0.809087	2.250461e-50	1.308995e-47
MsG0180001663.01	MsG0380017178.01	-0.805982	1.026267e-49	5.506085e-47
MsG0180001712.01	MsG0380017178.01	-0.805497	1.297343e-49	6.873915e-47
MsG0180002977.01	MsG0380017178.01	0.870425	1.474130e-66	5.731476e-63
MsG0180003309.01	MsG0380017178.01	0.843131	1.692102e-58	2.621607e-55
MsG0180004025.01	MsG0380017178.01	-0.818508	1.890024e-52	1.417494e-49
MsG0180004599.01	MsG0380017178.01	-0.810479	1.129653e-50	6.816700e-48
MsG0180004600.01	MsG0380017178.01	-0.815322	9.808716e-52	6.741147e-49
MsG0180005303.01	MsG0380017178.01	0.803375	3.592623e-49	1.802374e-46
MsG0180005515.01	MsG0380017178.01	0.809736	1.632555e-50	9.661850e-48
MsG0180005676.01	MsG0380017178.01	0.814298	1.654310e-51	1.105865e-48
MsG0180005686.01	MsG0380017178.01	-0.801709	7.922659e-49	3.809479e-46
MsG0180006064.01	MsG0380017178.01	0.835774	1.379334e-56	1.703764e-53
MsG0180006144.01	MsG0380017178.01	-0.820663	6.088518e-53	4.847378e-50
MsG0180006220.01	MsG0380017178.01	-0.817855	2.655839e-52	1.956366e-49
MsG0280006346.01	MsG0380017178.01	0.806377	8.471483e-50	4.590926e-47
MsG0280010943.01	MsG0380017178.01	-0.807213	5.640188e-50	3.123225e-47
MsG0280011059.01	MsG0380017178.01	0.867467	1.339245e-65	4.680764e-62
MsG0280011163.01	MsG0380017178.01	-0.806430	8.258216e-50	4.481402e-47
MsG0280011304.01	MsG0380017178.01	-0.805098	1.572776e-49	8.248410e-47
MsG0280011376.01	MsG0380017178.01	-0.882321	1.149386e-70	6.970731e-67
MsG0380011895.01	MsG0380017178.01	-0.813938	1.986636e-51	1.315000e-48
MsG0380012005.01	MsG0380017178.01	-0.857005	2.191767e-62	5.330574e-59
MsG0380012007.01	MsG0380017178.01	-0.827145	1.838867e-54	1.760077e-51
MsG0380012279.01	MsG0380017178.01	0.814530	1.470205e-51	9.889660e-49
MsG0380013853.01	MsG0380017178.01	-0.862452	5.016296e-64	1.469883e-60
MsG0380014727.01	MsG0380017178.01	-0.826097	3.270777e-54	3.037652e-51
MsG0380014770.01	MsG0380017178.01	-0.811452	6.952981e-51	4.305527e-48
MsG0380014866.01	MsG0380017178.01	-0.814820	1.268317e-51	8.598136e-49
MsG0380015066.01	MsG0380017178.01	0.817973	2.497242e-52	1.845418e-49
MsG0380015215.01	MsG0380017178.01	0.817841	2.675037e-52	1.969767e-49
MsG0380015533.01	MsG0380017178.01	-0.821964	3.050592e-53	2.518952e-50
MsG0380016004.01	MsG0380017178.01	-0.824042	1.000267e-53	8.759954e-51
MsG0380016064.01	MsG0380017178.01	-0.813486	2.497812e-51	1.633396e-48
MsG0380016182.01	MsG0380017178.01	-0.826048	3.358886e-54	3.115310e-51
MsG0380016191.01	MsG0380017178.01	0.866392	2.949196e-65	9.923552e-62
MsG0380016342.01	MsG0380017178.01	0.805987	1.023692e-49	5.492977e-47
MsG0380016740.01	MsG0380017178.01	-0.804191	2.431871e-49	1.245900e-46
MsG0380016828.01	MsG0380017178.01	0.839184	1.844540e-57	2.527405e-54
MsG0380017023.01	MsG0380017178.01	-0.817867	2.639099e-52	1.944637e-49
MsG0380017085.01	MsG0380017178.01	-0.822510	2.279562e-53	1.911965e-50
MsG0380017126.01	MsG0380017178.01	-0.830017	3.720273e-55	3.872095e-52
MsG0380017178.01	MsG0380017263.01	0.861213	1.201542e-63	3.373677e-60
MsG0380017178.01	MsG0380017265.01	0.836099	1.140926e-56	1.423289e-53
MsG0380017178.01	MsG0380017266.01	0.835030	2.127029e-56	2.569210e-53
MsG0380017178.01	MsG0380017551.01	0.823457	1.371090e-53	1.181135e-50
MsG0380017178.01	MsG0380017878.01	0.801114	1.048885e-48	4.968478e-46
MsG0380017178.01	MsG0380017941.01	-0.835946	1.248102e-56	1.549562e-53
MsG0380017178.01	MsG0480018236.01	-0.814100	1.829826e-51	1.216558e-48
MsG0380017178.01	MsG0480018318.01	-0.842922	1.923511e-58	2.960514e-55
MsG0380017178.01	MsG0480018331.01	-0.806543	7.817912e-50	4.254822e-47
MsG0380017178.01	MsG0480018402.01	-0.807415	5.111252e-50	2.845243e-47
MsG0380017178.01	MsG0480018911.01	-0.809333	1.993208e-50	1.167007e-47
MsG0380017178.01	MsG0480018964.01	-0.816879	4.403686e-52	3.158400e-49
MsG0380017178.01	MsG0480019434.01	-0.803569	3.274978e-49	1.651393e-46
MsG0380017178.01	MsG0480019435.01	-0.829165	5.997204e-55	6.089215e-52
MsG0380017178.01	MsG0480019689.01	0.814772	1.299673e-51	8.799046e-49
MsG0380017178.01	MsG0480020024.01	-0.828321	9.593407e-55	9.502613e-52
MsG0380017178.01	MsG0480020327.01	0.827303	1.685229e-54	1.620625e-51
MsG0380017178.01	MsG0480020788.01	-0.802891	4.524196e-49	2.241916e-46
MsG0380017178.01	MsG0480020887.01	-0.805749	1.148680e-49	6.126280e-47
MsG0380017178.01	MsG0480021280.01	-0.819605	1.063850e-52	8.224626e-50
MsG0380017178.01	MsG0480021776.01	0.851741	7.286372e-61	1.489225e-57
MsG0380017178.01	MsG0480022222.01	-0.818164	2.260935e-52	1.679637e-49
MsG0380017178.01	MsG0480022259.01	-0.810039	1.405467e-50	8.384058e-48
MsG0380017178.01	MsG0480022262.01	-0.800852	1.186478e-48	5.583111e-46
MsG0380017178.01	MsG0480022615.01	0.861883	7.501277e-64	2.154392e-60
MsG0380017178.01	MsG0480022707.01	-0.804619	1.980051e-49	1.025685e-46
MsG0380017178.01	MsG0480022827.01	-0.816920	4.312105e-52	3.096049e-49
MsG0380017178.01	MsG0480023251.01	-0.819852	9.340954e-53	7.271692e-50
MsG0380017178.01	MsG0480023654.01	-0.828145	1.058028e-54	1.042714e-51
MsG0380017178.01	MsG0480023936.01	0.854938	8.815995e-62	2.001702e-58
MsG0380017178.01	MsG0580024363.01	0.888184	7.392189e-73	5.667355e-69
MsG0380017178.01	MsG0580024472.01	-0.803932	2.753609e-49	1.401515e-46
MsG0380017178.01	MsG0580024928.01	0.866079	3.704301e-65	1.232738e-61
MsG0380017178.01	MsG0580025182.01	0.803958	2.718973e-49	1.384777e-46
MsG0380017178.01	MsG0580025826.01	-0.828756	7.530981e-55	7.554388e-52
MsG0380017178.01	MsG0580026511.01	-0.811236	7.745017e-51	4.768684e-48
MsG0380017178.01	MsG0580027103.01	-0.801830	7.480932e-49	3.608331e-46
MsG0380017178.01	MsG0580027401.01	-0.831550	1.566409e-55	1.705622e-52
MsG0380017178.01	MsG0580028527.01	-0.803876	2.827915e-49	1.437258e-46
MsG0380017178.01	MsG0580028901.01	-0.831964	1.238478e-55	1.365129e-52
MsG0380017178.01	MsG0580029500.01	0.803700	3.076328e-49	1.556341e-46
MsG0380017178.01	MsG0580029514.01	0.819511	1.117716e-52	8.618895e-50
MsG0380017178.01	MsG0580029925.01	-0.818042	2.409307e-52	1.783784e-49
MsG0380017178.01	MsG0580029999.01	0.830466	2.891167e-55	3.048234e-52
MsG0380017178.01	MsG0680030316.01	-0.803246	3.819576e-49	1.909975e-46
MsG0380017178.01	MsG0680030356.01	0.814565	1.444023e-51	9.722936e-49
MsG0380017178.01	MsG0680030636.01	-0.841175	5.572729e-58	8.121120e-55
MsG0380017178.01	MsG0680030992.01	-0.839873	1.220852e-57	1.708707e-54
MsG0380017178.01	MsG0680031334.01	-0.834971	2.200817e-56	2.654004e-53
MsG0380017178.01	MsG0680031377.01	0.824817	6.571433e-54	5.885026e-51
MsG0380017178.01	MsG0680031446.01	0.823918	1.069377e-53	9.333668e-51
MsG0380017178.01	MsG0680032058.01	-0.848246	6.928239e-60	1.263475e-56
MsG0380017178.01	MsG0680032203.01	-0.827080	1.906140e-54	1.821119e-51
MsG0380017178.01	MsG0680032204.01	-0.856239	3.679652e-62	8.723758e-59
MsG0380017178.01	MsG0680032460.01	0.816582	5.135554e-52	3.653193e-49
MsG0380017178.01	MsG0680032996.01	-0.823333	1.465408e-53	1.257982e-50
MsG0380017178.01	MsG0680033465.01	-0.802485	5.487454e-49	2.691188e-46
MsG0380017178.01	MsG0680035311.01	0.816851	4.469278e-52	3.202853e-49
MsG0380017178.01	MsG0780035948.01	-0.821513	3.880395e-53	3.163364e-50
MsG0380017178.01	MsG0780035957.01	-0.810857	9.355436e-51	5.703000e-48
MsG0380017178.01	MsG0780036978.01	-0.803619	3.197927e-49	1.614516e-46
MsG0380017178.01	MsG0780037082.01	-0.827545	1.474767e-54	1.428111e-51
MsG0380017178.01	MsG0780038309.01	0.843612	1.258961e-58	1.980782e-55
MsG0380017178.01	MsG0780038473.01	0.849096	4.027055e-60	7.550597e-57
MsG0380017178.01	MsG0780038833.01	-0.827190	1.793778e-54	1.719331e-51
MsG0380017178.01	MsG0780039143.01	-0.816526	5.284175e-52	3.753315e-49
MsG0380017178.01	MsG0780039178.01	-0.826062	3.332627e-54	3.092111e-51
MsG0380017178.01	MsG0780039867.01	0.857715	1.350950e-62	3.365444e-59
MsG0380017178.01	MsG0780040148.01	0.856967	2.247929e-62	5.460405e-59
MsG0380017178.01	MsG0780040566.01	0.877176	7.748287e-69	3.859115e-65
MsG0380017178.01	MsG0780040576.01	0.905398	4.475781e-80	7.225225e-76
MsG0380017178.01	MsG0780040596.01	-0.848456	6.058407e-60	1.112538e-56
MsG0380017178.01	MsG0780040705.01	0.820384	7.058201e-53	5.576725e-50
MsG0380017178.01	MsG0780041015.01	0.806779	6.968949e-50	3.815703e-47
MsG0380017178.01	MsG0780041441.01	-0.801214	1.000663e-48	4.751941e-46
MsG0380017178.01	MsG0780041734.01	0.801569	8.465048e-49	4.055904e-46
MsG0380017178.01	MsG0880041852.01	-0.805254	1.458799e-49	7.681103e-47
MsG0380017178.01	MsG0880042022.01	-0.810160	1.323354e-50	7.918877e-48
MsG0380017178.01	MsG0880042134.01	-0.819509	1.118761e-52	8.626541e-50
MsG0380017178.01	MsG0880042161.01	-0.830061	3.629305e-55	3.782180e-52
MsG0380017178.01	MsG0880042612.01	-0.801077	1.067539e-48	5.052181e-46
MsG0380017178.01	MsG0880042987.01	0.815058	1.123127e-51	7.662848e-49
MsG0380017178.01	MsG0880044389.01	0.805969	1.032470e-49	5.537515e-47
MsG0380017178.01	MsG0880044455.01	0.809976	1.450046e-50	8.635521e-48
MsG0380017178.01	MsG0880044573.01	-0.852883	3.446782e-61	7.308484e-58
MsG0380017178.01	MsG0880044611.01	0.832284	1.031810e-55	1.147889e-52
MsG0380017178.01	MsG0880045371.01	-0.802777	4.776756e-49	2.360270e-46
MsG0380017178.01	MsG0880045707.01	0.821973	3.036281e-53	2.507751e-50
MsG0380017178.01	MsG0880045926.01	-0.806058	9.888863e-50	5.315824e-47
MsG0380017178.01	MsG0880046809.01	-0.812643	3.824410e-51	2.444781e-48
MsG0380017178.01	MsG0880046930.01	-0.815245	1.020227e-51	6.996384e-49
MsG0380017178.01	MsG0880046963.01	0.803966	2.709157e-49	1.380023e-46
MsG0380017178.01	MsG0880047267.01	-0.821798	3.333278e-53	2.739520e-50
MsG0380017178.01	MsG0880047481.01	0.818371	2.029653e-52	1.516586e-49
MsG0380017178.01	MsG0880047689.01	0.805016	1.636156e-49	8.562678e-47
MsG0280006588.01	MsG0380017178.01	-0.810523	1.104718e-50	6.674033e-48
MsG0280006753.01	MsG0380017178.01	0.825469	4.607677e-54	4.203385e-51
MsG0280007224.01	MsG0380017178.01	0.833742	4.478868e-56	5.204947e-53
MsG0280007763.01	MsG0380017178.01	-0.813180	2.916722e-51	1.891273e-48
MsG0280007864.01	MsG0380017178.01	0.837310	5.606531e-57	7.253801e-54
MsG0280008894.01	MsG0380017178.01	-0.811253	7.677438e-51	4.729293e-48
MsG0280009637.01	MsG0380017178.01	0.802515	5.409632e-49	2.655000e-46
MsG0280010204.01	MsG0380017178.01	-0.817912	2.577366e-52	1.901511e-49
MsG0280010378.01	MsG0380017178.01	-0.828532	8.532357e-55	8.504130e-52
MsG0280010443.01	MsG0380017178.01	-0.808895	2.473684e-50	1.431360e-47
MsG0280010532.01	MsG0380017178.01	0.808969	2.384537e-50	1.382574e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017178.01.T01	MTR_3g102500	98.137	161	3	0	1	161	1	161	6.07e-110	310
MsG0380017178.01.T01	MTR_1g018710	57.851	121	42	3	1	121	1	112	1.12e-37	126
MsG0380017178.01.T01	MTR_1g072250	44.318	88	48	1	36	122	17	104	5.53e-18	80.1
MsG0380017178.01.T01	MTR_1g105040	38.596	114	65	3	26	136	6	117	3.03e-16	75.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017178.01.T01	AT1G47200	62.500	96	35	1	26	121	50	144	9.04e-38	127
MsG0380017178.01.T01	AT5G43070	47.761	134	61	2	1	126	1	133	6.55e-36	122
MsG0380017178.01.T01	AT5G27940	40.385	104	56	2	27	127	41	141	2.93e-21	84.7
MsG0380017178.01.T01	AT3G63130	39.000	100	59	2	36	133	17	116	2.23e-15	72.8
MsG0380017178.01.T01	AT3G63130	39.000	100	59	2	36	133	17	116	2.23e-15	72.8
MsG0380017178.01.T01	AT5G19320	33.981	103	67	1	27	128	7	109	1.10e-13	68.2
MsG0380017178.01.T01	AT5G19320	33.981	103	67	1	27	128	7	109	1.10e-13	68.2

Find 65 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCCGGTGACTCCGCCGTTCC+TGG	0.273963	3:-93038806	MsG0380017178.01.T01:CDS
CATCTTCTTACTGATTTCCT+TGG	0.339205	3:+93038748	None:intergenic
GACGGCGTCGCGGGTGCGTT+GGG	0.359562	3:+93038949	None:intergenic
AACGGTAGGTCTAGCCTTAA+CGG	0.377656	3:+93038718	None:intergenic
AAGGACGGAGGGAGTGGTTA+GGG	0.381916	3:+93038907	None:intergenic
TATGCTGAATCCGGCGGAGG+GGG	0.384348	3:+93038982	None:intergenic
CCGTTCCTGGCGGTGGTGAC+GGG	0.385812	3:-93038793	MsG0380017178.01.T01:CDS
GAAGATGCCTTCTCTGTTGC+CGG	0.386460	3:-93038824	MsG0380017178.01.T01:CDS
GCCGTTCCTGGCGGTGGTGA+CGG	0.396124	3:-93038794	MsG0380017178.01.T01:CDS
AAAGGACGGAGGGAGTGGTT+AGG	0.399888	3:+93038906	None:intergenic
TGATTCTAGCGCCGTTGATA+AGG	0.405504	3:-93038696	MsG0380017178.01.T01:CDS
CCTCCGCCGGATTCAGCATA+TGG	0.414915	3:-93038979	MsG0380017178.01.T01:CDS
GGGCAATGTGCCGTAGCGTT+TGG	0.420216	3:+93038883	None:intergenic
GTTAGAGTCCGATGAGGTTA+CGG	0.425356	3:+93039045	None:intergenic
CCATATGCTGAATCCGGCGG+AGG	0.431909	3:+93038979	None:intergenic
GGCGTCGCGGGTGCGTTGGG+TGG	0.444388	3:+93038952	None:intergenic
TGACGGCGTCGCGGGTGCGT+TGG	0.444623	3:+93038948	None:intergenic
TGACGGGATTGAGATCCTTC+AGG	0.459478	3:-93038777	MsG0380017178.01.T01:CDS
CATATGCTGAATCCGGCGGA+GGG	0.462008	3:+93038980	None:intergenic
GCGAGTGATGACGGCGTCGC+GGG	0.464948	3:+93038940	None:intergenic
GCGTCGCGGGTGCGTTGGGT+GGG	0.477005	3:+93038953	None:intergenic
GGGTGGCCATATGCTGAATC+CGG	0.477190	3:+93038973	None:intergenic
AGCGGAGGCGGCTTCGTCGG+AGG	0.481716	3:+93038862	None:intergenic
TCGCGGGTGCGTTGGGTGGG+TGG	0.491919	3:+93038956	None:intergenic
GCCAGGAACGGCGGAGTCAC+CGG	0.492843	3:+93038805	None:intergenic
AGCAGCGGAGGCGGCTTCGT+CGG	0.495524	3:+93038859	None:intergenic
GAAGATGCTTGAAACCGTTA+AGG	0.498552	3:-93038732	MsG0380017178.01.T01:CDS
GACTCCGCCGTTCCTGGCGG+TGG	0.499089	3:-93038800	MsG0380017178.01.T01:CDS
GCGGAGGCGGCTTCGTCGGA+GGG	0.515254	3:+93038863	None:intergenic
ATGCTGAATCCGGCGGAGGG+GGG	0.517309	3:+93038983	None:intergenic
CTCGATCTGACGAGCAGCGG+AGG	0.518920	3:+93038847	None:intergenic
TTTGGAAAGGACGGAGGGAG+TGG	0.526920	3:+93038901	None:intergenic
CCCGTCACCACCGCCAGGAA+CGG	0.545413	3:+93038793	None:intergenic
TTCGATTAAGCGAGTGATGA+CGG	0.547064	3:+93038931	None:intergenic
ATATGCTGAATCCGGCGGAG+GGG	0.550066	3:+93038981	None:intergenic
GATCCTTCAGGTGTATTCCA+AGG	0.552260	3:-93038765	MsG0380017178.01.T01:CDS
GATCTGACGAGCAGCGGAGG+CGG	0.560720	3:+93038850	None:intergenic
GGAGTCACCGGCAACAGAGA+AGG	0.560862	3:+93038817	None:intergenic
TCAATCCCGTCACCACCGCC+AGG	0.562207	3:+93038788	None:intergenic
TACGGTTGTGACTTCTGAGT+CGG	0.571822	3:+93039063	None:intergenic
TGATAAGGACGCTGCTGCTG+TGG	0.577989	3:-93038681	MsG0380017178.01.T01:CDS
AGCAGCAGCGTCCTTATCAA+CGG	0.578380	3:+93038685	None:intergenic
CTCCGCTGCTCGTCAGATCG+AGG	0.582950	3:-93038846	MsG0380017178.01.T01:CDS
GCCGTAGCGTTTGGAAAGGA+CGG	0.591975	3:+93038892	None:intergenic
AGTCTCCGTCTCGATCTTCG+CGG	0.594787	3:+93038613	None:intergenic
TCAGCAGCATCCTCTGCAGA+AGG	0.602802	3:+93038638	None:intergenic
ATCAACGGCGCTAGAATCAA+CGG	0.603734	3:+93038700	None:intergenic
TTTCCTTGGAATACACCTGA+AGG	0.605904	3:+93038762	None:intergenic
TTCCTCGATCTGACGAGCAG+CGG	0.613011	3:+93038844	None:intergenic
GTCACCACCGCCAGGAACGG+CGG	0.615098	3:+93038796	None:intergenic
AGCGAGTGATGACGGCGTCG+CGG	0.615225	3:+93038939	None:intergenic
AGTCACAACCGTAACCTCAT+CGG	0.620023	3:-93039053	MsG0380017178.01.T01:CDS
TGGCCATATGCTGAATCCGG+CGG	0.621199	3:+93038976	None:intergenic
TGATGATCCTCCTTCTGCAG+AGG	0.625146	3:-93038648	MsG0380017178.01.T01:CDS
ATGTGCCGTAGCGTTTGGAA+AGG	0.630318	3:+93038888	None:intergenic
GCAGCATCCTCTGCAGAAGG+AGG	0.632854	3:+93038641	None:intergenic
TCCGTCCTTTCCAAACGCTA+CGG	0.635061	3:-93038893	MsG0380017178.01.T01:CDS
TAGCGTTTGGAAAGGACGGA+GGG	0.638385	3:+93038896	None:intergenic
GAAGGAGGATCATCAACGGT+CGG	0.638649	3:+93038656	None:intergenic
TGCAGAAGGAGGATCATCAA+CGG	0.659742	3:+93038652	None:intergenic
GTAGCGTTTGGAAAGGACGG+AGG	0.678784	3:+93038895	None:intergenic
TGAATCCGCGAAGATCGAGA+CGG	0.689865	3:-93038618	MsG0380017178.01.T01:CDS
ACGGCGCTAGAATCAACGGT+AGG	0.692601	3:+93038704	None:intergenic
GGTGACTCCGCCGTTCCTGG+CGG	0.703703	3:-93038803	MsG0380017178.01.T01:CDS
AACGGAGTTAGAGTCCGATG+AGG	0.729175	3:+93039039	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CATCTTCTTACTGATTTCCT+TGG	+	Chr3:93038926-93038945	None:intergenic	35.0%
	GAAGATGCTTGAAACCGTTA+AGG	-	Chr3:93038939-93038958	MsG0380017178.01.T01:CDS	40.0%
	TTCGATTAAGCGAGTGATGA+CGG	+	Chr3:93038743-93038762	None:intergenic	40.0%
	TTTCCTTGGAATACACCTGA+AGG	+	Chr3:93038912-93038931	None:intergenic	40.0%
	AGTCACAACCGTAACCTCAT+CGG	-	Chr3:93038618-93038637	MsG0380017178.01.T01:CDS	45.0%
	ATCAACGGCGCTAGAATCAA+CGG	+	Chr3:93038974-93038993	None:intergenic	45.0%
	GATCCTTCAGGTGTATTCCA+AGG	-	Chr3:93038906-93038925	MsG0380017178.01.T01:CDS	45.0%
	GTTAGAGTCCGATGAGGTTA+CGG	+	Chr3:93038629-93038648	None:intergenic	45.0%
	TACGGTTGTGACTTCTGAGT+CGG	+	Chr3:93038611-93038630	None:intergenic	45.0%
	TGATTCTAGCGCCGTTGATA+AGG	-	Chr3:93038975-93038994	MsG0380017178.01.T01:CDS	45.0%
	TGCAGAAGGAGGATCATCAA+CGG	+	Chr3:93039022-93039041	None:intergenic	45.0%
!!	AACGGTAGGTCTAGCCTTAA+CGG	+	Chr3:93038956-93038975	None:intergenic	45.0%
	AACGGAGTTAGAGTCCGATG+AGG	+	Chr3:93038635-93038654	None:intergenic	50.0%
	AGCAGCAGCGTCCTTATCAA+CGG	+	Chr3:93038989-93039008	None:intergenic	50.0%
	ATGTGCCGTAGCGTTTGGAA+AGG	+	Chr3:93038786-93038805	None:intergenic	50.0%
	GAAGATGCCTTCTCTGTTGC+CGG	-	Chr3:93038847-93038866	MsG0380017178.01.T01:CDS	50.0%
	GAAGGAGGATCATCAACGGT+CGG	+	Chr3:93039018-93039037	None:intergenic	50.0%
	TAGCGTTTGGAAAGGACGGA+GGG	+	Chr3:93038778-93038797	None:intergenic	50.0%
	TCCGTCCTTTCCAAACGCTA+CGG	-	Chr3:93038778-93038797	MsG0380017178.01.T01:CDS	50.0%
	TGAATCCGCGAAGATCGAGA+CGG	-	Chr3:93039053-93039072	MsG0380017178.01.T01:CDS	50.0%
	TGACGGGATTGAGATCCTTC+AGG	-	Chr3:93038894-93038913	MsG0380017178.01.T01:CDS	50.0%
	TGATGATCCTCCTTCTGCAG+AGG	-	Chr3:93039023-93039042	MsG0380017178.01.T01:CDS	50.0%
!!	GTTTGGTCGCCGTTTTGTTG+CGG	+	Chr3:93038664-93038683	None:intergenic	50.0%
	AAAGGACGGAGGGAGTGGTT+AGG	+	Chr3:93038768-93038787	None:intergenic	55.0%
	AAGGACGGAGGGAGTGGTTA+GGG	+	Chr3:93038767-93038786	None:intergenic	55.0%
	ACGGCGCTAGAATCAACGGT+AGG	+	Chr3:93038970-93038989	None:intergenic	55.0%
	AGTCTCCGTCTCGATCTTCG+CGG	+	Chr3:93039061-93039080	None:intergenic	55.0%
	ATATGCTGAATCCGGCGGAG+GGG	+	Chr3:93038693-93038712	None:intergenic	55.0%
	CATATGCTGAATCCGGCGGA+GGG	+	Chr3:93038694-93038713	None:intergenic	55.0%
	GCCGTAGCGTTTGGAAAGGA+CGG	+	Chr3:93038782-93038801	None:intergenic	55.0%
	GGGTGGCCATATGCTGAATC+CGG	+	Chr3:93038701-93038720	None:intergenic	55.0%
	GTAGCGTTTGGAAAGGACGG+AGG	+	Chr3:93038779-93038798	None:intergenic	55.0%
	GTTCCCCCACCGCAACAAAA+CGG	-	Chr3:93038652-93038671	MsG0380017178.01.T01:CDS	55.0%
	TCAGCAGCATCCTCTGCAGA+AGG	+	Chr3:93039036-93039055	None:intergenic	55.0%
	TGATAAGGACGCTGCTGCTG+TGG	-	Chr3:93038990-93039009	MsG0380017178.01.T01:CDS	55.0%
	TGGCCATATGCTGAATCCGG+CGG	+	Chr3:93038698-93038717	None:intergenic	55.0%
	TTCCTCGATCTGACGAGCAG+CGG	+	Chr3:93038830-93038849	None:intergenic	55.0%
	TTTGGAAAGGACGGAGGGAG+TGG	+	Chr3:93038773-93038792	None:intergenic	55.0%
!!	GTTTTGTTGCGGTGGGGGAA+CGG	+	Chr3:93038653-93038672	None:intergenic	55.0%
	CCATATGCTGAATCCGGCGG+AGG	+	Chr3:93038695-93038714	None:intergenic	60.0%
	CCTCCGCCGGATTCAGCATA+TGG	-	Chr3:93038692-93038711	MsG0380017178.01.T01:CDS	60.0%
	GCAGCATCCTCTGCAGAAGG+AGG	+	Chr3:93039033-93039052	None:intergenic	60.0%
	GGAGTCACCGGCAACAGAGA+AGG	+	Chr3:93038857-93038876	None:intergenic	60.0%
	GGGCAATGTGCCGTAGCGTT+TGG	+	Chr3:93038791-93038810	None:intergenic	60.0%
	TATGCTGAATCCGGCGGAGG+GGG	+	Chr3:93038692-93038711	None:intergenic	60.0%
!!	GGTCGCCGTTTTGTTGCGGT+GGG	+	Chr3:93038660-93038679	None:intergenic	60.0%
!!	GTCGCCGTTTTGTTGCGGTG+GGG	+	Chr3:93038659-93038678	None:intergenic	60.0%
!!	TCGCCGTTTTGTTGCGGTGG+GGG	+	Chr3:93038658-93038677	None:intergenic	60.0%
!!	TGGTCGCCGTTTTGTTGCGG+TGG	+	Chr3:93038661-93038680	None:intergenic	60.0%
	ATGCTGAATCCGGCGGAGGG+GGG	+	Chr3:93038691-93038710	None:intergenic	65.0%
	CAAACCAAACCCCCCTCCGC+CGG	-	Chr3:93038679-93038698	MsG0380017178.01.T01:CDS	65.0%
	CTCCGCTGCTCGTCAGATCG+AGG	-	Chr3:93038825-93038844	MsG0380017178.01.T01:CDS	65.0%
	CTCGATCTGACGAGCAGCGG+AGG	+	Chr3:93038827-93038846	None:intergenic	65.0%
	GATCTGACGAGCAGCGGAGG+CGG	+	Chr3:93038824-93038843	None:intergenic	65.0%
	TCAATCCCGTCACCACCGCC+AGG	+	Chr3:93038886-93038905	None:intergenic	65.0%
!!	AGCGAGTGATGACGGCGTCG+CGG	+	Chr3:93038735-93038754	None:intergenic	65.0%
	AGCAGCGGAGGCGGCTTCGT+CGG	+	Chr3:93038815-93038834	None:intergenic	70.0%
	CCCGTCACCACCGCCAGGAA+CGG	+	Chr3:93038881-93038900	None:intergenic	70.0%
	CCGTTCCTGGCGGTGGTGAC+GGG	-	Chr3:93038878-93038897	MsG0380017178.01.T01:CDS	70.0%
	GAATCCGGCGGAGGGGGGTT+TGG	+	Chr3:93038686-93038705	None:intergenic	70.0%
	GCCAGGAACGGCGGAGTCAC+CGG	+	Chr3:93038869-93038888	None:intergenic	70.0%
	GCCGTTCCTGGCGGTGGTGA+CGG	-	Chr3:93038877-93038896	MsG0380017178.01.T01:CDS	70.0%
	GGTGACTCCGCCGTTCCTGG+CGG	-	Chr3:93038868-93038887	MsG0380017178.01.T01:CDS	70.0%
	GTCACCACCGCCAGGAACGG+CGG	+	Chr3:93038878-93038897	None:intergenic	70.0%
!	CGGCGGAGGGGGGTTTGGTT+TGG	+	Chr3:93038681-93038700	None:intergenic	70.0%
!!	GCGAGTGATGACGGCGTCGC+GGG	+	Chr3:93038734-93038753	None:intergenic	70.0%
	AGCGGAGGCGGCTTCGTCGG+AGG	+	Chr3:93038812-93038831	None:intergenic	75.0%
	GACGGCGTCGCGGGTGCGTT+GGG	+	Chr3:93038725-93038744	None:intergenic	75.0%
	GACTCCGCCGTTCCTGGCGG+TGG	-	Chr3:93038871-93038890	MsG0380017178.01.T01:CDS	75.0%
	GCCGGTGACTCCGCCGTTCC+TGG	-	Chr3:93038865-93038884	MsG0380017178.01.T01:CDS	75.0%
	GCGGAGGCGGCTTCGTCGGA+GGG	+	Chr3:93038811-93038830	None:intergenic	75.0%
	GCGTCGCGGGTGCGTTGGGT+GGG	+	Chr3:93038721-93038740	None:intergenic	75.0%
	TCGCGGGTGCGTTGGGTGGG+TGG	+	Chr3:93038718-93038737	None:intergenic	75.0%
	TGACGGCGTCGCGGGTGCGT+TGG	+	Chr3:93038726-93038745	None:intergenic	75.0%
!	GGCGTCGCGGGTGCGTTGGG+TGG	+	Chr3:93038722-93038741	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	93038604	93039089	93038604	ID=MsG0380017178.01;Name=MsG0380017178.01
Chr3	mRNA	93038604	93039089	93038604	ID=MsG0380017178.01.T01;Parent=MsG0380017178.01;Name=MsG0380017178.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|161
Chr3	exon	93038604	93039089	93038604	ID=MsG0380017178.01.T01:exon:5354;Parent=MsG0380017178.01.T01
Chr3	CDS	93038604	93039089	93038604	ID=MsG0380017178.01.T01:cds;Parent=MsG0380017178.01.T01

Gene Sequence

>MsG0380017178.01.T01

ATGTCCGACTCAGAAGTCACAACCGTAACCTCATCGGACTCTAACTCCGTTCCCCCACCGCAACAAAACGGCGACCAAACCAAACCCCCCTCCGCCGGATTCAGCATATGGCCACCCACCCAACGCACCCGCGACGCCGTCATCACTCGCTTAATCGAAACCCTAACCACTCCCTCCGTCCTTTCCAAACGCTACGGCACATTGCCCTCCGACGAAGCCGCCTCCGCTGCTCGTCAGATCGAGGAAGATGCCTTCTCTGTTGCCGGTGACTCCGCCGTTCCTGGCGGTGGTGACGGGATTGAGATCCTTCAGGTGTATTCCAAGGAAATCAGTAAGAAGATGCTTGAAACCGTTAAGGCTAGACCTACCGTTGATTCTAGCGCCGTTGATAAGGACGCTGCTGCTGTGGCACCGACCGTTGATGATCCTCCTTCTGCAGAGGATGCTGCTGAATCCGCGAAGATCGAGACGGAGACTGAAACCTGA

Protein sequence

>MsG0380017178.01.T01

MSDSEVTTVTSSDSNSVPPPQQNGDQTKPPSAGFSIWPPTQRTRDAVITRLIETLTTPSVLSKRYGTLPSDEAASAARQIEEDAFSVAGDSAVPGGGDGIEILQVYSKEISKKMLETVKARPTVDSSAVDKDAAAVAPTVDDPPSAEDAAESAKIETETET*