AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040739.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040739.01.T01 MTR_7g096890 98.630 146 2 0 1 146 1 146 9.43e-108 303
MsG0780040739.01.T01 MTR_1g076170 80.272 147 28 1 1 146 1 147 2.52e-79 231
MsG0780040739.01.T01 MTR_4g073590 68.148 135 43 0 11 145 8 142 2.35e-70 208
MsG0780040739.01.T01 MTR_1g068950 61.314 137 53 0 10 146 3 139 1.10e-66 199
MsG0780040739.01.T01 MTR_5g010430 58.571 140 56 1 6 145 1 138 2.00e-64 193
MsG0780040739.01.T01 MTR_2g028670 58.394 137 57 0 10 146 3 139 2.04e-63 191
MsG0780040739.01.T01 MTR_8g098470 59.559 136 53 1 10 145 3 136 1.18e-61 186
MsG0780040739.01.T01 MTR_8g088210 58.088 136 57 0 10 145 3 138 1.90e-61 186
MsG0780040739.01.T01 MTR_8g088210 57.252 131 56 0 15 145 1 131 7.14e-58 176
MsG0780040739.01.T01 MTR_1g101190 59.559 136 53 1 10 145 464 597 1.67e-56 186
MsG0780040739.01.T01 MTR_4g073590 68.889 90 28 0 11 100 8 97 1.60e-44 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040739.01.T01 AT2G31200 77.397 146 33 0 1 146 1 146 1.98e-86 249
MsG0780040739.01.T01 AT3G46010 60.000 145 57 1 3 146 6 150 3.26e-68 203
MsG0780040739.01.T01 AT3G46010 60.584 137 54 0 10 146 3 139 2.04e-67 201
MsG0780040739.01.T01 AT5G59890 60.584 137 54 0 10 146 3 139 2.15e-67 201
MsG0780040739.01.T01 AT4G34970 62.857 140 52 0 6 145 1 140 2.68e-66 198
MsG0780040739.01.T01 AT2G16700 62.222 135 51 0 11 145 8 142 4.76e-64 192
MsG0780040739.01.T01 AT4G25590 61.765 136 50 1 10 145 3 136 5.38e-64 192
MsG0780040739.01.T01 AT5G59890 59.848 132 53 0 15 146 1 132 8.46e-64 191
MsG0780040739.01.T01 AT5G59890 59.848 132 53 0 15 146 1 132 8.46e-64 191
MsG0780040739.01.T01 AT4G00680 56.115 139 61 0 8 146 11 149 1.29e-63 191
MsG0780040739.01.T01 AT4G00680 56.934 137 59 0 10 146 3 139 1.52e-63 191
MsG0780040739.01.T01 AT1G01750 56.835 139 60 0 8 146 6 144 1.66e-63 191
MsG0780040739.01.T01 AT1G01750 57.664 137 58 0 10 146 3 139 1.92e-63 191
MsG0780040739.01.T01 AT3G46000 61.314 137 51 1 10 146 3 137 2.12e-63 191
MsG0780040739.01.T01 AT3G46000 61.314 137 51 1 10 146 22 156 2.39e-63 191
MsG0780040739.01.T01 AT5G59880 56.934 137 59 0 10 146 3 139 6.68e-63 189
MsG0780040739.01.T01 AT2G16700 62.595 131 49 0 15 145 1 131 7.64e-62 186
MsG0780040739.01.T01 AT2G16700 62.595 131 49 0 15 145 1 131 7.64e-62 186
MsG0780040739.01.T01 AT5G52360 60.294 136 52 1 10 145 3 136 2.83e-61 185
MsG0780040739.01.T01 AT4G25590 61.069 131 49 1 15 145 1 129 1.59e-60 183
MsG0780040739.01.T01 AT3G46000 60.606 132 50 1 15 146 1 130 6.46e-60 181
MsG0780040739.01.T01 AT5G59880 51.095 137 52 1 10 146 3 124 1.00e-50 158
MsG0780040739.01.T01 AT2G16700 55.882 102 45 0 11 112 8 109 5.08e-38 125
MsG0780040739.01.T01 AT3G45990 44.853 136 64 3 15 144 1 131 7.52e-37 123

Find 51 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCGTTATGTCATCTTTA+AGG 0.168659 7:-81815308 MsG0780040739.01.T01:CDS
AATGGTGAATTTGAGGATTA+TGG 0.205087 7:+81815588 None:intergenic
AATTTGAGGATTATGGAAAA+TGG 0.271316 7:+81815595 None:intergenic
TACCTCCAATATTATGAATC+TGG 0.285933 7:-81812251 MsG0780040739.01.T01:three_prime_UTR
TAAACCCAGATTCATAATAT+TGG 0.286399 7:+81812246 None:intergenic
TTTCTGTGGGGTCAGTAGCC+TGG 0.377595 7:+81812395 None:intergenic
GGCTACTGACCCCACAGAAA+TGG 0.409200 7:-81812392 MsG0780040739.01.T01:CDS
TTAAGGTTGATGAAAAGAAA+AGG 0.433478 7:-81815291 MsG0780040739.01.T01:CDS
GCACGGATTCGAGACGTTGA+AGG 0.442019 7:+81812484 None:intergenic
TAAGGTTGATGAAAAGAAAA+GGG 0.442046 7:-81815290 MsG0780040739.01.T01:CDS
CAGTAGCCTGGATTTCATAA+TGG 0.449862 7:+81812407 None:intergenic
GGATGAAAATGGTGAATTTG+AGG 0.455784 7:+81815581 None:intergenic
AATGTATGAAGGGATGAAAA+TGG 0.473092 7:+81815570 None:intergenic
CCCATGCCGGATGAAGCATT+TGG 0.475896 7:+81815382 None:intergenic
ACCTCCAATATTATGAATCT+GGG 0.476955 7:-81812250 MsG0780040739.01.T01:three_prime_UTR
AGTTGTGGCATAGAGCATCT+TGG 0.477388 7:+81812462 None:intergenic
AGGTTTAGACGTGAGCTAGA+TGG 0.488623 7:-81812433 MsG0780040739.01.T01:CDS
TGGTGTCCATTATGAAATCC+AGG 0.494209 7:-81812413 MsG0780040739.01.T01:CDS
GCAAAATCTTCTTCATTGCA+TGG 0.494327 7:-81815138 MsG0780040739.01.T01:intron
TCTAAACCTTTCTTTAGTTG+TGG 0.494754 7:+81812447 None:intergenic
GCATATCTGCAATCATTCTC+AGG 0.507662 7:+81815205 None:intergenic
GAGGTTGTGGTTGAGAAGAC+TGG 0.525287 7:-81815268 MsG0780040739.01.T01:CDS
TGTCTTTCAGAGGTCTCAGC+CGG 0.525354 7:-81815542 MsG0780040739.01.T01:CDS
GCCAAATGCTTCATCCGGCA+TGG 0.525975 7:-81815383 MsG0780040739.01.T01:CDS
CCAAATGCTTCATCCGGCAT+GGG 0.527181 7:-81815382 MsG0780040739.01.T01:CDS
TTACAGCCAAATGCTTCATC+CGG 0.531942 7:-81815388 MsG0780040739.01.T01:intron
TACAATACATTCAAGCAGAC+TGG 0.534843 7:+81812196 None:intergenic
AAGACATGGAAAATGTATGA+AGG 0.535116 7:+81815559 None:intergenic
ACTTCAAGATCCATTTCTGT+GGG 0.536095 7:+81812382 None:intergenic
CATTGTCATATCAGTGTGCT+CGG 0.541300 7:+81812350 None:intergenic
ACCCAGATTCATAATATTGG+AGG 0.543626 7:+81812249 None:intergenic
AAATCGTCATAACTCTCAGC+AGG 0.549468 7:+81815241 None:intergenic
CATGGAATTGAAGCAAAAGA+AGG 0.552935 7:-81815332 MsG0780040739.01.T01:CDS
CACTTCAAGATCCATTTCTG+TGG 0.558716 7:+81812381 None:intergenic
TCTATGCCACAACTAAAGAA+AGG 0.562569 7:-81812453 MsG0780040739.01.T01:CDS
GTATTATAGACACATTGGAT+TGG 0.564881 7:+81815630 None:intergenic
GTTCTCATCAACGCCCATGC+CGG 0.566660 7:+81815369 None:intergenic
AACTAGTATTATAGACACAT+TGG 0.567118 7:+81815625 None:intergenic
GTCTTTCAGAGGTCTCAGCC+GGG 0.578693 7:-81815541 MsG0780040739.01.T01:intron
AAATGGATCTTGAAGTGCTG+AGG 0.581724 7:-81812375 MsG0780040739.01.T01:CDS
AGACATGGAAAATGTATGAA+GGG 0.601764 7:+81815560 None:intergenic
AATGGATCTTGAAGTGCTGA+GGG 0.603005 7:-81812374 MsG0780040739.01.T01:CDS
AGTCATCAGATTAATAACAA+AGG 0.605500 7:+81812129 None:intergenic
TGAAAAGAAAAGGGAGGTTG+TGG 0.608416 7:-81815281 MsG0780040739.01.T01:CDS
TGGCATAGAGCATCTTGGCA+CGG 0.613003 7:+81812467 None:intergenic
GCTGAGACCTCTGAAAGACA+TGG 0.632319 7:+81815545 None:intergenic
GGTTGATGAAAAGAAAAGGG+AGG 0.632508 7:-81815287 MsG0780040739.01.T01:CDS
ATCATTCTCAGGCAAAGACG+CGG 0.642351 7:+81815216 None:intergenic
CCTTAAAGATGACATAACGA+TGG 0.655901 7:+81815308 None:intergenic
GTTGTGGTTGAGAAGACTGG+TGG 0.675505 7:-81815265 MsG0780040739.01.T01:CDS
CTTCAAGATCCATTTCTGTG+GGG 0.730380 7:+81812383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAAAAAAATATAAA+CGG + Chr7:81813000-81813019 None:intergenic 0.0%
!! AATAATTAAAACATGTTATT+AGG + Chr7:81815034-81815053 None:intergenic 10.0%
!! TGATAAATTAATGTTTAAAA+TGG - Chr7:81814395-81814414 MsG0780040739.01.T01:intron 10.0%
!!! AAATTTTGTAAGAATAAATA+TGG - Chr7:81814869-81814888 MsG0780040739.01.T01:intron 10.0%
!!! AATTTAATGTTTAAAATGTT+TGG + Chr7:81814270-81814289 None:intergenic 10.0%
!!! ATAAATTAATGTTTAAAATG+GGG - Chr7:81814397-81814416 MsG0780040739.01.T01:intron 10.0%
!!! ATTTAATGTTTAAAATGTTT+GGG + Chr7:81814269-81814288 None:intergenic 10.0%
!!! GATAAATTAATGTTTAAAAT+GGG - Chr7:81814396-81814415 MsG0780040739.01.T01:intron 10.0%
!! AAATGATATAAATTAATCTG+AGG + Chr7:81812260-81812279 None:intergenic 15.0%
!! TGAAAATTCATATAAATGAT+AGG + Chr7:81815058-81815077 None:intergenic 15.0%
!!! ATTTTAAACATTAAATTCCA+GGG - Chr7:81814273-81814292 MsG0780040739.01.T01:intron 15.0%
!!! GTTATTTATCTGATTTTTTT+CGG - Chr7:81814468-81814487 MsG0780040739.01.T01:intron 15.0%
!!! TAAATTAATGTTTAAAATGG+GGG - Chr7:81814398-81814417 MsG0780040739.01.T01:intron 15.0%
!!! TTTTAATAATCAAAGTACAA+GGG - Chr7:81813012-81813031 MsG0780040739.01.T01:intron 15.0%
!!! TTTTTAATAATCAAAGTACA+AGG - Chr7:81813011-81813030 MsG0780040739.01.T01:intron 15.0%
!! AGATATTAATTCAGTAATAG+AGG + Chr7:81814070-81814089 None:intergenic 20.0%
!! ATATTAATTCAGTAATAGAG+GGG + Chr7:81814068-81814087 None:intergenic 20.0%
!! CAGATAAATAACTTCTAATA+TGG + Chr7:81814460-81814479 None:intergenic 20.0%
!! GATATTAATTCAGTAATAGA+GGG + Chr7:81814069-81814088 None:intergenic 20.0%
!! TAATGAATTAGATCAAATGA+AGG + Chr7:81812221-81812240 None:intergenic 20.0%
!! TGAAACTTAAATAAATAGCT+CGG + Chr7:81813617-81813636 None:intergenic 20.0%
!! TGAAACTTAAATAAATAGCT+TGG + Chr7:81813617-81813636 None:intergenic 20.0%
!! TTACTGAATTAATATCTAGT+TGG - Chr7:81814073-81814092 MsG0780040739.01.T01:intron 20.0%
!! TTTAATAATCAAAGTACAAG+GGG - Chr7:81813013-81813032 MsG0780040739.01.T01:intron 20.0%
!!! ACAAAATTTTATGAAAAGCA+AGG + Chr7:81814858-81814877 None:intergenic 20.0%
!!! ATTGATTTTTACGAAAAGAA+TGG + Chr7:81814583-81814602 None:intergenic 20.0%
!!! CATTTTAAACATTAAATTCC+AGG - Chr7:81814272-81814291 MsG0780040739.01.T01:intron 20.0%
!!! TTTCTTTTTAGAATGAGAAA+TGG + Chr7:81813867-81813886 None:intergenic 20.0%
!!! TTTTAAACATTAAATTCCAG+GGG - Chr7:81814274-81814293 MsG0780040739.01.T01:intron 20.0%
!!! TTTTCGTAAAAATCAATTTG+AGG - Chr7:81814586-81814605 MsG0780040739.01.T01:intron 20.0%
! AAATCTTTGTGTGATAGTAT+TGG - Chr7:81814613-81814632 MsG0780040739.01.T01:intron 25.0%
! AACTAGTATTATAGACACAT+TGG + Chr7:81812085-81812104 None:intergenic 25.0%
! AACTTAAATAAATAGCTTGG+AGG + Chr7:81813614-81813633 None:intergenic 25.0%
! AATTTGAGGATTATGGAAAA+TGG + Chr7:81812115-81812134 None:intergenic 25.0%
! ACTTTGACTAATTGTAACTT+TGG - Chr7:81814513-81814532 MsG0780040739.01.T01:intron 25.0%
! AGAGAATAGAATTTCATAAC+AGG - Chr7:81813215-81813234 MsG0780040739.01.T01:intron 25.0%
! AGCAAAAACATGAATCTTAA+CGG - Chr7:81813490-81813509 MsG0780040739.01.T01:intron 25.0%
! AGTCATCAGATTAATAACAA+AGG + Chr7:81815581-81815600 None:intergenic 25.0%
! ATAATTTAGTGTCCTTACAT+AGG - Chr7:81814736-81814755 MsG0780040739.01.T01:intron 25.0%
! ATGAAATTCTATTCTCTTTC+AGG + Chr7:81813212-81813231 None:intergenic 25.0%
! ATTAATTACATAAAGTGACG+AGG + Chr7:81812612-81812631 None:intergenic 25.0%
! TAAAACATGTTATTAGGAAG+TGG + Chr7:81815028-81815047 None:intergenic 25.0%
! TAAACCCAGATTCATAATAT+TGG + Chr7:81815464-81815483 None:intergenic 25.0%
! TAATCAATAACAAGCAATGA+AGG + Chr7:81815198-81815217 None:intergenic 25.0%
! TTAGGTTATCTTATTCTGAT+TGG + Chr7:81813105-81813124 None:intergenic 25.0%
! TTCAAAATTCTGATTAGTGT+AGG - Chr7:81814711-81814730 MsG0780040739.01.T01:intron 25.0%
!! ACACTAATCAGAATTTTGAA+GGG + Chr7:81814711-81814730 None:intergenic 25.0%
!! TACAATCAACATATCTTTTG+CGG - Chr7:81812751-81812770 MsG0780040739.01.T01:intron 25.0%
!! TACACTAATCAGAATTTTGA+AGG + Chr7:81814712-81814731 None:intergenic 25.0%
!! TGTATGAGCATATGATTTTA+TGG - Chr7:81815530-81815549 MsG0780040739.01.T01:intron 25.0%
!! TGTCTTTAAATAAGGCATTT+CGG + Chr7:81813540-81813559 None:intergenic 25.0%
!!! AATGAACATTTTTTGCAACA+TGG + Chr7:81813313-81813332 None:intergenic 25.0%
!!! ATGAACATTTTTTGCAACAT+GGG + Chr7:81813312-81813331 None:intergenic 25.0%
!!! TAAATTGTTTTAGTACTCTG+TGG - Chr7:81814912-81814931 MsG0780040739.01.T01:intron 25.0%
!!! TAAGGTTGATGAAAAGAAAA+GGG - Chr7:81812417-81812436 MsG0780040739.01.T01:CDS 25.0%
!!! TTAAGATTCATGTTTTTGCT+TGG + Chr7:81813490-81813509 None:intergenic 25.0%
!!! TTAAGGTTGATGAAAAGAAA+AGG - Chr7:81812416-81812435 MsG0780040739.01.T01:CDS 25.0%
!!! TTCATTGCTTGTTATTGATT+AGG - Chr7:81815197-81815216 MsG0780040739.01.T01:CDS 25.0%
AAGACACATGATAATTGCTA+AGG - Chr7:81813451-81813470 MsG0780040739.01.T01:intron 30.0%
AAGACATGGAAAATGTATGA+AGG + Chr7:81812151-81812170 None:intergenic 30.0%
AAGATATACCGTTAAGATTC+AGG + Chr7:81814131-81814150 None:intergenic 30.0%
AATGGTGAATTTGAGGATTA+TGG + Chr7:81812122-81812141 None:intergenic 30.0%
AATGTATGAAGGGATGAAAA+TGG + Chr7:81812140-81812159 None:intergenic 30.0%
AATTCTATTCTCTTTCAGGA+TGG + Chr7:81813208-81813227 None:intergenic 30.0%
ACCTCCAATATTATGAATCT+GGG - Chr7:81815457-81815476 MsG0780040739.01.T01:intron 30.0%
ACTTAAATAAATAGCTCGGA+TGG + Chr7:81814240-81814259 None:intergenic 30.0%
AGACATGGAAAATGTATGAA+GGG + Chr7:81812150-81812169 None:intergenic 30.0%
AGATATACCGTTAAGATTCA+GGG + Chr7:81814130-81814149 None:intergenic 30.0%
AGCATCATGAGAATAATGTT+TGG + Chr7:81813643-81813662 None:intergenic 30.0%
ATTCTATTCTCTTTCAGGAT+GGG + Chr7:81813207-81813226 None:intergenic 30.0%
CTCAAATTAATTGCATAGCA+TGG + Chr7:81812788-81812807 None:intergenic 30.0%
GTCTATTGTTTCATTGTCTT+GGG - Chr7:81812857-81812876 MsG0780040739.01.T01:intron 30.0%
GTGTGGTAATTCCTTAATAA+GGG + Chr7:81813845-81813864 None:intergenic 30.0%
TACCTCCAATATTATGAATC+TGG - Chr7:81815456-81815475 MsG0780040739.01.T01:intron 30.0%
TCCGAAAACATTAAATTCCT+GGG + Chr7:81814374-81814393 None:intergenic 30.0%
TCTAAACCTTTCTTTAGTTG+TGG + Chr7:81815263-81815282 None:intergenic 30.0%
TGATAATTGCTAAGGATTTG+AGG - Chr7:81813459-81813478 MsG0780040739.01.T01:intron 30.0%
TGGAAACAAATCCCTTATTA+AGG - Chr7:81813831-81813850 MsG0780040739.01.T01:intron 30.0%
TGTCTATTGTTTCATTGTCT+TGG - Chr7:81812856-81812875 MsG0780040739.01.T01:intron 30.0%
! AAATAGCTTGGAGGAATTTT+CGG + Chr7:81813605-81813624 None:intergenic 30.0%
! AACAGAAGCGTAAAAATTTC+AGG + Chr7:81814434-81814453 None:intergenic 30.0%
! ACAGAAGCGTAAAAATTTCA+GGG + Chr7:81814433-81814452 None:intergenic 30.0%
! AGATTGGCTGTCTTTAAATA+AGG + Chr7:81813548-81813567 None:intergenic 30.0%
! AGGTACATTTTTGCAGAAAA+TGG + Chr7:81815441-81815460 None:intergenic 30.0%
! AGTTAGTTTATACGAAAAGC+GGG + Chr7:81813136-81813155 None:intergenic 30.0%
! CTTCAAATAAAGCATTTCAG+AGG + Chr7:81814164-81814183 None:intergenic 30.0%
! GAGTTAGTTTATACGAAAAG+CGG + Chr7:81813137-81813156 None:intergenic 30.0%
! GCATATGATTTTATGGATCA+AGG - Chr7:81815537-81815556 MsG0780040739.01.T01:intron 30.0%
! GGTACATTTTTGCAGAAAAT+GGG + Chr7:81815440-81815459 None:intergenic 30.0%
!! ATGTTGGTTAGTCTTTGTAA+TGG - Chr7:81814783-81814802 MsG0780040739.01.T01:intron 30.0%
!! TAATCAGAATTTTGAAGGGA+GGG + Chr7:81814707-81814726 None:intergenic 30.0%
!!! AACATGGGAGTTTTTTTTAG+AGG + Chr7:81813297-81813316 None:intergenic 30.0%
!!! TATCTGATTTTTTTCGGACA+GGG - Chr7:81814474-81814493 MsG0780040739.01.T01:intron 30.0%
!!! TTATCTGATTTTTTTCGGAC+AGG - Chr7:81814473-81814492 MsG0780040739.01.T01:intron 30.0%
!!! TTTTAGAATGAGAAATGGTG+TGG + Chr7:81813862-81813881 None:intergenic 30.0%
AAAATGTTCATTACCGTCAC+TGG - Chr7:81813321-81813340 MsG0780040739.01.T01:intron 35.0%
AAGTAACCAAAACAACCCAA+CGG - Chr7:81813072-81813091 MsG0780040739.01.T01:intron 35.0%
AATGTTCGGTCCATCAATTA+TGG + Chr7:81813953-81813972 None:intergenic 35.0%
AATTACATAAAGTGACGAGG+CGG + Chr7:81812609-81812628 None:intergenic 35.0%
ACCCAGATTCATAATATTGG+AGG + Chr7:81815461-81815480 None:intergenic 35.0%
ACTTCAAGATCCATTTCTGT+GGG + Chr7:81815328-81815347 None:intergenic 35.0%
AGCAAAACCCTGAATCTTAA+CGG - Chr7:81814120-81814139 MsG0780040739.01.T01:intron 35.0%
ATCACAAGACACATGATAAC+CGG - Chr7:81814026-81814045 MsG0780040739.01.T01:intron 35.0%
ATTATGGTATGGTTGTCGTT+TGG + Chr7:81813937-81813956 None:intergenic 35.0%
ATTGGACAATAATGCTGCAA+CGG - Chr7:81814631-81814650 MsG0780040739.01.T01:intron 35.0%
ATTGGCAATTGAAGAGATAG+TGG + Chr7:81813738-81813757 None:intergenic 35.0%
ATTTGAGCAAGGTGAACATT+TGG + Chr7:81813269-81813288 None:intergenic 35.0%
ATTTGAGCTCTTCAAGAGAT+TGG + Chr7:81813564-81813583 None:intergenic 35.0%
CATGGAATTGAAGCAAAAGA+AGG - Chr7:81812375-81812394 MsG0780040739.01.T01:CDS 35.0%
CCAAAATACAGGTAATGTCT+TGG + Chr7:81813159-81813178 None:intergenic 35.0%
CCATCGTTATGTCATCTTTA+AGG - Chr7:81812399-81812418 MsG0780040739.01.T01:CDS 35.0%
CCTTAAAGATGACATAACGA+TGG + Chr7:81812402-81812421 None:intergenic 35.0%
GACAACCATACCATAATTGA+TGG - Chr7:81813940-81813959 MsG0780040739.01.T01:intron 35.0%
GCAAAATCTTCTTCATTGCA+TGG - Chr7:81812569-81812588 MsG0780040739.01.T01:intron 35.0%
GCTTTCACTGTATTATGAAC+TGG + Chr7:81813043-81813062 None:intergenic 35.0%
GGATGAAAATGGTGAATTTG+AGG + Chr7:81812129-81812148 None:intergenic 35.0%
GGGAAATGAGTACAAGAATA+AGG - Chr7:81813995-81814014 MsG0780040739.01.T01:intron 35.0%
GGGTAATTTCTAAACCTTAC+CGG + Chr7:81814048-81814067 None:intergenic 35.0%
GGTGTGGTAATTCCTTAATA+AGG + Chr7:81813846-81813865 None:intergenic 35.0%
GTCCGAAAACATTAAATTCC+TGG + Chr7:81814375-81814394 None:intergenic 35.0%
TAATCAGAGAAGTCTTTCTG+TGG + Chr7:81814963-81814982 None:intergenic 35.0%
TACAATACATTCAAGCAGAC+TGG + Chr7:81815514-81815533 None:intergenic 35.0%
TCTATGCCACAACTAAAGAA+AGG - Chr7:81815254-81815273 MsG0780040739.01.T01:CDS 35.0%
TCTGGAAAAAGAGTTGTTAG+GGG + Chr7:81813695-81813714 None:intergenic 35.0%
! ACATTTTCCATGTCTTTCAG+AGG - Chr7:81812155-81812174 MsG0780040739.01.T01:three_prime_UTR 35.0%
! ATAAAGCATTTCAGAGGTAG+TGG + Chr7:81814158-81814177 None:intergenic 35.0%
! ATCTAATCAGCGATCCATTT+TGG - Chr7:81813774-81813793 MsG0780040739.01.T01:intron 35.0%
! CCAAGACATTACCTGTATTT+TGG - Chr7:81813156-81813175 MsG0780040739.01.T01:intron 35.0%
! CTCTGGAAAAAGAGTTGTTA+GGG + Chr7:81813696-81813715 None:intergenic 35.0%
! CTTTTCATGAGTATTCTGTC+AGG + Chr7:81814321-81814340 None:intergenic 35.0%
! CTTTTGCTTCAATTCCATGA+AGG + Chr7:81812374-81812393 None:intergenic 35.0%
! GCCCAGGAATTTAATGTTTT+CGG - Chr7:81814370-81814389 MsG0780040739.01.T01:intron 35.0%
! TCCATCATTTATGGTTGGTT+GGG + Chr7:81813364-81813383 None:intergenic 35.0%
! TTAAGATTCAGGGTTTTGCT+TGG + Chr7:81814120-81814139 None:intergenic 35.0%
!! AAATAGCTCGGATGGATTTT+CGG + Chr7:81814232-81814251 None:intergenic 35.0%
!! AGATTCATGTTTTTGCTTGG+AGG + Chr7:81813487-81813506 None:intergenic 35.0%
!! CTAATCAGAATTTTGAAGGG+AGG + Chr7:81814708-81814727 None:intergenic 35.0%
!! GTCGTTTGGTTCTTTGAAAA+GGG + Chr7:81813923-81813942 None:intergenic 35.0%
!! TCGTTTGGTTCTTTGAAAAG+GGG + Chr7:81813922-81813941 None:intergenic 35.0%
!! TGTCGTTTGGTTCTTTGAAA+AGG + Chr7:81813924-81813943 None:intergenic 35.0%
AAATCGTCATAACTCTCAGC+AGG + Chr7:81812469-81812488 None:intergenic 40.0%
AAGACACATGATAACCGGTA+AGG - Chr7:81814031-81814050 MsG0780040739.01.T01:intron 40.0%
AATGCTCGGTCCATCATTTA+TGG + Chr7:81813373-81813392 None:intergenic 40.0%
ACAAGAGGAGTAAGACAACT+CGG + Chr7:81815096-81815115 None:intergenic 40.0%
ACCCAACCAACCATAAATGA+TGG - Chr7:81813360-81813379 MsG0780040739.01.T01:intron 40.0%
AGCAAGGTGAACATTTGGTA+TGG + Chr7:81813264-81813283 None:intergenic 40.0%
AGGTTTGTGTGAACAGAGAT+GGG + Chr7:81813807-81813826 None:intergenic 40.0%
ATGACGTTTGGATGTGGAAT+TGG + Chr7:81813756-81813775 None:intergenic 40.0%
CACTTCAAGATCCATTTCTG+TGG + Chr7:81815329-81815348 None:intergenic 40.0%
CAGTAGCCTGGATTTCATAA+TGG + Chr7:81815303-81815322 None:intergenic 40.0%
CATTGTCATATCAGTGTGCT+CGG + Chr7:81815360-81815379 None:intergenic 40.0%
CTTCAAGATCCATTTCTGTG+GGG + Chr7:81815327-81815346 None:intergenic 40.0%
GAAAGCTTGACTAGCAATTC+TGG + Chr7:81814828-81814847 None:intergenic 40.0%
GAACAGCAAAAACACCTTCA+TGG - Chr7:81812357-81812376 MsG0780040739.01.T01:exon 40.0%
GAGAGATGAGTGCAAGAATA+AGG - Chr7:81813415-81813434 MsG0780040739.01.T01:intron 40.0%
GAGGAAATCATTGTTTGCTC+TGG + Chr7:81813713-81813732 None:intergenic 40.0%
GATTAGATGACGTTTGGATG+TGG + Chr7:81813762-81813781 None:intergenic 40.0%
GCATATCTGCAATCATTCTC+AGG + Chr7:81812505-81812524 None:intergenic 40.0%
GTCCATCATTTATGGTTGGT+TGG + Chr7:81813365-81813384 None:intergenic 40.0%
TACTCCTCTTGTTCTTGTGA+AGG - Chr7:81815104-81815123 MsG0780040739.01.T01:intron 40.0%
TAGAGGAATGCATTTGAGCA+AGG + Chr7:81813280-81813299 None:intergenic 40.0%
TAGTTTATACGAAAAGCGGG+TGG + Chr7:81813133-81813152 None:intergenic 40.0%
TATTCTCTTTCAGGATGGGT+TGG + Chr7:81813203-81813222 None:intergenic 40.0%
TCGGTCCATCAATTATGGTA+TGG + Chr7:81813948-81813967 None:intergenic 40.0%
TCTTGTGCAAGTGAATTCTG+TGG - Chr7:81812707-81812726 MsG0780040739.01.T01:intron 40.0%
TGAAAAGAAAAGGGAGGTTG+TGG - Chr7:81812426-81812445 MsG0780040739.01.T01:CDS 40.0%
TGGGTTCTCAATGGAAATGT+TGG - Chr7:81814767-81814786 MsG0780040739.01.T01:intron 40.0%
TGGTGTCCATTATGAAATCC+AGG - Chr7:81815294-81815313 MsG0780040739.01.T01:CDS 40.0%
TGTGAAGGACAAACTTGTGT+TGG - Chr7:81815119-81815138 MsG0780040739.01.T01:intron 40.0%
TTACAGCCAAATGCTTCATC+CGG - Chr7:81812319-81812338 MsG0780040739.01.T01:three_prime_UTR 40.0%
TTATGTCACACTAATACCCC+TGG + Chr7:81814293-81814312 None:intergenic 40.0%
TTCCATTGAGAACCCATCAT+CGG + Chr7:81814763-81814782 None:intergenic 40.0%
TTGGACAATAATGCTGCAAC+GGG - Chr7:81814632-81814651 MsG0780040739.01.T01:intron 40.0%
TTGTCCTTCACAAGAACAAG+AGG + Chr7:81815111-81815130 None:intergenic 40.0%
TTTGAAAAGGGGTAAGCAGA+AGG + Chr7:81813911-81813930 None:intergenic 40.0%
! AAGGGATTTGTTTCCACTTC+AGG + Chr7:81813827-81813846 None:intergenic 40.0%
! ATAAGGCATTTCGGAGATTC+TGG + Chr7:81813531-81813550 None:intergenic 40.0%
! ATCGCTGATTAGATGACGTT+TGG + Chr7:81813768-81813787 None:intergenic 40.0%
!! AAAGTTGATGTCTGACAGCA+AGG - Chr7:81814337-81814356 MsG0780040739.01.T01:intron 40.0%
!! AAATGGATCTTGAAGTGCTG+AGG - Chr7:81815332-81815351 MsG0780040739.01.T01:CDS 40.0%
!! AAGTTGATGTCTGACAGCAA+GGG - Chr7:81814338-81814357 MsG0780040739.01.T01:intron 40.0%
!! AATGGATCTTGAAGTGCTGA+GGG - Chr7:81815333-81815352 MsG0780040739.01.T01:CDS 40.0%
!! AATTTTGAAGGGAGGGAACA+AGG + Chr7:81814700-81814719 None:intergenic 40.0%
!! GCTCTGGAAAAAGAGTTGTT+AGG + Chr7:81813697-81813716 None:intergenic 40.0%
!! GGTTGATGAAAAGAAAAGGG+AGG - Chr7:81812420-81812439 MsG0780040739.01.T01:CDS 40.0%
!! TATGGTTGGTTGGGTTTTCA+AGG + Chr7:81813355-81813374 None:intergenic 40.0%
!! TGTAGAGTGTTGAAGTTACC+CGG + Chr7:81812187-81812206 None:intergenic 40.0%
AGATGGGTGTGTAGCCAAAA+TGG + Chr7:81813791-81813810 None:intergenic 45.0%
AGGGGATATGCAGTTGTTGT+GGG + Chr7:81813677-81813696 None:intergenic 45.0%
AGGTGAACATTTGGTATGGC+TGG + Chr7:81813260-81813279 None:intergenic 45.0%
AGGTTTAGACGTGAGCTAGA+TGG - Chr7:81815274-81815293 MsG0780040739.01.T01:CDS 45.0%
ATATGCAGTTGTTGTGGGAG+TGG + Chr7:81813672-81813691 None:intergenic 45.0%
ATCATTCTCAGGCAAAGACG+CGG + Chr7:81812494-81812513 None:intergenic 45.0%
CAACTCGGAGTACGACATTA+AGG + Chr7:81815081-81815100 None:intergenic 45.0%
CAGGTTTGTGTGAACAGAGA+TGG + Chr7:81813808-81813827 None:intergenic 45.0%
CCTTACATAGGACCGATGAT+GGG - Chr7:81814748-81814767 MsG0780040739.01.T01:intron 45.0%
CTCGGTCCATCATTTATGGT+TGG + Chr7:81813369-81813388 None:intergenic 45.0%
CTGTTCACACAAACCTGAAG+TGG - Chr7:81813811-81813830 MsG0780040739.01.T01:intron 45.0%
GAAAAGCGGGTGGAAATGTT+AGG + Chr7:81813123-81813142 None:intergenic 45.0%
GAACAAGGTCAGTCGAAAAC+TGG + Chr7:81814685-81814704 None:intergenic 45.0%
GAGCAAAGGGGCAAGAAAAA+GGG - Chr7:81813975-81813994 MsG0780040739.01.T01:intron 45.0%
TAGGGGATATGCAGTTGTTG+TGG + Chr7:81813678-81813697 None:intergenic 45.0%
TAGTTGGCAAATGACCTCGT+AGG - Chr7:81814089-81814108 MsG0780040739.01.T01:intron 45.0%
TCAGTCGAAAACTGGAGAGA+CGG + Chr7:81814677-81814696 None:intergenic 45.0%
TCCTTACATAGGACCGATGA+TGG - Chr7:81814747-81814766 MsG0780040739.01.T01:intron 45.0%
TCTGCGATGTTTGGAAGACA+AGG - Chr7:81812668-81812687 MsG0780040739.01.T01:intron 45.0%
TGGACAATAATGCTGCAACG+GGG - Chr7:81814633-81814652 MsG0780040739.01.T01:intron 45.0%
TGTTTGCGATCTGCGATGTT+TGG - Chr7:81812659-81812678 MsG0780040739.01.T01:intron 45.0%
! AATTGAAGAGATAGTGGCGG+AGG + Chr7:81813732-81813751 None:intergenic 45.0%
! AGATTCAGGGTTTTGCTTGG+AGG + Chr7:81814117-81814136 None:intergenic 45.0%
! AGTTGATGTCTGACAGCAAG+GGG - Chr7:81814339-81814358 MsG0780040739.01.T01:intron 45.0%
! AGTTGTGGCATAGAGCATCT+TGG + Chr7:81815248-81815267 None:intergenic 45.0%
! GGCAATTGAAGAGATAGTGG+CGG + Chr7:81813735-81813754 None:intergenic 45.0%
! TTTCGGAGATTCTGGTTACG+TGG + Chr7:81813523-81813542 None:intergenic 45.0%
!!! CAAGGCACTTTTTCCAGTGA+CGG + Chr7:81813337-81813356 None:intergenic 45.0%
!!! TACCTGTATTTTGGCCTCCA+AGG - Chr7:81813165-81813184 MsG0780040739.01.T01:intron 45.0%
!!! TTTTTTCGGACAGGGTGTGT+TGG - Chr7:81814482-81814501 MsG0780040739.01.T01:intron 45.0%
!!! ATTTAATGTTTAAAATATTT+AGG - Chr7:81814537-81814556 MsG0780040739.01.T01:intron 5.0%
AAAACTGGAGAGACGGAGAG+AGG + Chr7:81814670-81814689 None:intergenic 50.0%
AAACTGGAGAGACGGAGAGA+GGG + Chr7:81814669-81814688 None:intergenic 50.0%
AAGGGGTAAGCAGAAGGTTG+AGG + Chr7:81813905-81813924 None:intergenic 50.0%
ACATAAAGTGACGAGGCGGA+AGG + Chr7:81812605-81812624 None:intergenic 50.0%
ACCGAACATTGCGAGCAAAG+GGG - Chr7:81813963-81813982 MsG0780040739.01.T01:intron 50.0%
AGGGGTAAGCAGAAGGTTGA+GGG + Chr7:81813904-81813923 None:intergenic 50.0%
CATAAAGTGACGAGGCGGAA+GGG + Chr7:81812604-81812623 None:intergenic 50.0%
CCAAATGCTTCATCCGGCAT+GGG - Chr7:81812325-81812344 MsG0780040739.01.T01:three_prime_UTR 50.0%
CCCATCATCGGTCCTATGTA+AGG + Chr7:81814751-81814770 None:intergenic 50.0%
CGAGCAAAGGGGCAAGAAAA+AGG - Chr7:81813974-81813993 MsG0780040739.01.T01:intron 50.0%
GACCGAACATTGCGAGCAAA+GGG - Chr7:81813962-81813981 MsG0780040739.01.T01:intron 50.0%
GAGGTTGTGGTTGAGAAGAC+TGG - Chr7:81812439-81812458 MsG0780040739.01.T01:CDS 50.0%
GGACAATAATGCTGCAACGG+GGG - Chr7:81814634-81814653 MsG0780040739.01.T01:intron 50.0%
GTTGTGGTTGAGAAGACTGG+TGG - Chr7:81812442-81812461 MsG0780040739.01.T01:CDS 50.0%
TGCCTTGGAGGCCAAAATAC+AGG + Chr7:81813170-81813189 None:intergenic 50.0%
TGTCTTTCAGAGGTCTCAGC+CGG - Chr7:81812165-81812184 MsG0780040739.01.T01:three_prime_UTR 50.0%
! ACCGAGCATTGCGAACAAAG+GGG - Chr7:81813383-81813402 MsG0780040739.01.T01:intron 50.0%
! GACCGAGCATTGCGAACAAA+GGG - Chr7:81813382-81813401 MsG0780040739.01.T01:intron 50.0%
! GCTGAGACCTCTGAAAGACA+TGG + Chr7:81812165-81812184 None:intergenic 50.0%
! TGGCATAGAGCATCTTGGCA+CGG + Chr7:81815243-81815262 None:intergenic 50.0%
!! GACCGATGATGGGTTCTCAA+TGG - Chr7:81814758-81814777 MsG0780040739.01.T01:intron 50.0%
!! GTGTGTCCGTTGGGTTGTTT+TGG + Chr7:81813081-81813100 None:intergenic 50.0%
!! GTTGGCGGATTGTAATGCCT+TGG + Chr7:81813185-81813204 None:intergenic 50.0%
!! TCTCTTTCAGGATGGGTTGG+CGG + Chr7:81813200-81813219 None:intergenic 50.0%
AAGCAGAAGGTTGAGGGGTG+TGG + Chr7:81813898-81813917 None:intergenic 55.0%
CTGATTGGCGTGTGTCCGTT+GGG + Chr7:81813090-81813109 None:intergenic 55.0%
GCAAGGGGTTATTTGAGCCC+AGG - Chr7:81814354-81814373 MsG0780040739.01.T01:intron 55.0%
GCACGGATTCGAGACGTTGA+AGG + Chr7:81815226-81815245 None:intergenic 55.0%
GCCAAATGCTTCATCCGGCA+TGG - Chr7:81812324-81812343 MsG0780040739.01.T01:three_prime_UTR 55.0%
GCCCCTTTGCTCGCAATGTT+CGG + Chr7:81813967-81813986 None:intergenic 55.0%
GCCCCTTTGTTCGCAATGCT+CGG + Chr7:81813387-81813406 None:intergenic 55.0%
GGACCGAACATTGCGAGCAA+AGG - Chr7:81813961-81813980 MsG0780040739.01.T01:intron 55.0%
GGCTACTGACCCCACAGAAA+TGG - Chr7:81815315-81815334 MsG0780040739.01.T01:CDS 55.0%
GGGGTAAGCAGAAGGTTGAG+GGG + Chr7:81813903-81813922 None:intergenic 55.0%
GTCTTTCAGAGGTCTCAGCC+GGG - Chr7:81812166-81812185 MsG0780040739.01.T01:three_prime_UTR 55.0%
GTTCTCATCAACGCCCATGC+CGG + Chr7:81812341-81812360 None:intergenic 55.0%
TCTGATTGGCGTGTGTCCGT+TGG + Chr7:81813091-81813110 None:intergenic 55.0%
TTTCGGACAGGGTGTGTTGG+TGG - Chr7:81814485-81814504 MsG0780040739.01.T01:intron 55.0%
TTTCTGTGGGGTCAGTAGCC+TGG + Chr7:81815315-81815334 None:intergenic 55.0%
TTTGCTTGGAGGCTCCTACG+AGG + Chr7:81814106-81814125 None:intergenic 55.0%
! CCCATGCCGGATGAAGCATT+TGG + Chr7:81812328-81812347 None:intergenic 55.0%
! CGGAGATTCTGGTTACGTGG+TGG + Chr7:81813520-81813539 None:intergenic 55.0%
! GGACCGAGCATTGCGAACAA+AGG - Chr7:81813381-81813400 MsG0780040739.01.T01:intron 55.0%
!! GGCGGATTGTAATGCCTTGG+AGG + Chr7:81813182-81813201 None:intergenic 55.0%
! CGGACAGGGTGTGTTGGTGG+TGG - Chr7:81814488-81814507 MsG0780040739.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 81812079 81815650 81812079 ID=MsG0780040739.01;Name=MsG0780040739.01
Chr7 mRNA 81812079 81815650 81812079 ID=MsG0780040739.01.T01;Parent=MsG0780040739.01;Name=MsG0780040739.01.T01;_AED=0.49;_eAED=0.49;_QI=85|1|1|1|0.5|0.33|3|281|146
Chr7 exon 81812079 81812510 81812079 ID=MsG0780040739.01.T01:exon:19066;Parent=MsG0780040739.01.T01
Chr7 exon 81815139 81815404 81815139 ID=MsG0780040739.01.T01:exon:19065;Parent=MsG0780040739.01.T01
Chr7 exon 81815542 81815650 81815542 ID=MsG0780040739.01.T01:exon:19064;Parent=MsG0780040739.01.T01
Chr7 five_prime_UTR 81815566 81815650 81815566 ID=MsG0780040739.01.T01:five_prime_utr;Parent=MsG0780040739.01.T01
Chr7 CDS 81815542 81815565 81815542 ID=MsG0780040739.01.T01:cds;Parent=MsG0780040739.01.T01
Chr7 CDS 81815139 81815404 81815139 ID=MsG0780040739.01.T01:cds;Parent=MsG0780040739.01.T01
Chr7 CDS 81812360 81812510 81812360 ID=MsG0780040739.01.T01:cds;Parent=MsG0780040739.01.T01
Chr7 three_prime_UTR 81812079 81812359 81812079 ID=MsG0780040739.01.T01:three_prime_utr;Parent=MsG0780040739.01.T01
Gene Sequence

>MsG0780040739.01.T01

ATGTCTTTCAGAGGTCTCAGCCGGCCAAATGCTTCATCCGGCATGGGCGTTGATGAGAACAGCAAAAACACCTTCATGGAATTGAAGCAAAAGAAGGTCCATCGTTATGTCATCTTTAAGGTTGATGAAAAGAAAAGGGAGGTTGTGGTTGAGAAGACTGGTGGTCCTGCTGAGAGTTATGACGATTTCGCCGCGTCTTTGCCTGAGAATGATTGCAGATATGCTGTTTTTGACTTTGATTTTGTCACTGCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCATTGCATGGTCTCCTTCAACGTCTCGAATCCGTGCCAAGATGCTCTATGCCACAACTAAAGAAAGGTTTAGACGTGAGCTAGATGGTGTCCATTATGAAATCCAGGCTACTGACCCCACAGAAATGGATCTTGAAGTGCTGAGGGACCGAGCACACTGA
Protein sequence

>MsG0780040739.01.T01

MSFRGLSRPNASSGMGVDENSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFAASLPENDCRYAVFDFDFVTAENCQKSKIFFIAWSPSTSRIRAKMLYATTKERFRRELDGVHYEIQATDPTEMDLEVLRDRAH*