Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044081.01.T01 | KEH19335.1 | 70.813 | 209 | 51 | 3 | 7 | 206 | 110 | 317 | 9.45E-92 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044081.01.T01 | Q9SAL0 | 75.362 | 138 | 34 | 0 | 69 | 206 | 179 | 316 | 2.97E-68 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044081.01.T01 | A0A072U0M6 | 70.813 | 209 | 51 | 3 | 7 | 206 | 110 | 317 | 4.51e-92 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000178.01 | MsG0880044081.01 | 0.846803 | 1.726016e-59 | 3.006256e-56 |
| MsG0180000470.01 | MsG0880044081.01 | 0.802476 | 5.510740e-49 | 2.702009e-46 |
| MsG0180000526.01 | MsG0880044081.01 | 0.803782 | 2.958259e-49 | 1.499781e-46 |
| MsG0180001172.01 | MsG0880044081.01 | 0.803959 | 2.718138e-49 | 1.384380e-46 |
| MsG0880044079.01 | MsG0880044081.01 | 0.913308 | 7.152418e-84 | 1.680634e-79 |
| MsG0880044080.01 | MsG0880044081.01 | 0.944864 | 8.880628e-104 | 1.304797e-98 |
| MsG0880044081.01 | MsG0880044085.01 | 0.855269 | 7.063617e-62 | 1.621610e-58 |
| MsG0180003920.01 | MsG0880044081.01 | 0.810093 | 1.368214e-50 | 8.172876e-48 |
| MsG0180004149.01 | MsG0880044081.01 | 0.831276 | 1.830112e-55 | 1.976335e-52 |
| MsG0180004463.01 | MsG0880044081.01 | 0.801761 | 7.730850e-49 | 3.722070e-46 |
| MsG0180006000.01 | MsG0880044081.01 | 0.803661 | 3.134262e-49 | 1.584018e-46 |
| MsG0880043614.01 | MsG0880044081.01 | 0.808691 | 2.734818e-50 | 1.573997e-47 |
| MsG0280010778.01 | MsG0880044081.01 | 0.803933 | 2.751949e-49 | 1.400713e-46 |
| MsG0280011014.01 | MsG0880044081.01 | 0.801450 | 8.951471e-49 | 4.276218e-46 |
| MsG0680033412.01 | MsG0880044081.01 | 0.806114 | 9.625621e-50 | 5.181540e-47 |
| MsG0480019020.01 | MsG0880044081.01 | 0.805383 | 1.370541e-49 | 7.240585e-47 |
| MsG0480020909.01 | MsG0880044081.01 | 0.803881 | 2.820790e-49 | 1.433805e-46 |
| MsG0480022549.01 | MsG0880044081.01 | 0.803111 | 4.073610e-49 | 2.029888e-46 |
| MsG0480023163.01 | MsG0880044081.01 | 0.822594 | 2.179131e-53 | 1.832273e-50 |
| MsG0580024382.01 | MsG0880044081.01 | 0.830139 | 3.474245e-55 | 3.628944e-52 |
| MsG0380015566.01 | MsG0880044081.01 | 0.817720 | 2.848509e-52 | 2.090572e-49 |
| MsG0380015720.01 | MsG0880044081.01 | 0.803176 | 3.950141e-49 | 1.971728e-46 |
| MsG0380015808.01 | MsG0880044081.01 | 0.839583 | 1.452885e-57 | 2.015247e-54 |
| MsG0380016004.01 | MsG0880044081.01 | 0.814548 | 1.456866e-51 | 9.804704e-49 |
| MsG0380016140.01 | MsG0880044081.01 | 0.809268 | 2.058075e-50 | 1.202891e-47 |
| MsG0380016847.01 | MsG0880044081.01 | 0.813496 | 2.485174e-51 | 1.625581e-48 |
| MsG0380016909.01 | MsG0880044081.01 | 0.805561 | 1.257742e-49 | 6.675017e-47 |
| MsG0380016910.01 | MsG0880044081.01 | 0.830340 | 3.103591e-55 | 3.260648e-52 |
| MsG0480018128.01 | MsG0880044081.01 | 0.836890 | 7.176319e-57 | 9.167844e-54 |
| MsG0280007547.01 | MsG0880044081.01 | 0.815277 | 1.004057e-51 | 6.891891e-49 |
| MsG0780038386.01 | MsG0880044081.01 | 0.810225 | 1.281297e-50 | 7.679847e-48 |
| MsG0780038391.01 | MsG0880044081.01 | 0.808711 | 2.707836e-50 | 1.559255e-47 |
| MsG0780038401.01 | MsG0880044081.01 | 0.829006 | 6.552344e-55 | 6.620912e-52 |
| MsG0780039527.01 | MsG0880044081.01 | 0.839628 | 1.413974e-57 | 1.964024e-54 |
| MsG0780040057.01 | MsG0880044081.01 | 0.809307 | 2.018781e-50 | 1.181143e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044081.01.T01 | MTR_8g447220 | 70.813 | 209 | 51 | 3 | 7 | 206 | 110 | 317 | 1.14e-95 | 281 |
| MsG0880044081.01.T01 | MTR_8g447220 | 98.551 | 138 | 2 | 0 | 69 | 206 | 180 | 317 | 1.37e-94 | 281 |
| MsG0880044081.01.T01 | MTR_2g063857 | 80.435 | 138 | 27 | 0 | 69 | 206 | 195 | 332 | 3.66e-75 | 231 |
| MsG0880044081.01.T01 | MTR_2g063857 | 80.435 | 138 | 27 | 0 | 69 | 206 | 195 | 332 | 5.82e-75 | 232 |
| MsG0880044081.01.T01 | MTR_2g063907 | 79.433 | 141 | 23 | 2 | 69 | 206 | 181 | 318 | 2.82e-72 | 225 |
| MsG0880044081.01.T01 | MTR_6g092020 | 77.536 | 138 | 28 | 1 | 69 | 206 | 174 | 308 | 4.50e-71 | 221 |
| MsG0880044081.01.T01 | MTR_6g092100 | 78.261 | 138 | 28 | 1 | 69 | 206 | 129 | 264 | 5.73e-71 | 218 |
| MsG0880044081.01.T01 | MTR_2g063843 | 77.536 | 138 | 28 | 1 | 69 | 206 | 187 | 321 | 8.27e-71 | 221 |
| MsG0880044081.01.T01 | MTR_6g021730 | 72.464 | 138 | 38 | 0 | 69 | 206 | 227 | 364 | 6.85e-67 | 213 |
| MsG0880044081.01.T01 | MTR_3g086520 | 71.739 | 138 | 39 | 0 | 69 | 206 | 222 | 359 | 1.97e-65 | 209 |
| MsG0880044081.01.T01 | MTR_3g086520 | 71.739 | 138 | 39 | 0 | 69 | 206 | 225 | 362 | 1.98e-65 | 209 |
| MsG0880044081.01.T01 | MTR_3g086520 | 71.739 | 138 | 39 | 0 | 69 | 206 | 225 | 362 | 1.98e-65 | 209 |
| MsG0880044081.01.T01 | MTR_7g033100 | 71.739 | 138 | 39 | 0 | 69 | 206 | 207 | 344 | 3.54e-65 | 206 |
| MsG0880044081.01.T01 | MTR_7g033100 | 71.739 | 138 | 39 | 0 | 69 | 206 | 207 | 344 | 6.65e-65 | 207 |
| MsG0880044081.01.T01 | MTR_3g075530 | 70.290 | 138 | 41 | 0 | 69 | 206 | 195 | 332 | 8.73e-63 | 201 |
| MsG0880044081.01.T01 | MTR_8g089670 | 65.734 | 143 | 49 | 0 | 64 | 206 | 227 | 369 | 2.29e-62 | 201 |
| MsG0880044081.01.T01 | MTR_3g096520 | 68.382 | 136 | 43 | 0 | 69 | 204 | 208 | 343 | 4.25e-61 | 197 |
| MsG0880044081.01.T01 | MTR_3g096520 | 68.382 | 136 | 43 | 0 | 69 | 204 | 208 | 343 | 4.33e-61 | 197 |
| MsG0880044081.01.T01 | MTR_3g096520 | 68.382 | 136 | 43 | 0 | 69 | 204 | 225 | 360 | 5.71e-61 | 197 |
| MsG0880044081.01.T01 | MTR_7g081160 | 58.451 | 142 | 54 | 3 | 69 | 206 | 114 | 254 | 4.07e-45 | 157 |
| MsG0880044081.01.T01 | MTR_7g081170 | 56.667 | 90 | 35 | 2 | 69 | 157 | 154 | 240 | 7.95e-29 | 108 |
| MsG0880044081.01.T01 | MTR_2g063877 | 68.254 | 63 | 10 | 2 | 69 | 131 | 48 | 100 | 2.99e-18 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044081.01.T01 | AT1G79380 | 75.362 | 138 | 34 | 0 | 69 | 206 | 179 | 316 | 3.03e-69 | 217 |
| MsG0880044081.01.T01 | AT1G67800 | 71.739 | 138 | 39 | 0 | 69 | 206 | 193 | 330 | 6.49e-67 | 211 |
| MsG0880044081.01.T01 | AT1G67800 | 71.739 | 138 | 39 | 0 | 69 | 206 | 193 | 330 | 6.49e-67 | 211 |
| MsG0880044081.01.T01 | AT1G67800 | 71.739 | 138 | 39 | 0 | 69 | 206 | 193 | 330 | 6.49e-67 | 211 |
| MsG0880044081.01.T01 | AT1G67800 | 71.739 | 138 | 39 | 0 | 69 | 206 | 193 | 330 | 6.49e-67 | 211 |
| MsG0880044081.01.T01 | AT1G67800 | 71.739 | 138 | 39 | 0 | 69 | 206 | 213 | 350 | 7.13e-67 | 211 |
| MsG0880044081.01.T01 | AT1G67800 | 71.739 | 138 | 39 | 0 | 69 | 206 | 213 | 350 | 1.65e-66 | 211 |
| MsG0880044081.01.T01 | AT3G01650 | 68.841 | 138 | 43 | 0 | 69 | 206 | 256 | 393 | 1.50e-61 | 199 |
| MsG0880044081.01.T01 | AT3G01650 | 68.841 | 138 | 43 | 0 | 69 | 206 | 256 | 393 | 1.50e-61 | 199 |
| MsG0880044081.01.T01 | AT5G63970 | 69.630 | 135 | 41 | 0 | 69 | 203 | 137 | 271 | 1.68e-61 | 196 |
| MsG0880044081.01.T01 | AT5G63970 | 69.630 | 135 | 41 | 0 | 69 | 203 | 137 | 271 | 1.68e-61 | 196 |
| MsG0880044081.01.T01 | AT5G14420 | 68.116 | 138 | 44 | 0 | 69 | 206 | 222 | 359 | 4.40e-61 | 197 |
| MsG0880044081.01.T01 | AT5G14420 | 68.116 | 138 | 44 | 0 | 69 | 206 | 222 | 359 | 4.40e-61 | 197 |
| MsG0880044081.01.T01 | AT5G14420 | 68.116 | 138 | 44 | 0 | 69 | 206 | 222 | 359 | 4.40e-61 | 197 |
| MsG0880044081.01.T01 | AT5G14420 | 68.116 | 138 | 44 | 0 | 69 | 206 | 222 | 359 | 4.40e-61 | 197 |
Find 50 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCGTTCCAACACCATATA+TGG | 0.175990 | 8:+35324169 | MsG0880044081.01.T01:CDS |
| GCTCAAGGGCTGCTTTATAT+TGG | 0.283230 | 8:-35325250 | None:intergenic |
| GCCCTTGAGCTTGGATTACT+TGG | 0.292933 | 8:+35325263 | MsG0880044081.01.T01:CDS |
| ATATCCTCTTTCTATTGTTC+TGG | 0.309531 | 8:+35324963 | MsG0880044081.01.T01:CDS |
| CGGTATCCGTCCACTTGGTT+TGG | 0.320566 | 8:+35324237 | MsG0880044081.01.T01:CDS |
| CTCTTAAAGTTTACTAATGT+TGG | 0.352866 | 8:-35324379 | None:intergenic |
| CCTCAACATTGAAGTCATAT+TGG | 0.359367 | 8:-35324277 | None:intergenic |
| ATGGGTTCGTGTAAAGTCTT+AGG | 0.371285 | 8:+35324188 | MsG0880044081.01.T01:CDS |
| ATATGGTGTTGGAACGAATT+GGG | 0.379354 | 8:-35324165 | None:intergenic |
| ACTTTACACGAACCCATATA+TGG | 0.383779 | 8:-35324182 | None:intergenic |
| TGGAGTTGGTGATGGACCTT+GGG | 0.408112 | 8:+35324987 | MsG0880044081.01.T01:CDS |
| ACTACGAAGGTCACAAGATA+TGG | 0.410884 | 8:+35324647 | MsG0880044081.01.T01:intron |
| TATATGGTGTTGGAACGAAT+TGG | 0.422250 | 8:-35324166 | None:intergenic |
| CCTCTTTCTATTGTTCTGGT+TGG | 0.434679 | 8:+35324967 | MsG0880044081.01.T01:CDS |
| TTGGAGTTGGTGATGGACCT+TGG | 0.437479 | 8:+35324986 | MsG0880044081.01.T01:CDS |
| CAATAACCAACACATGGAAT+TGG | 0.438745 | 8:-35324498 | None:intergenic |
| TCCGTCCACTTGGTTTGGCT+CGG | 0.441917 | 8:+35324242 | MsG0880044081.01.T01:CDS |
| TTTATTGTCTTCTCTTCTTG+AGG | 0.447554 | 8:-35324695 | None:intergenic |
| TCTATTGTTCTGGTTGGAGT+TGG | 0.452127 | 8:+35324973 | MsG0880044081.01.T01:CDS |
| CCCTTGAGCTTGGATTACTT+GGG | 0.466955 | 8:+35325264 | MsG0880044081.01.T01:CDS |
| TATAAAGCAGCCCTTGAGCT+TGG | 0.469009 | 8:+35325254 | MsG0880044081.01.T01:CDS |
| GTTCTGGTTGGAGTTGGTGA+TGG | 0.484054 | 8:+35324979 | MsG0880044081.01.T01:CDS |
| GCCTTCGGTATCCGTCCACT+TGG | 0.486335 | 8:+35324232 | MsG0880044081.01.T01:CDS |
| TTCGTTCCAACACCATATAT+GGG | 0.489192 | 8:+35324170 | MsG0880044081.01.T01:CDS |
| TTAGTAAACTTTAAGAGCCA+TGG | 0.491358 | 8:+35324385 | MsG0880044081.01.T01:CDS |
| TCTATTGCAGCCTCGATCAC+TGG | 0.498733 | 8:-35324454 | None:intergenic |
| CACGAACCCATATATGGTGT+TGG | 0.499340 | 8:-35324176 | None:intergenic |
| TATTGTGAGAGCTTTGCCTT+CGG | 0.500144 | 8:+35324217 | MsG0880044081.01.T01:CDS |
| GGTTATTGTTGCAGATGGCC+AGG | 0.517879 | 8:+35324513 | MsG0880044081.01.T01:CDS |
| AGCAAACATTTATTAAGCCA+TGG | 0.520320 | 8:-35324402 | None:intergenic |
| GTGTTGGTTATTGTTGCAGA+TGG | 0.521064 | 8:+35324508 | MsG0880044081.01.T01:CDS |
| CAATATGACTTCAATGTTGA+GGG | 0.524643 | 8:+35324278 | MsG0880044081.01.T01:CDS |
| ATCACTGGTGCATATGAAGT+TGG | 0.534886 | 8:-35324439 | None:intergenic |
| ACAAGATATGGCAACAATGA+AGG | 0.539840 | 8:+35324659 | MsG0880044081.01.T01:CDS |
| TCATGGCCAATTCCATGTGT+TGG | 0.540158 | 8:+35324492 | MsG0880044081.01.T01:CDS |
| CCAATATGACTTCAATGTTG+AGG | 0.544281 | 8:+35324277 | MsG0880044081.01.T01:CDS |
| CCAACCAGAACAATAGAAAG+AGG | 0.544627 | 8:-35324967 | None:intergenic |
| ACCCAAGTAATCCAAGCTCA+AGG | 0.545582 | 8:-35325265 | None:intergenic |
| GACATTGTTGAGAAAACTCA+TGG | 0.547591 | 8:+35324475 | MsG0880044081.01.T01:CDS |
| AAATTGTCGAAATCGCGTGC+AGG | 0.550617 | 8:-35325039 | None:intergenic |
| TAAAAGCAATAGTTGATGCC+AGG | 0.555213 | 8:+35324714 | MsG0880044081.01.T01:CDS |
| AGGGCTGCTTTATATTGGAA+AGG | 0.572206 | 8:-35325245 | None:intergenic |
| CTGCAACAATAACCAACACA+TGG | 0.572509 | 8:-35324504 | None:intergenic |
| TATGGTGTTGGAACGAATTG+GGG | 0.580905 | 8:-35324164 | None:intergenic |
| CCCAAGTAATCCAAGCTCAA+GGG | 0.605458 | 8:-35325264 | None:intergenic |
| TTCATATGCACCAGTGATCG+AGG | 0.608412 | 8:+35324444 | MsG0880044081.01.T01:CDS |
| AGATATGGCAACAATGAAGG+TGG | 0.609743 | 8:+35324662 | MsG0880044081.01.T01:CDS |
| TCCGAGCCAAACCAAGTGGA+CGG | 0.616450 | 8:-35324243 | None:intergenic |
| CTAATCCGAGCCAAACCAAG+TGG | 0.652436 | 8:-35324247 | None:intergenic |
| ACCAAGTGGACGGATACCGA+AGG | 0.687983 | 8:-35324233 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAATACAACTAT+GGG | - | Chr8:35324620-35324639 | None:intergenic | 10.0% |
| !! | AAAAATGCTTTAATATAACT+AGG | - | Chr8:35325124-35325143 | None:intergenic | 15.0% |
| !! | AAAATTAATGTTTGATTAAG+CGG | - | Chr8:35324914-35324933 | None:intergenic | 15.0% |
| !! | CAAATAAAATAATACAACTA+TGG | - | Chr8:35324621-35324640 | None:intergenic | 15.0% |
| !!! | CATAGTTGTATTATTTTATT+TGG | + | Chr8:35324619-35324638 | MsG0880044081.01.T01:intron | 15.0% |
| !! | AAAGGAATTATCAACAAAAA+TGG | + | Chr8:35324820-35324839 | MsG0880044081.01.T01:intron | 20.0% |
| !!! | AAAAACAAAAAGTATATACC+TGG | - | Chr8:35324534-35324553 | None:intergenic | 20.0% |
| !!! | CTTTTTGTTTTTTTGTTGTA+AGG | + | Chr8:35324542-35324561 | MsG0880044081.01.T01:intron | 20.0% |
| ! | ATGATCTTGATGAGTATTTA+AGG | - | Chr8:35324770-35324789 | None:intergenic | 25.0% |
| ! | ATGATTTATTCCACAAAATG+AGG | - | Chr8:35324331-35324350 | None:intergenic | 25.0% |
| ! | CTCTTAAAGTTTACTAATGT+TGG | - | Chr8:35324382-35324401 | None:intergenic | 25.0% |
| ! | TTGTGGAATAAATCATAGAA+TGG | + | Chr8:35324335-35324354 | MsG0880044081.01.T01:intron | 25.0% |
| !! | ATCAATTTTCCATATTTACC+TGG | - | Chr8:35324735-35324754 | None:intergenic | 25.0% |
| !!! | AATGTTTGCTTTTTGTTTCT+AGG | + | Chr8:35324415-35324434 | MsG0880044081.01.T01:CDS | 25.0% |
| AGCAAACATTTATTAAGCCA+TGG | - | Chr8:35324405-35324424 | None:intergenic | 30.0% | |
| ATATCCTCTTTCTATTGTTC+TGG | + | Chr8:35324963-35324982 | MsG0880044081.01.T01:CDS | 30.0% | |
| ATGTTGGTACTGCAAATTAA+CGG | - | Chr8:35324366-35324385 | None:intergenic | 30.0% | |
| CAATATGACTTCAATGTTGA+GGG | + | Chr8:35324278-35324297 | MsG0880044081.01.T01:CDS | 30.0% | |
| TAATACAACTATGGGAAAGT+TGG | - | Chr8:35324612-35324631 | None:intergenic | 30.0% | |
| TTAATGTTTGATTAAGCGGT+TGG | - | Chr8:35324910-35324929 | None:intergenic | 30.0% | |
| TTTATTGTCTTCTCTTCTTG+AGG | - | Chr8:35324698-35324717 | None:intergenic | 30.0% | |
| ! | TTAGTAAACTTTAAGAGCCA+TGG | + | Chr8:35324385-35324404 | MsG0880044081.01.T01:CDS | 30.0% |
| !! | TTATTTGGTTTGAACTACGA+AGG | + | Chr8:35324634-35324653 | MsG0880044081.01.T01:intron | 30.0% |
| !!! | AACTTTTTCATATCTTCCCA+AGG | - | Chr8:35325006-35325025 | None:intergenic | 30.0% |
| !!! | ATTTTCAGGTTACAGCAAAT+CGG | + | Chr8:35325058-35325077 | MsG0880044081.01.T01:intron | 30.0% |
| !!! | TGTTTTTTTGTTGTAAGGCT+GGG | + | Chr8:35324547-35324566 | MsG0880044081.01.T01:intron | 30.0% |
| !!! | TTGTTTTTTTGTTGTAAGGC+TGG | + | Chr8:35324546-35324565 | MsG0880044081.01.T01:intron | 30.0% |
| ACAAGATATGGCAACAATGA+AGG | + | Chr8:35324659-35324678 | MsG0880044081.01.T01:CDS | 35.0% | |
| ACTTTACACGAACCCATATA+TGG | - | Chr8:35324185-35324204 | None:intergenic | 35.0% | |
| ATTCGTTCCAACACCATATA+TGG | + | Chr8:35324169-35324188 | MsG0880044081.01.T01:CDS | 35.0% | |
| CAATAACCAACACATGGAAT+TGG | - | Chr8:35324501-35324520 | None:intergenic | 35.0% | |
| CCAATATGACTTCAATGTTG+AGG | + | Chr8:35324277-35324296 | MsG0880044081.01.T01:CDS | 35.0% | |
| CCTCAACATTGAAGTCATAT+TGG | - | Chr8:35324280-35324299 | None:intergenic | 35.0% | |
| GACATTGTTGAGAAAACTCA+TGG | + | Chr8:35324475-35324494 | MsG0880044081.01.T01:CDS | 35.0% | |
| TCCACAAAATGAGGAATCAT+AGG | - | Chr8:35324322-35324341 | None:intergenic | 35.0% | |
| TGTTGGTACTGCAAATTAAC+GGG | - | Chr8:35324365-35324384 | None:intergenic | 35.0% | |
| TTCGTTCCAACACCATATAT+GGG | + | Chr8:35324170-35324189 | MsG0880044081.01.T01:CDS | 35.0% | |
| ! | ACCTATGATTCCTCATTTTG+TGG | + | Chr8:35324318-35324337 | MsG0880044081.01.T01:intron | 35.0% |
| ! | ATATGGTGTTGGAACGAATT+GGG | - | Chr8:35324168-35324187 | None:intergenic | 35.0% |
| ! | TAAAAGCAATAGTTGATGCC+AGG | + | Chr8:35324714-35324733 | MsG0880044081.01.T01:CDS | 35.0% |
| ! | TAGTTGATGCCAGGTAAATA+TGG | + | Chr8:35324723-35324742 | MsG0880044081.01.T01:intron | 35.0% |
| ! | TATATGGTGTTGGAACGAAT+TGG | - | Chr8:35324169-35324188 | None:intergenic | 35.0% |
| !!! | AATTCCTTTTTTTCCCAGAG+CGG | - | Chr8:35324809-35324828 | None:intergenic | 35.0% |
| ACTACGAAGGTCACAAGATA+TGG | + | Chr8:35324647-35324666 | MsG0880044081.01.T01:intron | 40.0% | |
| AGATATGGCAACAATGAAGG+TGG | + | Chr8:35324662-35324681 | MsG0880044081.01.T01:CDS | 40.0% | |
| ATCACTGGTGCATATGAAGT+TGG | - | Chr8:35324442-35324461 | None:intergenic | 40.0% | |
| ATGGGTTCGTGTAAAGTCTT+AGG | + | Chr8:35324188-35324207 | MsG0880044081.01.T01:CDS | 40.0% | |
| CAGTAAAATGAATCCGCTCT+GGG | + | Chr8:35324793-35324812 | MsG0880044081.01.T01:intron | 40.0% | |
| CCAACCAGAACAATAGAAAG+AGG | - | Chr8:35324970-35324989 | None:intergenic | 40.0% | |
| CCTCTTTCTATTGTTCTGGT+TGG | + | Chr8:35324967-35324986 | MsG0880044081.01.T01:CDS | 40.0% | |
| CTGCAACAATAACCAACACA+TGG | - | Chr8:35324507-35324526 | None:intergenic | 40.0% | |
| GTTGGTACTGCAAATTAACG+GGG | - | Chr8:35324364-35324383 | None:intergenic | 40.0% | |
| TATTGTGAGAGCTTTGCCTT+CGG | + | Chr8:35324217-35324236 | MsG0880044081.01.T01:CDS | 40.0% | |
| ! | AAAGCAGCTTCTTTTGCAGA+AGG | - | Chr8:35325200-35325219 | None:intergenic | 40.0% |
| ! | AAGCAGCTTCTTTTGCAGAA+GGG | - | Chr8:35325199-35325218 | None:intergenic | 40.0% |
| ! | ACGCGATTTCGACAATTTTC+AGG | + | Chr8:35325044-35325063 | MsG0880044081.01.T01:CDS | 40.0% |
| ! | AGGGCTGCTTTATATTGGAA+AGG | - | Chr8:35325248-35325267 | None:intergenic | 40.0% |
| ! | TATGGTGTTGGAACGAATTG+GGG | - | Chr8:35324167-35324186 | None:intergenic | 40.0% |
| ! | TCTATTGTTCTGGTTGGAGT+TGG | + | Chr8:35324973-35324992 | MsG0880044081.01.T01:CDS | 40.0% |
| !! | GTGTTGGTTATTGTTGCAGA+TGG | + | Chr8:35324508-35324527 | MsG0880044081.01.T01:CDS | 40.0% |
| AAATTGTCGAAATCGCGTGC+AGG | - | Chr8:35325042-35325061 | None:intergenic | 45.0% | |
| ACCCAAGTAATCCAAGCTCA+AGG | - | Chr8:35325268-35325287 | None:intergenic | 45.0% | |
| CACGAACCCATATATGGTGT+TGG | - | Chr8:35324179-35324198 | None:intergenic | 45.0% | |
| CCCAAGTAATCCAAGCTCAA+GGG | - | Chr8:35325267-35325286 | None:intergenic | 45.0% | |
| CCCTTGAGCTTGGATTACTT+GGG | + | Chr8:35325264-35325283 | MsG0880044081.01.T01:CDS | 45.0% | |
| GCAGTAAAATGAATCCGCTC+TGG | + | Chr8:35324792-35324811 | MsG0880044081.01.T01:intron | 45.0% | |
| TATAAAGCAGCCCTTGAGCT+TGG | + | Chr8:35325254-35325273 | MsG0880044081.01.T01:CDS | 45.0% | |
| TCATGGCCAATTCCATGTGT+TGG | + | Chr8:35324492-35324511 | MsG0880044081.01.T01:CDS | 45.0% | |
| TTCATATGCACCAGTGATCG+AGG | + | Chr8:35324444-35324463 | MsG0880044081.01.T01:CDS | 45.0% | |
| ! | GCTCAAGGGCTGCTTTATAT+TGG | - | Chr8:35325253-35325272 | None:intergenic | 45.0% |
| ! | TTTTGCTCTCGCTGCTCTTA+TGG | + | Chr8:35325217-35325236 | MsG0880044081.01.T01:CDS | 45.0% |
| !! | GAATCCGCTCTGGGAAAAAA+AGG | + | Chr8:35324802-35324821 | MsG0880044081.01.T01:intron | 45.0% |
| CTAATCCGAGCCAAACCAAG+TGG | - | Chr8:35324250-35324269 | None:intergenic | 50.0% | |
| GCCCTTGAGCTTGGATTACT+TGG | + | Chr8:35325263-35325282 | MsG0880044081.01.T01:CDS | 50.0% | |
| GGTTATTGTTGCAGATGGCC+AGG | + | Chr8:35324513-35324532 | MsG0880044081.01.T01:CDS | 50.0% | |
| TCTATTGCAGCCTCGATCAC+TGG | - | Chr8:35324457-35324476 | None:intergenic | 50.0% | |
| !! | GTTCTGGTTGGAGTTGGTGA+TGG | + | Chr8:35324979-35324998 | MsG0880044081.01.T01:CDS | 50.0% |
| !! | TGGAGTTGGTGATGGACCTT+GGG | + | Chr8:35324987-35325006 | MsG0880044081.01.T01:CDS | 50.0% |
| !! | TTGGAGTTGGTGATGGACCT+TGG | + | Chr8:35324986-35325005 | MsG0880044081.01.T01:CDS | 50.0% |
| ACCAAGTGGACGGATACCGA+AGG | - | Chr8:35324236-35324255 | None:intergenic | 55.0% | |
| CGGTATCCGTCCACTTGGTT+TGG | + | Chr8:35324237-35324256 | MsG0880044081.01.T01:CDS | 55.0% | |
| TCCGAGCCAAACCAAGTGGA+CGG | - | Chr8:35324246-35324265 | None:intergenic | 55.0% | |
| !! | TCCGTCCACTTGGTTTGGCT+CGG | + | Chr8:35324242-35324261 | MsG0880044081.01.T01:CDS | 55.0% |
| GCCTTCGGTATCCGTCCACT+TGG | + | Chr8:35324232-35324251 | MsG0880044081.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 35324155 | 35325289 | 35324155 | ID=MsG0880044081.01;Name=MsG0880044081.01 |
| Chr8 | mRNA | 35324155 | 35325289 | 35324155 | ID=MsG0880044081.01.T01;Parent=MsG0880044081.01;Name=MsG0880044081.01.T01;_AED=0.49;_eAED=0.65;_QI=0|0.75|0.4|1|0.75|0.6|5|0|206 |
| Chr8 | exon | 35324155 | 35324299 | 35324155 | ID=MsG0880044081.01.T01:exon:20414;Parent=MsG0880044081.01.T01 |
| Chr8 | exon | 35324377 | 35324534 | 35324377 | ID=MsG0880044081.01.T01:exon:20413;Parent=MsG0880044081.01.T01 |
| Chr8 | exon | 35324656 | 35324735 | 35324656 | ID=MsG0880044081.01.T01:exon:20412;Parent=MsG0880044081.01.T01 |
| Chr8 | exon | 35324960 | 35325065 | 35324960 | ID=MsG0880044081.01.T01:exon:20411;Parent=MsG0880044081.01.T01 |
| Chr8 | exon | 35325158 | 35325289 | 35325158 | ID=MsG0880044081.01.T01:exon:20410;Parent=MsG0880044081.01.T01 |
| Chr8 | CDS | 35324155 | 35324299 | 35324155 | ID=MsG0880044081.01.T01:cds;Parent=MsG0880044081.01.T01 |
| Chr8 | CDS | 35324377 | 35324534 | 35324377 | ID=MsG0880044081.01.T01:cds;Parent=MsG0880044081.01.T01 |
| Chr8 | CDS | 35324656 | 35324735 | 35324656 | ID=MsG0880044081.01.T01:cds;Parent=MsG0880044081.01.T01 |
| Chr8 | CDS | 35324960 | 35325065 | 35324960 | ID=MsG0880044081.01.T01:cds;Parent=MsG0880044081.01.T01 |
| Chr8 | CDS | 35325158 | 35325289 | 35325158 | ID=MsG0880044081.01.T01:cds;Parent=MsG0880044081.01.T01 |
| Gene Sequence |
| Protein sequence |
