AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044696.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044696.01.T01 MTR_8g467220 74.916 299 7 6 1 245 1 285 1.25e-132 375
MsG0880044696.01.T01 MTR_5g040650 53.115 305 68 10 1 245 1 290 7.86e-68 211
MsG0880044696.01.T01 MTR_5g040650 58.636 220 48 7 1 191 1 206 4.93e-61 192
MsG0880044696.01.T01 MTR_1g108490 28.111 217 100 6 1 188 1 190 4.41e-19 82.8
MsG0880044696.01.T01 MTR_1g108490 27.876 226 107 6 1 197 1 199 8.25e-19 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044696.01.T01 AT2G02960 42.672 232 80 5 57 241 33 258 3.35e-44 150
MsG0880044696.01.T01 AT2G02960 42.672 232 80 5 57 241 33 258 3.35e-44 150
MsG0880044696.01.T01 AT2G02960 42.672 232 80 5 57 241 33 258 3.35e-44 150
MsG0880044696.01.T01 AT2G02960 42.672 232 80 5 57 241 33 258 3.35e-44 150
MsG0880044696.01.T01 AT2G02960 42.672 232 80 5 57 241 33 258 3.35e-44 150
MsG0880044696.01.T01 AT2G02960 54.545 132 31 3 57 164 33 159 2.92e-38 135
MsG0880044696.01.T01 AT1G14260 44.385 187 64 4 4 166 5 175 4.87e-36 129
MsG0880044696.01.T01 AT1G14260 44.385 187 64 4 4 166 5 175 4.87e-36 129
MsG0880044696.01.T01 AT1G14260 44.385 187 64 4 4 166 5 175 4.87e-36 129
MsG0880044696.01.T01 AT3G47550 39.834 241 94 7 1 209 1 222 4.22e-34 122
MsG0880044696.01.T01 AT3G47550 37.838 296 101 9 1 232 1 277 7.13e-34 124
MsG0880044696.01.T01 AT3G47550 37.838 296 101 9 1 232 1 277 7.13e-34 124
MsG0880044696.01.T01 AT3G47550 39.831 236 91 7 1 204 1 217 7.17e-33 120
MsG0880044696.01.T01 AT5G62460 47.953 171 54 5 57 203 81 240 8.13e-30 114
MsG0880044696.01.T01 AT5G62460 47.953 171 54 5 57 203 68 227 8.65e-30 113
MsG0880044696.01.T01 AT5G62460 47.953 171 54 5 57 203 68 227 8.65e-30 113
MsG0880044696.01.T01 AT2G01275 29.717 212 97 5 1 188 27 210 3.88e-18 81.6
MsG0880044696.01.T01 AT2G01275 29.717 212 97 5 1 188 27 210 3.88e-18 81.6
MsG0880044696.01.T01 AT2G01275 29.717 212 97 5 1 188 1 184 4.75e-18 81.3
MsG0880044696.01.T01 AT2G01275 29.717 212 97 5 1 188 1 184 4.75e-18 81.3
MsG0880044696.01.T01 AT2G01275 29.717 212 97 5 1 188 1 184 4.75e-18 81.3
MsG0880044696.01.T01 AT5G38070 27.895 190 90 6 1 166 1 167 3.93e-12 64.7

Find 103 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATAATAACTTTATTTAT+TGG 0.168463 8:+47665062 MsG0880044696.01.T01:three_prime_UTR
TAGTGTTCGGTGGTGGAATT+TGG 0.173465 8:-47662126 None:intergenic
CTATGTTCTGGTGCAGTTAA+TGG 0.231444 8:+47664235 MsG0880044696.01.T01:CDS
CATTCACCGGCTGGGCCTTC+GGG 0.238857 8:+47662514 MsG0880044696.01.T01:CDS
GCGCGTGCCTCAAGAGTAAA+AGG 0.240504 8:-47664259 None:intergenic
TCATTCACCGGCTGGGCCTT+CGG 0.254316 8:+47662513 MsG0880044696.01.T01:CDS
GACAGACTCACCGAAGAAAA+AGG 0.258705 8:-47662239 None:intergenic
ATACAAACTACACTTGTTCT+TGG 0.295160 8:-47664876 None:intergenic
CATATTCAGCTTCGAAGAAT+TGG 0.316433 8:-47663983 None:intergenic
GAAGAAACTACCATTGATAT+AGG 0.327532 8:+47663752 MsG0880044696.01.T01:CDS
GGAGGATGGTATTGATAATC+TGG 0.332839 8:+47662627 MsG0880044696.01.T01:CDS
GTTGCTTTCGTGCTACAATC+TGG 0.341099 8:+47664793 MsG0880044696.01.T01:CDS
GCCTAATTCATTCTATGTTC+TGG 0.346615 8:+47664223 MsG0880044696.01.T01:intron
CACAGTTGCTGCTGGTGTTA+TGG 0.347344 8:-47664839 None:intergenic
ATATCAATGGTAGTTTCTTC+AGG 0.355321 8:-47663749 None:intergenic
GACACTCTCTGGCACGCCTT+TGG 0.362869 8:+47663917 MsG0880044696.01.T01:CDS
CGCCTGTAGCGGAAGTCTTA+AGG 0.384567 8:+47662660 MsG0880044696.01.T01:CDS
TGTTGAGCCAACGGCTCAAC+CGG 0.390160 8:-47662451 None:intergenic
AAGTGTAGTTTGTATGGAAA+TGG 0.400654 8:+47664884 MsG0880044696.01.T01:exon
GAAGGGAAGAGAGAGAGAAT+TGG 0.401972 8:-47662184 None:intergenic
AGTGTTCGGTGGTGGAATTT+GGG 0.403288 8:-47662125 None:intergenic
ATTGGATTCGGCGTATATAT+AGG 0.405439 8:-47662166 None:intergenic
AAGAACAAGTGTAGTTTGTA+TGG 0.407359 8:+47664878 MsG0880044696.01.T01:exon
AACATTCTTGCAGCGGAGGC+TGG 0.408803 8:+47663895 MsG0880044696.01.T01:intron
GGCTCAGGAGCAGGCTGAGC+CGG 0.411048 8:-47662475 None:intergenic
TTAAAATGAAATTAGATTGA+GGG 0.420346 8:-47665012 None:intergenic
GGCGGCATCGGCTCAGGAGC+AGG 0.428367 8:-47662484 None:intergenic
AGCGGAGGCTGGACACTCTC+TGG 0.428867 8:+47663906 MsG0880044696.01.T01:intron
AAGAAACTACCATTGATATA+GGG 0.430184 8:+47663753 MsG0880044696.01.T01:CDS
CCGGTGATTCATTCACCGGC+TGG 0.431407 8:+47662505 MsG0880044696.01.T01:CDS
CGATCATGTGGTGTTGTTTG+TGG 0.440955 8:+47662408 MsG0880044696.01.T01:CDS
TTTAAAATGAAATTAGATTG+AGG 0.448859 8:-47665013 None:intergenic
ACCAGAACATAGAATGAATT+AGG 0.456187 8:-47664224 None:intergenic
TCAGGATGCGGACGAGGTGG+TGG 0.457661 8:-47663731 None:intergenic
TCGATTAATGCGACCGATGC+CGG 0.461813 8:+47662432 MsG0880044696.01.T01:CDS
ATCACCGGCGGCATCGGCTC+AGG 0.463289 8:-47662490 None:intergenic
GGTGGTGGAGCAATATAATC+AGG 0.464702 8:-47663716 None:intergenic
AAGAGAGAGAGAATTGGATT+CGG 0.471956 8:-47662178 None:intergenic
TGCGGATTCACAGTTGCTGC+TGG 0.472649 8:-47664847 None:intergenic
GCTACAATCTGGGCAGCATA+GGG 0.473645 8:+47664804 MsG0880044696.01.T01:CDS
TGCTCCTGAGCCGATGCCGC+CGG 0.474218 8:+47662486 MsG0880044696.01.T01:CDS
ACCGATGCCGGTTGAGCCGT+TGG 0.474368 8:+47662444 MsG0880044696.01.T01:CDS
GTTTATAGAGCGAGAAAGAA+GGG 0.476227 8:-47662201 None:intergenic
ATTTGGGAACAACGTGGAAA+AGG 0.477128 8:-47662109 None:intergenic
CGAGCCGCTGTTGCAGCAGA+TGG 0.477787 8:+47662576 MsG0880044696.01.T01:CDS
TGAGCCGTTGGCTCAACATC+CGG 0.480048 8:+47662456 MsG0880044696.01.T01:CDS
GAATGAATCACCGGCGGCAT+CGG 0.484986 8:-47662496 None:intergenic
GGTTTATAGAGCGAGAAAGA+AGG 0.486147 8:-47662202 None:intergenic
ACAGGAGGCTGCAGCATTGG+CGG 0.488662 8:+47664762 MsG0880044696.01.T01:intron
GGCTGAGTGTAGGATTTGTC+AGG 0.492601 8:+47662603 MsG0880044696.01.T01:CDS
ATTGTAGCACGAAAGCAACT+TGG 0.495200 8:-47664789 None:intergenic
AATACAGGAGGCTGCAGCAT+TGG 0.499752 8:+47664759 MsG0880044696.01.T01:intron
CTTGCGTGATCCTCGATTGT+TGG 0.500268 8:+47663941 MsG0880044696.01.T01:CDS
GTTATATTAGAATTAGAGCC+GGG 0.500305 8:-47664966 None:intergenic
TTCGGGTTCTTCTTCAGCGA+CGG 0.501494 8:+47662531 MsG0880044696.01.T01:CDS
TTGCTTTCGTGCTACAATCT+GGG 0.503156 8:+47664794 MsG0880044696.01.T01:CDS
TACCTTAAGACTTCCGCTAC+AGG 0.504196 8:-47662662 None:intergenic
ACTTGTTCTTGGTGTGGGTG+CGG 0.506923 8:-47664865 None:intergenic
GAAAGGTTAACGTTAGTGTT+CGG 0.514852 8:-47662139 None:intergenic
GTTTCTTCAGGATGCGGACG+AGG 0.515559 8:-47663737 None:intergenic
GAGGCACGCGCTTTCTGTCA+CGG 0.518453 8:+47664271 MsG0880044696.01.T01:CDS
TTCTTCGAAGCTGAATATGA+TGG 0.519355 8:+47663987 MsG0880044696.01.T01:CDS
CGGTGATTCATTCACCGGCT+GGG 0.519534 8:+47662506 MsG0880044696.01.T01:CDS
TTAACGTTAGTGTTCGGTGG+TGG 0.521659 8:-47662133 None:intergenic
GAAGAACCCGAAGGCCCAGC+CGG 0.522173 8:-47662520 None:intergenic
ATCTCCATCTGCTGCAACAG+CGG 0.524481 8:-47662580 None:intergenic
AACTACACTTGTTCTTGGTG+TGG 0.527387 8:-47664871 None:intergenic
TTAATCTTACCCTATATCAA+TGG 0.530350 8:-47663762 None:intergenic
GCCGCCGGTGATTCATTCAC+CGG 0.532546 8:+47662501 MsG0880044696.01.T01:CDS
AGTTATATTAGAATTAGAGC+CGG 0.543436 8:-47664967 None:intergenic
AGCAATATAATCAGGTTCAT+AGG 0.549152 8:-47663708 None:intergenic
ATGGTAGTTTCTTCAGGATG+CGG 0.552605 8:-47663743 None:intergenic
TGCTACAATCTGGGCAGCAT+AGG 0.553716 8:+47664803 MsG0880044696.01.T01:CDS
ACTACACTTGTTCTTGGTGT+GGG 0.560807 8:-47664870 None:intergenic
ACGGCAAAATGCAGCTCCGT+TGG 0.561312 8:-47664027 None:intergenic
GCCAACGGCTCAACCGGCAT+CGG 0.561647 8:-47662445 None:intergenic
AGACTTCCGCTACAGGCGCA+AGG 0.568684 8:-47662655 None:intergenic
TTGTAGCACGAAAGCAACTT+GGG 0.569577 8:-47664788 None:intergenic
AGGATTTGTCAGGAGGAGGA+TGG 0.574659 8:+47662613 MsG0880044696.01.T01:CDS
GTGTAGGATTTGTCAGGAGG+AGG 0.581312 8:+47662609 MsG0880044696.01.T01:CDS
TGAGCCGGATGTTGAGCCAA+CGG 0.587025 8:-47662460 None:intergenic
GCTGTTGCAGCAGATGGAGA+TGG 0.590554 8:+47662582 MsG0880044696.01.T01:CDS
CCAGCCGGTGAATGAATCAC+CGG 0.593661 8:-47662505 None:intergenic
GAGAATCCTTGCGCCTGTAG+CGG 0.594462 8:+47662649 MsG0880044696.01.T01:CDS
GCGTATATATAGGAAGAGAA+AGG 0.598332 8:-47662156 None:intergenic
AGATGGAGATGGCTGAGTGT+AGG 0.601452 8:+47662593 MsG0880044696.01.T01:CDS
TCGATTGTTGGCAATTGCAG+AGG 0.603328 8:+47663953 MsG0880044696.01.T01:CDS
TTACGATCAGAGCAGCTGAA+CGG 0.606397 8:-47664046 None:intergenic
CGCGTGCCTCAAGAGTAAAA+GGG 0.611961 8:-47664258 None:intergenic
CGAGGATCACGCAAGTCCAA+AGG 0.614034 8:-47663933 None:intergenic
TCTTCAGGATGCGGACGAGG+TGG 0.626049 8:-47663734 None:intergenic
AGGTTAACGTTAGTGTTCGG+TGG 0.627205 8:-47662136 None:intergenic
GCGACGGATGATGACGATGT+CGG 0.628741 8:+47662547 MsG0880044696.01.T01:CDS
TCTGCAATTGCCAACAATCG+AGG 0.633472 8:-47663951 None:intergenic
AATGATGAGCAAGAGTAGCA+TGG 0.635348 8:-47664941 None:intergenic
TATGCTGCTTCTAATGCCAA+CGG 0.637155 8:+47664011 MsG0880044696.01.T01:CDS
TGAGTGTAGGATTTGTCAGG+AGG 0.657795 8:+47662606 MsG0880044696.01.T01:CDS
GCCGGTGAATGAATCACCGG+CGG 0.662712 8:-47662502 None:intergenic
TGAATCAATGAGCGATCATG+TGG 0.669095 8:+47662396 MsG0880044696.01.T01:exon
GGATGATGACGATGTCGGCG+AGG 0.685342 8:+47662552 MsG0880044696.01.T01:CDS
CTACAATCTGGGCAGCATAG+GGG 0.695813 8:+47664805 MsG0880044696.01.T01:CDS
GTCGCTGAAGAAGAACCCGA+AGG 0.704233 8:-47662529 None:intergenic
GGTGGAATTTGGGAACAACG+TGG 0.738538 8:-47662115 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTAAATGATACA+TGG + Chr8:47662786-47662805 MsG0880044696.01.T01:intron 10.0%
!! ATAAACTTTATACAATTGAT+GGG + Chr8:47664367-47664386 MsG0880044696.01.T01:intron 15.0%
!! ATACAAATAATCAGTTAAAA+AGG - Chr8:47664089-47664108 None:intergenic 15.0%
!! TATAAACTTTATACAATTGA+TGG + Chr8:47664366-47664385 MsG0880044696.01.T01:intron 15.0%
!! TTAAAATGAAATTAGATTGA+GGG - Chr8:47665015-47665034 None:intergenic 15.0%
!!! TAATAATAAATTTGCTTACA+AGG + Chr8:47663018-47663037 MsG0880044696.01.T01:intron 15.0%
!!! TTTAAAATGAAATTAGATTG+AGG - Chr8:47665016-47665035 None:intergenic 15.0%
!! AACTGATTATTTGTATAATC+CGG + Chr8:47664093-47664112 MsG0880044696.01.T01:intron 20.0%
!! ATGTATATCATAACATTGTA+TGG + Chr8:47663513-47663532 MsG0880044696.01.T01:intron 20.0%
!! ATTAGAAAAAAAGAAGAAGA+AGG - Chr8:47662322-47662341 None:intergenic 20.0%
!!! ATTCTTATCATTTCATGTTT+TGG + Chr8:47664735-47664754 MsG0880044696.01.T01:intron 20.0%
!!! TGTTACAAATTTCATGTTTT+AGG + Chr8:47662709-47662728 MsG0880044696.01.T01:intron 20.0%
! AACATGTGAAATTTGTCATA+AGG + Chr8:47663465-47663484 MsG0880044696.01.T01:intron 25.0%
! AAGAAACTACCATTGATATA+GGG + Chr8:47663753-47663772 MsG0880044696.01.T01:CDS 25.0%
! AAGAATTAACATAGCAAAGT+GGG + Chr8:47663142-47663161 MsG0880044696.01.T01:intron 25.0%
! AGTTATATTAGAATTAGAGC+CGG - Chr8:47664970-47664989 None:intergenic 25.0%
! CATTTACAAAATTGTATGTC+TGG - Chr8:47664134-47664153 None:intergenic 25.0%
! TAAGAATTAACATAGCAAAG+TGG + Chr8:47663141-47663160 MsG0880044696.01.T01:intron 25.0%
! TATTAAATGATACATGGATG+TGG + Chr8:47662792-47662811 MsG0880044696.01.T01:intron 25.0%
! TGAAATGATAAGAATACTGT+AGG - Chr8:47664730-47664749 None:intergenic 25.0%
! TTAATCTTACCCTATATCAA+TGG - Chr8:47663765-47663784 None:intergenic 25.0%
! TTATAAACTACATAGACAGA+AGG - Chr8:47664351-47664370 None:intergenic 25.0%
! TTATGTAAGTGTCAAAAGAT+TGG - Chr8:47663253-47663272 None:intergenic 25.0%
! TTTATTCTGTTATGCTTTGA+TGG + Chr8:47662849-47662868 MsG0880044696.01.T01:intron 25.0%
! TTTCATCACATAGATAATTG+CGG + Chr8:47663110-47663129 MsG0880044696.01.T01:intron 25.0%
! TTTCGTAAATAACAATGTCT+AGG - Chr8:47664586-47664605 None:intergenic 25.0%
!! CAATTTTGTAAATGAACTCT+AGG + Chr8:47664140-47664159 MsG0880044696.01.T01:intron 25.0%
!! TTCAACAAGTCAATTTTACA+TGG - Chr8:47664918-47664937 None:intergenic 25.0%
!!! ATTTCATGTTTTGGTAATAC+AGG + Chr8:47664744-47664763 MsG0880044696.01.T01:intron 25.0%
!!! CATTGTATGGTTTTGTTTAT+AGG + Chr8:47663526-47663545 MsG0880044696.01.T01:intron 25.0%
!!! TACAAATTTCATGTTTTAGG+TGG + Chr8:47662712-47662731 MsG0880044696.01.T01:intron 25.0%
ACCAGAACATAGAATGAATT+AGG - Chr8:47664227-47664246 None:intergenic 30.0%
AGCAATATAATCAGGTTCAT+AGG - Chr8:47663711-47663730 None:intergenic 30.0%
ATACAAACTACACTTGTTCT+TGG - Chr8:47664879-47664898 None:intergenic 30.0%
ATATCAATGGTAGTTTCTTC+AGG - Chr8:47663752-47663771 None:intergenic 30.0%
CTTACAGAGAAAAACATTGA+TGG - Chr8:47664317-47664336 None:intergenic 30.0%
GAAGAAACTACCATTGATAT+AGG + Chr8:47663752-47663771 MsG0880044696.01.T01:CDS 30.0%
GTTATATTAGAATTAGAGCC+GGG - Chr8:47664969-47664988 None:intergenic 30.0%
TAGTCTTCACTCAAGAATTA+TGG + Chr8:47663799-47663818 MsG0880044696.01.T01:intron 30.0%
! AAGAACAAGTGTAGTTTGTA+TGG + Chr8:47664878-47664897 MsG0880044696.01.T01:exon 30.0%
! AAGTGTAGTTTGTATGGAAA+TGG + Chr8:47664884-47664903 MsG0880044696.01.T01:exon 30.0%
! GGATATTGATTAGATGTGAT+TGG + Chr8:47663163-47663182 MsG0880044696.01.T01:intron 30.0%
! TTTGAAACTTCTGTACTCAT+TGG + Chr8:47663863-47663882 MsG0880044696.01.T01:intron 30.0%
!! TCTTTTACCTTGCTATATCA+TGG + Chr8:47664470-47664489 MsG0880044696.01.T01:intron 30.0%
!!! GTATGGTTTTGTTTATAGGT+AGG + Chr8:47663530-47663549 MsG0880044696.01.T01:intron 30.0%
AAAAAGGGAAGAGACAAGAA+GGG - Chr8:47662226-47662245 None:intergenic 35.0%
AAGAGAGAGAGAATTGGATT+CGG - Chr8:47662181-47662200 None:intergenic 35.0%
AATTGTGAACATTCTTGCAG+CGG + Chr8:47663888-47663907 MsG0880044696.01.T01:intron 35.0%
ACGTCTTTGATCTTAAGTGT+CGG + Chr8:47664633-47664652 MsG0880044696.01.T01:intron 35.0%
ATCAGTTAAAAAGGACTGCT+TGG - Chr8:47664080-47664099 None:intergenic 35.0%
ATGATACATGGATGTGGAAA+AGG + Chr8:47662798-47662817 MsG0880044696.01.T01:intron 35.0%
ATTGGATTCGGCGTATATAT+AGG - Chr8:47662169-47662188 None:intergenic 35.0%
CATATTCAGCTTCGAAGAAT+TGG - Chr8:47663986-47664005 None:intergenic 35.0%
CATTGATGTTAGAGAGCTAT+TGG + Chr8:47662934-47662953 MsG0880044696.01.T01:intron 35.0%
GAAAGGTTAACGTTAGTGTT+CGG - Chr8:47662142-47662161 None:intergenic 35.0%
GCCTAATTCATTCTATGTTC+TGG + Chr8:47664223-47664242 MsG0880044696.01.T01:intron 35.0%
GCGTATATATAGGAAGAGAA+AGG - Chr8:47662159-47662178 None:intergenic 35.0%
GTTTATAGAGCGAGAAAGAA+GGG - Chr8:47662204-47662223 None:intergenic 35.0%
TATCCAGCAGTTCGTAAATT+AGG - Chr8:47663384-47663403 None:intergenic 35.0%
TGCTTTCAAATATGTTGTCG+AGG + Chr8:47664391-47664410 MsG0880044696.01.T01:intron 35.0%
TTAGGAGGACATAAATAGAG+AGG - Chr8:47663366-47663385 None:intergenic 35.0%
TTCTTCGAAGCTGAATATGA+TGG + Chr8:47663987-47664006 MsG0880044696.01.T01:CDS 35.0%
! ATATCTCTTGCTCCTTTTTC+CGG + Chr8:47664678-47664697 MsG0880044696.01.T01:intron 35.0%
! CAATCAGTATTTTGCAACGA+CGG + Chr8:47664499-47664518 MsG0880044696.01.T01:intron 35.0%
! CATGCACATTGACTATGATA+GGG + Chr8:47664168-47664187 MsG0880044696.01.T01:intron 35.0%
! GCTTACAAGGTTTTCTTCAT+AGG + Chr8:47663031-47663050 MsG0880044696.01.T01:intron 35.0%
! GGAACAATGCTTTTGTGTAT+GGG + Chr8:47663330-47663349 MsG0880044696.01.T01:intron 35.0%
! GTCTAGGACATGAACAAATA+TGG - Chr8:47664570-47664589 None:intergenic 35.0%
! TCATGCACATTGACTATGAT+AGG + Chr8:47664167-47664186 MsG0880044696.01.T01:intron 35.0%
! TTGTCTCTTCCCTTTTTCTT+CGG + Chr8:47662229-47662248 MsG0880044696.01.T01:five_prime_UTR 35.0%
!! ATACACAAAAGCATTGTTCC+CGG - Chr8:47663330-47663349 None:intergenic 35.0%
!!! TCATGTTTTGGTAATACAGG+AGG + Chr8:47664747-47664766 MsG0880044696.01.T01:intron 35.0%
AACTACACTTGTTCTTGGTG+TGG - Chr8:47664874-47664893 None:intergenic 40.0%
AATGATGAGCAAGAGTAGCA+TGG - Chr8:47664944-47664963 None:intergenic 40.0%
ACAGACTCACCGAAGAAAAA+GGG - Chr8:47662241-47662260 None:intergenic 40.0%
AGCAATCTGTTTCAAGCTGA+TGG + Chr8:47663831-47663850 MsG0880044696.01.T01:intron 40.0%
ATGGTAGTTTCTTCAGGATG+CGG - Chr8:47663746-47663765 None:intergenic 40.0%
ATTGTAGCACGAAAGCAACT+TGG - Chr8:47664792-47664811 None:intergenic 40.0%
ATTTGGGAACAACGTGGAAA+AGG - Chr8:47662112-47662131 None:intergenic 40.0%
CTATGTTCTGGTGCAGTTAA+TGG + Chr8:47664235-47664254 MsG0880044696.01.T01:CDS 40.0%
GAAAAAGGGAAGAGACAAGA+AGG - Chr8:47662227-47662246 None:intergenic 40.0%
GGTTTATAGAGCGAGAAAGA+AGG - Chr8:47662205-47662224 None:intergenic 40.0%
TCAAACACGCTCTTAGTAAC+CGG + Chr8:47663308-47663327 MsG0880044696.01.T01:intron 40.0%
TCACGATCTCGAGAAAATGA+AGG - Chr8:47662272-47662291 None:intergenic 40.0%
TGAATCAATGAGCGATCATG+TGG + Chr8:47662396-47662415 MsG0880044696.01.T01:exon 40.0%
TGTTGCATATTCCCGGAAAA+AGG - Chr8:47664693-47664712 None:intergenic 40.0%
TTGCTTTCGTGCTACAATCT+GGG + Chr8:47664794-47664813 MsG0880044696.01.T01:CDS 40.0%
TTGTAGCACGAAAGCAACTT+GGG - Chr8:47664791-47664810 None:intergenic 40.0%
! ACCTTGCTATATCATGGCTT+GGG + Chr8:47664476-47664495 MsG0880044696.01.T01:intron 40.0%
! ACTACACTTGTTCTTGGTGT+GGG - Chr8:47664873-47664892 None:intergenic 40.0%
! ACTCTTGCTCATCATTTTCC+CGG + Chr8:47664948-47664967 MsG0880044696.01.T01:three_prime_UTR 40.0%
! CAAGGTTTTCTTCATAGGCT+TGG + Chr8:47663036-47663055 MsG0880044696.01.T01:intron 40.0%
! CTCTATCTGTGTTTTGTGCA+AGG - Chr8:47663218-47663237 None:intergenic 40.0%
! CTGCATTTGTTGCATATTCC+CGG - Chr8:47664700-47664719 None:intergenic 40.0%
! GAAATTTTCTCGAGATCGTG+TGG - Chr8:47662298-47662317 None:intergenic 40.0%
! GGGAACAATGCTTTTGTGTA+TGG + Chr8:47663329-47663348 MsG0880044696.01.T01:intron 40.0%
! TAATGGCCCTTTTACTCTTG+AGG + Chr8:47664252-47664271 MsG0880044696.01.T01:CDS 40.0%
! TACCTTGCTATATCATGGCT+TGG + Chr8:47664475-47664494 MsG0880044696.01.T01:intron 40.0%
! TATCTCTTGCTCCTTTTTCC+GGG + Chr8:47664679-47664698 MsG0880044696.01.T01:intron 40.0%
! TATGCTGCTTCTAATGCCAA+CGG + Chr8:47664011-47664030 MsG0880044696.01.T01:CDS 40.0%
! TGCTTTTGTGTATGGGACAT+TGG + Chr8:47663337-47663356 MsG0880044696.01.T01:intron 40.0%
!! AATTCACACAGAGAGTGCTT+TGG - Chr8:47663626-47663645 None:intergenic 40.0%
!! GGAGGATGGTATTGATAATC+TGG + Chr8:47662627-47662646 MsG0880044696.01.T01:CDS 40.0%
AGGTTAACGTTAGTGTTCGG+TGG - Chr8:47662139-47662158 None:intergenic 45.0%
CAAACACGCTCTTAGTAACC+GGG + Chr8:47663309-47663328 MsG0880044696.01.T01:intron 45.0%
CCAGCAGTTCGTAAATTAGG+AGG - Chr8:47663381-47663400 None:intergenic 45.0%
CCTCCTAATTTACGAACTGC+TGG + Chr8:47663378-47663397 MsG0880044696.01.T01:intron 45.0%
GAAGGGAAGAGAGAGAGAAT+TGG - Chr8:47662187-47662206 None:intergenic 45.0%
GACAGACTCACCGAAGAAAA+AGG - Chr8:47662242-47662261 None:intergenic 45.0%
GCAAGGTAAAAGAAAGCCAG+CGG - Chr8:47664463-47664482 None:intergenic 45.0%
GGGTGCTAACACTTTACACT+TGG + Chr8:47664188-47664207 MsG0880044696.01.T01:intron 45.0%
TACCTTAAGACTTCCGCTAC+AGG - Chr8:47662665-47662684 None:intergenic 45.0%
TCGATTGTTGGCAATTGCAG+AGG + Chr8:47663953-47663972 MsG0880044696.01.T01:CDS 45.0%
TCTGCAATTGCCAACAATCG+AGG - Chr8:47663954-47663973 None:intergenic 45.0%
TGAGTGTAGGATTTGTCAGG+AGG + Chr8:47662606-47662625 MsG0880044696.01.T01:CDS 45.0%
TTACGATCAGAGCAGCTGAA+CGG - Chr8:47664049-47664068 None:intergenic 45.0%
! GTTGCTTTCGTGCTACAATC+TGG + Chr8:47664793-47664812 MsG0880044696.01.T01:CDS 45.0%
! TTAACGTTAGTGTTCGGTGG+TGG - Chr8:47662136-47662155 None:intergenic 45.0%
!! AGTGTTCGGTGGTGGAATTT+GGG - Chr8:47662128-47662147 None:intergenic 45.0%
!! CGATCATGTGGTGTTGTTTG+TGG + Chr8:47662408-47662427 MsG0880044696.01.T01:CDS 45.0%
!! GGTGGTGGAGCAATATAATC+AGG - Chr8:47663719-47663738 None:intergenic 45.0%
!! TAGTGTTCGGTGGTGGAATT+TGG - Chr8:47662129-47662148 None:intergenic 45.0%
!!! ATAATAATAACTTTATTTAT+TGG + Chr8:47665062-47665081 MsG0880044696.01.T01:three_prime_UTR 5.0%
AATACAGGAGGCTGCAGCAT+TGG + Chr8:47664759-47664778 MsG0880044696.01.T01:intron 50.0%
AGATGGAGATGGCTGAGTGT+AGG + Chr8:47662593-47662612 MsG0880044696.01.T01:CDS 50.0%
AGGATTTGTCAGGAGGAGGA+TGG + Chr8:47662613-47662632 MsG0880044696.01.T01:CDS 50.0%
ATCTCCATCTGCTGCAACAG+CGG - Chr8:47662583-47662602 None:intergenic 50.0%
CAACGCTGGTGCAACGAAAA+AGG + Chr8:47663436-47663455 MsG0880044696.01.T01:intron 50.0%
CGCGTGCCTCAAGAGTAAAA+GGG - Chr8:47664261-47664280 None:intergenic 50.0%
CTACAATCTGGGCAGCATAG+GGG + Chr8:47664805-47664824 MsG0880044696.01.T01:CDS 50.0%
CTGGTGCGCATATACATGAC+CGG - Chr8:47664115-47664134 None:intergenic 50.0%
CTTGCGTGATCCTCGATTGT+TGG + Chr8:47663941-47663960 MsG0880044696.01.T01:CDS 50.0%
GCCCAAGCCATGATATAGCA+AGG - Chr8:47664480-47664499 None:intergenic 50.0%
GCTACAATCTGGGCAGCATA+GGG + Chr8:47664804-47664823 MsG0880044696.01.T01:CDS 50.0%
GGCTGAGTGTAGGATTTGTC+AGG + Chr8:47662603-47662622 MsG0880044696.01.T01:CDS 50.0%
GGTGGAATTTGGGAACAACG+TGG - Chr8:47662118-47662137 None:intergenic 50.0%
GTGTAGGATTTGTCAGGAGG+AGG + Chr8:47662609-47662628 MsG0880044696.01.T01:CDS 50.0%
TCGATTAATGCGACCGATGC+CGG + Chr8:47662432-47662451 MsG0880044696.01.T01:CDS 50.0%
TGCTACAATCTGGGCAGCAT+AGG + Chr8:47664803-47664822 MsG0880044696.01.T01:CDS 50.0%
TGTGAACATTCTTGCAGCGG+AGG + Chr8:47663891-47663910 MsG0880044696.01.T01:intron 50.0%
! ACTTGTTCTTGGTGTGGGTG+CGG - Chr8:47664868-47664887 None:intergenic 50.0%
! ATAGAAAGTGCGTCCAACGC+TGG + Chr8:47663422-47663441 MsG0880044696.01.T01:intron 50.0%
! CACAGTTGCTGCTGGTGTTA+TGG - Chr8:47664842-47664861 None:intergenic 50.0%
! TTCGGGTTCTTCTTCAGCGA+CGG + Chr8:47662531-47662550 MsG0880044696.01.T01:CDS 50.0%
!! CTTTTTCGTTGCACCAGCGT+TGG - Chr8:47663438-47663457 None:intergenic 50.0%
AACATTCTTGCAGCGGAGGC+TGG + Chr8:47663895-47663914 MsG0880044696.01.T01:intron 55.0%
ACGGCAAAATGCAGCTCCGT+TGG - Chr8:47664030-47664049 None:intergenic 55.0%
CCAGCCGGTGAATGAATCAC+CGG - Chr8:47662508-47662527 None:intergenic 55.0%
CGAGGATCACGCAAGTCCAA+AGG - Chr8:47663936-47663955 None:intergenic 55.0%
GAATGAATCACCGGCGGCAT+CGG - Chr8:47662499-47662518 None:intergenic 55.0%
GAGAATCCTTGCGCCTGTAG+CGG + Chr8:47662649-47662668 MsG0880044696.01.T01:CDS 55.0%
GCGCGTGCCTCAAGAGTAAA+AGG - Chr8:47664262-47664281 None:intergenic 55.0%
GCTGTTGCAGCAGATGGAGA+TGG + Chr8:47662582-47662601 MsG0880044696.01.T01:CDS 55.0%
GTCGCTGAAGAAGAACCCGA+AGG - Chr8:47662532-47662551 None:intergenic 55.0%
GTTTCTTCAGGATGCGGACG+AGG - Chr8:47663740-47663759 None:intergenic 55.0%
TGAGCCGGATGTTGAGCCAA+CGG - Chr8:47662463-47662482 None:intergenic 55.0%
TGCGGATTCACAGTTGCTGC+TGG - Chr8:47664850-47664869 None:intergenic 55.0%
TGTTGAGCCAACGGCTCAAC+CGG - Chr8:47662454-47662473 None:intergenic 55.0%
! CGCCTGTAGCGGAAGTCTTA+AGG + Chr8:47662660-47662679 MsG0880044696.01.T01:CDS 55.0%
! CGGTGATTCATTCACCGGCT+GGG + Chr8:47662506-47662525 MsG0880044696.01.T01:CDS 55.0%
! CTTTTCTTGCTTCGAGCCGC+TGG + Chr8:47664444-47664463 MsG0880044696.01.T01:intron 55.0%
! GCGACGGATGATGACGATGT+CGG + Chr8:47662547-47662566 MsG0880044696.01.T01:CDS 55.0%
!! TGAGCCGTTGGCTCAACATC+CGG + Chr8:47662456-47662475 MsG0880044696.01.T01:CDS 55.0%
AGACTTCCGCTACAGGCGCA+AGG - Chr8:47662658-47662677 None:intergenic 60.0%
CCGGTGATTCATTCACCGGC+TGG + Chr8:47662505-47662524 MsG0880044696.01.T01:CDS 60.0%
GACACTCTCTGGCACGCCTT+TGG + Chr8:47663917-47663936 MsG0880044696.01.T01:CDS 60.0%
GAGGCACGCGCTTTCTGTCA+CGG + Chr8:47664271-47664290 MsG0880044696.01.T01:CDS 60.0%
GCCGCCGGTGATTCATTCAC+CGG + Chr8:47662501-47662520 MsG0880044696.01.T01:CDS 60.0%
GCCGGTGAATGAATCACCGG+CGG - Chr8:47662505-47662524 None:intergenic 60.0%
TCTTCAGGATGCGGACGAGG+TGG - Chr8:47663737-47663756 None:intergenic 60.0%
! ACAGGAGGCTGCAGCATTGG+CGG + Chr8:47664762-47664781 MsG0880044696.01.T01:intron 60.0%
! GGATGATGACGATGTCGGCG+AGG + Chr8:47662552-47662571 MsG0880044696.01.T01:CDS 60.0%
! TCATTCACCGGCTGGGCCTT+CGG + Chr8:47662513-47662532 MsG0880044696.01.T01:CDS 60.0%
AGCGGAGGCTGGACACTCTC+TGG + Chr8:47663906-47663925 MsG0880044696.01.T01:intron 65.0%
CGAGCCGCTGTTGCAGCAGA+TGG + Chr8:47662576-47662595 MsG0880044696.01.T01:CDS 65.0%
GAAGAACCCGAAGGCCCAGC+CGG - Chr8:47662523-47662542 None:intergenic 65.0%
GCCAACGGCTCAACCGGCAT+CGG - Chr8:47662448-47662467 None:intergenic 65.0%
TCAGGATGCGGACGAGGTGG+TGG - Chr8:47663734-47663753 None:intergenic 65.0%
! ACCGATGCCGGTTGAGCCGT+TGG + Chr8:47662444-47662463 MsG0880044696.01.T01:CDS 65.0%
! CATTCACCGGCTGGGCCTTC+GGG + Chr8:47662514-47662533 MsG0880044696.01.T01:CDS 65.0%
GGCTCAGGAGCAGGCTGAGC+CGG - Chr8:47662478-47662497 None:intergenic 70.0%
TGCTCCTGAGCCGATGCCGC+CGG + Chr8:47662486-47662505 MsG0880044696.01.T01:CDS 70.0%
!! ATCACCGGCGGCATCGGCTC+AGG - Chr8:47662493-47662512 None:intergenic 70.0%
!! GGCGGCATCGGCTCAGGAGC+AGG - Chr8:47662487-47662506 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 47662107 47665084 47662107 ID=MsG0880044696.01;Name=MsG0880044696.01
Chr8 mRNA 47662107 47665084 47662107 ID=MsG0880044696.01.T01;Parent=MsG0880044696.01;Name=MsG0880044696.01.T01;_AED=0.33;_eAED=0.35;_QI=164|0.4|0.83|1|0.8|0.66|6|193|245
Chr8 exon 47662107 47662250 47662107 ID=MsG0880044696.01.T01:exon:19534;Parent=MsG0880044696.01.T01
Chr8 exon 47662383 47662681 47662383 ID=MsG0880044696.01.T01:exon:19535;Parent=MsG0880044696.01.T01
Chr8 exon 47663707 47663774 47663707 ID=MsG0880044696.01.T01:exon:19536;Parent=MsG0880044696.01.T01
Chr8 exon 47663908 47664064 47663908 ID=MsG0880044696.01.T01:exon:19537;Parent=MsG0880044696.01.T01
Chr8 exon 47664224 47664331 47664224 ID=MsG0880044696.01.T01:exon:19538;Parent=MsG0880044696.01.T01
Chr8 exon 47664766 47665084 47664766 ID=MsG0880044696.01.T01:exon:19539;Parent=MsG0880044696.01.T01
Chr8 five_prime_UTR 47662107 47662250 47662107 ID=MsG0880044696.01.T01:five_prime_utr;Parent=MsG0880044696.01.T01
Chr8 five_prime_UTR 47662383 47662402 47662383 ID=MsG0880044696.01.T01:five_prime_utr;Parent=MsG0880044696.01.T01
Chr8 CDS 47662403 47662681 47662403 ID=MsG0880044696.01.T01:cds;Parent=MsG0880044696.01.T01
Chr8 CDS 47663707 47663774 47663707 ID=MsG0880044696.01.T01:cds;Parent=MsG0880044696.01.T01
Chr8 CDS 47663908 47664064 47663908 ID=MsG0880044696.01.T01:cds;Parent=MsG0880044696.01.T01
Chr8 CDS 47664224 47664331 47664224 ID=MsG0880044696.01.T01:cds;Parent=MsG0880044696.01.T01
Chr8 CDS 47664766 47664891 47664766 ID=MsG0880044696.01.T01:cds;Parent=MsG0880044696.01.T01
Chr8 three_prime_UTR 47664892 47665084 47664892 ID=MsG0880044696.01.T01:three_prime_utr;Parent=MsG0880044696.01.T01
Gene Sequence

>MsG0880044696.01.T01

ATGAGCGATCATGTGGTGTTGTTTGTGGATCGATTAATGCGACCGATGCCGGTTGAGCCGTTGGCTCAACATCCGGCTCAGCCTGCTCCTGAGCCGATGCCGCCGGTGATTCATTCACCGGCTGGGCCTTCGGGTTCTTCTTCAGCGACGGATGATGACGATGTCGGCGAGGACGAGCCGCTGTTGCAGCAGATGGAGATGGCTGAGTGTAGGATTTGTCAGGAGGAGGATGGTATTGATAATCTGGAGAATCCTTGCGCCTGTAGCGGAAGTCTTAAGTCCTATGAACCTGATTATATTGCTCCACCACCTCGTCCGCATCCTGAAGAAACTACCATTGATATAGGCGGAGGCTGGACACTCTCTGGCACGCCTTTGGACTTGCGTGATCCTCGATTGTTGGCAATTGCAGAGGCAGAACGCCAATTCTTCGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAACGGAGCTGCATTTTGCCGTTCAGCTGCTCTGATCCCTAATTCATTCTATGTTCTGGTGCAGTTAATGGCCCTTTTACTCTTGAGGCACGCGCTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCAATGTTTTTCTCTGAGGCTGCAGCATTGGCGGCAACCCAAGTTGCTTTCGTGCTACAATCTGGGCAGCATAGGGGACTGCAATTTGCCATAACACCAGCAGCAACTGTGAATCCGCACCCACACCAAGAACAAGTGTAG
Protein sequence

>MsG0880044696.01.T01

MSDHVVLFVDRLMRPMPVEPLAQHPAQPAPEPMPPVIHSPAGPSGSSSATDDDDVGEDEPLLQQMEMAECRICQEEDGIDNLENPCACSGSLKSYEPDYIAPPPRPHPEETTIDIGGGWTLSGTPLDLRDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALIPNSFYVLVQLMALLLLRHALSVTDADAEDDPSMFFSEAAALAATQVAFVLQSGQHRGLQFAITPAATVNPHPHQEQV*