AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041565.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041565.01.T01 MTR_7g113620 98.947 95 1 0 16 110 32 126 1.30e-63 197
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041565.01.T01 AT5G27490 71.429 105 30 0 6 110 22 126 2.34e-52 168
MsG0780041565.01.T01 AT3G05280 69.524 105 32 0 6 110 21 125 9.14e-49 159

Find 54 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACAAAATGGCATATAGA+TGG 0.306893 7:+92471005 None:intergenic
AAAAGGTCTACTTACAAATC+AGG 0.347085 7:-92472650 None:intergenic
GGTATCCGTTTAAGAGAAAC+TGG 0.360470 7:+92474606 MsG0780041565.01.T01:CDS
GGAAGATTACCGGTGGTTCT+AGG 0.365279 7:+92471593 MsG0780041565.01.T01:CDS
TGGGTGATTGCAGGTGTGGC+AGG 0.371118 7:+92474447 MsG0780041565.01.T01:CDS
AGGTGGTTCTTCATTGTTGC+TGG 0.371924 7:+92474530 MsG0780041565.01.T01:CDS
GCAATCCAGTTTCTCTTAAA+CGG 0.373063 7:-92474611 None:intergenic
CAAGCTCAGGGGAAGATTAC+CGG 0.388535 7:+92471583 MsG0780041565.01.T01:CDS
ACATTTGTGGCACTTACCTT+CGG 0.397228 7:+92474483 MsG0780041565.01.T01:CDS
TTCTTCTGATGAACCTCAGC+AGG 0.399077 7:+92472493 MsG0780041565.01.T01:CDS
CTCAGCAGGGTGGTTGGCTT+CGG 0.402877 7:+92472507 MsG0780041565.01.T01:CDS
TCATTAAAAGTTCCTCTGAA+TGG 0.411432 7:-92472611 None:intergenic
CATTTGTGGCACTTACCTTC+GGG 0.417671 7:+92474484 MsG0780041565.01.T01:CDS
ACGGTGACCGGTGGTGGATC+TGG 0.425336 7:-92471382 None:intergenic
ATATTCAGATGGGTGATTGC+AGG 0.441456 7:+92474438 MsG0780041565.01.T01:intron
ATTTCCTCCATCGCAAGCTC+AGG 0.446741 7:+92471570 MsG0780041565.01.T01:CDS
GAAGTATCGACATCAAAGTA+TGG 0.450124 7:-92472554 None:intergenic
TCTGTTGCAGTTGGCTTTAG+CGG 0.472890 7:+92474558 MsG0780041565.01.T01:CDS
ATTAAAGATCTACCTCTTCA+CGG 0.481807 7:+92474585 MsG0780041565.01.T01:CDS
ATGAACCTCAGCAGGGTGGT+TGG 0.497811 7:+92472501 MsG0780041565.01.T01:CDS
AACTTGACGGTGACCGGTGG+TGG 0.508137 7:-92471388 None:intergenic
GTTCATGTCAGCAACATTTG+TGG 0.509994 7:+92474470 MsG0780041565.01.T01:CDS
TTCCCCTGAGCTTGCGATGG+AGG 0.524017 7:-92471574 None:intergenic
ATCTTCCCCTGAGCTTGCGA+TGG 0.526679 7:-92471577 None:intergenic
CCAGTGAACTTGACGGTGAC+CGG 0.528555 7:-92471394 None:intergenic
CGGGCACATATCATGTCGGC+AGG 0.530948 7:+92474503 MsG0780041565.01.T01:CDS
AAACAAAATGGCATATAGAT+GGG 0.541303 7:+92471006 None:intergenic
CCGGTCACCGTCAAGTTCAC+TGG 0.541760 7:+92471394 MsG0780041565.01.T01:CDS
TCATCAGAAGAACCAGATGC+AGG 0.552062 7:-92472482 None:intergenic
GTTCGTACCAGTGAACTTGA+CGG 0.552167 7:-92471401 None:intergenic
GGGTGATTGCAGGTGTGGCA+GGG 0.554516 7:+92474448 MsG0780041565.01.T01:CDS
ATATCATGTCGGCAGGTGAA+AGG 0.568955 7:+92474510 MsG0780041565.01.T01:CDS
ATACTTTGATGTCGATACTT+CGG 0.569777 7:+92472556 MsG0780041565.01.T01:CDS
GACCGGTGGTGGATCTGGAA+CGG 0.576104 7:-92471377 None:intergenic
AAAGGTCTACTTACAAATCA+GGG 0.579016 7:-92472649 None:intergenic
TTTCCTCCATCGCAAGCTCA+GGG 0.583701 7:+92471571 MsG0780041565.01.T01:CDS
TCGAGGTGGCCTAGAACCAC+CGG 0.584989 7:-92471602 None:intergenic
GGCCGTTCCAGATCCACCAC+CGG 0.597655 7:+92471375 MsG0780041565.01.T01:intron
CAGATGGGTGATTGCAGGTG+TGG 0.599018 7:+92474443 MsG0780041565.01.T01:intron
GTCTACTTACAAATCAGGGT+TGG 0.601290 7:-92472645 None:intergenic
TCTTCTGATGAACCTCAGCA+GGG 0.619382 7:+92472494 MsG0780041565.01.T01:CDS
AGGCCACCTCGAGATGCAGA+TGG 0.625410 7:+92471613 MsG0780041565.01.T01:CDS
CGAAGCCAACCACCCTGCTG+AGG 0.631145 7:-92472506 None:intergenic
TCTGATGAACCTCAGCAGGG+TGG 0.640708 7:+92472497 MsG0780041565.01.T01:CDS
CTTAAACGGATACCGTGAAG+AGG 0.642616 7:-92474597 None:intergenic
TCATGTCGGCAGGTGAAAGG+TGG 0.649545 7:+92474513 MsG0780041565.01.T01:CDS
ATACTTCGGATGTTCTAGAG+AGG 0.653109 7:+92472570 MsG0780041565.01.T01:CDS
AAAATACCATCTGCATCTCG+AGG 0.655529 7:-92471619 None:intergenic
CCGACATGATATGTGCCCGA+AGG 0.664024 7:-92474499 None:intergenic
CCTTCGGGCACATATCATGT+CGG 0.666006 7:+92474499 MsG0780041565.01.T01:CDS
TTCCTCCATCGCAAGCTCAG+GGG 0.676586 7:+92471572 MsG0780041565.01.T01:CDS
ATACCATCTGCATCTCGAGG+TGG 0.680065 7:-92471616 None:intergenic
GCTCAGGGGAAGATTACCGG+TGG 0.714030 7:+92471586 MsG0780041565.01.T01:CDS
GTGAACTTGACGGTGACCGG+TGG 0.721035 7:-92471391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATATTTAAAGAATTAT+TGG - Chr7:92472704-92472723 None:intergenic 10.0%
!! ATAATAGAATTAGAGTATAA+CGG - Chr7:92473739-92473758 None:intergenic 15.0%
!! ATTAAATATTGTAGCTAAAT+TGG + Chr7:92472785-92472804 MsG0780041565.01.T01:intron 15.0%
!! TATAAGTGCTTAATTAAATT+GGG - Chr7:92471825-92471844 None:intergenic 15.0%
!!! TTTTTTATTATATTTGAGAC+CGG - Chr7:92473827-92473846 None:intergenic 15.0%
!! AGTAGTACTATATAAAATAC+TGG + Chr7:92473944-92473963 MsG0780041565.01.T01:intron 20.0%
!! ATATCAGAAATAAGTATTAG+TGG - Chr7:92473607-92473626 None:intergenic 20.0%
!! ATTGAAGAACTATAATACAT+TGG + Chr7:92472854-92472873 MsG0780041565.01.T01:intron 20.0%
!! CTATAAGTGCTTAATTAAAT+TGG - Chr7:92471826-92471845 None:intergenic 20.0%
!! CTATATGAACTAACATAATT+TGG + Chr7:92473421-92473440 MsG0780041565.01.T01:intron 20.0%
!! TACAGATCAAATATCAAAAT+TGG - Chr7:92471714-92471733 None:intergenic 20.0%
!! TATACTCTAATTCTATTATC+TGG + Chr7:92473740-92473759 MsG0780041565.01.T01:intron 20.0%
!! TATTATTGTGATTAAAAGAC+TGG - Chr7:92471685-92471704 None:intergenic 20.0%
!! TATTCAATTTCAACTATGTT+TGG + Chr7:92472739-92472758 MsG0780041565.01.T01:intron 20.0%
!!! AATTAACCGATTCAATTAAA+CGG + Chr7:92471457-92471476 MsG0780041565.01.T01:intron 20.0%
!!! CTAATACTTATTTCTGATAT+AGG + Chr7:92473607-92473626 MsG0780041565.01.T01:intron 20.0%
!!! GTATTTTATATAGTACTACT+CGG - Chr7:92473944-92473963 None:intergenic 20.0%
!!! TACTATCATCTACATATTTT+AGG - Chr7:92472832-92472851 None:intergenic 20.0%
!!! TATTATGTTTTCCCTTTATT+TGG + Chr7:92472902-92472921 MsG0780041565.01.T01:intron 20.0%
! AACATAATTTGGAGATTACA+AGG + Chr7:92473432-92473451 MsG0780041565.01.T01:intron 25.0%
! AATAAAATGAGCAACAGAAA+AGG - Chr7:92472670-92472689 None:intergenic 25.0%
! AGAAAAGACTACAATTGTTA+AGG - Chr7:92473676-92473695 None:intergenic 25.0%
! CAGAAAGAAAAAGAAAAGAA+AGG - Chr7:92471311-92471330 None:intergenic 25.0%
! GAAATCAGAATGATAGAATT+TGG - Chr7:92471335-92471354 None:intergenic 25.0%
! GCGAATATATAATAACCTAT+TGG - Chr7:92473037-92473056 None:intergenic 25.0%
! TAGAAAACATAAGAACTAAC+AGG - Chr7:92473074-92473093 None:intergenic 25.0%
! TCATATTTACTTGATATGCA+CGG + Chr7:92472224-92472243 MsG0780041565.01.T01:intron 25.0%
! TTATTTGTGAACATCATATG+TGG + Chr7:92473784-92473803 MsG0780041565.01.T01:intron 25.0%
!! AAAAGCAACTTTTCCTTTTA+GGG + Chr7:92473476-92473495 MsG0780041565.01.T01:intron 25.0%
!! ACTATAGAAGTATAGTCTAT+GGG - Chr7:92473578-92473597 None:intergenic 25.0%
!! AGCTATAAACCATTTTCATA+AGG + Chr7:92471921-92471940 MsG0780041565.01.T01:intron 25.0%
!! TAAAATTTCTAGAAGCACAA+AGG - Chr7:92472365-92472384 None:intergenic 25.0%
!! TCAAACAAAGTTGAAGTATT+TGG - Chr7:92473891-92473910 None:intergenic 25.0%
!! TCTTTTGATCATCATTGTAT+TGG + Chr7:92473262-92473281 MsG0780041565.01.T01:intron 25.0%
!!! GGATTTTAGTTTTACTGATA+TGG + Chr7:92472104-92472123 MsG0780041565.01.T01:intron 25.0%
!!! TATAATACATTGGTGGTTTT+GGG + Chr7:92472864-92472883 MsG0780041565.01.T01:intron 25.0%
!!! TTGTGCTTCTAGAAATTTTA+TGG + Chr7:92472365-92472384 MsG0780041565.01.T01:intron 25.0%
AAAAGGTCTACTTACAAATC+AGG - Chr7:92472653-92472672 None:intergenic 30.0%
AAAGGTCTACTTACAAATCA+GGG - Chr7:92472652-92472671 None:intergenic 30.0%
AATAAGCTAAAAAACACTCG+TGG + Chr7:92471965-92471984 MsG0780041565.01.T01:intron 30.0%
AATATTTGTAGCAGCATCTA+TGG + Chr7:92474090-92474109 MsG0780041565.01.T01:intron 30.0%
ACTCTAATTCTATTATCTGG+TGG + Chr7:92473743-92473762 MsG0780041565.01.T01:intron 30.0%
AGATGACATCAAACTTCAAA+GGG + Chr7:92472077-92472096 MsG0780041565.01.T01:intron 30.0%
AGTGATCCGTTTAATTGAAT+CGG - Chr7:92471466-92471485 None:intergenic 30.0%
ATACTTTGATGTCGATACTT+CGG + Chr7:92472556-92472575 MsG0780041565.01.T01:CDS 30.0%
ATATTTGTAGCAGCATCTAT+GGG + Chr7:92474091-92474110 MsG0780041565.01.T01:intron 30.0%
ATTAAAGATCTACCTCTTCA+CGG + Chr7:92474585-92474604 MsG0780041565.01.T01:CDS 30.0%
CATATTTACTTGATATGCAC+GGG + Chr7:92472225-92472244 MsG0780041565.01.T01:intron 30.0%
CCATGAAATAATTACCTCAA+TGG + Chr7:92471782-92471801 MsG0780041565.01.T01:intron 30.0%
CCATTGAGGTAATTATTTCA+TGG - Chr7:92471785-92471804 None:intergenic 30.0%
GAAGAACTATAATACATTGG+TGG + Chr7:92472857-92472876 MsG0780041565.01.T01:intron 30.0%
GAAGAAGAGAAAAGTTATAC+AGG - Chr7:92471284-92471303 None:intergenic 30.0%
GTATAGACAAAAGAGAATGA+TGG - Chr7:92474216-92474235 None:intergenic 30.0%
TAACAGAATGAGAATGCAAT+TGG - Chr7:92471438-92471457 None:intergenic 30.0%
TAAGAACTAACAGGTTTACT+TGG - Chr7:92473065-92473084 None:intergenic 30.0%
TCATTAAAAGTTCCTCTGAA+TGG - Chr7:92472614-92472633 None:intergenic 30.0%
TCCAAGATACCTTATGAAAA+TGG - Chr7:92471933-92471952 None:intergenic 30.0%
! CAAAAGCAACTTTTCCTTTT+AGG + Chr7:92473475-92473494 MsG0780041565.01.T01:intron 30.0%
! CAATGTGAAGAAGTATATCT+CGG + Chr7:92472970-92472989 MsG0780041565.01.T01:intron 30.0%
! CTTTGTTTATGCATATTAGC+CGG + Chr7:92473131-92473150 MsG0780041565.01.T01:intron 30.0%
! GACTATAGAAGTATAGTCTA+TGG - Chr7:92473579-92473598 None:intergenic 30.0%
! TATAGGAACTGATTCTAACA+TGG - Chr7:92473376-92473395 None:intergenic 30.0%
! TCATGAACAGGATCTTTTTA+GGG - Chr7:92473228-92473247 None:intergenic 30.0%
! TTATTATATTTGAGACCGGA+GGG - Chr7:92473823-92473842 None:intergenic 30.0%
! TTCATGAACAGGATCTTTTT+AGG - Chr7:92473229-92473248 None:intergenic 30.0%
! TTTATTATATTTGAGACCGG+AGG - Chr7:92473824-92473843 None:intergenic 30.0%
!! ACCATTTTCATAAGGTATCT+TGG + Chr7:92471929-92471948 MsG0780041565.01.T01:intron 30.0%
!! CTAAAAGGAAAAGTTGCTTT+TGG - Chr7:92473477-92473496 None:intergenic 30.0%
!! CTATAATACATTGGTGGTTT+TGG + Chr7:92472863-92472882 MsG0780041565.01.T01:intron 30.0%
!! TATGTTTTCCCTTTATTTGG+CGG + Chr7:92472905-92472924 MsG0780041565.01.T01:intron 30.0%
!! TCCCTCTAAAGTTAAAAAAC+TGG - Chr7:92473991-92474010 None:intergenic 30.0%
!!! AATACTGGTTTTCTAAGAAG+AGG + Chr7:92473959-92473978 MsG0780041565.01.T01:intron 30.0%
!!! GCCAGTTTTTTAACTTTAGA+GGG + Chr7:92473987-92474006 MsG0780041565.01.T01:intron 30.0%
!!! TGCCAGTTTTTTAACTTTAG+AGG + Chr7:92473986-92474005 MsG0780041565.01.T01:intron 30.0%
AAAGATCCTGTTCATGAACA+TGG + Chr7:92473298-92473317 MsG0780041565.01.T01:intron 35.0%
AACAAAAGGGTTCACATTTC+AGG - Chr7:92474387-92474406 None:intergenic 35.0%
AAGATCCTGTTCATGAAACA+TGG + Chr7:92473232-92473251 MsG0780041565.01.T01:intron 35.0%
AAGATCCTGTTCATGAACAT+GGG + Chr7:92473299-92473318 MsG0780041565.01.T01:intron 35.0%
AAGTGAACTGAGTATAGTCA+GGG + Chr7:92473156-92473175 MsG0780041565.01.T01:intron 35.0%
ACAAACACTGCACAAACAAA+AGG - Chr7:92474401-92474420 None:intergenic 35.0%
ACCATAATTGTACTCAGGTA+TGG + Chr7:92474043-92474062 MsG0780041565.01.T01:intron 35.0%
ACCCATCTGAATATATCCAA+TGG - Chr7:92474432-92474451 None:intergenic 35.0%
AGAAAAGAGATAGATCTCTG+TGG + Chr7:92471178-92471197 MsG0780041565.01.T01:intron 35.0%
AGATCCTGTTCATGAAACAT+GGG + Chr7:92473233-92473252 MsG0780041565.01.T01:intron 35.0%
AGCAACTATTAACACCATTG+AGG - Chr7:92471799-92471818 None:intergenic 35.0%
AGCTGGAATAAAGACAAACA+GGG - Chr7:92474303-92474322 None:intergenic 35.0%
AGTATAACGGTTAGTAGTCA+TGG - Chr7:92473726-92473745 None:intergenic 35.0%
ATGACATAAATCTGGTGACT+TGG + Chr7:92474162-92474181 MsG0780041565.01.T01:intron 35.0%
ATGGGACTATGACATAAATC+TGG + Chr7:92474154-92474173 MsG0780041565.01.T01:intron 35.0%
CAAAACTGGTGCATATTACT+GGG + Chr7:92473534-92473553 MsG0780041565.01.T01:intron 35.0%
CAAACACTGCACAAACAAAA+GGG - Chr7:92474400-92474419 None:intergenic 35.0%
CAAACAGGGAATATCCATAT+AGG - Chr7:92474289-92474308 None:intergenic 35.0%
CACTTAATCTCGTTTCTTTC+AGG + Chr7:92471354-92471373 MsG0780041565.01.T01:intron 35.0%
CCCATCTGAATATATCCAAT+GGG - Chr7:92474431-92474450 None:intergenic 35.0%
CCCATTGGATATATTCAGAT+GGG + Chr7:92474428-92474447 MsG0780041565.01.T01:intron 35.0%
CCTAAATGCTTGAATGGTAA+CGG + Chr7:92473639-92473658 MsG0780041565.01.T01:intron 35.0%
CCTATATAGTCACTATTCCA+GGG + Chr7:92473390-92473409 MsG0780041565.01.T01:intron 35.0%
GAATATATCCAATGGGACAA+TGG - Chr7:92474424-92474443 None:intergenic 35.0%
GAGATGACATCAAACTTCAA+AGG + Chr7:92472076-92472095 MsG0780041565.01.T01:intron 35.0%
GCAATCCAGTTTCTCTTAAA+CGG - Chr7:92474614-92474633 None:intergenic 35.0%
GCATATCTTGTATTGCCAAT+AGG + Chr7:92473019-92473038 MsG0780041565.01.T01:intron 35.0%
GCATATTACTGGGACTAAAT+AGG + Chr7:92473544-92473563 MsG0780041565.01.T01:intron 35.0%
GCTAGTCGATAAATTCAAAC+AGG + Chr7:92472041-92472060 MsG0780041565.01.T01:intron 35.0%
GGAATTTAGAAAGATGTGAC+TGG + Chr7:92472287-92472306 MsG0780041565.01.T01:intron 35.0%
GTTCAACTATTCTGCCTATA+TGG + Chr7:92474272-92474291 MsG0780041565.01.T01:intron 35.0%
TAACATGGACAAGTGTTACA+AGG - Chr7:92473361-92473380 None:intergenic 35.0%
TAAGTCCTTGTAAGACTGTT+TGG - Chr7:92472020-92472039 None:intergenic 35.0%
TCCATACCTGAGTACAATTA+TGG - Chr7:92474047-92474066 None:intergenic 35.0%
TCCCATTGGATATATTCAGA+TGG + Chr7:92474427-92474446 MsG0780041565.01.T01:intron 35.0%
TCCTATATAGTCACTATTCC+AGG + Chr7:92473389-92473408 MsG0780041565.01.T01:intron 35.0%
TCTGCATAAAATGAGTCACA+TGG - Chr7:92472449-92472468 None:intergenic 35.0%
TGCTGCTACAAATATTAGAG+TGG - Chr7:92474086-92474105 None:intergenic 35.0%
TTCATATAGATGTTAGTCCC+TGG - Chr7:92473410-92473429 None:intergenic 35.0%
! AGATTCAGTTGTGTGTTACT+TGG - Chr7:92472161-92472180 None:intergenic 35.0%
! ATTGATAGTCAACAGCTTCA+AGG + Chr7:92471251-92471270 MsG0780041565.01.T01:intron 35.0%
! CAATTGTAGTCTTTTCTGCT+TGG + Chr7:92473679-92473698 MsG0780041565.01.T01:intron 35.0%
! TCATTTTCAAAACCTGCATC+TGG + Chr7:92472470-92472489 MsG0780041565.01.T01:CDS 35.0%
!! GAAGTATCGACATCAAAGTA+TGG - Chr7:92472557-92472576 None:intergenic 35.0%
!! TTCCTTTTAGGGATTCAAAC+CGG + Chr7:92473487-92473506 MsG0780041565.01.T01:intron 35.0%
!!! GATTCACTTTTTCCATTCAG+AGG + Chr7:92472599-92472618 MsG0780041565.01.T01:CDS 35.0%
AAAATACCATCTGCATCTCG+AGG - Chr7:92471622-92471641 None:intergenic 40.0%
AAACCGGGTAGAATGTTGTA+GGG + Chr7:92473503-92473522 MsG0780041565.01.T01:intron 40.0%
AAACTCCCATGTTCATGAAC+AGG - Chr7:92473307-92473326 None:intergenic 40.0%
AACGGATCACTTTCCATTGT+CGG + Chr7:92471475-92471494 MsG0780041565.01.T01:intron 40.0%
AACTCCCATGTTTCATGAAC+AGG - Chr7:92473240-92473259 None:intergenic 40.0%
AAGGAACTGTAAGGGAAACA+TGG + Chr7:92472313-92472332 MsG0780041565.01.T01:intron 40.0%
AATCCCTACAACATTCTACC+CGG - Chr7:92473509-92473528 None:intergenic 40.0%
AATGAAATTCGCGCTACTTG+CGG - Chr7:92471504-92471523 None:intergenic 40.0%
ACAAGCTGAAGGATCAGAAA+TGG + Chr7:92474135-92474154 MsG0780041565.01.T01:intron 40.0%
ACATATAGCACACAAGCTGA+AGG + Chr7:92474124-92474143 MsG0780041565.01.T01:intron 40.0%
ACATTTGTGGCACTTACCTT+CGG + Chr7:92474483-92474502 MsG0780041565.01.T01:CDS 40.0%
ACCATTCAAGCATTTAGGAG+TGG - Chr7:92473637-92473656 None:intergenic 40.0%
ACTGATATGGAGATACTCGA+CGG + Chr7:92472117-92472136 MsG0780041565.01.T01:intron 40.0%
ACTGGAAGAAGGAACTGTAA+GGG + Chr7:92472305-92472324 MsG0780041565.01.T01:intron 40.0%
AGAAAGATGTGACTGGAAGA+AGG + Chr7:92472294-92472313 MsG0780041565.01.T01:intron 40.0%
AGCTCACCATAATTGTACTC+AGG + Chr7:92474038-92474057 MsG0780041565.01.T01:intron 40.0%
AGGAACTGTAAGGGAAACAT+GGG + Chr7:92472314-92472333 MsG0780041565.01.T01:intron 40.0%
ATATTCAGATGGGTGATTGC+AGG + Chr7:92474438-92474457 MsG0780041565.01.T01:intron 40.0%
CAAGCTGAAGGATCAGAAAT+GGG + Chr7:92474136-92474155 MsG0780041565.01.T01:intron 40.0%
CAAGGACTTGAACCAAAACA+AGG + Chr7:92473450-92473469 MsG0780041565.01.T01:intron 40.0%
CATCAAACTTCAAAGGGACT+TGG + Chr7:92472083-92472102 MsG0780041565.01.T01:intron 40.0%
CCAAAACTGGTGCATATTAC+TGG + Chr7:92473533-92473552 MsG0780041565.01.T01:intron 40.0%
CCCTGGAATAGTGACTATAT+AGG - Chr7:92473393-92473412 None:intergenic 40.0%
CCGTTACCATTCAAGCATTT+AGG - Chr7:92473642-92473661 None:intergenic 40.0%
CCTCAAATACTTCTCTGTAC+CGG + Chr7:92474241-92474260 MsG0780041565.01.T01:intron 40.0%
CTAAGTACGAACTGGATCAT+GGG - Chr7:92471037-92471056 None:intergenic 40.0%
CTATACTCAGTTCACTTCTC+CGG - Chr7:92473153-92473172 None:intergenic 40.0%
GAAGAAGGAAAGATGATGCA+AGG + Chr7:92471210-92471229 MsG0780041565.01.T01:intron 40.0%
GAAGTGAACTGAGTATAGTC+AGG + Chr7:92473155-92473174 MsG0780041565.01.T01:intron 40.0%
GAGCTGGAATAAAGACAAAC+AGG - Chr7:92474304-92474323 None:intergenic 40.0%
GGTATCCGTTTAAGAGAAAC+TGG + Chr7:92474606-92474625 MsG0780041565.01.T01:CDS 40.0%
GTAGCTAAATTGGTGAGTTG+TGG + Chr7:92472795-92472814 MsG0780041565.01.T01:intron 40.0%
GTAGGGATTAAAGCCAAAAC+TGG + Chr7:92473520-92473539 MsG0780041565.01.T01:intron 40.0%
GTCTACTTACAAATCAGGGT+TGG - Chr7:92472648-92472667 None:intergenic 40.0%
GTTCATGTCAGCAACATTTG+TGG + Chr7:92474470-92474489 MsG0780041565.01.T01:CDS 40.0%
GTTTGTCTTTATTCCAGCTC+TGG + Chr7:92474304-92474323 MsG0780041565.01.T01:intron 40.0%
TCCACTCCTAAATGCTTGAA+TGG + Chr7:92473633-92473652 MsG0780041565.01.T01:intron 40.0%
TGATGTCATCTCCTCTACTA+TGG - Chr7:92472068-92472087 None:intergenic 40.0%
TTCAAACAGGTCCATAGTAG+AGG + Chr7:92472054-92472073 MsG0780041565.01.T01:intron 40.0%
TTCATGGTGACTAGCAATGA+TGG - Chr7:92471769-92471788 None:intergenic 40.0%
TTCTGTCTGTGAATGTCTGA+TGG + Chr7:92472266-92472285 MsG0780041565.01.T01:intron 40.0%
! CCAGTAATATGCACCAGTTT+TGG - Chr7:92473536-92473555 None:intergenic 40.0%
! CTGGTATTTTCTGTTGCAGT+TGG + Chr7:92474549-92474568 MsG0780041565.01.T01:CDS 40.0%
!! ATACTTCGGATGTTCTAGAG+AGG + Chr7:92472570-92472589 MsG0780041565.01.T01:CDS 40.0%
!! TCCTTTTAGGGATTCAAACC+GGG + Chr7:92473488-92473507 MsG0780041565.01.T01:intron 40.0%
!!! ACATATTTTAGGACTGCCAG+TGG - Chr7:92472821-92472840 None:intergenic 40.0%
!!! GTTGCTTTTGGTCCTTGTTT+TGG - Chr7:92473465-92473484 None:intergenic 40.0%
!!! TGGTCTGCTGGTTTGTTTTA+TGG + Chr7:92474182-92474201 MsG0780041565.01.T01:intron 40.0%
AATAGTTGAACAAGTCCCGC+CGG - Chr7:92474263-92474282 None:intergenic 45.0%
AGAGTGGTGCAAATCCAGAA+TGG - Chr7:92474070-92474089 None:intergenic 45.0%
AGGTGGTTCTTCATTGTTGC+TGG + Chr7:92474530-92474549 MsG0780041565.01.T01:CDS 45.0%
ATATCATGTCGGCAGGTGAA+AGG + Chr7:92474510-92474529 MsG0780041565.01.T01:CDS 45.0%
CAAACCGGGTAGAATGTTGT+AGG + Chr7:92473502-92473521 MsG0780041565.01.T01:intron 45.0%
CAAATACTTCTCTGTACCGG+CGG + Chr7:92474244-92474263 MsG0780041565.01.T01:intron 45.0%
CATTTGTGGCACTTACCTTC+GGG + Chr7:92474484-92474503 MsG0780041565.01.T01:CDS 45.0%
CGAAAACTGAGTGCTAGTAG+CGG + Chr7:92471060-92471079 MsG0780041565.01.T01:intron 45.0%
CTGATATGGAGATACTCGAC+GGG + Chr7:92472118-92472137 MsG0780041565.01.T01:intron 45.0%
CTGTGGATCTGAGAAGAAGA+AGG + Chr7:92471195-92471214 MsG0780041565.01.T01:intron 45.0%
CTTAAACGGATACCGTGAAG+AGG - Chr7:92474600-92474619 None:intergenic 45.0%
GAAGGAAAGATGATGCAAGG+AGG + Chr7:92471213-92471232 MsG0780041565.01.T01:intron 45.0%
GACCGGAGGGAGTAAAAATT+AGG - Chr7:92473810-92473829 None:intergenic 45.0%
GACTGGAAGAAGGAACTGTA+AGG + Chr7:92472304-92472323 MsG0780041565.01.T01:intron 45.0%
GCTAAGTACGAACTGGATCA+TGG - Chr7:92471038-92471057 None:intergenic 45.0%
GCTCTCCAAACAGTCTTACA+AGG + Chr7:92472012-92472031 MsG0780041565.01.T01:intron 45.0%
GTGTTTGTCCATTGTCCCAT+TGG + Chr7:92474413-92474432 MsG0780041565.01.T01:intron 45.0%
GTTCGTACCAGTGAACTTGA+CGG - Chr7:92471404-92471423 None:intergenic 45.0%
TACTCAGGTATGGACCATTC+TGG + Chr7:92474053-92474072 MsG0780041565.01.T01:intron 45.0%
TCATCAGAAGAACCAGATGC+AGG - Chr7:92472485-92472504 None:intergenic 45.0%
TCTTCTGATGAACCTCAGCA+GGG + Chr7:92472494-92472513 MsG0780041565.01.T01:CDS 45.0%
TTCTTCTGATGAACCTCAGC+AGG + Chr7:92472493-92472512 MsG0780041565.01.T01:CDS 45.0%
TTTCGTCGCTAAGTACGAAC+TGG - Chr7:92471045-92471064 None:intergenic 45.0%
! AAATACTTCTCTGTACCGGC+GGG + Chr7:92474245-92474264 MsG0780041565.01.T01:intron 45.0%
! ACCCGGTTTGAATCCCTAAA+AGG - Chr7:92473492-92473511 None:intergenic 45.0%
! GGCCTAATTTTTACTCCCTC+CGG + Chr7:92473805-92473824 MsG0780041565.01.T01:intron 45.0%
!! CCGGTACAGAGAAGTATTTG+AGG - Chr7:92474244-92474263 None:intergenic 45.0%
!! TCTGTTGCAGTTGGCTTTAG+CGG + Chr7:92474558-92474577 MsG0780041565.01.T01:CDS 45.0%
AATTGGTGAGTTGTGGCCAC+TGG + Chr7:92472802-92472821 MsG0780041565.01.T01:intron 50.0%
ATACCATCTGCATCTCGAGG+TGG - Chr7:92471619-92471638 None:intergenic 50.0%
ATTTCCTCCATCGCAAGCTC+AGG + Chr7:92471570-92471589 MsG0780041565.01.T01:CDS 50.0%
CAAGCTCAGGGGAAGATTAC+CGG + Chr7:92471583-92471602 MsG0780041565.01.T01:CDS 50.0%
CCAGCTCACCGCCAAATAAA+GGG - Chr7:92472916-92472935 None:intergenic 50.0%
CCTTCGGGCACATATCATGT+CGG + Chr7:92474499-92474518 MsG0780041565.01.T01:CDS 50.0%
CTACTTGCGGAATCCGACAA+TGG - Chr7:92471491-92471510 None:intergenic 50.0%
GAGAAGCAACTTACCAGAGC+TGG - Chr7:92474320-92474339 None:intergenic 50.0%
GGAAAGATGATGCAAGGAGG+AGG + Chr7:92471216-92471235 MsG0780041565.01.T01:intron 50.0%
GGAAGATTACCGGTGGTTCT+AGG + Chr7:92471593-92471612 MsG0780041565.01.T01:CDS 50.0%
TTTCCTCCATCGCAAGCTCA+GGG + Chr7:92471571-92471590 MsG0780041565.01.T01:CDS 50.0%
! AGTCTTTTCTGCTTGGCTGC+TGG + Chr7:92473686-92473705 MsG0780041565.01.T01:intron 50.0%
! CCTTTATTTGGCGGTGAGCT+GGG + Chr7:92472914-92472933 MsG0780041565.01.T01:intron 50.0%
! CTTTATTTGGCGGTGAGCTG+GGG + Chr7:92472915-92472934 MsG0780041565.01.T01:intron 50.0%
!! AATCTGGTGACTTGGTCTGC+TGG + Chr7:92474170-92474189 MsG0780041565.01.T01:intron 50.0%
ATCTTCCCCTGAGCTTGCGA+TGG - Chr7:92471580-92471599 None:intergenic 55.0%
ATGAACCTCAGCAGGGTGGT+TGG + Chr7:92472501-92472520 MsG0780041565.01.T01:CDS 55.0%
CAGATGGGTGATTGCAGGTG+TGG + Chr7:92474443-92474462 MsG0780041565.01.T01:intron 55.0%
CCAGTGAACTTGACGGTGAC+CGG - Chr7:92471397-92471416 None:intergenic 55.0%
CCCAGCTCACCGCCAAATAA+AGG - Chr7:92472917-92472936 None:intergenic 55.0%
CCGACATGATATGTGCCCGA+AGG - Chr7:92474502-92474521 None:intergenic 55.0%
TCATGTCGGCAGGTGAAAGG+TGG + Chr7:92474513-92474532 MsG0780041565.01.T01:CDS 55.0%
TCTGATGAACCTCAGCAGGG+TGG + Chr7:92472497-92472516 MsG0780041565.01.T01:CDS 55.0%
TTCCTCCATCGCAAGCTCAG+GGG + Chr7:92471572-92471591 MsG0780041565.01.T01:CDS 55.0%
! CCCTTTATTTGGCGGTGAGC+TGG + Chr7:92472913-92472932 MsG0780041565.01.T01:intron 55.0%
AACTTGACGGTGACCGGTGG+TGG - Chr7:92471391-92471410 None:intergenic 60.0%
AGGCCACCTCGAGATGCAGA+TGG + Chr7:92471613-92471632 MsG0780041565.01.T01:CDS 60.0%
CCGGTCACCGTCAAGTTCAC+TGG + Chr7:92471394-92471413 MsG0780041565.01.T01:CDS 60.0%
CGGGCACATATCATGTCGGC+AGG + Chr7:92474503-92474522 MsG0780041565.01.T01:CDS 60.0%
GCTCAGGGGAAGATTACCGG+TGG + Chr7:92471586-92471605 MsG0780041565.01.T01:CDS 60.0%
GGGTGATTGCAGGTGTGGCA+GGG + Chr7:92474448-92474467 MsG0780041565.01.T01:CDS 60.0%
GTGAACTTGACGGTGACCGG+TGG - Chr7:92471394-92471413 None:intergenic 60.0%
TCGAGGTGGCCTAGAACCAC+CGG - Chr7:92471605-92471624 None:intergenic 60.0%
TGGGTGATTGCAGGTGTGGC+AGG + Chr7:92474447-92474466 MsG0780041565.01.T01:CDS 60.0%
TTCCCCTGAGCTTGCGATGG+AGG - Chr7:92471577-92471596 None:intergenic 60.0%
!! CTCAGCAGGGTGGTTGGCTT+CGG + Chr7:92472507-92472526 MsG0780041565.01.T01:CDS 60.0%
!! GACCGGTGGTGGATCTGGAA+CGG - Chr7:92471380-92471399 None:intergenic 60.0%
CGAAGCCAACCACCCTGCTG+AGG - Chr7:92472509-92472528 None:intergenic 65.0%
GGCCGTTCCAGATCCACCAC+CGG + Chr7:92471375-92471394 MsG0780041565.01.T01:intron 65.0%
!! ACGGTGACCGGTGGTGGATC+TGG - Chr7:92471385-92471404 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 92471013 92474641 92471013 ID=MsG0780041565.01;Name=MsG0780041565.01
Chr7 mRNA 92471013 92474641 92471013 ID=MsG0780041565.01.T01;Parent=MsG0780041565.01;Name=MsG0780041565.01.T01;_AED=0.44;_eAED=0.54;_QI=0|0.5|0.6|1|1|1|5|0|173
Chr7 exon 92471013 92471027 92471013 ID=MsG0780041565.01.T01:exon:12761;Parent=MsG0780041565.01.T01
Chr7 exon 92471376 92471415 92471376 ID=MsG0780041565.01.T01:exon:12762;Parent=MsG0780041565.01.T01
Chr7 exon 92471554 92471634 92471554 ID=MsG0780041565.01.T01:exon:12763;Parent=MsG0780041565.01.T01
Chr7 exon 92472468 92472657 92472468 ID=MsG0780041565.01.T01:exon:12764;Parent=MsG0780041565.01.T01
Chr7 exon 92474446 92474641 92474446 ID=MsG0780041565.01.T01:exon:12765;Parent=MsG0780041565.01.T01
Chr7 CDS 92471013 92471027 92471013 ID=MsG0780041565.01.T01:cds;Parent=MsG0780041565.01.T01
Chr7 CDS 92471376 92471415 92471376 ID=MsG0780041565.01.T01:cds;Parent=MsG0780041565.01.T01
Chr7 CDS 92471554 92471634 92471554 ID=MsG0780041565.01.T01:cds;Parent=MsG0780041565.01.T01
Chr7 CDS 92472468 92472657 92472468 ID=MsG0780041565.01.T01:cds;Parent=MsG0780041565.01.T01
Chr7 CDS 92474446 92474641 92474446 ID=MsG0780041565.01.T01:cds;Parent=MsG0780041565.01.T01
Gene Sequence

>MsG0780041565.01.T01

ATGGCATATAGATGGGCCGTTCCAGATCCACCACCGGTCACCGTCAAGTTCACTGATTCAAATCTTCAGACATTTCCTCCATCGCAAGCTCAGGGGAAGATTACCGGTGGTTCTAGGCCACCTCGAGATGCAGATGATTCATTTTCAAAACCTGCATCTGGTTCTTCTGATGAACCTCAGCAGGGTGGTTGGCTTCGGAATTTTGCAATTGCTACTTACAAACCATACTTTGATGTCGATACTTCGGATGTTCTAGAGAGGATTATAGATTCACTTTTTCCATTCAGAGGAACTTTTAATGAAAAAACTTCTACCAACCCTGATTTATGGGTGATTGCAGGTGTGGCAGGGTTCATGTCAGCAACATTTGTGGCACTTACCTTCGGGCACATATCATGTCGGCAGGTGAAAGGTGGTTCTTCATTGTTGCTGGTATTTTCTGTTGCAGTTGGCTTTAGCGGTTGTATTAAAGATCTACCTCTTCACGGTATCCGTTTAAGAGAAACTGGATTGCATGAATGA
Protein sequence

>MsG0780041565.01.T01

MAYRWAVPDPPPVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPASGSSDEPQQGGWLRNFAIATYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDLWVIAGVAGFMSATFVALTFGHISCRQVKGGSSLLLVFSVAVGFSGCIKDLPLHGIRLRETGLHE*