AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011255.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011255.01.T01 MTR_2g100660 85.769 260 15 3 1 239 1 259 7.41e-125 377
MsG0280011255.01.T01 MTR_2g100660 60.674 89 31 2 225 310 387 474 4.96e-22 97.8
MsG0280011255.01.T01 MTR_8g104340 53.947 76 31 2 231 306 297 368 4.83e-13 70.1
MsG0280011255.01.T01 MTR_8g104340 53.947 76 31 2 231 306 297 368 5.33e-13 70.1
MsG0280011255.01.T01 MTR_8g104340 53.947 76 31 2 231 306 297 368 6.76e-13 70.1
MsG0280011255.01.T01 MTR_6g084410 48.684 76 35 2 231 306 427 498 1.07e-11 66.6
MsG0280011255.01.T01 MTR_6g084410 33.333 138 56 3 129 234 168 301 5.04e-11 64.3
MsG0280011255.01.T01 MTR_1g475240 68.182 44 14 0 239 282 439 482 9.17e-11 63.5
MsG0280011255.01.T01 MTR_1g075190 68.182 44 14 0 239 282 439 482 9.17e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011255.01.T01 AT5G16180 35.880 301 134 11 2 257 43 329 4.32e-36 137
MsG0280011255.01.T01 AT5G16180 54.412 68 30 1 239 306 383 449 2.59e-12 68.2
MsG0280011255.01.T01 AT5G16180 35.880 301 134 11 2 257 43 329 1.77e-35 137
MsG0280011255.01.T01 AT5G16180 54.412 68 30 1 239 306 383 449 3.47e-12 67.8
MsG0280011255.01.T01 AT3G18390 48.684 76 35 2 231 306 459 530 3.89e-12 67.8
MsG0280011255.01.T01 AT3G18390 29.134 127 59 2 139 234 205 331 7.91e-11 63.9
MsG0280011255.01.T01 AT3G01370 63.462 52 16 1 231 282 395 443 6.21e-12 67.4
MsG0280011255.01.T01 AT4G29750 72.727 44 12 0 239 282 453 496 4.21e-11 64.7
MsG0280011255.01.T01 AT4G29750 72.727 44 12 0 239 282 453 496 4.56e-11 64.7

Find 83 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAGCAAGCAACATATTT+TGG 0.181157 2:-81498036 MsG0280011255.01.T01:three_prime_UTR
AATTAGGTTTGTTGTGATTA+AGG 0.212609 2:+81503385 None:intergenic
TTAGGAATTGAAAGGGAATT+AGG 0.271789 2:+81503369 None:intergenic
ACCTTTAGAGGTCAACTTAT+AGG 0.277223 2:+81501836 None:intergenic
AGGCTGCAATAATGAGGATT+TGG 0.297552 2:-81502933 MsG0280011255.01.T01:CDS
TGAAAACTTTGGGTCTAGTT+TGG 0.299875 2:-81503109 MsG0280011255.01.T01:CDS
CCCAACACCTCCATGGATTA+AGG 0.301456 2:-81503310 MsG0280011255.01.T01:CDS
TGTGAAGGCTTTCAAGTTTG+TGG 0.322530 2:+81503163 None:intergenic
TTTGCCTCTGAGTTCTTTAC+CGG 0.328116 2:+81503206 None:intergenic
TCAGAATGGTCACATTGTTT+TGG 0.335490 2:+81503240 None:intergenic
AATCTTCGTAGAACCTTTAG+AGG 0.341041 2:+81501824 None:intergenic
CAGCTTCCTTTCTGTTCTGA+AGG 0.347240 2:+81498178 None:intergenic
ATGTTGTGAATCAAATTAAA+AGG 0.352074 2:-81502879 MsG0280011255.01.T01:CDS
GTCTAGTTTGGAAAATTTGA+TGG 0.361228 2:-81503097 MsG0280011255.01.T01:CDS
ACATTATCATCATCGTTGTT+AGG 0.376633 2:+81503351 None:intergenic
GTGAAGGCTTTCAAGTTTGT+GGG 0.376798 2:+81503164 None:intergenic
GCCTTAATCCATGGAGGTGT+TGG 0.377803 2:+81503309 None:intergenic
TCACAAGACTCAAACTCAAA+TGG 0.385883 2:-81503145 MsG0280011255.01.T01:CDS
CATTCTGATAAAGCTTTAAC+CGG 0.393571 2:-81503225 MsG0280011255.01.T01:CDS
GAGACTTGCCTTCAGTTCAT+TGG 0.394056 2:+81500896 None:intergenic
CCTTAATCCATGGAGGTGTT+GGG 0.398394 2:+81503310 None:intergenic
TCTACCTTTAGTAAACTTGC+AGG 0.405913 2:+81497736 None:intergenic
AGACTGGAGGCTTGGTTGTA+TGG 0.407943 2:-81501896 MsG0280011255.01.T01:CDS
AATTGAGAAGTTGGTGGGGT+TGG 0.409442 2:+81503274 None:intergenic
TTGATAAGATGTTGCTTCAA+AGG 0.424384 2:-81502966 MsG0280011255.01.T01:CDS
TAATTTGATTCACAACATCT+TGG 0.429176 2:+81502884 None:intergenic
CACAAGACTCAAACTCAAAT+GGG 0.432739 2:-81503144 MsG0280011255.01.T01:CDS
CGGTTAAAGCTTTATCAGAA+TGG 0.434311 2:+81503226 None:intergenic
TGACAGAACATGAATAGTTA+AGG 0.445167 2:+81503451 None:intergenic
GTGCAAGATATCCTAGACTT+AGG 0.445914 2:-81500843 MsG0280011255.01.T01:CDS
GGAAGAAACAGAGGACTTCA+AGG 0.448661 2:-81501014 MsG0280011255.01.T01:CDS
AGCTTCCTTTCTGTTCTGAA+GGG 0.450978 2:+81498179 None:intergenic
ACCTATAAGTTGACCTCTAA+AGG 0.453583 2:-81501837 MsG0280011255.01.T01:intron
GGCTGCAATAATGAGGATTT+GGG 0.455647 2:-81502932 MsG0280011255.01.T01:CDS
TGAATCAAATTAAAAGGACT+TGG 0.457350 2:-81502873 MsG0280011255.01.T01:CDS
CAACGTTGGAATTGAGAAGT+TGG 0.460578 2:+81503265 None:intergenic
GATGCTCTTGTGGTTTATAG+AGG 0.463981 2:-81501864 MsG0280011255.01.T01:CDS
ATACTCTCTGTCTCATGATA+AGG 0.464484 2:-81497478 MsG0280011255.01.T01:three_prime_UTR
AAGAGTGGAGCAATTGAAGT+GGG 0.476149 2:-81497672 MsG0280011255.01.T01:three_prime_UTR
TGGTGGGGTTGGAGAAGAAG+AGG 0.482517 2:+81503285 None:intergenic
AGATGTTGCTTCAAAGGTTG+AGG 0.483659 2:-81502960 MsG0280011255.01.T01:CDS
CATCGTTGTTAGGAATTGAA+AGG 0.489962 2:+81503361 None:intergenic
ATGTGTGAATAGACGAAGAC+TGG 0.497375 2:-81501912 MsG0280011255.01.T01:intron
TGCAAGATATCCTAGACTTA+GGG 0.499512 2:-81500842 MsG0280011255.01.T01:intron
ATCGTTGTTAGGAATTGAAA+GGG 0.505389 2:+81503362 None:intergenic
ATCAAATTAAAAGGACTTGG+AGG 0.513431 2:-81502870 MsG0280011255.01.T01:CDS
TTTGAGTTTGAGTCTTGTGA+AGG 0.523941 2:+81503148 None:intergenic
AATAATGAGGATTTGGGTCA+AGG 0.537678 2:-81502926 MsG0280011255.01.T01:CDS
GAGTAAGAAGGATGCTCTTG+TGG 0.546986 2:-81501874 MsG0280011255.01.T01:CDS
ATATCCTGCAAGTTTACTAA+AGG 0.553688 2:-81497740 MsG0280011255.01.T01:three_prime_UTR
CGTTGGAATTGAGAAGTTGG+TGG 0.561714 2:+81503268 None:intergenic
GGAAACCCTTCAGAACAGAA+AGG 0.562622 2:-81498184 MsG0280011255.01.T01:CDS
ATAGACGAAGACTGGAGGCT+TGG 0.562869 2:-81501904 MsG0280011255.01.T01:intron
TCAAATCCCCAACACCTCCA+TGG 0.565297 2:-81503317 MsG0280011255.01.T01:CDS
CTTAATCCATGGAGGTGTTG+GGG 0.565363 2:+81503311 None:intergenic
AGAAGAGGAGCCTTAATCCA+TGG 0.571644 2:+81503300 None:intergenic
GTTGGAATTGAGAAGTTGGT+GGG 0.573563 2:+81503269 None:intergenic
ATGTCTTATCTCGTCAAACA+TGG 0.574729 2:+81498075 None:intergenic
ACCTTCTCATCTCTCTCCCA+TGG 0.576203 2:+81503042 None:intergenic
TTACAACATATTTAACCACT+AGG 0.580124 2:+81497514 None:intergenic
CTTGGTTGTATGGAGTAAGA+AGG 0.580712 2:-81501886 MsG0280011255.01.T01:CDS
TGAGACAGAGAGTATAATGA+AGG 0.581590 2:+81497486 None:intergenic
AACAATGGCCAATGAACTGA+AGG 0.583461 2:-81500904 MsG0280011255.01.T01:CDS
GACTACTACACCCTAAGTCT+AGG 0.583482 2:+81500832 None:intergenic
AAATACTGACAATGAAACAA+TGG 0.590018 2:-81500919 MsG0280011255.01.T01:CDS
GAGGACTAATGAGCTTGCCA+TGG 0.601370 2:-81502851 MsG0280011255.01.T01:intron
GCCATGGGAGAGAGATGAGA+AGG 0.603189 2:-81503043 MsG0280011255.01.T01:CDS
AGAGTGGAGCAATTGAAGTG+GGG 0.606742 2:-81497671 MsG0280011255.01.T01:three_prime_UTR
GAGAAAAGAAAGAATGCCAT+GGG 0.608902 2:-81503058 MsG0280011255.01.T01:CDS
TAAGAGTGGAGCAATTGAAG+TGG 0.609964 2:-81497673 MsG0280011255.01.T01:three_prime_UTR
TGAAAAGCTATTCTGCAATG+AGG 0.610254 2:-81497781 MsG0280011255.01.T01:three_prime_UTR
CAGCTGCTATCTTAAAGCTG+TGG 0.612102 2:-81500986 MsG0280011255.01.T01:CDS
TGAGAAAAGAAAGAATGCCA+TGG 0.614089 2:-81503059 MsG0280011255.01.T01:CDS
GGAGTGAGGCTGCAATAATG+AGG 0.620980 2:-81502939 MsG0280011255.01.T01:CDS
GCTTCAAAGGTTGAGGAGTG+AGG 0.624670 2:-81502953 MsG0280011255.01.T01:CDS
TAATATGAAGGAAGAAACAG+AGG 0.658565 2:-81501023 MsG0280011255.01.T01:intron
AAATTTGATGGAGAATGAGA+AGG 0.659976 2:-81503085 MsG0280011255.01.T01:CDS
TTTCAGAGTGGTTAAAGACG+AGG 0.664079 2:-81497642 MsG0280011255.01.T01:three_prime_UTR
GTGGGGTTTCACTTTCAGAG+TGG 0.670111 2:-81497654 MsG0280011255.01.T01:three_prime_UTR
TTGGAATTGAGAAGTTGGTG+GGG 0.677831 2:+81503270 None:intergenic
TGTGAATAGACGAAGACTGG+AGG 0.684763 2:-81501909 MsG0280011255.01.T01:intron
AGAGGAGCCTTAATCCATGG+AGG 0.743209 2:+81503303 None:intergenic
TTAACCGGTAAAGAACTCAG+AGG 0.763387 2:-81503210 MsG0280011255.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCTTAAATTAAATAATATA+TGG - Chr2:81500187-81500206 MsG0280011255.01.T01:intron 10.0%
!!! ATTAAAAGTTTGTAATTTTA+GGG - Chr2:81500825-81500844 MsG0280011255.01.T01:intron 10.0%
!! AAATGCTATTAAAATTAAGT+AGG - Chr2:81503338-81503357 MsG0280011255.01.T01:CDS 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + Chr2:81503357-81503338 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - Chr2:81503339-81503358 MsG0280011255.01.T01:CDS 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + Chr2:81503358-81503339 None:intergenic 15.0%
!! AATTATTGAGAAAATTTACA+AGG - Chr2:81500535-81500554 MsG0280011255.01.T01:intron 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + Chr2:81503118-81503137 None:intergenic 15.0%
!! ATTCAATTAATCATAATTGT+TGG + Chr2:81497902-81497921 None:intergenic 15.0%
!! CGTAAAAAATGTTATATTAT+CGG - Chr2:81497928-81497947 MsG0280011255.01.T01:intron 15.0%
!! TTAATGAAAAATACGTATAA+AGG + Chr2:81501584-81501603 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - Chr2:81503249-81503268 MsG0280011255.01.T01:CDS 15.0%
!! TTGTAAATTAATAAATGCTT+TGG - Chr2:81499176-81499195 MsG0280011255.01.T01:intron 15.0%
!! TTGTATTAATTTCAAATGAT+TGG - Chr2:81499549-81499568 MsG0280011255.01.T01:intron 15.0%
!!! AAAATTACAAACTTTTAATC+AGG + Chr2:81500824-81500843 None:intergenic 15.0%
!!! AAATATTTTTTACAGATTCA+GGG + Chr2:81500701-81500720 None:intergenic 15.0%
!!! ATTTTCTATCTTTAATATGA+AGG - Chr2:81499274-81499293 MsG0280011255.01.T01:intron 15.0%
!!! GATTAAAAGTTTGTAATTTT+AGG - Chr2:81500824-81500843 MsG0280011255.01.T01:intron 15.0%
!!! TAAATATTTTTTACAGATTC+AGG + Chr2:81500702-81500721 None:intergenic 15.0%
!!! TGTAAATTTTCTCAATAATT+AGG + Chr2:81500535-81500554 None:intergenic 15.0%
!!! TTGGATTAACATTTTAATAT+AGG + Chr2:81502372-81502391 None:intergenic 15.0%
!! AAAATACGTATAAAGGAAAT+AGG + Chr2:81501577-81501596 None:intergenic 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + Chr2:81502988-81503007 None:intergenic 20.0%
!! AAATTCTTATGAAATGAATG+GGG - Chr2:81498536-81498555 MsG0280011255.01.T01:intron 20.0%
!! AACATCAAAGTTATTCTTAT+TGG + Chr2:81499749-81499768 None:intergenic 20.0%
!! ACAAATTCTTATGAAATGAA+TGG - Chr2:81498534-81498553 MsG0280011255.01.T01:intron 20.0%
!! ATAAGGAAATCATAATTAGT+TGG - Chr2:81499153-81499172 MsG0280011255.01.T01:intron 20.0%
!! ATATCCTTTATGTCAAAATA+TGG - Chr2:81497490-81497509 MsG0280011255.01.T01:three_prime_UTR 20.0%
!! ATGTTGTGAATCAAATTAAA+AGG - Chr2:81497430-81497449 MsG0280011255.01.T01:intron 20.0%
!! CAAATTCTTATGAAATGAAT+GGG - Chr2:81498535-81498554 MsG0280011255.01.T01:intron 20.0%
!! CAATATACATCATCTTAAAA+GGG - Chr2:81499041-81499060 MsG0280011255.01.T01:intron 20.0%
!! CTGGAAATTTGTATATAAAT+GGG - Chr2:81498140-81498159 MsG0280011255.01.T01:CDS 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + Chr2:81502989-81503008 None:intergenic 20.0%
!! TTTGGAAAGATAAGTATTAA+TGG + Chr2:81501131-81501150 None:intergenic 20.0%
!!! AATGTTTTTGTTTATAAGAG+TGG - Chr2:81502622-81502641 MsG0280011255.01.T01:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + Chr2:81503083-81503102 None:intergenic 20.0%
!!! AGGTGTTTTTTATATAGTTT+TGG - Chr2:81502851-81502870 MsG0280011255.01.T01:intron 20.0%
!!! AGTTTTACATACTACTATAT+AGG - Chr2:81499814-81499833 MsG0280011255.01.T01:intron 20.0%
!!! CATAAATATTTTTTACCTAG+TGG - Chr2:81502780-81502799 MsG0280011255.01.T01:intron 20.0%
!!! GAAAATTTACTTTTCATTGT+GGG - Chr2:81499439-81499458 MsG0280011255.01.T01:intron 20.0%
!!! GAGATTCTTTTTACAATTTT+AGG - Chr2:81502104-81502123 MsG0280011255.01.T01:intron 20.0%
!!! GGTGTTTTTTATATAGTTTT+GGG - Chr2:81502852-81502871 MsG0280011255.01.T01:CDS 20.0%
!!! GTTTTACATACTACTATATA+GGG - Chr2:81499815-81499834 MsG0280011255.01.T01:intron 20.0%
!!! TAAATATAATAGCAGCATTT+TGG + Chr2:81501149-81501168 None:intergenic 20.0%
!!! TAATTTTTTGAAGGTGAAAA+AGG - Chr2:81497290-81497309 MsG0280011255.01.T01:intron 20.0%
!!! TATTGATAATGTAGAGAAAT+AGG + Chr2:81500666-81500685 None:intergenic 20.0%
!!! TGAAAATTTACTTTTCATTG+TGG - Chr2:81499438-81499457 MsG0280011255.01.T01:intron 20.0%
! AAATACTGACAATGAAACAA+TGG - Chr2:81499390-81499409 MsG0280011255.01.T01:intron 25.0%
! AAGGATATCAAATTTAACCA+TGG + Chr2:81497478-81497497 None:intergenic 25.0%
! AATATATCCATCGCATAATA+TGG + Chr2:81498365-81498384 None:intergenic 25.0%
! AATTTCGTCCTTATTATTGT+AGG + Chr2:81500897-81500916 None:intergenic 25.0%
! AATTTGTGCGAAAAACTATA+GGG + Chr2:81503413-81503432 None:intergenic 25.0%
! ACAGAATATAACAAATGCAA+AGG + Chr2:81500163-81500182 None:intergenic 25.0%
! AGAAATACATAGATTGGAAA+AGG - Chr2:81500079-81500098 MsG0280011255.01.T01:intron 25.0%
! AGTCAATGATATCATGTATA+CGG - Chr2:81499496-81499515 MsG0280011255.01.T01:intron 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + Chr2:81502955-81502974 None:intergenic 25.0%
! CAAAAAAAACGCAACAAAAA+AGG + Chr2:81500437-81500456 None:intergenic 25.0%
! CACTATATATTTATGACGAT+GGG + Chr2:81501881-81501900 None:intergenic 25.0%
! CAGAATATAACAAATGCAAA+GGG + Chr2:81500162-81500181 None:intergenic 25.0%
! CCAATATACATCATCTTAAA+AGG - Chr2:81499040-81499059 MsG0280011255.01.T01:intron 25.0%
! CTCAAAAAGTTGAAAACTTT+GGG - Chr2:81497190-81497209 MsG0280011255.01.T01:intron 25.0%
! CTCAATCAGTAACTTTAATA+AGG - Chr2:81499136-81499155 MsG0280011255.01.T01:intron 25.0%
! GCTGGAAATTTGTATATAAA+TGG - Chr2:81498139-81498158 MsG0280011255.01.T01:CDS 25.0%
! TAACAATGTGTTTATAAGTG+AGG + Chr2:81497768-81497787 None:intergenic 25.0%
! TAATTTGATTCACAACATCT+TGG + Chr2:81497428-81497447 None:intergenic 25.0%
! TACAATAATAAGGACGAAAT+TGG - Chr2:81500896-81500915 MsG0280011255.01.T01:CDS 25.0%
! TACAGACAGTATTCATTTAA+AGG - Chr2:81501923-81501942 MsG0280011255.01.T01:intron 25.0%
! TATCAATTTAGTTGTCAACA+CGG + Chr2:81501073-81501092 None:intergenic 25.0%
! TATGCTATTATTATTTACCG+TGG - Chr2:81501400-81501419 MsG0280011255.01.T01:intron 25.0%
! TCAAGAATAGTGATTTAAGA+AGG - Chr2:81499109-81499128 MsG0280011255.01.T01:intron 25.0%
! TCACTATATATTTATGACGA+TGG + Chr2:81501882-81501901 None:intergenic 25.0%
! TCTCAAAAAGTTGAAAACTT+TGG - Chr2:81497189-81497208 MsG0280011255.01.T01:intron 25.0%
! TGAATCAAATTAAAAGGACT+TGG - Chr2:81497436-81497455 MsG0280011255.01.T01:intron 25.0%
! TTACAACATATTTAACCACT+AGG + Chr2:81502798-81502817 None:intergenic 25.0%
!! GAACTAATATTTCTATCCAA+AGG + Chr2:81502408-81502427 None:intergenic 25.0%
!! GCATTAATTTTCATATTGTC+TGG + Chr2:81502160-81502179 None:intergenic 25.0%
!! GTGATACCATCTTAAAATTT+TGG + Chr2:81498178-81498197 None:intergenic 25.0%
!! TAATTTGTGCGAAAAACTAT+AGG + Chr2:81503414-81503433 None:intergenic 25.0%
!! TCATCTTACATAAATTTTGC+TGG + Chr2:81502719-81502738 None:intergenic 25.0%
!! TGCAATTTTCAATCAAAACT+AGG + Chr2:81501553-81501572 None:intergenic 25.0%
!! TGGTAGTTTGTAATTATCAA+AGG + Chr2:81500566-81500585 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - Chr2:81503278-81503297 MsG0280011255.01.T01:CDS 25.0%
!!! AATTAGGTTTGTTGTGATTA+AGG + Chr2:81496927-81496946 None:intergenic 25.0%
!!! ATAATTTTAGGGACCAAAAT+GGG + Chr2:81500632-81500651 None:intergenic 25.0%
!!! CCTTTTAAGATGATGTATAT+TGG + Chr2:81499043-81499062 None:intergenic 25.0%
!!! CTATCCATATTTTGACATAA+AGG + Chr2:81497497-81497516 None:intergenic 25.0%
!!! CTTTTTTGTTGCGTTTTTTT+TGG - Chr2:81500435-81500454 MsG0280011255.01.T01:intron 25.0%
!!! TAAGAATTTGTTTTTCGACT+AGG + Chr2:81498525-81498544 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - Chr2:81503277-81503296 MsG0280011255.01.T01:CDS 25.0%
!!! TATAATTTTAGGGACCAAAA+TGG + Chr2:81500633-81500652 None:intergenic 25.0%
!!! TATTGATAATGCAGAGTATT+AGG - Chr2:81500861-81500880 MsG0280011255.01.T01:CDS 25.0%
!!! TCATTTTCAAGCATAGATAT+TGG + Chr2:81501722-81501741 None:intergenic 25.0%
!!! TGAGAAGGTTAATTTTTTGA+AGG - Chr2:81497281-81497300 MsG0280011255.01.T01:intron 25.0%
!!! TTAATAAATGCTTTGGAGTA+TGG - Chr2:81499183-81499202 MsG0280011255.01.T01:intron 25.0%
!!! TTGACTTGTAGATAGTTATT+CGG - Chr2:81498315-81498334 MsG0280011255.01.T01:intron 25.0%
!!! TTGATGGTCGTATAATTTTA+GGG + Chr2:81500643-81500662 None:intergenic 25.0%
!!! TTTTTCGACTAGGAATATAA+CGG + Chr2:81498515-81498534 None:intergenic 25.0%
AAAGCTTTCATTGTGAGATT+TGG - Chr2:81500122-81500141 MsG0280011255.01.T01:intron 30.0%
AAATGGGTATTTAATCTACC+CGG + Chr2:81500616-81500635 None:intergenic 30.0%
AAATTTGATGGAGAATGAGA+AGG - Chr2:81497224-81497243 MsG0280011255.01.T01:intron 30.0%
AAGAATCTCAGTTATACAGT+AGG + Chr2:81502093-81502112 None:intergenic 30.0%
ACATTATCATCATCGTTGTT+AGG + Chr2:81496961-81496980 None:intergenic 30.0%
AGAAATAGAGAGATCAACAA+TGG - Chr2:81500225-81500244 MsG0280011255.01.T01:intron 30.0%
ATATCCTGCAAGTTTACTAA+AGG - Chr2:81502569-81502588 MsG0280011255.01.T01:intron 30.0%
ATCAAATTAAAAGGACTTGG+AGG - Chr2:81497439-81497458 MsG0280011255.01.T01:intron 30.0%
ATCGTTGTTAGGAATTGAAA+GGG + Chr2:81496950-81496969 None:intergenic 30.0%
ATTCAACGAGTTAGTTATAG+AGG + Chr2:81498047-81498066 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + Chr2:81503215-81503234 None:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG + Chr2:81502956-81502975 None:intergenic 30.0%
CATACAGCTAATTATGCATA+AGG + Chr2:81498259-81498278 None:intergenic 30.0%
CTGATACCATGTTAAACTTT+GGG - Chr2:81497695-81497714 MsG0280011255.01.T01:three_prime_UTR 30.0%
GAATAGTGATTTAAGAAGGA+TGG - Chr2:81499113-81499132 MsG0280011255.01.T01:intron 30.0%
GAATGTGATAGATTATTGGA+TGG - Chr2:81498711-81498730 MsG0280011255.01.T01:intron 30.0%
GATAGATTATTGGATGGTTT+AGG - Chr2:81498717-81498736 MsG0280011255.01.T01:intron 30.0%
GCAAAAATTGCAATCAAGTA+TGG - Chr2:81499361-81499380 MsG0280011255.01.T01:intron 30.0%
GCTAATCTAAACAACATTGT+TGG + Chr2:81499620-81499639 None:intergenic 30.0%
GTCAATGATATCATGTATAC+GGG - Chr2:81499497-81499516 MsG0280011255.01.T01:intron 30.0%
GTGGAACTTTAACAGAATTT+AGG - Chr2:81499992-81500011 MsG0280011255.01.T01:intron 30.0%
TAATATGAAGGAAGAAACAG+AGG - Chr2:81499286-81499305 MsG0280011255.01.T01:intron 30.0%
TAATTAGCCATATGCATACA+AGG + Chr2:81499250-81499269 None:intergenic 30.0%
TATCAAAGTTAAATGCTGCA+TGG - Chr2:81500251-81500270 MsG0280011255.01.T01:intron 30.0%
TCAGTTGATCAACTAAAAGA+GGG - Chr2:81501376-81501395 MsG0280011255.01.T01:intron 30.0%
TCTCTCTGTTGATATTTGTA+GGG - Chr2:81500735-81500754 MsG0280011255.01.T01:intron 30.0%
TCTGATACCATGTTAAACTT+TGG - Chr2:81497694-81497713 MsG0280011255.01.T01:three_prime_UTR 30.0%
TGACAGAACATGAATAGTTA+AGG + Chr2:81496861-81496880 None:intergenic 30.0%
TTAGGAATTGAAAGGGAATT+AGG + Chr2:81496943-81496962 None:intergenic 30.0%
TTATGCTTGATGCTGAAAAA+GGG - Chr2:81499006-81499025 MsG0280011255.01.T01:intron 30.0%
TTCAGTTGATCAACTAAAAG+AGG - Chr2:81501375-81501394 MsG0280011255.01.T01:intron 30.0%
TTCTTAGCAATTCAATGTCA+TGG - Chr2:81500483-81500502 MsG0280011255.01.T01:intron 30.0%
TTCTTGATACCAATACTTCT+AGG + Chr2:81499096-81499115 None:intergenic 30.0%
TTGTGTATTAGTTCATGTAC+TGG - Chr2:81499701-81499720 MsG0280011255.01.T01:intron 30.0%
TTTAACCTGTGAAAAAACCT+AGG + Chr2:81501798-81501817 None:intergenic 30.0%
TTTATGCTTGATGCTGAAAA+AGG - Chr2:81499005-81499024 MsG0280011255.01.T01:intron 30.0%
! AATGTAGAGAAATAGGTTGA+TGG + Chr2:81500659-81500678 None:intergenic 30.0%
! ATTTTCGCTATCTTTTCTGA+CGG + Chr2:81501442-81501461 None:intergenic 30.0%
! CATTCTGATAAAGCTTTAAC+CGG - Chr2:81497084-81497103 MsG0280011255.01.T01:intron 30.0%
! GAAACACGACACTTATATTT+TGG - Chr2:81501982-81502001 MsG0280011255.01.T01:intron 30.0%
! GGTAGATTAAATACCCATTT+TGG - Chr2:81500616-81500635 MsG0280011255.01.T01:intron 30.0%
! GTCTAGTTTGGAAAATTTGA+TGG - Chr2:81497212-81497231 MsG0280011255.01.T01:intron 30.0%
! GTTTTCTTAGAGAAATGAAG+TGG - Chr2:81502479-81502498 MsG0280011255.01.T01:intron 30.0%
! TCATTTCGTCAAGCTTATTT+TGG + Chr2:81500023-81500042 None:intergenic 30.0%
! TGTTTTATGTTCAATAGTCG+CGG - Chr2:81499649-81499668 MsG0280011255.01.T01:intron 30.0%
! TTGATAAGATGTTGCTTCAA+AGG - Chr2:81497343-81497362 MsG0280011255.01.T01:intron 30.0%
!! ACGACACTTATATTTTGGAA+CGG - Chr2:81501987-81502006 MsG0280011255.01.T01:intron 30.0%
!! CCTCAACCAAAATTTTAAGA+TGG - Chr2:81498169-81498188 MsG0280011255.01.T01:CDS 30.0%
!! GTTTTCTGGTCAAATGAAAA+GGG + Chr2:81502044-81502063 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - Chr2:81503370-81503389 MsG0280011255.01.T01:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + Chr2:81503389-81503370 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - Chr2:81503369-81503388 MsG0280011255.01.T01:CDS 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + Chr2:81503388-81503369 None:intergenic 30.0%
!! TTTGTGGGCTATTTTCTTTA+AGG + Chr2:81497133-81497152 None:intergenic 30.0%
!!! CCATCTTAAAATTTTGGTTG+AGG + Chr2:81498172-81498191 None:intergenic 30.0%
!!! GTTGATGGTCGTATAATTTT+AGG + Chr2:81500644-81500663 None:intergenic 30.0%
AAATAATGACAGATGAGGAG+AGG - Chr2:81500301-81500320 MsG0280011255.01.T01:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG - Chr2:81503354-81503373 MsG0280011255.01.T01:CDS 35.0%
AAGTAGGGACTAAACTTACA+AGG + Chr2:81503373-81503354 None:intergenic 35.0%
AATAATGAGGATTTGGGTCA+AGG - Chr2:81497383-81497402 MsG0280011255.01.T01:intron 35.0%
AATCTTCGTAGAACCTTTAG+AGG + Chr2:81498488-81498507 None:intergenic 35.0%
ACCGTGGAAAAAACTATAGT+CGG - Chr2:81501416-81501435 MsG0280011255.01.T01:intron 35.0%
ACTACCACTTAGTTACAATG+TGG - Chr2:81500579-81500598 MsG0280011255.01.T01:intron 35.0%
ATACTCTCTGTCTCATGATA+AGG - Chr2:81502831-81502850 MsG0280011255.01.T01:intron 35.0%
ATCAATCTACAACGCATACA+TGG - Chr2:81499070-81499089 MsG0280011255.01.T01:intron 35.0%
ATGCTCCAAATGTATATGTG+AGG + Chr2:81497608-81497627 None:intergenic 35.0%
ATGGTGAACTAACATACTTC+AGG - Chr2:81498867-81498886 MsG0280011255.01.T01:intron 35.0%
ATGTCTTATCTCGTCAAACA+TGG + Chr2:81502237-81502256 None:intergenic 35.0%
ATTGAAGAACTGCATCAAGA+AGG + Chr2:81498940-81498959 None:intergenic 35.0%
CAAAGGTAGAAGACTGATAT+TGG + Chr2:81502391-81502410 None:intergenic 35.0%
CAATATCAGTCTTCTACCTT+TGG - Chr2:81502389-81502408 MsG0280011255.01.T01:intron 35.0%
CACAAGACTCAAACTCAAAT+GGG - Chr2:81497165-81497184 MsG0280011255.01.T01:intron 35.0%
CATCGTTGTTAGGAATTGAA+AGG + Chr2:81496951-81496970 None:intergenic 35.0%
CTCTCTCTGTTGATATTTGT+AGG - Chr2:81500734-81500753 MsG0280011255.01.T01:intron 35.0%
CTTAAAAGTCATACAGATGC+TGG + Chr2:81497845-81497864 None:intergenic 35.0%
CTTAGAGTGGGAAATATTAC+AGG + Chr2:81501180-81501199 None:intergenic 35.0%
CTTGGAAATAATGACAGATG+AGG - Chr2:81500296-81500315 MsG0280011255.01.T01:intron 35.0%
GAGAAAAGAAAGAATGCCAT+GGG - Chr2:81497251-81497270 MsG0280011255.01.T01:intron 35.0%
GAGGGAATGTGATAGATTAT+TGG - Chr2:81498707-81498726 MsG0280011255.01.T01:intron 35.0%
GATAAGAGTAGAGAGAAAGA+AGG + Chr2:81497544-81497563 None:intergenic 35.0%
GGAAGCAGAAATACATAGAT+TGG - Chr2:81500073-81500092 MsG0280011255.01.T01:intron 35.0%
GTATCTGTACTTAACCACAA+CGG - Chr2:81501026-81501045 MsG0280011255.01.T01:intron 35.0%
GTCTAACCCAAAGTTTAACA+TGG + Chr2:81497704-81497723 None:intergenic 35.0%
TAATACACAAGCCAAAAGAG+CGG + Chr2:81499691-81499710 None:intergenic 35.0%
TAGAGCAAGAGAAATTGTTG+AGG - Chr2:81497514-81497533 MsG0280011255.01.T01:three_prime_UTR 35.0%
TATCCATCGCATAATATGGA+AGG + Chr2:81498361-81498380 None:intergenic 35.0%
TATCCTTCCTTGTATGCATA+TGG - Chr2:81499240-81499259 MsG0280011255.01.T01:intron 35.0%
TCACAAGACTCAAACTCAAA+TGG - Chr2:81497164-81497183 MsG0280011255.01.T01:intron 35.0%
TCATCTTCAATCCCATCTTT+CGG + Chr2:81500334-81500353 None:intergenic 35.0%
TCATGCTAGTGCAAAACTAA+CGG - Chr2:81498844-81498863 MsG0280011255.01.T01:intron 35.0%
TCTACCTTTAGTAAACTTGC+AGG + Chr2:81502576-81502595 None:intergenic 35.0%
TCTCTTGAAATGCAGAGAAT+TGG - Chr2:81501492-81501511 MsG0280011255.01.T01:intron 35.0%
TGAAAACTTTGGGTCTAGTT+TGG - Chr2:81497200-81497219 MsG0280011255.01.T01:intron 35.0%
TGAAAAGCTATTCTGCAATG+AGG - Chr2:81502528-81502547 MsG0280011255.01.T01:intron 35.0%
TGAATGTAGCTTCTTAGAGT+GGG + Chr2:81501192-81501211 None:intergenic 35.0%
TGAGAAAAGAAAGAATGCCA+TGG - Chr2:81497250-81497269 MsG0280011255.01.T01:intron 35.0%
TGCAAGATATCCTAGACTTA+GGG - Chr2:81499467-81499486 MsG0280011255.01.T01:intron 35.0%
TGCTCCAAATGTATATGTGA+GGG + Chr2:81497607-81497626 None:intergenic 35.0%
TGTCAAGTTCCGCATTAAAT+GGG - Chr2:81498110-81498129 MsG0280011255.01.T01:CDS 35.0%
TTAATAACGACACAACCAGA+GGG - Chr2:81500793-81500812 MsG0280011255.01.T01:intron 35.0%
TTCACTTCTTGAGTTTCGAT+TGG - Chr2:81500389-81500408 MsG0280011255.01.T01:intron 35.0%
TTCATTTGACCAGAAAACGT+GGG - Chr2:81502046-81502065 MsG0280011255.01.T01:intron 35.0%
TTCCGCATTAAATGGGATAT+GGG - Chr2:81498117-81498136 MsG0280011255.01.T01:CDS 35.0%
TTGAATGTAGCTTCTTAGAG+TGG + Chr2:81501193-81501212 None:intergenic 35.0%
TTGTCAAGTTCCGCATTAAA+TGG - Chr2:81498109-81498128 MsG0280011255.01.T01:CDS 35.0%
TTTAATAACGACACAACCAG+AGG - Chr2:81500792-81500811 MsG0280011255.01.T01:intron 35.0%
TTTCATTTGACCAGAAAACG+TGG - Chr2:81502045-81502064 MsG0280011255.01.T01:intron 35.0%
! AAAGTGACTTGATAGCATAG+GGG - Chr2:81497632-81497651 MsG0280011255.01.T01:three_prime_UTR 35.0%
! ACCTATAAGTTGACCTCTAA+AGG - Chr2:81498472-81498491 MsG0280011255.01.T01:intron 35.0%
! ACCTTTAGAGGTCAACTTAT+AGG + Chr2:81498476-81498495 None:intergenic 35.0%
! CAAAGTGACTTGATAGCATA+GGG - Chr2:81497631-81497650 MsG0280011255.01.T01:three_prime_UTR 35.0%
! CAGCATCTGTATGACTTTTA+AGG - Chr2:81497843-81497862 MsG0280011255.01.T01:intron 35.0%
! CATCTACACTTCACACTTTT+TGG - Chr2:81501327-81501346 MsG0280011255.01.T01:intron 35.0%
! CGGTTAAAGCTTTATCAGAA+TGG + Chr2:81497086-81497105 None:intergenic 35.0%
! CTTCAGCAAGCAACATATTT+TGG - Chr2:81502273-81502292 MsG0280011255.01.T01:intron 35.0%
! GCAGTTTTTACCTTACAAGT+CGG + Chr2:81497585-81497604 None:intergenic 35.0%
! TAATGCAGAGTATTAGGTTG+AGG - Chr2:81500867-81500886 MsG0280011255.01.T01:CDS 35.0%
! TCAAAGTGACTTGATAGCAT+AGG - Chr2:81497630-81497649 MsG0280011255.01.T01:three_prime_UTR 35.0%
! TCAGAATGGTCACATTGTTT+TGG + Chr2:81497072-81497091 None:intergenic 35.0%
! TGAGACAGAGAGTATAATGA+AGG + Chr2:81502826-81502845 None:intergenic 35.0%
! TTACCAACTCATTTTGTCCT+TGG - Chr2:81498905-81498924 MsG0280011255.01.T01:intron 35.0%
! TTTGAGTTTGAGTCTTGTGA+AGG + Chr2:81497164-81497183 None:intergenic 35.0%
!! AAGTTGTCTAGTTCTTGGTA+AGG - Chr2:81500355-81500374 MsG0280011255.01.T01:intron 35.0%
!! AGGACAAAATGAGTTGGTAA+AGG + Chr2:81498905-81498924 None:intergenic 35.0%
!! ATGAGAAGTTGTCTAGTTCT+TGG - Chr2:81500350-81500369 MsG0280011255.01.T01:intron 35.0%
!! CGTTTTCTGGTCAAATGAAA+AGG + Chr2:81502045-81502064 None:intergenic 35.0%
!! GATAATTCCTCTGAAGTTGT+TGG + Chr2:81500969-81500988 None:intergenic 35.0%
!! GGACAAAATGAGTTGGTAAA+GGG + Chr2:81498904-81498923 None:intergenic 35.0%
!! TTAGATGAGTGATGGACTAA+TGG + Chr2:81497793-81497812 None:intergenic 35.0%
!! TTTACTTTTCATTGTGGGTG+AGG - Chr2:81499444-81499463 MsG0280011255.01.T01:intron 35.0%
!!! ACATTGTTTTGGTTCAACGT+TGG + Chr2:81497061-81497080 None:intergenic 35.0%
!!! CACTTATATTTTGGAACGGA+AGG - Chr2:81501991-81502010 MsG0280011255.01.T01:intron 35.0%
!!! CAGGCAAATCAGTTTTGAAT+GGG + Chr2:81501620-81501639 None:intergenic 35.0%
AACAATGGCCAATGAACTGA+AGG - Chr2:81499405-81499424 MsG0280011255.01.T01:intron 40.0%
AAGAACTGCATCAAGAAGGA+GGG + Chr2:81498936-81498955 None:intergenic 40.0%
AAGAGTGGAGCAATTGAAGT+GGG - Chr2:81502637-81502656 MsG0280011255.01.T01:intron 40.0%
AAGTTATACTTGCTCCGTTG+TGG + Chr2:81501043-81501062 None:intergenic 40.0%
AATCTGCAACTCTTCTTGGA+AGG + Chr2:81499850-81499869 None:intergenic 40.0%
ACCAAATCTGCAACTCTTCT+TGG + Chr2:81499854-81499873 None:intergenic 40.0%
ACCACTTAGTTACAATGTGG+AGG - Chr2:81500582-81500601 MsG0280011255.01.T01:intron 40.0%
ACCTGTGAAAAAACCTAGGA+CGG + Chr2:81501794-81501813 None:intergenic 40.0%
ACTGCCCTCACATATACATT+TGG - Chr2:81497600-81497619 MsG0280011255.01.T01:three_prime_UTR 40.0%
AGAGCCTATCCGAAATATGT+TGG + Chr2:81497677-81497696 None:intergenic 40.0%
AGAGGAATGTTTCCGAAAGA+TGG - Chr2:81500319-81500338 MsG0280011255.01.T01:intron 40.0%
AGCCCATATCCCATTTAATG+CGG + Chr2:81498122-81498141 None:intergenic 40.0%
AGGCTGCAATAATGAGGATT+TGG - Chr2:81497376-81497395 MsG0280011255.01.T01:intron 40.0%
AGTCCATCACTCATCTAATG+TGG - Chr2:81497795-81497814 MsG0280011255.01.T01:three_prime_UTR 40.0%
ATGTAGATTAAGCACTCCAC+TGG - Chr2:81500052-81500071 MsG0280011255.01.T01:intron 40.0%
ATGTGTGAATAGACGAAGAC+TGG - Chr2:81498397-81498416 MsG0280011255.01.T01:intron 40.0%
CAACGGATCATTGTATGAGA+GGG - Chr2:81498689-81498708 MsG0280011255.01.T01:intron 40.0%
CAACGTTGGAATTGAGAAGT+TGG + Chr2:81497047-81497066 None:intergenic 40.0%
CAGAATCCATCAAGATTCGT+TGG - Chr2:81498201-81498220 MsG0280011255.01.T01:intron 40.0%
CATACAAGGAAGGATAAGCA+TGG + Chr2:81499236-81499255 None:intergenic 40.0%
CATCCTTCCATATTATGCGA+TGG - Chr2:81498355-81498374 MsG0280011255.01.T01:intron 40.0%
CCACTTAGTTACAATGTGGA+GGG - Chr2:81500583-81500602 MsG0280011255.01.T01:intron 40.0%
CCATGATATGAACTACCAAC+CGG - Chr2:81498665-81498684 MsG0280011255.01.T01:intron 40.0%
CTACCAAGGACAAAATGAGT+TGG + Chr2:81498911-81498930 None:intergenic 40.0%
CTTGGTTGTATGGAGTAAGA+AGG - Chr2:81498423-81498442 MsG0280011255.01.T01:intron 40.0%
GACGATGGGTGATAACTATA+AGG + Chr2:81501867-81501886 None:intergenic 40.0%
GAGCCTATCCGAAATATGTT+GGG + Chr2:81497676-81497695 None:intergenic 40.0%
GAGGAATGTTTCCGAAAGAT+GGG - Chr2:81500320-81500339 MsG0280011255.01.T01:intron 40.0%
GAGGCGATCCTACAATAATA+AGG - Chr2:81500886-81500905 MsG0280011255.01.T01:CDS 40.0%
GATAGTCCAACGAATCTTGA+TGG + Chr2:81498210-81498229 None:intergenic 40.0%
GATGCTCTTGTGGTTTATAG+AGG - Chr2:81498445-81498464 MsG0280011255.01.T01:intron 40.0%
GGAAAAAATTGTCACTGCTG+CGG - Chr2:81497311-81497330 MsG0280011255.01.T01:intron 40.0%
GGCTGCAATAATGAGGATTT+GGG - Chr2:81497377-81497396 MsG0280011255.01.T01:intron 40.0%
GTCCATCACTCATCTAATGT+GGG - Chr2:81497796-81497815 MsG0280011255.01.T01:three_prime_UTR 40.0%
GTGAACTAACATACTTCAGG+AGG - Chr2:81498870-81498889 MsG0280011255.01.T01:intron 40.0%
GTGCAAGATATCCTAGACTT+AGG - Chr2:81499466-81499485 MsG0280011255.01.T01:intron 40.0%
GTTCCGCATTAAATGGGATA+TGG - Chr2:81498116-81498135 MsG0280011255.01.T01:CDS 40.0%
TAAGAGTGGAGCAATTGAAG+TGG - Chr2:81502636-81502655 MsG0280011255.01.T01:intron 40.0%
TAGCCATATGCATACAAGGA+AGG + Chr2:81499246-81499265 None:intergenic 40.0%
TCCAAGAAGAGTTGCAGATT+TGG - Chr2:81499850-81499869 MsG0280011255.01.T01:intron 40.0%
TCCATCACTCATCTAATGTG+GGG - Chr2:81497797-81497816 MsG0280011255.01.T01:three_prime_UTR 40.0%
TGAAATGAATGGGGTGAAGT+TGG - Chr2:81498545-81498564 MsG0280011255.01.T01:intron 40.0%
TTAACCGGTAAAGAACTCAG+AGG - Chr2:81497099-81497118 MsG0280011255.01.T01:intron 40.0%
TTATGATCAGCATTCCAGCT+CGG + Chr2:81498624-81498643 None:intergenic 40.0%
TTTACAATACAGCGTCTCAC+CGG - Chr2:81499768-81499787 MsG0280011255.01.T01:intron 40.0%
TTTCAGAGTGGTTAAAGACG+AGG - Chr2:81502667-81502686 MsG0280011255.01.T01:intron 40.0%
TTTGCCTCTGAGTTCTTTAC+CGG + Chr2:81497106-81497125 None:intergenic 40.0%
! AAGAGTTGCAGATTTGGTAG+AGG - Chr2:81499856-81499875 MsG0280011255.01.T01:intron 40.0%
! ACATCAGCATTGGAAACACA+GGG - Chr2:81501262-81501281 MsG0280011255.01.T01:intron 40.0%
! AGAGTTGCAGATTTGGTAGA+GGG - Chr2:81499857-81499876 MsG0280011255.01.T01:intron 40.0%
! AGATGTTGCTTCAAAGGTTG+AGG - Chr2:81497349-81497368 MsG0280011255.01.T01:intron 40.0%
! AGCTTCCTTTCTGTTCTGAA+GGG + Chr2:81502133-81502152 None:intergenic 40.0%
! CATACATGGCCTAGAAGTAT+TGG - Chr2:81499084-81499103 MsG0280011255.01.T01:intron 40.0%
! CCTTACAAGTCGACTTTCTA+AGG + Chr2:81497736-81497755 None:intergenic 40.0%
! CTATGTATTTCTGCTTCCAG+TGG + Chr2:81500071-81500090 None:intergenic 40.0%
! CTCTGATTTGAAGCTGAAAC+TGG - Chr2:81501690-81501709 MsG0280011255.01.T01:intron 40.0%
! GTTGGAATTGAGAAGTTGGT+GGG + Chr2:81497043-81497062 None:intergenic 40.0%
! GTTTTCATGTTGCGTTGAGT+TGG - Chr2:81499525-81499544 MsG0280011255.01.T01:intron 40.0%
! TACATCAGCATTGGAAACAC+AGG - Chr2:81501261-81501280 MsG0280011255.01.T01:intron 40.0%
! TGAAGTTGTTGGTTAGGCAA+AGG + Chr2:81500958-81500977 None:intergenic 40.0%
!! AGTGTCAAAACCGACTTGTA+AGG - Chr2:81497572-81497591 MsG0280011255.01.T01:three_prime_UTR 40.0%
!! CCTTAGAAAGTCGACTTGTA+AGG - Chr2:81497733-81497752 MsG0280011255.01.T01:three_prime_UTR 40.0%
!! CGACTTTCTAAGGTTCAGTT+AGG + Chr2:81497726-81497745 None:intergenic 40.0%
!! GTGAAGGCTTTCAAGTTTGT+GGG + Chr2:81497148-81497167 None:intergenic 40.0%
!! TACAGATGCTGGTTTGCAAT+TGG + Chr2:81497834-81497853 None:intergenic 40.0%
!! TGTGAAGGCTTTCAAGTTTG+TGG + Chr2:81497149-81497168 None:intergenic 40.0%
!! TTCCTCTGAAGTTGTTGGTT+AGG + Chr2:81500964-81500983 None:intergenic 40.0%
!! TTGGAATTGAGAAGTTGGTG+GGG + Chr2:81497042-81497061 None:intergenic 40.0%
!!! GCAGGCAAATCAGTTTTGAA+TGG + Chr2:81501621-81501640 None:intergenic 40.0%
!!! GCCGACTATAGTTTTTTCCA+CGG + Chr2:81501420-81501439 None:intergenic 40.0%
!!! GTTAGTTTTGCACTAGCATG+AGG + Chr2:81498845-81498864 None:intergenic 40.0%
AACTTGACGAAGAAGTTGCG+CGG - Chr2:81499905-81499924 MsG0280011255.01.T01:intron 45.0%
AATGCTGCATGGAAACCTTG+TGG - Chr2:81500262-81500281 MsG0280011255.01.T01:intron 45.0%
AGAAGAGGAGCCTTAATCCA+TGG + Chr2:81497012-81497031 None:intergenic 45.0%
AGAGTGGAGCAATTGAAGTG+GGG - Chr2:81502638-81502657 MsG0280011255.01.T01:intron 45.0%
AGGCAAAGGTTTCTCGAAAG+CGG + Chr2:81500944-81500963 None:intergenic 45.0%
ATCCACCAATCAATGAAGCG+AGG + Chr2:81498744-81498763 None:intergenic 45.0%
ATGCTGCATGGAAACCTTGT+GGG - Chr2:81500263-81500282 MsG0280011255.01.T01:intron 45.0%
ATTCAACAACGAGTGCAGGA+AGG - Chr2:81501207-81501226 MsG0280011255.01.T01:intron 45.0%
ATTTGGTAGAGGGAGAGAGT+TGG - Chr2:81499867-81499886 MsG0280011255.01.T01:intron 45.0%
CACCAAAGGTGATCTTTACC+GGG - Chr2:81498569-81498588 MsG0280011255.01.T01:intron 45.0%
CAGCTGCTATCTTAAAGCTG+TGG - Chr2:81499323-81499342 MsG0280011255.01.T01:intron 45.0%
CAGCTTCCTTTCTGTTCTGA+AGG + Chr2:81502134-81502153 None:intergenic 45.0%
CCAACGGATCATTGTATGAG+AGG - Chr2:81498688-81498707 MsG0280011255.01.T01:intron 45.0%
CCACCAAAGGTGATCTTTAC+CGG - Chr2:81498568-81498587 MsG0280011255.01.T01:intron 45.0%
CCCTCCACATTGTAACTAAG+TGG + Chr2:81500586-81500605 None:intergenic 45.0%
CCTCTCATACAATGATCCGT+TGG + Chr2:81498691-81498710 None:intergenic 45.0%
CGATGCAGAGACTAATCAGT+CGG - Chr2:81501303-81501322 MsG0280011255.01.T01:intron 45.0%
CGTTGGAATTGAGAAGTTGG+TGG + Chr2:81497044-81497063 None:intergenic 45.0%
CTACATTCAACAACGAGTGC+AGG - Chr2:81501203-81501222 MsG0280011255.01.T01:intron 45.0%
GAAACACAGGGAAGTAGCAA+TGG - Chr2:81501274-81501293 MsG0280011255.01.T01:intron 45.0%
GAAGAACTGCATCAAGAAGG+AGG + Chr2:81498937-81498956 None:intergenic 45.0%
GACTACTACACCCTAAGTCT+AGG + Chr2:81499480-81499499 None:intergenic 45.0%
GAGACTTGCCTTCAGTTCAT+TGG + Chr2:81499416-81499435 None:intergenic 45.0%
GAGTAAGAAGGATGCTCTTG+TGG - Chr2:81498435-81498454 MsG0280011255.01.T01:intron 45.0%
GATGAATTTCCACTGCCACA+AGG - Chr2:81499958-81499977 MsG0280011255.01.T01:intron 45.0%
GCAGATGGCCCAACATATTT+CGG - Chr2:81497665-81497684 MsG0280011255.01.T01:three_prime_UTR 45.0%
GCATTAAATGGGATATGGGC+TGG - Chr2:81498121-81498140 MsG0280011255.01.T01:CDS 45.0%
GCTAGTGCAAAACTAACGGA+TGG - Chr2:81498848-81498867 MsG0280011255.01.T01:intron 45.0%
GGAAACCCTTCAGAACAGAA+AGG - Chr2:81502125-81502144 MsG0280011255.01.T01:intron 45.0%
GGAAGAAACAGAGGACTTCA+AGG - Chr2:81499295-81499314 MsG0280011255.01.T01:intron 45.0%
GGAAGTAAGTCAGCATCTAC+CGG + Chr2:81498779-81498798 None:intergenic 45.0%
GGTCACACAGACAAACATAC+AGG + Chr2:81500416-81500435 None:intergenic 45.0%
TAGGACCTCGCTTCATTGAT+TGG - Chr2:81498736-81498755 MsG0280011255.01.T01:intron 45.0%
TCAAATCCAGGAACCACTTC+TGG + Chr2:81498800-81498819 None:intergenic 45.0%
TCAATGACTGCAACAACAGC+AGG + Chr2:81501639-81501658 None:intergenic 45.0%
TCATACAATGATCCGTTGGC+CGG + Chr2:81498687-81498706 None:intergenic 45.0%
TCCCCACATTAGATGAGTGA+TGG + Chr2:81497801-81497820 None:intergenic 45.0%
TGAGGTGGACAAATCCTAAG+TGG + Chr2:81498827-81498846 None:intergenic 45.0%
TGCCTAACCAACAACTTCAG+AGG - Chr2:81500959-81500978 MsG0280011255.01.T01:CDS 45.0%
TGGAAGGACTACATCAGCAT+TGG - Chr2:81501252-81501271 MsG0280011255.01.T01:intron 45.0%
TGGCCCAACATATTTCGGAT+AGG - Chr2:81497670-81497689 MsG0280011255.01.T01:three_prime_UTR 45.0%
TGTGAATAGACGAAGACTGG+AGG - Chr2:81498400-81498419 MsG0280011255.01.T01:intron 45.0%
TTACTTCCAGAAGTGGTTCC+TGG - Chr2:81498791-81498810 MsG0280011255.01.T01:intron 45.0%
TTCGTTGGACTATCCGCTAT+CGG - Chr2:81498216-81498235 MsG0280011255.01.T01:intron 45.0%
TTTAATCAGGCATGTCCCTC+TGG + Chr2:81500811-81500830 None:intergenic 45.0%
! AATGTGGAGGGTGTAAATCC+GGG - Chr2:81500595-81500614 MsG0280011255.01.T01:intron 45.0%
! AGGAGTTTTCGACGGTGTAT+TGG - Chr2:81501232-81501251 MsG0280011255.01.T01:intron 45.0%
! AGTTTTGCACTAGCATGAGG+TGG + Chr2:81498842-81498861 None:intergenic 45.0%
! CAATGTGGAGGGTGTAAATC+CGG - Chr2:81500594-81500613 MsG0280011255.01.T01:intron 45.0%
! CATAAGGAGCATGACCAAAG+TGG + Chr2:81498243-81498262 None:intergenic 45.0%
! GTTTTCGACGGTGTATTGGA+AGG - Chr2:81501236-81501255 MsG0280011255.01.T01:intron 45.0%
! TGGCATTTTCTGCTGCTGTT+TGG - Chr2:81502499-81502518 MsG0280011255.01.T01:intron 45.0%
!! AATTGAGAAGTTGGTGGGGT+TGG + Chr2:81497038-81497057 None:intergenic 45.0%
!! CACTTTTTGGAGAGAGAGAG+CGG - Chr2:81501340-81501359 MsG0280011255.01.T01:intron 45.0%
!! CCGGTTGGTAGTTCATATCA+TGG + Chr2:81498668-81498687 None:intergenic 45.0%
!! CCTTAATCCATGGAGGTGTT+GGG + Chr2:81497002-81497021 None:intergenic 45.0%
!! CTTAATCCATGGAGGTGTTG+GGG + Chr2:81497001-81497020 None:intergenic 45.0%
!! TGCTGACTTACTTCCAGAAG+TGG - Chr2:81498784-81498803 MsG0280011255.01.T01:intron 45.0%
!!! ATAAGTAAATTTTTTTTATA+GGG - Chr2:81503310-81503329 MsG0280011255.01.T01:CDS 5.0%
!!! TATAAGTAAATTTTTTTTAT+AGG - Chr2:81503309-81503328 MsG0280011255.01.T01:CDS 5.0%
AAGTCAGCATCTACCGGAAG+CGG + Chr2:81498773-81498792 None:intergenic 50.0%
ACCTTCTCATCTCTCTCCCA+TGG + Chr2:81497270-81497289 None:intergenic 50.0%
AGAGGAGCCTTAATCCATGG+AGG + Chr2:81497009-81497028 None:intergenic 50.0%
AGCCCGGTAAAGATCACCTT+TGG + Chr2:81498574-81498593 None:intergenic 50.0%
AGGGGAAAGCTGATAGCAGA+TGG - Chr2:81497650-81497669 MsG0280011255.01.T01:three_prime_UTR 50.0%
ATAGACGAAGACTGGAGGCT+TGG - Chr2:81498405-81498424 MsG0280011255.01.T01:intron 50.0%
ATGAACTACCAACCGGCCAA+CGG - Chr2:81498672-81498691 MsG0280011255.01.T01:intron 50.0%
CAAGTCTACATCCTCCCACA+AGG + Chr2:81500280-81500299 None:intergenic 50.0%
CCACTTGTACTAGTGCCTTG+TGG + Chr2:81499976-81499995 None:intergenic 50.0%
CCGCAACAATAGAACACCTC+CGG + Chr2:81499790-81499809 None:intergenic 50.0%
CCGGTAAAGATCACCTTTGG+TGG + Chr2:81498571-81498590 None:intergenic 50.0%
CTAAGTGGTGGCTCAAATCC+AGG + Chr2:81498812-81498831 None:intergenic 50.0%
CTGGATTTGAGCCACCACTT+AGG - Chr2:81498810-81498829 MsG0280011255.01.T01:intron 50.0%
CTTGTGGGAGGATGTAGACT+TGG - Chr2:81500278-81500297 MsG0280011255.01.T01:intron 50.0%
GAGGACTAATGAGCTTGCCA+TGG - Chr2:81497458-81497477 MsG0280011255.01.T01:intron 50.0%
GCTTCAAAGGTTGAGGAGTG+AGG - Chr2:81497356-81497375 MsG0280011255.01.T01:intron 50.0%
GGAGTGAGGCTGCAATAATG+AGG - Chr2:81497370-81497389 MsG0280011255.01.T01:intron 50.0%
GGTGGACAAATCCTAAGTGG+TGG + Chr2:81498824-81498843 None:intergenic 50.0%
GTGGGGTTTCACTTTCAGAG+TGG - Chr2:81502655-81502674 MsG0280011255.01.T01:intron 50.0%
TAGCTCACTTGTCCTTCGGT+CGG + Chr2:81498601-81498620 None:intergenic 50.0%
TCAAATCCCCAACACCTCCA+TGG - Chr2:81496992-81497011 MsG0280011255.01.T01:intron 50.0%
TCCAAAATAGCTGCCGTCCT+AGG - Chr2:81501778-81501797 MsG0280011255.01.T01:intron 50.0%
TCGGTAGCTCACTTGTCCTT+CGG + Chr2:81498605-81498624 None:intergenic 50.0%
TCGTTGGACTATCCGCTATC+GGG - Chr2:81498217-81498236 MsG0280011255.01.T01:intron 50.0%
! ACCTAGGACGGCAGCTATTT+TGG + Chr2:81501782-81501801 None:intergenic 50.0%
! AGACTGGAGGCTTGGTTGTA+TGG - Chr2:81498413-81498432 MsG0280011255.01.T01:intron 50.0%
! CCACAAGGCACTAGTACAAG+TGG - Chr2:81499973-81499992 MsG0280011255.01.T01:intron 50.0%
! CCCAACACCTCCATGGATTA+AGG - Chr2:81496999-81497018 MsG0280011255.01.T01:intron 50.0%
! CCTGCGCAGTGCTTTTCTTT+TGG + Chr2:81501472-81501491 None:intergenic 50.0%
! CTCTTGAAGCCCACGTTTTC+TGG + Chr2:81502058-81502077 None:intergenic 50.0%
! GACCTCGCTTCATTGATTGG+TGG - Chr2:81498739-81498758 MsG0280011255.01.T01:intron 50.0%
! GCCTTAATCCATGGAGGTGT+TGG + Chr2:81497003-81497022 None:intergenic 50.0%
!! CAAGAAGGAGGGTACTACCA+AGG + Chr2:81498925-81498944 None:intergenic 50.0%
!! CCAAAAGAAAAGCACTGCGC+AGG - Chr2:81501469-81501488 MsG0280011255.01.T01:intron 50.0%
!! CCGGAGGTGTTCTATTGTTG+CGG - Chr2:81499787-81499806 MsG0280011255.01.T01:intron 50.0%
!! TTTTTGGAGAGAGAGAGCGG+AGG - Chr2:81501343-81501362 MsG0280011255.01.T01:intron 50.0%
!!! GCCGTCCTAGGTTTTTTCAC+AGG - Chr2:81501790-81501809 MsG0280011255.01.T01:intron 50.0%
ACAATACAGCGTCTCACCGG+AGG - Chr2:81499771-81499790 MsG0280011255.01.T01:intron 55.0%
ACAATGATCCGTTGGCCGGT+TGG + Chr2:81498683-81498702 None:intergenic 55.0%
CTGCATGGAAACCTTGTGGG+AGG - Chr2:81500266-81500285 MsG0280011255.01.T01:intron 55.0%
GCCATGGGAGAGAGATGAGA+AGG - Chr2:81497266-81497285 MsG0280011255.01.T01:intron 55.0%
GTACTAGTGCCTTGTGGCAG+TGG + Chr2:81499970-81499989 None:intergenic 55.0%
GTTTCTCGAAAGCGGCACTG+CGG + Chr2:81500936-81500955 None:intergenic 55.0%
TATCCGCTATCGGGCCACTT+TGG - Chr2:81498226-81498245 MsG0280011255.01.T01:intron 55.0%
TGACCAAAGTGGCCCGATAG+CGG + Chr2:81498232-81498251 None:intergenic 55.0%
TGGTGGGGTTGGAGAAGAAG+AGG + Chr2:81497027-81497046 None:intergenic 55.0%
TTTCTCGAAAGCGGCACTGC+GGG + Chr2:81500935-81500954 None:intergenic 55.0%
! CATAGACTGCGCCGCTCTTT+TGG - Chr2:81499677-81499696 MsG0280011255.01.T01:intron 55.0%
! GGAAGGCGAGGAGTTTTCGA+CGG - Chr2:81501224-81501243 MsG0280011255.01.T01:intron 55.0%
ACAACGAGTGCAGGAAGGCG+AGG - Chr2:81501212-81501231 MsG0280011255.01.T01:intron 60.0%
GGACAAGTGAGCTACCGAGC+TGG - Chr2:81498607-81498626 MsG0280011255.01.T01:intron 60.0%
GGGGTGAAGTTGGCCACCAA+AGG - Chr2:81498555-81498574 MsG0280011255.01.T01:intron 60.0%
GGTGGATGCACAACCGCTTC+CGG - Chr2:81498757-81498776 MsG0280011255.01.T01:intron 60.0%
TCCTTCGGTCGGATTCAGCC+CGG + Chr2:81498590-81498609 None:intergenic 60.0%
ACCGGGCTGAATCCGACCGA+AGG - Chr2:81498586-81498605 MsG0280011255.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 81496850 81503481 81496850 ID=MsG0280011255.01;Name=MsG0280011255.01
Chr2 mRNA 81496850 81503481 81496850 ID=MsG0280011255.01.T01;Parent=MsG0280011255.01;Name=MsG0280011255.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0.4|0.5|1|0.2|0.16|6|497|341
Chr2 exon 81496850 81496913 81496850 ID=MsG0280011255.01.T01:exon:12174;Parent=MsG0280011255.01.T01
Chr2 exon 81497464 81497842 81497464 ID=MsG0280011255.01.T01:exon:12173;Parent=MsG0280011255.01.T01
Chr2 exon 81498034 81498205 81498034 ID=MsG0280011255.01.T01:exon:12172;Parent=MsG0280011255.01.T01
Chr2 exon 81500843 81501035 81500843 ID=MsG0280011255.01.T01:exon:12171;Parent=MsG0280011255.01.T01
Chr2 exon 81501838 81501922 81501838 ID=MsG0280011255.01.T01:exon:12170;Parent=MsG0280011255.01.T01
Chr2 exon 81502852 81503481 81502852 ID=MsG0280011255.01.T01:exon:12169;Parent=MsG0280011255.01.T01
Chr2 CDS 81502852 81503481 81502852 ID=MsG0280011255.01.T01:cds;Parent=MsG0280011255.01.T01
Chr2 CDS 81501838 81501922 81501838 ID=MsG0280011255.01.T01:cds;Parent=MsG0280011255.01.T01
Chr2 CDS 81500843 81501035 81500843 ID=MsG0280011255.01.T01:cds;Parent=MsG0280011255.01.T01
Chr2 CDS 81498088 81498205 81498088 ID=MsG0280011255.01.T01:cds;Parent=MsG0280011255.01.T01
Chr2 three_prime_UTR 81498034 81498087 81498034 ID=MsG0280011255.01.T01:three_prime_utr;Parent=MsG0280011255.01.T01
Chr2 three_prime_UTR 81497464 81497842 81497464 ID=MsG0280011255.01.T01:three_prime_utr;Parent=MsG0280011255.01.T01
Chr2 three_prime_UTR 81496850 81496913 81496850 ID=MsG0280011255.01.T01:three_prime_utr;Parent=MsG0280011255.01.T01
Gene Sequence

>MsG0280011255.01.T01

ATGCTCTTCCTTAACTATTCATGTTCTGTCATTCACATTTCTTCTTCTTCTTCTTCAAACAACAACAATAACAACCTTAATCACAACAAACCTAATTCCCTTTCAATTCCTAACAACGATGATGATAATGTTTCTATCAAATTCAAATCCCCAACACCTCCATGGATTAAGGCTCCTCTTCTTCTCCAACCCCACCAACTTCTCAATTCCAACGTTGAACCAAAACAATGTGACCATTCTGATAAAGCTTTAACCGGTAAAGAACTCAGAGGCAAAAAAGCCTTAAAGAAAATAGCCCACAAACTTGAAAGCCTTCACAAGACTCAAACTCAAATGGGTTCTCAAAAAGTTGAAAACTTTGGGTCTAGTTTGGAAAATTTGATGGAGAATGAGAAGGTTGTGAGAAAAGAAAGAATGCCATGGGAGAGAGATGAGAAGGTTAATTTTTTGAAGGTGAAAAAGGAAAAAATTGTCACTGCTGCGGATTTGACTCTTGATAAGATGTTGCTTCAAAGGTTGAGGAGTGAGGCTGCAATAATGAGGATTTGGGTCAAGGTTAAGAAAGCTGTGTTACACCAAGATGTTGTGAATCAAATTAAAAGGACTTGGAGGACTAATGAGCTTGCCATGACGAAGACTGGAGGCTTGGTTGTATGGAGTAAGAAGGATGCTCTTGTGGTTTATAGAGGATGCACCTATAAGTTGACCTCTAAAGGAAGAAACAGAGGACTTCAAGGCTTAGCAGCTGCTATCTTAAAGCTGTGGCACAAGAGTCATATAGCAAAAATTGCAATCAAGTATGGAGTTCAAAATACTGACAATGAAACAATGGCCAATGAACTGAAGGCAAGTCTCATTGAAAATTTACTTTTCATTGTGGGTGAGGTGCAAGATATCCTAGACTTAGGGAAACCCTTCAGAACAGAAAGGAAGCTGAGACCAGACAATATGAAAATTAATGCATGCATGTCTAAGAAGTCTATCAAGCAGCAATTGCTCTTCAATTGTTTACTCATCCATGTTTGA

Protein sequence

>MsG0280011255.01.T01

MLFLNYSCSVIHISSSSSSNNNNNNLNHNKPNSLSIPNNDDDNVSIKFKSPTPPWIKAPLLLQPHQLLNSNVEPKQCDHSDKALTGKELRGKKALKKIAHKLESLHKTQTQMGSQKVENFGSSLENLMENEKVVRKERMPWERDEKVNFLKVKKEKIVTAADLTLDKMLLQRLRSEAAIMRIWVKVKKAVLHQDVVNQIKRTWRTNELAMTKTGGLVVWSKKDALVVYRGCTYKLTSKGRNRGLQGLAAAILKLWHKSHIAKIAIKYGVQNTDNETMANELKASLIENLLFIVGEVQDILDLGKPFRTERKLRPDNMKINACMSKKSIKQQLLFNCLLIHV*