AlfalfaGEDB | MsG0880044792.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044792.01

KEGG: K15378
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044792.01.T01	XP_013445755.1	87.5	600	3	2	1	528	1	600	0	1032

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044792.01.T01	O80605	59.217	613	141	9	5	528	2	594	0	682

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044792.01.T01	J7FDE7	87.500	600	3	2	1	528	1	600	0.0	1032

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000172.01	MsG0880044792.01	0.807468	4.980890e-50	2.776567e-47
MsG0180000401.01	MsG0880044792.01	0.809925	1.486712e-50	8.842202e-48
MsG0180001294.01	MsG0880044792.01	0.812827	3.485051e-51	2.238480e-48
MsG0180004510.01	MsG0880044792.01	0.829272	5.649770e-55	5.755060e-52
MsG0180005272.01	MsG0880044792.01	0.862646	4.372770e-64	1.289794e-60
MsG0180005332.01	MsG0880044792.01	0.856414	3.268986e-62	7.796503e-59
MsG0180005419.01	MsG0880044792.01	0.825758	3.936568e-54	3.621029e-51
MsG0180006235.01	MsG0880044792.01	0.824386	8.300482e-54	7.340896e-51
MsG0280007191.01	MsG0880044792.01	0.820850	5.516469e-53	4.415266e-50
MsG0280007686.01	MsG0880044792.01	0.807170	5.762042e-50	3.187012e-47

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044792.01.T01	MTR_8g468330	87.500	600	3	2	1	528	1	600	0.0	1032
MsG0880044792.01.T01	MTR_3g110880	38.909	550	201	8	40	515	7	495	1.81e-106	328
MsG0880044792.01.T01	MTR_1g096910	37.011	562	222	12	44	526	17	525	1.67e-100	313
MsG0880044792.01.T01	MTR_6g033580	36.433	527	185	11	54	493	10	473	1.45e-98	307
MsG0880044792.01.T01	MTR_4g131920	35.673	513	192	8	51	493	27	471	4.68e-92	291
MsG0880044792.01.T01	MTR_4g131920	32.777	479	184	8	51	459	27	437	4.74e-72	237
MsG0880044792.01.T01	MTR_5g067470	50.000	206	97	2	288	493	273	472	2.64e-57	199
MsG0880044792.01.T01	MTR_5g067470	38.158	228	72	4	54	212	28	255	2.54e-34	135
MsG0880044792.01.T01	MTR_6g043880	42.683	246	127	5	288	526	270	508	2.21e-52	186
MsG0880044792.01.T01	MTR_6g043880	32.456	228	85	3	55	213	26	253	1.70e-31	127

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044792.01.T01	AT2G02860	59.217	613	141	9	5	528	2	594	0.0	682
MsG0880044792.01.T01	AT2G02860	69.927	409	110	4	124	528	65	464	0.0	584
MsG0880044792.01.T01	AT1G09960	38.351	558	203	10	36	515	6	500	1.68e-104	323
MsG0880044792.01.T01	AT1G71890	37.072	526	201	12	61	515	31	497	6.94e-98	306
MsG0880044792.01.T01	AT1G22710	34.848	594	221	16	13	526	5	512	9.26e-97	303
MsG0880044792.01.T01	AT5G06170	34.799	523	211	7	61	514	30	491	1.09e-94	297
MsG0880044792.01.T01	AT1G71880	35.478	544	220	8	42	515	16	498	4.56e-94	296
MsG0880044792.01.T01	AT1G66570	35.496	524	207	8	61	514	29	491	5.07e-93	293
MsG0880044792.01.T01	AT2G14670	36.260	524	203	9	61	514	30	492	9.30e-93	292
MsG0880044792.01.T01	AT5G43610	34.686	542	212	10	43	514	23	492	4.15e-90	285

Showing 1 to 10 of 12 entries

Previous1 2Next

Find 153 sgRNAs with CRISPR-Local

Find 507 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCACTCACCGCAAG+TGG	0.538916	8:+49244843	None:intergenic
AAACTGAACACCAGCAGCAA+CGG	0.601392	8:+49250962	None:intergenic
AACAGCAAAGGGAACACTGT+AGG	0.652099	8:+49244679	None:intergenic
AACATTCTAGGATATTCGTC+TGG	0.547818	8:-49248611	MsG0880044792.01.T01:CDS
AACGAAGCATTATTCTTCGT+CGG	0.537348	8:+49251008	None:intergenic
AACTCTGCTGTAACAGCAAA+GGG	0.474853	8:+49244668	None:intergenic
AACTTCATCAGCAAAATATA+GGG	0.451842	8:+49245835	None:intergenic
AAGAAACGATTCTTCCGCCG+CGG	0.705197	8:-49251117	MsG0880044792.01.T01:CDS
AAGAAGAAGCTATGGTGCCA+TGG	0.645737	8:+49251334	None:intergenic
AAGCAGAACAAACACAACCA+GGG	0.677109	8:+49244872	None:intergenic

Showing 1 to 10 of 153 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAACGATTCTCATTG+TGG	+	Chr8:49245854-49245873	None:intergenic	30.0%
AAACTTAGGTACAATTCCTT+AGG	+	Chr8:49246286-49246305	None:intergenic	30.0%
AAATAACACTACACTTTCTC+TGG	-	Chr8:49244735-49244754	MsG0880044792.01.T01:intron	30.0%
AACCTACTATTAAAGACATC+AGG	+	Chr8:49250744-49250763	None:intergenic	30.0%
AAGCCCAAATACATAAACAT+TGG	+	Chr8:49247213-49247232	None:intergenic	30.0%
AAGCTCTATTTGTCAAGAAA+GGG	+	Chr8:49247839-49247858	None:intergenic	30.0%
AATATGAAGGCCCAATTAAA+AGG	+	Chr8:49247928-49247947	None:intergenic	30.0%
AATTGTATGAAGCACAAACT+TGG	-	Chr8:49246687-49246706	MsG0880044792.01.T01:intron	30.0%
ACCAATGATGTCCAAAATAT+TGG	-	Chr8:49246732-49246751	MsG0880044792.01.T01:CDS	30.0%
AGACATTGGATACATATTAG+GGG	-	Chr8:49245219-49245238	MsG0880044792.01.T01:intron	30.0%

Showing 1 to 10 of 507 entries

Previous1 2 3 4 5…51Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	49243249	49251381	49243249	ID=MsG0880044792.01;Name=MsG0880044792.01
Chr8	mRNA	49243249	49251381	49243249	ID=MsG0880044792.01.T01;Parent=MsG0880044792.01;Name=MsG0880044792.01.T01;_AED=0.38;_eAED=0.38;_QI=192\|0.8\|1\|1\|1\|1\|11\|305\|528
Chr8	exon	49243249	49243721	49243249	ID=MsG0880044792.01.T01:exon:20457;Parent=MsG0880044792.01.T01
Chr8	exon	49244516	49244559	49244516	ID=MsG0880044792.01.T01:exon:20456;Parent=MsG0880044792.01.T01
Chr8	exon	49244642	49244705	49244642	ID=MsG0880044792.01.T01:exon:20455;Parent=MsG0880044792.01.T01
Chr8	exon	49244857	49245090	49244857	ID=MsG0880044792.01.T01:exon:20454;Parent=MsG0880044792.01.T01
Chr8	exon	49245228	49245371	49245228	ID=MsG0880044792.01.T01:exon:20453;Parent=MsG0880044792.01.T01
Chr8	exon	49245532	49245885	49245532	ID=MsG0880044792.01.T01:exon:20452;Parent=MsG0880044792.01.T01
Chr8	exon	49246725	49246800	49246725	ID=MsG0880044792.01.T01:exon:20451;Parent=MsG0880044792.01.T01
Chr8	exon	49248590	49248689	49248590	ID=MsG0880044792.01.T01:exon:20450;Parent=MsG0880044792.01.T01
Chr8	exon	49249024	49249057	49249024	ID=MsG0880044792.01.T01:exon:20449;Parent=MsG0880044792.01.T01
Chr8	exon	49249519	49249617	49249519	ID=MsG0880044792.01.T01:exon:20448;Parent=MsG0880044792.01.T01
Chr8	exon	49250920	49251381	49250920	ID=MsG0880044792.01.T01:exon:20447;Parent=MsG0880044792.01.T01
Chr8	five_prime_UTR	49251190	49251381	49251190	ID=MsG0880044792.01.T01:five_prime_utr;Parent=MsG0880044792.01.T01
Chr8	CDS	49250920	49251189	49250920	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49249519	49249617	49249519	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49249024	49249057	49249024	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49248590	49248689	49248590	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49246725	49246800	49246725	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49245532	49245885	49245532	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49245228	49245371	49245228	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49244857	49245090	49244857	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49244642	49244705	49244642	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49244516	49244559	49244516	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	CDS	49243554	49243721	49243554	ID=MsG0880044792.01.T01:cds;Parent=MsG0880044792.01.T01
Chr8	three_prime_UTR	49243249	49243553	49243249	ID=MsG0880044792.01.T01:three_prime_utr;Parent=MsG0880044792.01.T01

Gene Sequence

>MsG0880044792.01.T01

ATGGCGGGTAAGTCTGACTCAGTATCGATCCGTGTTCCTTATAAGAATCTAAGAAACGATTCTTCCGCCGCGGAAGTCGAACTCGTCGGCATCGATGGCGACGGCGATGAACCTCGGCATCGGATCGATCTTAATTCACCGCCGCGCGGAGATCAATTACCGACGAAGAATAATGCTTCGTTAACGCATCTTGTTCTTAGTTGCACCGTTGCTGCTGGTGTTCAGTTTGGTTGGGCTTTGCAGCTTTCTCTTCTCACACCTTACATTCAGGTTCAACCTTGTGTTGGTATTTGGAGTGATAAATGTACTTCAAAATTTGGCAGAAGACGTCCATTCATTCTAGCAGGATCTCTTATGATCTCGTTTGCTGGGCCAGCTAGAGCACTTTTGGCAGATCTGGCAGGTCCTGATCAACGCAATGTATCAAATGCTGTCTTTTGCTCATGGATGGCAGTGGGCAACATTCTAGGATATTCGTCTGGTGCTAGTGGAAAGTGGAACAAATGGTTCCCTTTCTTGACAAATAGAGCTTGCTGTGAGGCATGTGGCAATCTTAAGGCAGCATTTCTTGTTGCTGTGGTGTTTTTGACATTATGCACACTTGTAACCCTATATTTTGCTGATGAAGTTCCGCTTACTACTGCAAGTAAACATCACCAGTTATCAGATTCTGCTCCTTTATTGGATGAACAAAATGGCATTGAATTTCCAAAACAAAAGCCTTTATCTGTTATAAATGAGTCCAATGGTAAGTTAAGCGAGGATCGCTCTGAGGAAGTTGTAAATCTGAAGCATGAGAGTTTCAATGCTGGGGAAGATCATAATGAAAATTTAATGGATGGGCCTGGAGCAGTATTGGTTAACTTGTTGACAAGTTTAAGGCATTTGCCACCTGCTATGCATTCAGTGCTGGTTGTAATGGCTCTCACTTGGTTGTCATGGTTTCCCTTCTTTTTGTTCGATACGGATTGGATGGGAAGAGAAGTTTATCATGGGGATCCAAAAGGGACCACTTTGGAAGTAGATCTTTATGATCAAGGTGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTGCTTGGAATTAGCTCTTTTTTAATCGAACCAATGTGTAAGTTGATGGGTGCAAGATTAGTATGGGCAGTGAGCAATTTTGTCGTCTTTGTTTGCATGGCTGGCACTGCTATCATTAGTCTAATTTCTGTCCATGATTATACTCGAGGGATAGAACATGCAATTGGAGCAAGTGAAGGAATCAAGTATGCTTCCCTGGTTGTGTTTGTTCTGCTTGGATTTCCACTTGCGATTACCTACAGTGTTCCCTTTGCTGTTACAGCAGAGTTGACTGCTGATTCAGGTGGTGGCCAAGGATTGGCTATAGGAGTTCTAAATCTTGCAATTGTTGCTCCACAGATGATTATATCCCTTGGTTCTGGTCCATGGGATGCTCTCTTTGGTGGTGGCAATATTCCAGCATTTGTTTTGGCGTCCATCTGTGCTCTAGCCGGTGGCATTGTTGCAACTCTAAAACTGCCAAACCTTTCTAGCAGTTTCAAGTCATCAGGTTTTCATTTCGGCTAG

Protein sequence

>MsG0880044792.01.T01

MAGKSDSVSIRVPYKNLRNDSSAAEVELVGIDGDGDEPRHRIDLNSPPRGDQLPTKNNASLTHLVLSCTVAAGVQFGWALQLSLLTPYIQVQPCVGIWSDKCTSKFGRRRPFILAGSLMISFAGPARALLADLAGPDQRNVSNAVFCSWMAVGNILGYSSGASGKWNKWFPFLTNRACCEACGNLKAAFLVAVVFLTLCTLVTLYFADEVPLTTASKHHQLSDSAPLLDEQNGIEFPKQKPLSVINESNGKLSEDRSEEVVNLKHESFNAGEDHNENLMDGPGAVLVNLLTSLRHLPPAMHSVLVVMALTWLSWFPFFLFDTDWMGREVYHGDPKGTTLEVDLYDQGVREGAFGLLLNSVVLGISSFLIEPMCKLMGARLVWAVSNFVVFVCMAGTAIISLISVHDYTRGIEHAIGASEGIKYASLVVFVLLGFPLAITYSVPFAVTAELTADSGGGQGLAIGVLNLAIVAPQMIISLGSGPWDALFGGGNIPAFVLASICALAGGIVATLKLPNLSSSFKSSGFHFG*