AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015641.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015641.01.T01 MTR_3g073990 92.593 162 12 0 1 162 1 162 2.68e-112 316
MsG0380015641.01.T01 MTR_3g087540 41.406 128 73 2 28 153 25 152 7.44e-31 109
MsG0380015641.01.T01 MTR_2g016020 34.615 156 97 3 3 155 4 157 2.69e-24 93.2
MsG0380015641.01.T01 MTR_2g077940 33.594 128 82 2 28 155 43 167 1.50e-18 78.2
MsG0380015641.01.T01 MTR_2g077960 28.966 145 93 3 18 155 20 161 3.86e-15 69.3
MsG0380015641.01.T01 MTR_2g077080 28.906 128 88 3 28 155 36 160 5.01e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015641.01.T01 AT4G08685 48.101 158 82 0 3 160 2 159 4.24e-54 168
MsG0380015641.01.T01 AT1G78040 37.576 165 98 3 3 162 2 166 5.82e-33 115
MsG0380015641.01.T01 AT1G78040 37.576 165 98 3 3 162 2 166 5.82e-33 115
MsG0380015641.01.T01 AT1G78040 37.576 165 98 3 3 162 2 166 5.82e-33 115
MsG0380015641.01.T01 AT5G10130 40.909 154 86 2 3 154 4 154 3.47e-30 108
MsG0380015641.01.T01 AT4G18596 31.707 164 103 3 1 155 1 164 3.60e-22 87.8
MsG0380015641.01.T01 AT4G18596 31.707 164 103 3 1 155 47 210 9.28e-22 87.8
MsG0380015641.01.T01 AT5G45880 30.723 166 104 3 1 155 1 166 7.15e-21 84.3
MsG0380015641.01.T01 AT1G29140 34.328 134 84 2 26 155 30 163 4.19e-20 82.4

Find 65 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTTATATATATGTTAT+TGG 0.205323 3:+72948604 MsG0380015641.01.T01:three_prime_UTR
TAGTTTATTTACTTTGGATT+TGG 0.238080 3:+72948518 MsG0380015641.01.T01:three_prime_UTR
AGTTTATTTACTTTGGATTT+GGG 0.259659 3:+72948519 MsG0380015641.01.T01:three_prime_UTR
CTTCAAGCAGAAAGGGTTCT+TGG 0.299969 3:-72946342 None:intergenic
GCATAGAGCCATTCTTGAAT+TGG 0.350352 3:+72948792 MsG0380015641.01.T01:three_prime_UTR
TCAATCTTCATCCTTCACTA+TGG 0.355771 3:+72946253 MsG0380015641.01.T01:exon
AGCCATTCTTGAATTGGCTT+TGG 0.357937 3:+72948798 MsG0380015641.01.T01:three_prime_UTR
CAAGAACCCTTTCTGCTTGA+AGG 0.359097 3:+72946343 MsG0380015641.01.T01:CDS
CAATGAATTCTTTCATATGA+TGG 0.367752 3:+72948725 MsG0380015641.01.T01:three_prime_UTR
AATTCCTAGTTTATTTACTT+TGG 0.368713 3:+72948512 MsG0380015641.01.T01:three_prime_UTR
ATTGGCAAACCTGTCATTAG+AGG 0.373550 3:-72948403 None:intergenic
CCAGTTGCATCAGTCTTCCC+TGG 0.379925 3:-72948237 None:intergenic
CGTAATTATATTGTTTATTG+AGG 0.386051 3:+72948633 MsG0380015641.01.T01:three_prime_UTR
AAGCAGAAAGGGTTCTTGGC+TGG 0.404947 3:-72946338 None:intergenic
CCTCAAGCAAATGCAAGAAT+TGG 0.407401 3:+72948473 MsG0380015641.01.T01:CDS
ATTTGATTAAATCTTGATGA+TGG 0.416149 3:+72948555 MsG0380015641.01.T01:three_prime_UTR
ATGTCAGAGGAGGTTGCTTC+TGG 0.416314 3:+72948438 MsG0380015641.01.T01:CDS
AGAGGCCATGCCGTTGTAAC+GGG 0.421384 3:-72948385 None:intergenic
AGTTGCAGCGAAAGAGCACC+TGG 0.422043 3:+72948336 MsG0380015641.01.T01:CDS
CTTTCGCTGCAACTACGCTC+AGG 0.426036 3:-72948327 None:intergenic
AGAAGAAGAAGAATGAGAAA+TGG 0.426492 3:-72946215 None:intergenic
TGTTCTTCCAGCGATGGTTA+TGG 0.427430 3:+72946307 MsG0380015641.01.T01:CDS
TCTGCTATCACTCACATTGC+TGG 0.439139 3:+72946407 MsG0380015641.01.T01:CDS
GTATGTGACCCTTGCCGTGC+TGG 0.440078 3:+72946374 MsG0380015641.01.T01:CDS
AGCAGAAAGGGTTCTTGGCT+GGG 0.458995 3:-72946337 None:intergenic
TAGTGTAATTATGTCATGTT+TGG 0.460001 3:+72948849 MsG0380015641.01.T01:three_prime_UTR
CCAGGGAAGACTGATGCAAC+TGG 0.462248 3:+72948237 MsG0380015641.01.T01:CDS
CTTAGGTGCTGAGGTTATGC+TGG 0.468192 3:+72948173 MsG0380015641.01.T01:intron
ATATACAATCTATGTGGATC+AGG 0.471477 3:+72948263 MsG0380015641.01.T01:CDS
CACGACCCTTCAAGCAGAAA+GGG 0.481464 3:-72946349 None:intergenic
CCAATTCTTGCATTTGCTTG+AGG 0.488555 3:-72948473 None:intergenic
AGGGTTCTTGGCTGGGCGAA+TGG 0.488766 3:-72946330 None:intergenic
GAAGTTGTGTTCTCAAAGCC+AGG 0.495130 3:+72948219 MsG0380015641.01.T01:CDS
AAGAACCCTTTCTGCTTGAA+GGG 0.515228 3:+72946344 MsG0380015641.01.T01:CDS
TTATTGAGGATCATGTGTCT+TGG 0.527504 3:+72948647 MsG0380015641.01.T01:three_prime_UTR
TAGAGGCCATGCCGTTGTAA+CGG 0.531147 3:-72948386 None:intergenic
ATCCAAAGCCAATTCAAGAA+TGG 0.535606 3:-72948800 None:intergenic
TAGTCTCAGTTCTGTTGCTG+TGG 0.539457 3:+72948680 MsG0380015641.01.T01:three_prime_UTR
ACACGACCCTTCAAGCAGAA+AGG 0.545423 3:-72946350 None:intergenic
CGAATGGCCATAACCATCGC+TGG 0.546740 3:-72946314 None:intergenic
TTTCGCTGCAACTACGCTCA+GGG 0.560515 3:-72948326 None:intergenic
CAATTAAAAGGGTGTGTCAG+TGG 0.563724 3:-72946160 None:intergenic
AAATCCAAAGTAAATAAACT+AGG 0.569739 3:-72948516 None:intergenic
ACATAATTACACTAACATGT+TGG 0.575803 3:-72948840 None:intergenic
GTTATTCTCACCCGTTACAA+CGG 0.576439 3:+72948375 MsG0380015641.01.T01:CDS
ACACGTGCTTGGTCACGCCC+AGG 0.584341 3:-72948354 None:intergenic
TGACATGTATAACATTGCAT+TGG 0.586829 3:-72948421 None:intergenic
GTTTCATAACCAGCACGGCA+AGG 0.587642 3:-72946383 None:intergenic
AACTCTTGAAGCCATAGTGA+AGG 0.589099 3:-72946264 None:intergenic
GGTTGCTTCTGGCTGTGCTG+AGG 0.590498 3:+72948449 MsG0380015641.01.T01:CDS
ACGGCATGGCCTCTAATGAC+AGG 0.592575 3:+72948394 MsG0380015641.01.T01:CDS
ATGAATCTGCTTAGGTGCTG+AGG 0.593256 3:+72948164 MsG0380015641.01.T01:intron
TTTGTGTGTTCTTCCAGCGA+TGG 0.596076 3:+72946301 MsG0380015641.01.T01:CDS
TGGAGAATATACAATCTATG+TGG 0.605358 3:+72948257 MsG0380015641.01.T01:CDS
ATAAACAATATAATTACGCA+TGG 0.612317 3:-72948628 None:intergenic
TTTCATAACCAGCACGGCAA+GGG 0.614551 3:-72946382 None:intergenic
GAATATGATTAGTGAAAACA+AGG 0.618972 3:-72948901 None:intergenic
GGGTGAGAATAACACGTGCT+TGG 0.627588 3:-72948365 None:intergenic
TGCAATGTTATACATGTCAG+AGG 0.631370 3:+72948425 MsG0380015641.01.T01:CDS
AAGTTGTGTTCTCAAAGCCA+GGG 0.636901 3:+72948220 MsG0380015641.01.T01:CDS
TCTCACCCGTTACAACGGCA+TGG 0.639648 3:+72948380 MsG0380015641.01.T01:CDS
TTATGCTGGAATGCAAGCAA+AGG 0.653268 3:+72948187 MsG0380015641.01.T01:CDS
CAGAAGTTTCATAACCAGCA+CGG 0.663268 3:-72946388 None:intergenic
AATGTTATACATGTCAGAGG+AGG 0.692196 3:+72948428 MsG0380015641.01.T01:CDS
GTTGCAGCGAAAGAGCACCT+GGG 0.708218 3:+72948337 MsG0380015641.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAAAAATAAAAATA+TGG - Chr3:72946767-72946786 None:intergenic 0.0%
!!! TTTTTTAAAAATAAAAATAT+GGG - Chr3:72946766-72946785 None:intergenic 0.0%
!!! TTAATTAGAAGTATAAAAAA+GGG + Chr3:72948067-72948086 MsG0380015641.01.T01:intron 10.0%
!!! TTTAATTAGAAGTATAAAAA+AGG + Chr3:72948066-72948085 MsG0380015641.01.T01:intron 10.0%
!! AAAATAACTTCGTTAATTAA+TGG + Chr3:72946782-72946801 MsG0380015641.01.T01:intron 15.0%
!! AAAATTTCCCTAATTATTAT+TGG + Chr3:72947607-72947626 MsG0380015641.01.T01:intron 15.0%
!! AAATTTCCCTAATTATTATT+GGG + Chr3:72947608-72947627 MsG0380015641.01.T01:intron 15.0%
!! ATTATATGATAGAACATTAT+GGG + Chr3:72947027-72947046 MsG0380015641.01.T01:intron 15.0%
!! CTTAATCATAATTATCTTAA+CGG + Chr3:72947343-72947362 MsG0380015641.01.T01:intron 15.0%
!! TATGCTTATATATATGTTAT+TGG + Chr3:72948604-72948623 MsG0380015641.01.T01:three_prime_UTR 15.0%
!! TATTATATGATAGAACATTA+TGG + Chr3:72947026-72947045 MsG0380015641.01.T01:intron 15.0%
!!! ACTTTAAATTCCTTAATTTT+TGG + Chr3:72946527-72946546 MsG0380015641.01.T01:intron 15.0%
!!! ATTAAGTTTTAATGTTGTTA+TGG - Chr3:72947329-72947348 None:intergenic 15.0%
!!! ATTGAAGATTTTCAATTAAA+AGG - Chr3:72946175-72946194 None:intergenic 15.0%
!!! TAATTAAGATAATTGGTAAT+TGG + Chr3:72947367-72947386 MsG0380015641.01.T01:intron 15.0%
!!! TATGAATTTTTAAATTTGGT+AGG - Chr3:72947175-72947194 None:intergenic 15.0%
!!! TTGAAGATTTTCAATTAAAA+GGG - Chr3:72946174-72946193 None:intergenic 15.0%
!! AAATCCAAAGTAAATAAACT+AGG - Chr3:72948519-72948538 None:intergenic 20.0%
!! AATAGTGAAATTAAACCAAA+AGG - Chr3:72946503-72946522 None:intergenic 20.0%
!! AATTCCTAGTTTATTTACTT+TGG + Chr3:72948512-72948531 MsG0380015641.01.T01:three_prime_UTR 20.0%
!! AGTTTATTTACTTTGGATTT+GGG + Chr3:72948519-72948538 MsG0380015641.01.T01:three_prime_UTR 20.0%
!! ATAAACAATATAATTACGCA+TGG - Chr3:72948631-72948650 None:intergenic 20.0%
!! ATAGTGAAATTAAACCAAAA+GGG - Chr3:72946502-72946521 None:intergenic 20.0%
!! ATATCTTCCCAATAATAATT+AGG - Chr3:72947618-72947637 None:intergenic 20.0%
!! ATCTATTGTTTCAAATAATC+TGG - Chr3:72946864-72946883 None:intergenic 20.0%
!! ATTTGATTAAATCTTGATGA+TGG + Chr3:72948555-72948574 MsG0380015641.01.T01:three_prime_UTR 20.0%
!! CACAATATTAGTGTAATATA+GGG + Chr3:72946666-72946685 MsG0380015641.01.T01:intron 20.0%
!! CGTAATTATATTGTTTATTG+AGG + Chr3:72948633-72948652 MsG0380015641.01.T01:three_prime_UTR 20.0%
!! CTTATAATTTATAATCCTCA+TGG + Chr3:72948094-72948113 MsG0380015641.01.T01:intron 20.0%
!! GAAGATATTCAATAATCAAT+GGG + Chr3:72947630-72947649 MsG0380015641.01.T01:intron 20.0%
!! TAACGGTTAATTAAGATAAT+TGG + Chr3:72947360-72947379 MsG0380015641.01.T01:intron 20.0%
!! TAGTTTATTTACTTTGGATT+TGG + Chr3:72948518-72948537 MsG0380015641.01.T01:three_prime_UTR 20.0%
!! TATCTTCCCAATAATAATTA+GGG - Chr3:72947617-72947636 None:intergenic 20.0%
!! TCACAATATTAGTGTAATAT+AGG + Chr3:72946665-72946684 MsG0380015641.01.T01:intron 20.0%
!! TTGAATGAAAAACTTAAACT+TGG - Chr3:72946470-72946489 None:intergenic 20.0%
!! TTTAATGATAGGATTTGAAA+CGG + Chr3:72947653-72947672 MsG0380015641.01.T01:intron 20.0%
!!! AATTCCTTAATTTTTGGAAA+TGG + Chr3:72946533-72946552 MsG0380015641.01.T01:intron 20.0%
!!! CAATTTTGCTTTAGATTTTA+GGG + Chr3:72946570-72946589 MsG0380015641.01.T01:intron 20.0%
!!! TCAATTTTGCTTTAGATTTT+AGG + Chr3:72946569-72946588 MsG0380015641.01.T01:intron 20.0%
!!! TTTTTTGAAAGTAAGAATGA+AGG + Chr3:72947464-72947483 MsG0380015641.01.T01:intron 20.0%
!!! TTTTTTTTGACTTTGTGATT+GGG + Chr3:72947704-72947723 MsG0380015641.01.T01:intron 20.0%
! AAAATAGAGGCTAATAATGA+AGG + Chr3:72947431-72947450 MsG0380015641.01.T01:intron 25.0%
! AACACCATTTCCAAAAATTA+AGG - Chr3:72946540-72946559 None:intergenic 25.0%
! AAGGGTTGAATATAAAATAG+AGG + Chr3:72947418-72947437 MsG0380015641.01.T01:intron 25.0%
! ACATAATTACACTAACATGT+TGG - Chr3:72948843-72948862 None:intergenic 25.0%
! CAATGAATTCTTTCATATGA+TGG + Chr3:72948725-72948744 MsG0380015641.01.T01:three_prime_UTR 25.0%
! CTCATAAAAAATCAATCGAA+TGG - Chr3:72948879-72948898 None:intergenic 25.0%
! GGAAGATATTCAATAATCAA+TGG + Chr3:72947629-72947648 MsG0380015641.01.T01:intron 25.0%
! TAGTGTAATTATGTCATGTT+TGG + Chr3:72948849-72948868 MsG0380015641.01.T01:three_prime_UTR 25.0%
! TTCCAAAAATACAGATATAC+CGG - Chr3:72947767-72947786 None:intergenic 25.0%
! TTTGAAGATTTCACTCATTA+AGG - Chr3:72946841-72946860 None:intergenic 25.0%
! TTTGATTAATGAATCTGCTT+AGG + Chr3:72948156-72948175 MsG0380015641.01.T01:intron 25.0%
!! TAATCAATGGGTTTAATGAT+AGG + Chr3:72947642-72947661 MsG0380015641.01.T01:intron 25.0%
!!! GTTTTTTTTGACTTTGTGAT+TGG + Chr3:72947703-72947722 MsG0380015641.01.T01:intron 25.0%
!!! TTTTTTTGACTTTGTGATTG+GGG + Chr3:72947705-72947724 MsG0380015641.01.T01:intron 25.0%
AAAGAGATCTGAGAGTAAAA+AGG - Chr3:72946438-72946457 None:intergenic 30.0%
AACGGTTTAAGAGATTAAGA+AGG + Chr3:72947671-72947690 MsG0380015641.01.T01:intron 30.0%
AAGAGATCTGAGAGTAAAAA+GGG - Chr3:72946437-72946456 None:intergenic 30.0%
ACGGTTTAAGAGATTAAGAA+GGG + Chr3:72947672-72947691 MsG0380015641.01.T01:intron 30.0%
AGAAGAAGAAGAATGAGAAA+TGG - Chr3:72946218-72946237 None:intergenic 30.0%
AGTGTTAACAAACTACCATA+TGG - Chr3:72948130-72948149 None:intergenic 30.0%
ATATACAATCTATGTGGATC+AGG + Chr3:72948263-72948282 MsG0380015641.01.T01:CDS 30.0%
CTATGAATATGGAATTGCAT+TGG + Chr3:72947555-72947574 MsG0380015641.01.T01:intron 30.0%
GGTAGAAGACTGATTAAATA+AGG + Chr3:72947509-72947528 MsG0380015641.01.T01:intron 30.0%
TCCAAAAATACAGATATACC+GGG - Chr3:72947766-72947785 None:intergenic 30.0%
TGACATGTATAACATTGCAT+TGG - Chr3:72948424-72948443 None:intergenic 30.0%
TGGAGAATATACAATCTATG+TGG + Chr3:72948257-72948276 MsG0380015641.01.T01:CDS 30.0%
TGTTTGATTCATGTAACCAT+TGG + Chr3:72947052-72947071 MsG0380015641.01.T01:intron 30.0%
TTAAATAAGGAACGTAAGAG+AGG + Chr3:72947522-72947541 MsG0380015641.01.T01:intron 30.0%
TTCAATAAACCCATGAATCA+TGG - Chr3:72947588-72947607 None:intergenic 30.0%
! AATATGGAATTGCATTGGTA+AGG + Chr3:72947560-72947579 MsG0380015641.01.T01:intron 30.0%
! CTATTCATTTTGTAGTGTGT+TGG + Chr3:72946725-72946744 MsG0380015641.01.T01:intron 30.0%
! GATAATTGGTAATTGGTACT+TGG + Chr3:72947374-72947393 MsG0380015641.01.T01:intron 30.0%
!!! AACCACTCTTTTTGAGATAA+TGG + Chr3:72946621-72946640 MsG0380015641.01.T01:intron 30.0%
!!! GCTTTAGATTTTAGGGTTTA+GGG + Chr3:72946577-72946596 MsG0380015641.01.T01:intron 30.0%
!!! TGCTTTAGATTTTAGGGTTT+AGG + Chr3:72946576-72946595 MsG0380015641.01.T01:intron 30.0%
!!! TTCAAATTTGTTGACCCTTT+TGG + Chr3:72946485-72946504 MsG0380015641.01.T01:intron 30.0%
AAAATACAGATATACCGGGT+CGG - Chr3:72947762-72947781 None:intergenic 35.0%
AATGTTATACATGTCAGAGG+AGG + Chr3:72948428-72948447 MsG0380015641.01.T01:CDS 35.0%
AGAGATCTGAGAGTAAAAAG+GGG - Chr3:72946436-72946455 None:intergenic 35.0%
ATAAACAACAGTAGCAACCA+TGG - Chr3:72948008-72948027 None:intergenic 35.0%
ATCCAAAGCCAATTCAAGAA+TGG - Chr3:72948803-72948822 None:intergenic 35.0%
CTCCATTATCTCAAAAAGAG+TGG - Chr3:72946626-72946645 None:intergenic 35.0%
GAAGTTGAGTGCTATGAATA+TGG + Chr3:72947544-72947563 MsG0380015641.01.T01:intron 35.0%
GAATCGGAAAATGGTAAGAA+CGG - Chr3:72947906-72947925 None:intergenic 35.0%
GGTAGAACAGAACAAGAAAA+GGG + Chr3:72947400-72947419 MsG0380015641.01.T01:intron 35.0%
TATGGAAAATGTTCTCCATG+AGG - Chr3:72948112-72948131 None:intergenic 35.0%
TCAATCTTCATCCTTCACTA+TGG + Chr3:72946253-72946272 MsG0380015641.01.T01:exon 35.0%
TGCAATGTTATACATGTCAG+AGG + Chr3:72948425-72948444 MsG0380015641.01.T01:CDS 35.0%
TGGTAGAACAGAACAAGAAA+AGG + Chr3:72947399-72947418 MsG0380015641.01.T01:intron 35.0%
TTATTGAGGATCATGTGTCT+TGG + Chr3:72948647-72948666 MsG0380015641.01.T01:three_prime_UTR 35.0%
TTGTTGTCTGCAGAAGTAAT+TGG + Chr3:72947488-72947507 MsG0380015641.01.T01:intron 35.0%
! ACCCGGTATATCTGTATTTT+TGG + Chr3:72947762-72947781 MsG0380015641.01.T01:intron 35.0%
! ATATGATGGTTTTCGTTCTG+TGG + Chr3:72948739-72948758 MsG0380015641.01.T01:three_prime_UTR 35.0%
! CATGGAGAACATTTTCCATA+TGG + Chr3:72948112-72948131 MsG0380015641.01.T01:intron 35.0%
! TTCTTACCATTTTCCGATTC+CGG + Chr3:72947906-72947925 MsG0380015641.01.T01:intron 35.0%
! TTGGAAAATGAAGCACCAAT+CGG + Chr3:72947781-72947800 MsG0380015641.01.T01:intron 35.0%
! TTGGTAATTGGTACTTGGTA+TGG + Chr3:72947379-72947398 MsG0380015641.01.T01:intron 35.0%
!!! AAATTCGTTTTTTGCGAACC+GGG + Chr3:72947728-72947747 MsG0380015641.01.T01:intron 35.0%
!!! GAAATTCGTTTTTTGCGAAC+CGG + Chr3:72947727-72947746 MsG0380015641.01.T01:intron 35.0%
AAATACAGATATACCGGGTC+GGG - Chr3:72947761-72947780 None:intergenic 40.0%
AACTCTTGAAGCCATAGTGA+AGG - Chr3:72946267-72946286 None:intergenic 40.0%
AAGAACCCTTTCTGCTTGAA+GGG + Chr3:72946344-72946363 MsG0380015641.01.T01:CDS 40.0%
AAGTTGTGTTCTCAAAGCCA+GGG + Chr3:72948220-72948239 MsG0380015641.01.T01:CDS 40.0%
ATTGGCAAACCTGTCATTAG+AGG - Chr3:72948406-72948425 None:intergenic 40.0%
CAGAAGTTTCATAACCAGCA+CGG - Chr3:72946391-72946410 None:intergenic 40.0%
CCAATTCTTGCATTTGCTTG+AGG - Chr3:72948476-72948495 None:intergenic 40.0%
CCTCAAGCAAATGCAAGAAT+TGG + Chr3:72948473-72948492 MsG0380015641.01.T01:CDS 40.0%
CTCGAGATCCTAAGTAAGAT+CGG + Chr3:72947098-72947117 MsG0380015641.01.T01:intron 40.0%
GCATAGAGCCATTCTTGAAT+TGG + Chr3:72948792-72948811 MsG0380015641.01.T01:three_prime_UTR 40.0%
GGTAAGGTTCCATGATTCAT+GGG + Chr3:72947576-72947595 MsG0380015641.01.T01:intron 40.0%
GTTATTCTCACCCGTTACAA+CGG + Chr3:72948375-72948394 MsG0380015641.01.T01:CDS 40.0%
TCGAGATCCTAAGTAAGATC+GGG + Chr3:72947099-72947118 MsG0380015641.01.T01:intron 40.0%
TGGTAAGGTTCCATGATTCA+TGG + Chr3:72947575-72947594 MsG0380015641.01.T01:intron 40.0%
TTATGCTGGAATGCAAGCAA+AGG + Chr3:72948187-72948206 MsG0380015641.01.T01:CDS 40.0%
! AGCCATTCTTGAATTGGCTT+TGG + Chr3:72948798-72948817 MsG0380015641.01.T01:three_prime_UTR 40.0%
! ATGGAGTATCAGATCTGATC+TGG + Chr3:72946640-72946659 MsG0380015641.01.T01:intron 40.0%
! TGGAAAATGAAGCACCAATC+GGG + Chr3:72947782-72947801 MsG0380015641.01.T01:intron 40.0%
!!! AGATTTTAGGGTTTAGGGTG+TGG + Chr3:72946582-72946601 MsG0380015641.01.T01:intron 40.0%
ACCATGGTAGCAACAACCAA+TGG - Chr3:72947071-72947090 None:intergenic 45.0%
AGGTTGGAAACCCAGAAAAC+CGG - Chr3:72947828-72947847 None:intergenic 45.0%
ATCTGGACCGTAGAATCGTA+TGG - Chr3:72947971-72947990 None:intergenic 45.0%
CAAGAACCCTTTCTGCTTGA+AGG + Chr3:72946343-72946362 MsG0380015641.01.T01:CDS 45.0%
CGTGGAACCATACGATTCTA+CGG + Chr3:72947961-72947980 MsG0380015641.01.T01:intron 45.0%
CTTCAAGCAGAAAGGGTTCT+TGG - Chr3:72946345-72946364 None:intergenic 45.0%
GAAGTTGTGTTCTCAAAGCC+AGG + Chr3:72948219-72948238 MsG0380015641.01.T01:CDS 45.0%
GATCCTAAGTAAGATCGGGA+AGG + Chr3:72947103-72947122 MsG0380015641.01.T01:intron 45.0%
GATCGAGAGTTTGTCTACCA+TGG + Chr3:72947988-72948007 MsG0380015641.01.T01:intron 45.0%
GATCTCGAGTTTGTCTACCA+TGG - Chr3:72947087-72947106 None:intergenic 45.0%
GGAAAATGGTAAGAACGGCT+TGG - Chr3:72947901-72947920 None:intergenic 45.0%
TAGTCTCAGTTCTGTTGCTG+TGG + Chr3:72948680-72948699 MsG0380015641.01.T01:three_prime_UTR 45.0%
TCTGCTATCACTCACATTGC+TGG + Chr3:72946407-72946426 MsG0380015641.01.T01:CDS 45.0%
TCTGGGTTTCCAACCTAACT+CGG + Chr3:72947832-72947851 MsG0380015641.01.T01:intron 45.0%
TGGTAGACAAACTCTCGATC+TGG - Chr3:72947988-72948007 None:intergenic 45.0%
TGTTCTTCCAGCGATGGTTA+TGG + Chr3:72946307-72946326 MsG0380015641.01.T01:CDS 45.0%
TTTCATAACCAGCACGGCAA+GGG - Chr3:72946385-72946404 None:intergenic 45.0%
TTTGTGTGTTCTTCCAGCGA+TGG + Chr3:72946301-72946320 MsG0380015641.01.T01:CDS 45.0%
! ACCATTGGTTGTTGCTACCA+TGG + Chr3:72947067-72947086 MsG0380015641.01.T01:intron 45.0%
! ATGAATCTGCTTAGGTGCTG+AGG + Chr3:72948164-72948183 MsG0380015641.01.T01:intron 45.0%
! GATGGTTTTCGTTCTGTGGA+TGG + Chr3:72948743-72948762 MsG0380015641.01.T01:three_prime_UTR 45.0%
!!! TATATATGAATTTTTAAATT+TGG - Chr3:72947179-72947198 None:intergenic 5.0%
AACGTAGATCCAGCCGAGTT+AGG - Chr3:72947848-72947867 None:intergenic 50.0%
AAGCAGAAAGGGTTCTTGGC+TGG - Chr3:72946341-72946360 None:intergenic 50.0%
ACACGACCCTTCAAGCAGAA+AGG - Chr3:72946353-72946372 None:intergenic 50.0%
ACCCATGAGATCGTGAATCG+GGG + Chr3:72947126-72947145 MsG0380015641.01.T01:intron 50.0%
AGCAGAAAGGGTTCTTGGCT+GGG - Chr3:72946340-72946359 None:intergenic 50.0%
ATGTCAGAGGAGGTTGCTTC+TGG + Chr3:72948438-72948457 MsG0380015641.01.T01:CDS 50.0%
CACGACCCTTCAAGCAGAAA+GGG - Chr3:72946352-72946371 None:intergenic 50.0%
GACCCATGAGATCGTGAATC+GGG + Chr3:72947125-72947144 MsG0380015641.01.T01:intron 50.0%
GGACCCATGAGATCGTGAAT+CGG + Chr3:72947124-72947143 MsG0380015641.01.T01:intron 50.0%
GGGTGAGAATAACACGTGCT+TGG - Chr3:72948368-72948387 None:intergenic 50.0%
GGTCCTTCCCGATCTTACTT+AGG - Chr3:72947109-72947128 None:intergenic 50.0%
GGTTGGAAACCCAGAAAACC+GGG - Chr3:72947827-72947846 None:intergenic 50.0%
GTTTCATAACCAGCACGGCA+AGG - Chr3:72946386-72946405 None:intergenic 50.0%
TAGAGGCCATGCCGTTGTAA+CGG - Chr3:72948389-72948408 None:intergenic 50.0%
TAGATCCAGCCGAGTTAGGT+TGG - Chr3:72947844-72947863 None:intergenic 50.0%
TGAATCGGGGGATCGTAACA+CGG + Chr3:72947139-72947158 MsG0380015641.01.T01:intron 50.0%
TTTCGCTGCAACTACGCTCA+GGG - Chr3:72948329-72948348 None:intergenic 50.0%
!! CTTAGGTGCTGAGGTTATGC+TGG + Chr3:72948173-72948192 MsG0380015641.01.T01:intron 50.0%
AACCCAGAAAACCGGGTTCG+CGG - Chr3:72947820-72947839 None:intergenic 55.0%
ACGGCATGGCCTCTAATGAC+AGG + Chr3:72948394-72948413 MsG0380015641.01.T01:CDS 55.0%
AGAGGCCATGCCGTTGTAAC+GGG - Chr3:72948388-72948407 None:intergenic 55.0%
AGGTGGCCGGAATCGGAAAA+TGG - Chr3:72947915-72947934 None:intergenic 55.0%
CCAGGGAAGACTGATGCAAC+TGG + Chr3:72948237-72948256 MsG0380015641.01.T01:CDS 55.0%
CCAGTTGCATCAGTCTTCCC+TGG - Chr3:72948240-72948259 None:intergenic 55.0%
CCCATGAGATCGTGAATCGG+GGG + Chr3:72947127-72947146 MsG0380015641.01.T01:intron 55.0%
CCCCCGATTCACGATCTCAT+GGG - Chr3:72947130-72947149 None:intergenic 55.0%
CCTATGAGCACGAAGAGGTC+AGG + Chr3:72947932-72947951 MsG0380015641.01.T01:intron 55.0%
CCTGACCTCTTCGTGCTCAT+AGG - Chr3:72947935-72947954 None:intergenic 55.0%
CGAATGGCCATAACCATCGC+TGG - Chr3:72946317-72946336 None:intergenic 55.0%
CTTTCGCTGCAACTACGCTC+AGG - Chr3:72948330-72948349 None:intergenic 55.0%
GAAGAGGTCAGGCAAGATCG+TGG + Chr3:72947943-72947962 MsG0380015641.01.T01:intron 55.0%
GACCTCTTCGTGCTCATAGG+TGG - Chr3:72947932-72947951 None:intergenic 55.0%
GGTTTCCAACCTAACTCGGC+TGG + Chr3:72947836-72947855 MsG0380015641.01.T01:intron 55.0%
TCCCCCGATTCACGATCTCA+TGG - Chr3:72947131-72947150 None:intergenic 55.0%
TCTCACCCGTTACAACGGCA+TGG + Chr3:72948380-72948399 MsG0380015641.01.T01:CDS 55.0%
TCTTCGTGCTCATAGGTGGC+CGG - Chr3:72947928-72947947 None:intergenic 55.0%
TGCTCATAGGTGGCCGGAAT+CGG - Chr3:72947922-72947941 None:intergenic 55.0%
!! AGTTGCAGCGAAAGAGCACC+TGG + Chr3:72948336-72948355 MsG0380015641.01.T01:CDS 55.0%
!! GTTGCAGCGAAAGAGCACCT+GGG + Chr3:72948337-72948356 MsG0380015641.01.T01:CDS 55.0%
ACCCAGAAAACCGGGTTCGC+GGG - Chr3:72947819-72947838 None:intergenic 60.0%
AGGGTTCTTGGCTGGGCGAA+TGG - Chr3:72946333-72946352 None:intergenic 60.0%
GGCCACCTATGAGCACGAAG+AGG + Chr3:72947927-72947946 MsG0380015641.01.T01:intron 60.0%
GGGTCGTTTCGTGACCCGAT+TGG - Chr3:72947799-72947818 None:intergenic 60.0%
GTATGTGACCCTTGCCGTGC+TGG + Chr3:72946374-72946393 MsG0380015641.01.T01:CDS 60.0%
! ACCCGCGAACCCGGTTTTCT+GGG + Chr3:72947815-72947834 MsG0380015641.01.T01:intron 60.0%
! GGTTGCTTCTGGCTGTGCTG+AGG + Chr3:72948449-72948468 MsG0380015641.01.T01:CDS 60.0%
ACACGTGCTTGGTCACGCCC+AGG - Chr3:72948357-72948376 None:intergenic 65.0%
ACCGCGTCCACGACTTTGCG+CGG + Chr3:72947871-72947890 MsG0380015641.01.T01:intron 65.0%
CACGAAACGACCCGCGAACC+CGG + Chr3:72947806-72947825 MsG0380015641.01.T01:intron 65.0%
TGGATCGCCGCGCAAAGTCG+TGG - Chr3:72947881-72947900 None:intergenic 65.0%
! GACCCGCGAACCCGGTTTTC+TGG + Chr3:72947814-72947833 MsG0380015641.01.T01:intron 65.0%
ACCGGGTCACGAACCCGACC+CGG + Chr3:72947745-72947764 MsG0380015641.01.T01:intron 70.0%
ACCGGGTCGGGTTCGTGACC+CGG - Chr3:72947749-72947768 None:intergenic 70.0%
GCCGCGCAAAGTCGTGGACG+CGG - Chr3:72947875-72947894 None:intergenic 70.0%
GCGCAAAGTCGTGGACGCGG+TGG - Chr3:72947872-72947891 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 72946162 72948910 72946162 ID=MsG0380015641.01;Name=MsG0380015641.01
Chr3 mRNA 72946162 72948910 72946162 ID=MsG0380015641.01.T01;Parent=MsG0380015641.01;Name=MsG0380015641.01.T01;_AED=0.32;_eAED=0.32;_QI=110|1|1|1|1|1|2|401|162
Chr3 exon 72946162 72946428 72946162 ID=MsG0380015641.01.T01:exon:672;Parent=MsG0380015641.01.T01
Chr3 exon 72948178 72948910 72948178 ID=MsG0380015641.01.T01:exon:673;Parent=MsG0380015641.01.T01
Chr3 five_prime_UTR 72946162 72946271 72946162 ID=MsG0380015641.01.T01:five_prime_utr;Parent=MsG0380015641.01.T01
Chr3 CDS 72946272 72946428 72946272 ID=MsG0380015641.01.T01:cds;Parent=MsG0380015641.01.T01
Chr3 CDS 72948178 72948509 72948178 ID=MsG0380015641.01.T01:cds;Parent=MsG0380015641.01.T01
Chr3 three_prime_UTR 72948510 72948910 72948510 ID=MsG0380015641.01.T01:three_prime_utr;Parent=MsG0380015641.01.T01
Gene Sequence

>MsG0380015641.01.T01

ATGGCTTCAAGAGTTGCTTTTTTGTTGTTTTTGTGTGTTCTTCCAGCGATGGTTATGGCCATTCGCCCAGCCAAGAACCCTTTCTGCTTGAAGGGTCGTGTTGTATGTGACCCTTGCCGTGCTGGTTATGAAACTTCTGCTATCACTCACATTGCTGGTGCTGAGGTTATGCTGGAATGCAAGCAAAGGAACAGCAACGAAGTTGTGTTCTCAAAGCCAGGGAAGACTGATGCAACTGGAGAATATACAATCTATGTGGATCAGGATCGTGCAGATGAAGTGTGTGATGTGAAGCTAATAAACAGCCCTGAGCGTAGTTGCAGCGAAAGAGCACCTGGGCGTGACCAAGCACGTGTTATTCTCACCCGTTACAACGGCATGGCCTCTAATGACAGGTTTGCCAATGCAATGTTATACATGTCAGAGGAGGTTGCTTCTGGCTGTGCTGAGGTCCTCAAGCAAATGCAAGAATTGGATGAAGAGAATTAA
Protein sequence

>MsG0380015641.01.T01

MASRVAFLLFLCVLPAMVMAIRPAKNPFCLKGRVVCDPCRAGYETSAITHIAGAEVMLECKQRNSNEVVFSKPGKTDATGEYTIYVDQDRADEVCDVKLINSPERSCSERAPGRDQARVILTRYNGMASNDRFANAMLYMSEEVASGCAEVLKQMQELDEEN*