AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021248.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021248.01.T02 MTR_4g070060 96.921 617 14 1 1 612 1 617 0.0 1229
MsG0480021248.01.T02 MTR_5g068860 27.606 355 244 5 235 582 136 484 5.03e-34 136
MsG0480021248.01.T02 MTR_1g115415 25.141 354 250 5 235 580 104 450 6.34e-32 130
MsG0480021248.01.T02 MTR_4g084630 26.452 310 193 6 275 581 42 319 3.06e-30 122
MsG0480021248.01.T02 MTR_6g003960 27.187 320 226 4 266 580 270 587 8.91e-30 124
MsG0480021248.01.T02 MTR_2g067230 28.794 257 166 6 347 597 71 316 1.83e-23 102
MsG0480021248.01.T02 MTR_2g034600 23.944 284 204 7 313 590 215 492 5.24e-22 100
MsG0480021248.01.T02 MTR_2g034600 22.846 267 164 7 271 535 244 470 2.85e-14 76.3
MsG0480021248.01.T02 MTR_2g034600 23.944 284 204 7 313 590 276 553 6.90e-22 100
MsG0480021248.01.T02 MTR_2g034600 22.846 267 164 7 271 535 305 531 3.13e-14 76.3
MsG0480021248.01.T02 MTR_2g034600 23.944 284 204 7 313 590 280 557 8.45e-22 100
MsG0480021248.01.T02 MTR_2g034600 22.846 267 164 7 271 535 309 535 3.24e-14 76.3
MsG0480021248.01.T02 MTR_2g049780 28.017 232 156 5 361 585 82 309 4.95e-19 89.0
MsG0480021248.01.T02 MTR_5g094610 23.746 299 181 6 274 561 187 449 2.99e-18 88.6
MsG0480021248.01.T02 MTR_5g094610 24.164 269 195 5 198 457 182 450 8.61e-13 71.2
MsG0480021248.01.T02 MTR_5g041630 28.261 230 152 5 357 577 64 289 7.91e-16 79.0
MsG0480021248.01.T02 MTR_7g081270 26.699 206 139 5 384 580 77 279 1.78e-14 74.7
MsG0480021248.01.T02 MTR_8g105560 21.774 248 184 3 298 538 111 355 2.86e-14 76.3
MsG0480021248.01.T01 MTR_4g070060 96.921 617 14 1 1 612 1 617 0.0 1229
MsG0480021248.01.T01 MTR_5g068860 27.606 355 244 5 235 582 136 484 5.03e-34 136
MsG0480021248.01.T01 MTR_1g115415 25.141 354 250 5 235 580 104 450 6.34e-32 130
MsG0480021248.01.T01 MTR_4g084630 26.452 310 193 6 275 581 42 319 3.06e-30 122
MsG0480021248.01.T01 MTR_6g003960 27.187 320 226 4 266 580 270 587 8.91e-30 124
MsG0480021248.01.T01 MTR_2g067230 28.794 257 166 6 347 597 71 316 1.83e-23 102
MsG0480021248.01.T01 MTR_2g034600 23.944 284 204 7 313 590 215 492 5.24e-22 100
MsG0480021248.01.T01 MTR_2g034600 22.846 267 164 7 271 535 244 470 2.85e-14 76.3
MsG0480021248.01.T01 MTR_2g034600 23.944 284 204 7 313 590 276 553 6.90e-22 100
MsG0480021248.01.T01 MTR_2g034600 22.846 267 164 7 271 535 305 531 3.13e-14 76.3
MsG0480021248.01.T01 MTR_2g034600 23.944 284 204 7 313 590 280 557 8.45e-22 100
MsG0480021248.01.T01 MTR_2g034600 22.846 267 164 7 271 535 309 535 3.24e-14 76.3
MsG0480021248.01.T01 MTR_2g049780 28.017 232 156 5 361 585 82 309 4.95e-19 89.0
MsG0480021248.01.T01 MTR_5g094610 23.746 299 181 6 274 561 187 449 2.99e-18 88.6
MsG0480021248.01.T01 MTR_5g094610 24.164 269 195 5 198 457 182 450 8.61e-13 71.2
MsG0480021248.01.T01 MTR_5g041630 28.261 230 152 5 357 577 64 289 7.91e-16 79.0
MsG0480021248.01.T01 MTR_7g081270 26.699 206 139 5 384 580 77 279 1.78e-14 74.7
MsG0480021248.01.T01 MTR_8g105560 21.774 248 184 3 298 538 111 355 2.86e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021248.01.T02 AT2G21710 59.696 593 219 4 32 604 24 616 0.0 741
MsG0480021248.01.T02 AT2G21710 60.413 533 191 4 32 544 24 556 0.0 667
MsG0480021248.01.T02 AT2G21710 60.526 532 190 4 32 543 24 555 0.0 666
MsG0480021248.01.T02 AT4G38160 27.052 329 205 6 257 581 24 321 3.08e-34 133
MsG0480021248.01.T02 AT4G38160 27.052 329 205 6 257 581 24 321 3.08e-34 133
MsG0480021248.01.T02 AT4G38160 27.052 329 205 6 257 581 24 321 6.53e-34 133
MsG0480021248.01.T02 AT4G38160 27.052 329 205 6 257 581 24 321 7.50e-34 133
MsG0480021248.01.T02 AT1G78930 29.692 357 232 8 234 580 227 574 2.80e-32 132
MsG0480021248.01.T02 AT4G02990 27.557 352 242 5 238 582 147 492 2.86e-32 131
MsG0480021248.01.T02 AT4G02990 27.557 352 242 5 238 582 147 492 2.86e-32 131
MsG0480021248.01.T02 AT2G44020 24.474 380 262 6 235 606 109 471 1.20e-31 129
MsG0480021248.01.T02 AT2G34620 27.200 250 168 6 344 586 54 296 8.21e-20 90.9
MsG0480021248.01.T02 AT4G14605 24.303 251 179 6 336 580 222 467 1.29e-19 92.8
MsG0480021248.01.T02 AT4G14605 25.843 178 128 2 274 450 268 442 2.09e-12 70.1
MsG0480021248.01.T02 AT4G14605 24.303 251 179 6 336 580 222 467 1.29e-19 92.8
MsG0480021248.01.T02 AT4G14605 25.843 178 128 2 274 450 268 442 2.09e-12 70.1
MsG0480021248.01.T02 AT5G55580 24.232 293 179 5 277 562 81 337 1.35e-19 91.7
MsG0480021248.01.T02 AT5G55580 24.731 279 201 5 198 467 69 347 2.44e-12 69.3
MsG0480021248.01.T02 AT5G55580 24.232 293 179 5 277 562 187 443 2.23e-19 92.0
MsG0480021248.01.T02 AT5G55580 25.448 279 199 4 198 467 175 453 1.36e-12 70.9
MsG0480021248.01.T02 AT2G36000 28.400 250 154 9 348 585 76 312 2.03e-17 84.3
MsG0480021248.01.T02 AT2G36000 28.400 250 154 9 348 585 76 312 2.49e-17 84.0
MsG0480021248.01.T02 AT5G54180 23.457 324 201 10 269 587 214 495 2.40e-16 82.8
MsG0480021248.01.T02 AT2G03050 28.061 196 105 2 423 582 75 270 1.20e-15 78.2
MsG0480021248.01.T02 AT2G03050 28.061 196 105 2 423 582 76 271 1.31e-15 78.2
MsG0480021248.01.T02 AT3G18870 25.490 204 140 5 385 580 69 268 7.30e-14 72.8
MsG0480021248.01.T02 AT5G55580 23.267 202 147 3 277 471 187 387 1.40e-12 70.5
MsG0480021248.01.T02 AT5G55580 29.167 192 118 8 349 528 188 373 5.62e-12 68.6
MsG0480021248.01.T02 AT3G46950 24.110 365 229 10 275 599 85 441 1.67e-12 70.5
MsG0480021248.01.T01 AT2G21710 59.696 593 219 4 32 604 24 616 0.0 741
MsG0480021248.01.T01 AT2G21710 60.413 533 191 4 32 544 24 556 0.0 667
MsG0480021248.01.T01 AT2G21710 60.526 532 190 4 32 543 24 555 0.0 666
MsG0480021248.01.T01 AT4G38160 27.052 329 205 6 257 581 24 321 3.08e-34 133
MsG0480021248.01.T01 AT4G38160 27.052 329 205 6 257 581 24 321 3.08e-34 133
MsG0480021248.01.T01 AT4G38160 27.052 329 205 6 257 581 24 321 6.53e-34 133
MsG0480021248.01.T01 AT4G38160 27.052 329 205 6 257 581 24 321 7.50e-34 133
MsG0480021248.01.T01 AT1G78930 29.692 357 232 8 234 580 227 574 2.80e-32 132
MsG0480021248.01.T01 AT4G02990 27.557 352 242 5 238 582 147 492 2.86e-32 131
MsG0480021248.01.T01 AT4G02990 27.557 352 242 5 238 582 147 492 2.86e-32 131
MsG0480021248.01.T01 AT2G44020 24.474 380 262 6 235 606 109 471 1.20e-31 129
MsG0480021248.01.T01 AT2G34620 27.200 250 168 6 344 586 54 296 8.21e-20 90.9
MsG0480021248.01.T01 AT4G14605 24.303 251 179 6 336 580 222 467 1.29e-19 92.8
MsG0480021248.01.T01 AT4G14605 25.843 178 128 2 274 450 268 442 2.09e-12 70.1
MsG0480021248.01.T01 AT4G14605 24.303 251 179 6 336 580 222 467 1.29e-19 92.8
MsG0480021248.01.T01 AT4G14605 25.843 178 128 2 274 450 268 442 2.09e-12 70.1
MsG0480021248.01.T01 AT5G55580 24.232 293 179 5 277 562 81 337 1.35e-19 91.7
MsG0480021248.01.T01 AT5G55580 24.731 279 201 5 198 467 69 347 2.44e-12 69.3
MsG0480021248.01.T01 AT5G55580 24.232 293 179 5 277 562 187 443 2.23e-19 92.0
MsG0480021248.01.T01 AT5G55580 25.448 279 199 4 198 467 175 453 1.36e-12 70.9
MsG0480021248.01.T01 AT2G36000 28.400 250 154 9 348 585 76 312 2.03e-17 84.3
MsG0480021248.01.T01 AT2G36000 28.400 250 154 9 348 585 76 312 2.49e-17 84.0
MsG0480021248.01.T01 AT5G54180 23.457 324 201 10 269 587 214 495 2.40e-16 82.8
MsG0480021248.01.T01 AT2G03050 28.061 196 105 2 423 582 75 270 1.20e-15 78.2
MsG0480021248.01.T01 AT2G03050 28.061 196 105 2 423 582 76 271 1.31e-15 78.2
MsG0480021248.01.T01 AT3G18870 25.490 204 140 5 385 580 69 268 7.30e-14 72.8
MsG0480021248.01.T01 AT5G55580 23.267 202 147 3 277 471 187 387 1.40e-12 70.5
MsG0480021248.01.T01 AT5G55580 29.167 192 118 8 349 528 188 373 5.62e-12 68.6
MsG0480021248.01.T01 AT3G46950 24.110 365 229 10 275 599 85 441 1.67e-12 70.5

Find 50 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACAGTAGATTGAAGTTTA+TGG 0.164656 4:+55794491 None:intergenic
GCACTGTCTAAGATGGTTTA+AGG 0.204913 4:-55794069 MsG0480021248.01.T01:intron
TCCAACAAGCCCTTAATAAA+AGG 0.217205 4:+55793960 None:intergenic
CAATCACTTGTGAGAGCTTA+TGG 0.267092 4:-55793923 MsG0480021248.01.T01:intron
AATTTGAGCGTTGATCTTTC+AGG 0.275922 4:+55793557 None:intergenic
TTACGTCTGGGCTGTAGATT+GGG 0.307230 4:+55794447 None:intergenic
TTTACGTCTGGGCTGTAGAT+TGG 0.307874 4:+55794446 None:intergenic
TTATTAAGGGCTTGTTGGAT+TGG 0.365068 4:-55793956 MsG0480021248.01.T01:intron
CATAAGCTCTCACAAGTGAT+TGG 0.381053 4:+55793924 None:intergenic
TCTTACTGTATTAACTTCAT+TGG 0.384451 4:-55794354 MsG0480021248.01.T01:three_prime_UTR
CAGAAACTCAGTTGAGGAAA+AGG 0.390472 4:-55794247 MsG0480021248.01.T01:three_prime_UTR
GTCTCCGCAATTCTATTCAT+TGG 0.394501 4:+55794110 None:intergenic
TATTCCAAGACACAAGGTTC+TGG 0.399312 4:-55794605 MsG0480021248.01.T01:CDS
CCAACAAGCCCTTAATAAAA+GGG 0.414215 4:+55793961 None:intergenic
TGGAAAGTGGAAACAACTTA+TGG 0.416837 4:-55793903 MsG0480021248.01.T01:intron
TCCACCAGAACCTTGTGTCT+TGG 0.429802 4:+55794601 None:intergenic
ACTTGCAATTTATCATCCGC+TGG 0.450052 4:-55794194 MsG0480021248.01.T01:three_prime_UTR
TTACCTTGAGCCGTCTATCC+CGG 0.471958 4:-55793607 MsG0480021248.01.T01:three_prime_UTR
ACTTCTTGCACTGTCTAAGA+TGG 0.480138 4:-55794076 MsG0480021248.01.T01:three_prime_UTR
CAATTGCTAAAGAGTGTGCT+TGG 0.499143 4:-55794155 MsG0480021248.01.T01:three_prime_UTR
ATAAGCTCTCACAAGTGATT+GGG 0.501238 4:+55793925 None:intergenic
TGAATCTGCTGATACTCAGC+CGG 0.506642 4:+55793588 None:intergenic
GTGCAAGAAGTACACGGGTC+AGG 0.513217 4:+55794088 None:intergenic
TTGTGAGAGCTTATGGAAAG+TGG 0.513431 4:-55793916 MsG0480021248.01.T01:intron
TCAATCTACTGTCATGAAAG+AGG 0.513691 4:-55794482 MsG0480021248.01.T01:CDS
GAATCTGCTGATACTCAGCC+GGG 0.517649 4:+55793589 None:intergenic
CGTTAACAGCGATGATATGT+CGG 0.537424 4:+55793633 None:intergenic
GAGTCATTTAACACCCGCCT+TGG 0.552566 4:+55794292 None:intergenic
TCCAAGACACAAGGTTCTGG+TGG 0.555314 4:-55794602 MsG0480021248.01.T01:CDS
CTTGCAATTTATCATCCGCT+GGG 0.560833 4:-55794193 MsG0480021248.01.T01:three_prime_UTR
ATCATAACTGTTCTTCTCCA+AGG 0.561726 4:-55794309 MsG0480021248.01.T01:three_prime_UTR
TGTTGCACTAATTTCTATCG+TGG 0.564101 4:-55794002 MsG0480021248.01.T01:intron
TACGTCTGGGCTGTAGATTG+GGG 0.575774 4:+55794448 None:intergenic
TAACTGTTCTTCTCCAAGGC+GGG 0.582270 4:-55794305 MsG0480021248.01.T01:three_prime_UTR
TGGAATAATTCGACCCTCGA+GGG 0.595008 4:+55794621 None:intergenic
CAGCCGGGATAGACGGCTCA+AGG 0.602682 4:+55793604 None:intergenic
TAGACAGTGCAAGAAGTACA+CGG 0.614958 4:+55794082 None:intergenic
TGATACTCAGCCGGGATAGA+CGG 0.615627 4:+55793597 None:intergenic
CAACAAGCCCTTAATAAAAG+GGG 0.630433 4:+55793962 None:intergenic
TCGAATTATTCCAAGACACA+AGG 0.638216 4:-55794611 MsG0480021248.01.T01:CDS
TTGGAATAATTCGACCCTCG+AGG 0.648302 4:+55794620 None:intergenic
GTGCAGCAGAAACTCAGTTG+AGG 0.649477 4:-55794253 MsG0480021248.01.T01:three_prime_UTR
TGTGCCAATGAATAGAATTG+CGG 0.666692 4:-55794114 MsG0480021248.01.T01:three_prime_UTR
AGATGAAGAATTTAACAACA+TGG 0.681193 4:-55794536 MsG0480021248.01.T01:CDS
AATACAGTAAGATTAATATG+CGG 0.681460 4:+55794365 None:intergenic
AGACAGTGCAAGAAGTACAC+GGG 0.687306 4:+55794083 None:intergenic
ATAACTGTTCTTCTCCAAGG+CGG 0.694901 4:-55794306 MsG0480021248.01.T01:three_prime_UTR
TATCTTCACAAGTGACCCAG+CGG 0.704700 4:+55794178 None:intergenic
TTCATTGGCACATTCCACAG+TGG 0.731153 4:+55794125 None:intergenic
TGCTTGGAAACATGCCACTG+TGG 0.736217 4:-55794139 MsG0480021248.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTTACATACCTT+TGG + Chr4:55795647-55795666 None:intergenic 15.0%
!! TTCATAAATAAAATTTCCAA+TGG - Chr4:55795752-55795771 MsG0480021248.01.T01:intron 15.0%
!!! AAATTCGACTTTTAATTTAA+GGG - Chr4:55794133-55794152 MsG0480021248.01.T01:three_prime_UTR 15.0%
!!! AAGTTTCATTTTTGTTTAAT+AGG + Chr4:55796915-55796934 None:intergenic 15.0%
!!! AATTTTTGACAAACTTTATA+GGG - Chr4:55795314-55795333 MsG0480021248.01.T01:intron 15.0%
!!! TAATTTTTGACAAACTTTAT+AGG - Chr4:55795313-55795332 MsG0480021248.01.T01:intron 15.0%
!!! TTTTAAAAATTGTGTATCTA+TGG + Chr4:55796397-55796416 None:intergenic 15.0%
!! AATACAGTAAGATTAATATG+CGG + Chr4:55796763-55796782 None:intergenic 20.0%
!! AATTACTTATACTGGTAATT+TGG - Chr4:55794037-55794056 MsG0480021248.01.T01:intron 20.0%
!! TCAAAAATTAATGTACCTTT+CGG + Chr4:55795303-55795322 None:intergenic 20.0%
!! TTAAGTATCTGTACTATTAT+GGG - Chr4:55795543-55795562 MsG0480021248.01.T01:CDS 20.0%
!! TTGATTACTTGAAAGAATTT+GGG - Chr4:55795435-55795454 MsG0480021248.01.T01:intron 20.0%
!!! AAATTTGGAATTACTTATAC+TGG - Chr4:55794029-55794048 MsG0480021248.01.T01:intron 20.0%
!!! ATTTAAAGTTGAATATGCAA+TGG + Chr4:55796446-55796465 None:intergenic 20.0%
!!! CAAATTCGACTTTTAATTTA+AGG - Chr4:55794132-55794151 MsG0480021248.01.T01:three_prime_UTR 20.0%
!!! GTTGATTATTTAGAGTTTAA+TGG - Chr4:55795094-55795113 MsG0480021248.01.T01:intron 20.0%
!!! TGTTACATATTTTATCATGA+AGG - Chr4:55795814-55795833 MsG0480021248.01.T01:intron 20.0%
! AAAGTCGAATTTGAATATTC+CGG + Chr4:55794125-55794144 None:intergenic 25.0%
! AATGCTTACAATTAAACCAA+TGG - Chr4:55795589-55795608 MsG0480021248.01.T01:CDS 25.0%
! AGAATTATTTGAATGTAACC+AGG - Chr4:55794307-55794326 MsG0480021248.01.T01:three_prime_UTR 25.0%
! AGATGAAGAATTTAACAACA+TGG - Chr4:55796589-55796608 MsG0480021248.01.T01:intron 25.0%
! ATGCAACAATTGTAAATTTC+AGG - Chr4:55795412-55795431 MsG0480021248.01.T01:intron 25.0%
! CAAAATATGCACTGAAAATT+TGG + Chr4:55794560-55794579 None:intergenic 25.0%
! GCTTCAGAAAAATTACTTAA+TGG + Chr4:55795983-55796002 None:intergenic 25.0%
! GTTAAGTATCTGTACTATTA+TGG - Chr4:55795542-55795561 MsG0480021248.01.T01:CDS 25.0%
! GTTGATTACTTGAAAGAATT+TGG - Chr4:55795434-55795453 MsG0480021248.01.T01:intron 25.0%
! TCTAAATATCATTGATACCT+GGG + Chr4:55796374-55796393 None:intergenic 25.0%
! TCTTACTGTATTAACTTCAT+TGG - Chr4:55796771-55796790 MsG0480021248.01.T01:intron 25.0%
! TTATGAATTGAGATTAGTGT+TGG - Chr4:55794208-55794227 MsG0480021248.01.T01:three_prime_UTR 25.0%
! TTTAGGAAAATCAAAAACCA+TGG + Chr4:55795248-55795267 None:intergenic 25.0%
!! AATGGTAACAAATTTTGTAG+CGG + Chr4:55795965-55795984 None:intergenic 25.0%
!! ATTGTCAGTATTTTATCATC+AGG + Chr4:55795792-55795811 None:intergenic 25.0%
!! GTAAAGTATTATTTGTCTCT+CGG - Chr4:55796212-55796231 MsG0480021248.01.T01:CDS 25.0%
!!! AGTTTAATTTTTTCTTCGTG+AGG + Chr4:55793798-55793817 None:intergenic 25.0%
!!! ATTTTTGTTTAATAGGACAG+AGG + Chr4:55796908-55796927 None:intergenic 25.0%
AAAGAAAAAAGACATACCAC+AGG + Chr4:55795941-55795960 None:intergenic 30.0%
AAGCTGTAAGATAACAACTT+CGG + Chr4:55795160-55795179 None:intergenic 30.0%
AATCAGAGTGATAAACTTTG+TGG + Chr4:55796013-55796032 None:intergenic 30.0%
ACATCTTTGATTAGAGTTGT+CGG - Chr4:55794354-55794373 MsG0480021248.01.T01:three_prime_UTR 30.0%
ATACTGGTAATTTGGTTGAT+AGG - Chr4:55794045-55794064 MsG0480021248.01.T01:intron 30.0%
ATAGCCTTTACAAGAAGATT+AGG - Chr4:55795915-55795934 MsG0480021248.01.T01:CDS 30.0%
CAAATGGATAAGAGAGTTTA+TGG + Chr4:55793515-55793534 None:intergenic 30.0%
CACTGAAGAAAATATTCCAA+AGG - Chr4:55796130-55796149 MsG0480021248.01.T01:CDS 30.0%
CATTTCTTCAATTCTCTAGA+TGG - Chr4:55794879-55794898 MsG0480021248.01.T01:CDS 30.0%
GTCTAAATATCATTGATACC+TGG + Chr4:55796375-55796394 None:intergenic 30.0%
TAACCATAATACCTGATAAG+TGG + Chr4:55794191-55794210 None:intergenic 30.0%
TAGTACAGATACTTAACAAG+AGG + Chr4:55795539-55795558 None:intergenic 30.0%
TGACAGTAGATTGAAGTTTA+TGG + Chr4:55796637-55796656 None:intergenic 30.0%
TGCTAATTTGAAAAGATTGC+CGG - Chr4:55794103-55794122 MsG0480021248.01.T01:three_prime_UTR 30.0%
TTATAAACTGTCTGATCAAG+AGG - Chr4:55796037-55796056 MsG0480021248.01.T01:CDS 30.0%
TTGCGCAAATAAGTATACTT+AGG + Chr4:55796314-55796333 None:intergenic 30.0%
! ATTTAGAGTTTAATGGAGTC+AGG - Chr4:55795101-55795120 MsG0480021248.01.T01:intron 30.0%
!! AGGTTTTTAAAGAAGCAATG+CGG - Chr4:55794000-55794019 MsG0480021248.01.T01:intron 30.0%
!! CAAAGTACCCCTTTTATTAA+GGG - Chr4:55797156-55797175 MsG0480021248.01.T01:CDS 30.0%
!! TCAAAGTACCCCTTTTATTA+AGG - Chr4:55797155-55797174 MsG0480021248.01.T01:CDS 30.0%
!! TGAGTTTGCTTGTTGTATAT+AGG - Chr4:55796079-55796098 MsG0480021248.01.T01:CDS 30.0%
!! TTGATTTGCGTATTGTTGTT+AGG - Chr4:55794827-55794846 MsG0480021248.01.T01:CDS 30.0%
!! TTTGATTTTCCTAAAGCTCT+CGG - Chr4:55795253-55795272 MsG0480021248.01.T01:CDS 30.0%
!!! AGCATTTTTTGTGTTGTTGA+TGG + Chr4:55793549-55793568 None:intergenic 30.0%
!!! CATGAAGGTAAAGTTTTTTC+AGG - Chr4:55795829-55795848 MsG0480021248.01.T01:intron 30.0%
!!! TAAAGTTTTTTCAGGACCTA+GGG - Chr4:55795837-55795856 MsG0480021248.01.T01:intron 30.0%
!!! TGTTCGTGTTTTTTTGTGTA+AGG + Chr4:55793740-55793759 None:intergenic 30.0%
!!! TTTTTGTGTTGTTGATGGTT+GGG + Chr4:55793544-55793563 None:intergenic 30.0%
!!! TTTTTTGTGTTGTTGATGGT+TGG + Chr4:55793545-55793564 None:intergenic 30.0%
AAAATGAGCTTAGCTATCTG+AGG + Chr4:55794929-55794948 None:intergenic 35.0%
AAATTGAACCTGGAAACTGT+GGG + Chr4:55793851-55793870 None:intergenic 35.0%
AAGTATGAGAGAAGACAACA+AGG + Chr4:55795362-55795381 None:intergenic 35.0%
AAGTCAACACAAAAGACCAT+TGG + Chr4:55795608-55795627 None:intergenic 35.0%
ACACAACACAACAAGTAAGT+TGG + Chr4:55794450-55794469 None:intergenic 35.0%
ACTCTAATCAAAGATGTGTC+TGG + Chr4:55794351-55794370 None:intergenic 35.0%
AGAATTTGGGCTTGAAAGTA+AGG - Chr4:55795448-55795467 MsG0480021248.01.T01:intron 35.0%
AGCATAGTACATAAGCTTGA+AGG - Chr4:55796185-55796204 MsG0480021248.01.T01:CDS 35.0%
AGTGAACACTTTCTCGAAAT+CGG + Chr4:55794795-55794814 None:intergenic 35.0%
ATAAGCTCTCACAAGTGATT+GGG + Chr4:55797203-55797222 None:intergenic 35.0%
ATATTGTATCTGAGCAGCAT+TGG + Chr4:55796278-55796297 None:intergenic 35.0%
ATCATAACTGTTCTTCTCCA+AGG - Chr4:55796816-55796835 MsG0480021248.01.T01:intron 35.0%
ATGAGTGAATGCCTCATTAT+TGG + Chr4:55794499-55794518 None:intergenic 35.0%
ATTCCAAAGGTTATAGCTCT+TGG - Chr4:55796143-55796162 MsG0480021248.01.T01:CDS 35.0%
CAACAAGCCCTTAATAAAAG+GGG + Chr4:55797166-55797185 None:intergenic 35.0%
CCAACAAGCCCTTAATAAAA+GGG + Chr4:55797167-55797186 None:intergenic 35.0%
GAAGTTGTTATCTTACAGCT+TGG - Chr4:55795159-55795178 MsG0480021248.01.T01:intron 35.0%
GACGTAAAAAGAAAAACCGA+TGG - Chr4:55796694-55796713 MsG0480021248.01.T01:intron 35.0%
GATGGTTGGGAATTAACAAA+TGG + Chr4:55793531-55793550 None:intergenic 35.0%
GGAAACATAACAGAAACCAT+TGG + Chr4:55795771-55795790 None:intergenic 35.0%
GTTGTGTGTATTGTTGGAAA+TGG - Chr4:55794463-55794482 MsG0480021248.01.T01:CDS 35.0%
TAAATTGAACCTGGAAACTG+TGG + Chr4:55793852-55793871 None:intergenic 35.0%
TACTTATTTGCGCAAAACCA+TGG - Chr4:55796319-55796338 MsG0480021248.01.T01:intron 35.0%
TATTGTATCTGAGCAGCATT+GGG + Chr4:55796277-55796296 None:intergenic 35.0%
TCAATCTACTGTCATGAAAG+AGG - Chr4:55796643-55796662 MsG0480021248.01.T01:intron 35.0%
TCATTGGAATGAAATCTGGT+GGG - Chr4:55794534-55794553 MsG0480021248.01.T01:CDS 35.0%
TCCAACAAGCCCTTAATAAA+AGG + Chr4:55797168-55797187 None:intergenic 35.0%
TCGAATTATTCCAAGACACA+AGG - Chr4:55796514-55796533 MsG0480021248.01.T01:intron 35.0%
TCGTTAAGGGAGAGTTTATT+GGG - Chr4:55795008-55795027 MsG0480021248.01.T01:CDS 35.0%
TGAAGAAGAGGGAATGATTA+TGG - Chr4:55793944-55793963 MsG0480021248.01.T01:intron 35.0%
TGGAAAGTGGAAACAACTTA+TGG - Chr4:55797222-55797241 MsG0480021248.01.T01:CDS 35.0%
TGTGCCAATGAATAGAATTG+CGG - Chr4:55797011-55797030 MsG0480021248.01.T01:CDS 35.0%
TGTTGCACTAATTTCTATCG+TGG - Chr4:55797123-55797142 MsG0480021248.01.T01:CDS 35.0%
TGTTGTGTTGTGTGTATTGT+TGG - Chr4:55794457-55794476 MsG0480021248.01.T01:CDS 35.0%
TTCATCATCACACCGAAAAA+GGG + Chr4:55793928-55793947 None:intergenic 35.0%
TTCGTTAAGGGAGAGTTTAT+TGG - Chr4:55795007-55795026 MsG0480021248.01.T01:CDS 35.0%
TTGGTAAGTTGCTTGCATTT+CGG - Chr4:55795474-55795493 MsG0480021248.01.T01:intron 35.0%
TTTAAAGAAGCAATGCGGAA+GGG - Chr4:55794005-55794024 MsG0480021248.01.T01:intron 35.0%
! CGGTTTTTCTTTTTACGTCT+GGG + Chr4:55796693-55796712 None:intergenic 35.0%
! CTCAGCAGATTAGTTAATTG+AGG + Chr4:55796063-55796082 None:intergenic 35.0%
! GATTTTGCATTGTGTCTTCT+GGG + Chr4:55793696-55793715 None:intergenic 35.0%
! GGGAAATTTTACAAGCATGT+TGG + Chr4:55795882-55795901 None:intergenic 35.0%
! TAATGAGGCATTCACTCATT+CGG - Chr4:55794500-55794519 MsG0480021248.01.T01:CDS 35.0%
! TCGGTTTTTCTTTTTACGTC+TGG + Chr4:55796694-55796713 None:intergenic 35.0%
! TGATTTTGCATTGTGTCTTC+TGG + Chr4:55793697-55793716 None:intergenic 35.0%
! TGGGGTTCTTTTTCTTACTA+AGG + Chr4:55793832-55793851 None:intergenic 35.0%
! TTATTCGGTGAAACACATGT+GGG + Chr4:55794686-55794705 None:intergenic 35.0%
!! AAGCTCATTTTGATGTCAAG+AGG - Chr4:55794938-55794957 MsG0480021248.01.T01:CDS 35.0%
!! AATTTGAGCGTTGATCTTTC+AGG + Chr4:55797571-55797590 None:intergenic 35.0%
!! AGCTCATTTTGATGTCAAGA+GGG - Chr4:55794939-55794958 MsG0480021248.01.T01:CDS 35.0%
!! GGTAATTTGGTTGATAGGTT+GGG - Chr4:55794050-55794069 MsG0480021248.01.T01:intron 35.0%
!! TAGAGTTGTCGGTGTTAAAA+AGG - Chr4:55794365-55794384 MsG0480021248.01.T01:three_prime_UTR 35.0%
!! TGGTAATTTGGTTGATAGGT+TGG - Chr4:55794049-55794068 MsG0480021248.01.T01:intron 35.0%
!! TTATTAAGGGCTTGTTGGAT+TGG - Chr4:55797169-55797188 MsG0480021248.01.T01:CDS 35.0%
!! TTTTAAAGAAGCAATGCGGA+AGG - Chr4:55794004-55794023 MsG0480021248.01.T01:intron 35.0%
!!! AAAGTTTTTTCAGGACCTAG+GGG - Chr4:55795838-55795857 MsG0480021248.01.T01:intron 35.0%
!!! AATGGTCTTTTGTGTTGACT+TGG - Chr4:55795607-55795626 MsG0480021248.01.T01:CDS 35.0%
!!! ATTTTTTCTTCGTGAGGTGT+TGG + Chr4:55793792-55793811 None:intergenic 35.0%
!!! GTAAAGTTTTTTCAGGACCT+AGG - Chr4:55795836-55795855 MsG0480021248.01.T01:intron 35.0%
!!! TCGTGTTTTTTTGTGTAAGG+TGG + Chr4:55793737-55793756 None:intergenic 35.0%
!!! TTTTTTCTTCGTGAGGTGTT+GGG + Chr4:55793791-55793810 None:intergenic 35.0%
AAGGCTATAAGTGAGTAGAG+TGG + Chr4:55795903-55795922 None:intergenic 40.0%
AATTGAACCTGGAAACTGTG+GGG + Chr4:55793850-55793869 None:intergenic 40.0%
ACCCATTGACACATTGACAT+CGG - Chr4:55794268-55794287 MsG0480021248.01.T01:three_prime_UTR 40.0%
ACCGATGTCAATGTGTCAAT+GGG + Chr4:55794272-55794291 None:intergenic 40.0%
ACTTCTTGCACTGTCTAAGA+TGG - Chr4:55797049-55797068 MsG0480021248.01.T01:CDS 40.0%
ACTTGCAATTTATCATCCGC+TGG - Chr4:55796931-55796950 MsG0480021248.01.T01:intron 40.0%
AGAGTTTAATGGAGTCAGGA+GGG - Chr4:55795105-55795124 MsG0480021248.01.T01:intron 40.0%
AGCTATTGAGATTCGTAGGA+AGG - Chr4:55793968-55793987 MsG0480021248.01.T01:intron 40.0%
AGGCTATAAGTGAGTAGAGT+GGG + Chr4:55795902-55795921 None:intergenic 40.0%
AGTCTTCCACAATTCCTATC+AGG + Chr4:55797443-55797462 None:intergenic 40.0%
ATAACTGTTCTTCTCCAAGG+CGG - Chr4:55796819-55796838 MsG0480021248.01.T01:intron 40.0%
ATTATGGGATTACCCGAGAT+GGG - Chr4:55795558-55795577 MsG0480021248.01.T01:CDS 40.0%
CAATCACTTGTGAGAGCTTA+TGG - Chr4:55797202-55797221 MsG0480021248.01.T01:CDS 40.0%
CAATGACATCGTGCAAAGTT+CGG + Chr4:55796346-55796365 None:intergenic 40.0%
CAGAAACTCAGTTGAGGAAA+AGG - Chr4:55796878-55796897 MsG0480021248.01.T01:intron 40.0%
CAGAGTGATAAACTTTGTGG+TGG + Chr4:55796010-55796029 None:intergenic 40.0%
CAGGCCTAATCTTCTTGTAA+AGG + Chr4:55795922-55795941 None:intergenic 40.0%
CATAAGCTCTCACAAGTGAT+TGG + Chr4:55797204-55797223 None:intergenic 40.0%
CGTTAACAGCGATGATATGT+CGG + Chr4:55797495-55797514 None:intergenic 40.0%
CGTTAAGGGAGAGTTTATTG+GGG - Chr4:55795009-55795028 MsG0480021248.01.T01:CDS 40.0%
CTAGCACTCACTCTCTTATT+CGG + Chr4:55794701-55794720 None:intergenic 40.0%
CTTCATCATCACACCGAAAA+AGG + Chr4:55793929-55793948 None:intergenic 40.0%
CTTGCAATTTATCATCCGCT+GGG - Chr4:55796932-55796951 MsG0480021248.01.T01:intron 40.0%
GAGGGAAACTTGAGTCTATA+AGG - Chr4:55794957-55794976 MsG0480021248.01.T01:CDS 40.0%
GATTGAGCGTAAATTGAACC+TGG + Chr4:55793861-55793880 None:intergenic 40.0%
GATTGCCATAGCCAATAATG+AGG - Chr4:55794485-55794504 MsG0480021248.01.T01:CDS 40.0%
GGGGATGCAATGTTAAAAAG+TGG - Chr4:55795028-55795047 MsG0480021248.01.T01:intron 40.0%
GTCATTGGAATGAAATCTGG+TGG - Chr4:55794533-55794552 MsG0480021248.01.T01:CDS 40.0%
GTCTCCGCAATTCTATTCAT+TGG + Chr4:55797018-55797037 None:intergenic 40.0%
GTCTTCCACAATTCCTATCA+GGG + Chr4:55797442-55797461 None:intergenic 40.0%
GTGCAGTTCTATCTGGATAT+GGG - Chr4:55795199-55795218 MsG0480021248.01.T01:intron 40.0%
GTGGTCATTGGAATGAAATC+TGG - Chr4:55794530-55794549 MsG0480021248.01.T01:CDS 40.0%
TACCGATGTCAATGTGTCAA+TGG + Chr4:55794273-55794292 None:intergenic 40.0%
TAGAGTTTAATGGAGTCAGG+AGG - Chr4:55795104-55795123 MsG0480021248.01.T01:intron 40.0%
TATTATGGGATTACCCGAGA+TGG - Chr4:55795557-55795576 MsG0480021248.01.T01:CDS 40.0%
TATTCCAAGACACAAGGTTC+TGG - Chr4:55796520-55796539 MsG0480021248.01.T01:intron 40.0%
TCTTCCACAATTCCTATCAG+GGG + Chr4:55797441-55797460 None:intergenic 40.0%
TGGAAGCTATTGAGATTCGT+AGG - Chr4:55793964-55793983 MsG0480021248.01.T01:intron 40.0%
TGGGATTCATTTCGAAAGTG+TGG - Chr4:55794658-55794677 MsG0480021248.01.T01:intron 40.0%
TGTGCAGTTCTATCTGGATA+TGG - Chr4:55795198-55795217 MsG0480021248.01.T01:intron 40.0%
TGTGGATAGAAGAATGAGGA+AGG + Chr4:55793599-55793618 None:intergenic 40.0%
TTACAAGAAGATTAGGCCTG+TGG - Chr4:55795922-55795941 MsG0480021248.01.T01:CDS 40.0%
TTACAGCTTGGAAGAAGTGA+AGG - Chr4:55795171-55795190 MsG0480021248.01.T01:intron 40.0%
TTGTGAGAGCTTATGGAAAG+TGG - Chr4:55797209-55797228 MsG0480021248.01.T01:CDS 40.0%
TTTGGAAGAAATGAGCCGAA+AGG - Chr4:55795285-55795304 MsG0480021248.01.T01:intron 40.0%
! ATATTCTTGATGACCAAGGC+TGG - Chr4:55796104-55796123 MsG0480021248.01.T01:CDS 40.0%
! CAATTGCTAAAGAGTGTGCT+TGG - Chr4:55796970-55796989 MsG0480021248.01.T01:CDS 40.0%
! CCCTTTTATTAAGGGCTTGT+TGG - Chr4:55797164-55797183 MsG0480021248.01.T01:CDS 40.0%
! CTCCATTGAGTACCCTTTTT+CGG - Chr4:55793913-55793932 MsG0480021248.01.T01:intron 40.0%
! CTTATTCGGTGAAACACATG+TGG + Chr4:55794687-55794706 None:intergenic 40.0%
! GAATGCCTCATTATTGGCTA+TGG + Chr4:55794493-55794512 None:intergenic 40.0%
! GCACTGTCTAAGATGGTTTA+AGG - Chr4:55797056-55797075 MsG0480021248.01.T01:CDS 40.0%
! GGGATTCATTTCGAAAGTGT+GGG - Chr4:55794659-55794678 MsG0480021248.01.T01:intron 40.0%
! GGTCATATTCTTGATGACCA+AGG - Chr4:55796100-55796119 MsG0480021248.01.T01:CDS 40.0%
! GGTTTAGATGCGAAGGATTT+TGG - Chr4:55795220-55795239 MsG0480021248.01.T01:CDS 40.0%
! GTGGAGATAATGTTTTGCTG+CGG - Chr4:55795047-55795066 MsG0480021248.01.T01:intron 40.0%
! TAGACAGTGCAAGAAGTACA+CGG + Chr4:55797046-55797065 None:intergenic 40.0%
! TTGAAGTCGGTGTTCGTTAA+GGG - Chr4:55794995-55795014 MsG0480021248.01.T01:CDS 40.0%
! TTTTCCCCTGATAGGAATTG+TGG - Chr4:55797434-55797453 MsG0480021248.01.T01:CDS 40.0%
!! AATTTGGTTGATAGGTTGGG+TGG - Chr4:55794053-55794072 MsG0480021248.01.T01:intron 40.0%
!! GCAATTCTCTTGCTGTTATC+AGG - Chr4:55796468-55796487 MsG0480021248.01.T01:intron 40.0%
!! GTGCCACTTATCAGGTATTA+TGG - Chr4:55794185-55794204 MsG0480021248.01.T01:three_prime_UTR 40.0%
!! TAGTGAAGTTGGTGAAGGAT+TGG + Chr4:55793763-55793782 None:intergenic 40.0%
!! TCTTGTAGTGAAGTTGGTGA+AGG + Chr4:55793768-55793787 None:intergenic 40.0%
!! TTTTTCAGCTATTCCCTCGA+GGG - Chr4:55796491-55796510 MsG0480021248.01.T01:intron 40.0%
!!! GGTGAGTTTTGGGTTTTTGA+GGG + Chr4:55793622-55793641 None:intergenic 40.0%
!!! GGTTTTGGTGTTGTTCGTTT+GGG + Chr4:55793665-55793684 None:intergenic 40.0%
!!! TACGACTTTTTTCCCCTGAT+AGG - Chr4:55797426-55797445 MsG0480021248.01.T01:CDS 40.0%
!!! TGGTGAGTTTTGGGTTTTTG+AGG + Chr4:55793623-55793642 None:intergenic 40.0%
!!! TGGTTTTGGTGTTGTTCGTT+TGG + Chr4:55793666-55793685 None:intergenic 40.0%
!!! TTCTGGGAATTGGTTGGTTT+TGG + Chr4:55793680-55793699 None:intergenic 40.0%
AAAAGAACCCCACAGTTTCC+AGG - Chr4:55793840-55793859 MsG0480021248.01.T01:intron 45.0%
ACGATGTCATTGAGTTTCCC+AGG - Chr4:55796354-55796373 MsG0480021248.01.T01:intron 45.0%
AGCTCTCGGTCACTATACTT+TGG - Chr4:55795267-55795286 MsG0480021248.01.T01:CDS 45.0%
AGGGTGTGGATAGAAGAATG+AGG + Chr4:55793603-55793622 None:intergenic 45.0%
ATCTCCAAGTGATCCTGATG+TGG - Chr4:55793878-55793897 MsG0480021248.01.T01:intron 45.0%
CTATAAGGAACCGTGTTGAG+TGG - Chr4:55794972-55794991 MsG0480021248.01.T01:CDS 45.0%
GCAATGCGGAAGGGTAAATT+TGG - Chr4:55794014-55794033 MsG0480021248.01.T01:intron 45.0%
GGAGATGACTATTGTGCCAA+AGG - Chr4:55795628-55795647 MsG0480021248.01.T01:CDS 45.0%
GGATATGGGTTTAGATGCGA+AGG - Chr4:55795213-55795232 MsG0480021248.01.T01:CDS 45.0%
GGGCTTGAAAGTAAGGATGT+TGG - Chr4:55795455-55795474 MsG0480021248.01.T01:intron 45.0%
GGTCCAAGAGCTATAACCTT+TGG + Chr4:55796149-55796168 None:intergenic 45.0%
GTATAGTGACCGAGAGCTTT+AGG + Chr4:55795265-55795284 None:intergenic 45.0%
TAACCAGGTGTGTGTTGTGT+CGG - Chr4:55794322-55794341 MsG0480021248.01.T01:three_prime_UTR 45.0%
TAACTGTTCTTCTCCAAGGC+GGG - Chr4:55796820-55796839 MsG0480021248.01.T01:intron 45.0%
TATCTTCACAAGTGACCCAG+CGG + Chr4:55796950-55796969 None:intergenic 45.0%
TCACTCATTCGGCACATATG+TGG - Chr4:55794511-55794530 MsG0480021248.01.T01:CDS 45.0%
TCGTAGGAAGGTTACTGAAG+AGG - Chr4:55793980-55793999 MsG0480021248.01.T01:intron 45.0%
TCTCCAAGTGATCCTGATGT+GGG - Chr4:55793879-55793898 MsG0480021248.01.T01:intron 45.0%
TGAATCTGCTGATACTCAGC+CGG + Chr4:55797540-55797559 None:intergenic 45.0%
TGCATTTCGGCCACAATTGA+TGG - Chr4:55795487-55795506 MsG0480021248.01.T01:intron 45.0%
TGGAATAATTCGACCCTCGA+GGG + Chr4:55796507-55796526 None:intergenic 45.0%
TGTGTCTCGTCACTTCATGT+GGG - Chr4:55794639-55794658 MsG0480021248.01.T01:intron 45.0%
TTAATGGAGTCAGGAGGGAA+TGG - Chr4:55795110-55795129 MsG0480021248.01.T01:intron 45.0%
TTACGTCTGGGCTGTAGATT+GGG + Chr4:55796681-55796700 None:intergenic 45.0%
TTCATTGGCACATTCCACAG+TGG + Chr4:55797003-55797022 None:intergenic 45.0%
TTCGGCACATATGTGGTCAT+TGG - Chr4:55794518-55794537 MsG0480021248.01.T01:CDS 45.0%
TTGGAATAATTCGACCCTCG+AGG + Chr4:55796508-55796527 None:intergenic 45.0%
TTTACGTCTGGGCTGTAGAT+TGG + Chr4:55796682-55796701 None:intergenic 45.0%
! AAGAAAAACCGATGGCTCTG+TGG - Chr4:55796702-55796721 MsG0480021248.01.T01:intron 45.0%
! AATGTTTTGCTGCGGAGTGA+CGG - Chr4:55795055-55795074 MsG0480021248.01.T01:intron 45.0%
! AGACAGTGCAAGAAGTACAC+GGG + Chr4:55797045-55797064 None:intergenic 45.0%
! CGGTGTGATGATGAAGAAGA+GGG - Chr4:55793933-55793952 MsG0480021248.01.T01:intron 45.0%
! CGTGCAGCATTGAAGAACAA+TGG - Chr4:55795510-55795529 MsG0480021248.01.T01:CDS 45.0%
! GCATTGTGTCTTCTGGGAAT+TGG + Chr4:55793690-55793709 None:intergenic 45.0%
! GTTGAAGTCGGTGTTCGTTA+AGG - Chr4:55794994-55795013 MsG0480021248.01.T01:CDS 45.0%
! GTTGGGTCTTGTAGTGAAGT+TGG + Chr4:55793774-55793793 None:intergenic 45.0%
! TCGGTGTGATGATGAAGAAG+AGG - Chr4:55793932-55793951 MsG0480021248.01.T01:intron 45.0%
! TCTGTTTTCCACAGAGCCAT+CGG + Chr4:55796713-55796732 None:intergenic 45.0%
! TGTGTCTTCTGGGAATTGGT+TGG + Chr4:55793686-55793705 None:intergenic 45.0%
!! CACCGAAAAAGGGTACTCAA+TGG + Chr4:55793918-55793937 None:intergenic 45.0%
!! CGAAAAAGGGTACTCAATGG+AGG + Chr4:55793915-55793934 None:intergenic 45.0%
!! CTCAAGTTGTGCCACTTATC+AGG - Chr4:55794177-55794196 MsG0480021248.01.T01:three_prime_UTR 45.0%
!! GGATGGGTTATGTTGTGAGT+CGG - Chr4:55795131-55795150 MsG0480021248.01.T01:intron 45.0%
!! GTTTTTCAGCTATTCCCTCG+AGG - Chr4:55796490-55796509 MsG0480021248.01.T01:intron 45.0%
!! TGACGATGGTGGTGAGTTTT+GGG + Chr4:55793632-55793651 None:intergenic 45.0%
!! TTGACGATGGTGGTGAGTTT+TGG + Chr4:55793633-55793652 None:intergenic 45.0%
!!! GGTGTTGTTCGTTTGGGTTT+TGG + Chr4:55793659-55793678 None:intergenic 45.0%
!!! GTTTTGGGTTTTTGAGGGTG+TGG + Chr4:55793617-55793636 None:intergenic 45.0%
ACCTAGGGGTTCGAAATGAC+GGG - Chr4:55795852-55795871 MsG0480021248.01.T01:CDS 50.0%
ATCGTGCAAAGTTCGGACCA+TGG + Chr4:55796339-55796358 None:intergenic 50.0%
ATGCTGCACGCCATCAATTG+TGG + Chr4:55795500-55795519 None:intergenic 50.0%
CATTCTCCTCATCCCATCTC+GGG + Chr4:55795573-55795592 None:intergenic 50.0%
CCGACTTCAACCACTCAACA+CGG + Chr4:55794985-55795004 None:intergenic 50.0%
CCGTGTTGAGTGGTTGAAGT+CGG - Chr4:55794982-55795001 MsG0480021248.01.T01:CDS 50.0%
GAACCCACATCAGGATCACT+TGG + Chr4:55793885-55793904 None:intergenic 50.0%
GAATCTGCTGATACTCAGCC+GGG + Chr4:55797539-55797558 None:intergenic 50.0%
GACCTAGGGGTTCGAAATGA+CGG - Chr4:55795851-55795870 MsG0480021248.01.T01:CDS 50.0%
GAGTCATTTAACACCCGCCT+TGG + Chr4:55796836-55796855 None:intergenic 50.0%
GCATTCTCCTCATCCCATCT+CGG + Chr4:55795574-55795593 None:intergenic 50.0%
GGAAGTGAAGAACCCACATC+AGG + Chr4:55793894-55793913 None:intergenic 50.0%
GGTTCGTGTGCAGTTCTATC+TGG - Chr4:55795192-55795211 MsG0480021248.01.T01:intron 50.0%
GTGCAGCAGAAACTCAGTTG+AGG - Chr4:55796872-55796891 MsG0480021248.01.T01:intron 50.0%
GTGTGTCTCGTCACTTCATG+TGG - Chr4:55794638-55794657 MsG0480021248.01.T01:CDS 50.0%
TACGTCTGGGCTGTAGATTG+GGG + Chr4:55796680-55796699 None:intergenic 50.0%
TCCACCAGAACCTTGTGTCT+TGG + Chr4:55796527-55796546 None:intergenic 50.0%
TGATACTCAGCCGGGATAGA+CGG + Chr4:55797531-55797550 None:intergenic 50.0%
TGCTTGGAAACATGCCACTG+TGG - Chr4:55796986-55797005 MsG0480021248.01.T01:CDS 50.0%
TGTCTCTCGGCATACGTCTT+CGG - Chr4:55796225-55796244 MsG0480021248.01.T01:CDS 50.0%
TTACCTTGAGCCGTCTATCC+CGG - Chr4:55797518-55797537 MsG0480021248.01.T01:CDS 50.0%
TTCTTCAGTGACTCCAGCCT+TGG + Chr4:55796120-55796139 None:intergenic 50.0%
! ATGTTTTGCTGCGGAGTGAC+GGG - Chr4:55795056-55795075 MsG0480021248.01.T01:intron 50.0%
! TCCAAGACACAAGGTTCTGG+TGG - Chr4:55796523-55796542 MsG0480021248.01.T01:intron 50.0%
!! GTTTTGGCAGTTGACGATGG+TGG + Chr4:55793643-55793662 None:intergenic 50.0%
!! TGCGAAGGATTTTGGCACCA+TGG - Chr4:55795228-55795247 MsG0480021248.01.T01:CDS 50.0%
!! TGGGTTTTGGCAGTTGACGA+TGG + Chr4:55793646-55793665 None:intergenic 50.0%
AGCTCTTGGACCTGAGCTCT+TGG - Chr4:55796157-55796176 MsG0480021248.01.T01:CDS 55.0%
ATGCTGCATCCCAAGAGCTC+AGG + Chr4:55796170-55796189 None:intergenic 55.0%
GCTCTTGGACCTGAGCTCTT+GGG - Chr4:55796158-55796177 MsG0480021248.01.T01:CDS 55.0%
GGAGTCAGGAGGGAATGGAT+GGG - Chr4:55795115-55795134 MsG0480021248.01.T01:intron 55.0%
GGATTACCCGAGATGGGATG+AGG - Chr4:55795564-55795583 MsG0480021248.01.T01:CDS 55.0%
GGCATACGTCTTCGGCAACT+GGG - Chr4:55796233-55796252 MsG0480021248.01.T01:intron 55.0%
TCCCGTCATTTCGAACCCCT+AGG + Chr4:55795856-55795875 None:intergenic 55.0%
TGGAGTCAGGAGGGAATGGA+TGG - Chr4:55795114-55795133 MsG0480021248.01.T01:intron 55.0%
TGTCCGACACAACACACACC+TGG + Chr4:55794328-55794347 None:intergenic 55.0%
! GTGCAAGAAGTACACGGGTC+AGG + Chr4:55797040-55797059 None:intergenic 55.0%
! TGTTTTGCTGCGGAGTGACG+GGG - Chr4:55795057-55795076 MsG0480021248.01.T01:intron 55.0%
CGGCATACGTCTTCGGCAAC+TGG - Chr4:55796232-55796251 MsG0480021248.01.T01:intron 60.0%
CAGCCGGGATAGACGGCTCA+AGG + Chr4:55797524-55797543 None:intergenic 65.0%
! GCTGCGGAGTGACGGGGAGT+TGG - Chr4:55795063-55795082 MsG0480021248.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 55793510 55797637 55793510 ID=MsG0480021248.01;Name=MsG0480021248.01
Chr4 mRNA 55793510 55797637 55793510 ID=MsG0480021248.01.T01;Parent=MsG0480021248.01;Name=MsG0480021248.01.T01;_AED=0.49;_eAED=0.49;_QI=54|0.83|0.85|1|0.83|0.71|7|567|612
Chr4 exon 55793510 55793699 55793510 ID=MsG0480021248.01.T01:exon:19041;Parent=MsG0480021248.01.T01
Chr4 exon 55794070 55794657 55794070 ID=MsG0480021248.01.T01:exon:19040;Parent=MsG0480021248.01.T01
Chr4 five_prime_UTR 55797584 55797637 55797584 ID=MsG0480021248.01.T01:five_prime_utr;Parent=MsG0480021248.01.T01
Chr4 CDS 55796949 55797583 55796949 ID=MsG0480021248.01.T01:cds;Parent=MsG0480021248.01.T01
Chr4 CDS 55795841 55796249 55795841 ID=MsG0480021248.01.T01:cds;Parent=MsG0480021248.01.T01
Chr4 CDS 55795498 55795713 55795498 ID=MsG0480021248.01.T01:cds;Parent=MsG0480021248.01.T01
Chr4 CDS 55795204 55795296 55795204 ID=MsG0480021248.01.T01:cds;Parent=MsG0480021248.01.T01
Chr4 CDS 55794772 55795046 55794772 ID=MsG0480021248.01.T01:cds;Parent=MsG0480021248.01.T01
Chr4 CDS 55794447 55794657 55794447 ID=MsG0480021248.01.T01:cds;Parent=MsG0480021248.01.T01
Chr4 three_prime_UTR 55794070 55794446 55794070 ID=MsG0480021248.01.T01:three_prime_utr;Parent=MsG0480021248.01.T01
Chr4 three_prime_UTR 55793510 55793699 55793510 ID=MsG0480021248.01.T01:three_prime_utr;Parent=MsG0480021248.01.T01
Chr4 mRNA 55793853 55797637 55793853 ID=MsG0480021248.01.T02;Parent=MsG0480021248.01;Name=MsG0480021248.01.T02;_AED=0.49;_eAED=0.49;_QI=54|0.8|0.83|1|1|1|6|594|612
Chr4 exon 55793853 55794657 55793853 ID=MsG0480021248.01.T02:exon:19042;Parent=MsG0480021248.01.T02
Chr4 five_prime_UTR 55797584 55797637 55797584 ID=MsG0480021248.01.T02:five_prime_utr;Parent=MsG0480021248.01.T02
Chr4 CDS 55796949 55797583 55796949 ID=MsG0480021248.01.T02:cds;Parent=MsG0480021248.01.T02
Chr4 CDS 55795841 55796249 55795841 ID=MsG0480021248.01.T02:cds;Parent=MsG0480021248.01.T02
Chr4 CDS 55795498 55795713 55795498 ID=MsG0480021248.01.T02:cds;Parent=MsG0480021248.01.T02
Chr4 CDS 55795204 55795296 55795204 ID=MsG0480021248.01.T02:cds;Parent=MsG0480021248.01.T02
Chr4 CDS 55794772 55795046 55794772 ID=MsG0480021248.01.T02:cds;Parent=MsG0480021248.01.T02
Chr4 CDS 55794447 55794657 55794447 ID=MsG0480021248.01.T02:cds;Parent=MsG0480021248.01.T02
Chr4 three_prime_UTR 55793853 55794446 55793853 ID=MsG0480021248.01.T02:three_prime_utr;Parent=MsG0480021248.01.T02
Gene Sequence

>MsG0480021248.01.T02

ATGCTTCTTTCATATCAAAAACACACTCTTTACCTTCCTCATTCTTCTATCCACACCCTCAAAAACCCAAAACTCACCACCATCGTCAACTGCCAAAACCCAAACGAACAACACCAAAACCAACCAATTCCCAGAAGACACAATGCAAAATCAACATCATTTCTCATTCACCACCTTACACAAAAAAACACGAACACCAATCCTTCACCAACTTCACTACAAGACCCAACACCTCACGAAGAAAAAATTAAACTTTTAGAACTTTCCTTAGTAAGAAAAAGAACCCCACAGTTTCCAGGTTCAATTTACGCTCAATCTCCAAGTGATCCTGATGTGGGTTCTTCACTTCCTCCATTGAGTACCCTTTTTCGGTGTGATGATGAAGAAGAGGGAATGATTATGGAAGCTATTGAGATTCGTAGGAAGGTTACTGAAGAGGTTTTTAAAGAAGCAATGCGGAAGGGTAAATTTGGAATTACTTATACTGGTAATTTGGTTGATAGGTTGGGTGGTTTTATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTGCCGGAATATTCAAATTCGACTTTTAATTTAAGGGCTAAAACTGTTATTGAAGATTCTCAAGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCTCTATCGTATCCTCAGATAGCTAAGCTCATTTTGATGTCAAGAGGGAAACTTGAGTCTATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGTTCGTTAAGGGAGAGTTTATTGGGGATGCAATGTTAAAAAGTGGAGATAATGTTTTGCTGCGGAGTGACGGGGAGTTGGATGAGATTGTTGATTATTTAGAGTTTAATGGAGTCAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTACAGCTTGGAAGAAGTGAAGGTTCGTGTGCAGTTCTATCTGGATATGGGTTTAGATGCGAAGGATTTTGGCACCATGGTTTTTGATTTTCCTAAAGCTCTCGGTCACTATACTTTGGAAGAAATGAGCCGAAAGGTTGATTACTTGAAAGAATTTGGGCTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTCGGCCACAATTGATGGCGTGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAGGAGAATGCTTACAATTAAACCAATGGTCTTTTGTGTTGACTTGGAGATGACTATTGTGCCAAAGGACCTAGGGGTTCGAAATGACGGGATTGCCAACATGCTTGTAAAATTTCCCACTCTACTCACTTATAGCCTTTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAAAATATTCCAAAGGTTATAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGAAGGAAATGTAAAGTATTATTTGTCTCTCGGCATACGTCTTCGGCAACTGGGTGAAATGATTGCTGATTTCCCAATGCTGCTCAGATACAATATAGACGTTCTTCGTCCTAAGTATACTTATTTGCGCAAAACCATGGTCCGAACTTTGCACGATGTCATTGAGTTTCCCAGGTTTTTCAGCTATTCCCTCGAGGGTCGAATTATTCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTCAAGCTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTAACAACATGGTCAAGAATATGATTAGAAAACGCCATAAACTTCAATCTACTGTCATGAAAGAGGATACTAAGCATCCCCAATCTACAGCCCAGACGTAA

>MsG0480021248.01.T01

ATGCTTCTTTCATATCAAAAACACACTCTTTACCTTCCTCATTCTTCTATCCACACCCTCAAAAACCCAAAACTCACCACCATCGTCAACTGCCAAAACCCAAACGAACAACACCAAAACCAACCAATTCCCAGAAGACACAATGCAAAATCAACATCATTTCTCATTCACCACCTTACACAAAAAAACACGAACACCAATCCTTCACCAACTTCACTACAAGACCCAACACCTCACGAAGAAAAAATTAAACTTTTAGAACTTTCCTTAGTAAGAAAAAGAACCCCACAGTTTCCAGGTTCAATTTACGCTCAATCTCCAAGTGATCCTGATGTGGGTTCTTCACTTCCTCCATTGAGTACCCTTTTTCGGTGTGATGATGAAGAAGAGGGAATGATTATGGAAGCTATTGAGATTCGTAGGAAGGTTACTGAAGAGGTTTTTAAAGAAGCAATGCGGAAGGGTAAATTTGGAATTACTTATACTGGTAATTTGGTTGATAGGTTGGGTGGTTTTATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTGCCGGAATATTCAAATTCGACTTTTAATTTAAGGGCTAAAACTGTTATTGAAGATTCTCAAGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCTCTATCGTATCCTCAGATAGCTAAGCTCATTTTGATGTCAAGAGGGAAACTTGAGTCTATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGTTCGTTAAGGGAGAGTTTATTGGGGATGCAATGTTAAAAAGTGGAGATAATGTTTTGCTGCGGAGTGACGGGGAGTTGGATGAGATTGTTGATTATTTAGAGTTTAATGGAGTCAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTACAGCTTGGAAGAAGTGAAGGTTCGTGTGCAGTTCTATCTGGATATGGGTTTAGATGCGAAGGATTTTGGCACCATGGTTTTTGATTTTCCTAAAGCTCTCGGTCACTATACTTTGGAAGAAATGAGCCGAAAGGTTGATTACTTGAAAGAATTTGGGCTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTCGGCCACAATTGATGGCGTGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAGGAGAATGCTTACAATTAAACCAATGGTCTTTTGTGTTGACTTGGAGATGACTATTGTGCCAAAGGACCTAGGGGTTCGAAATGACGGGATTGCCAACATGCTTGTAAAATTTCCCACTCTACTCACTTATAGCCTTTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAAAATATTCCAAAGGTTATAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGAAGGAAATGTAAAGTATTATTTGTCTCTCGGCATACGTCTTCGGCAACTGGGTGAAATGATTGCTGATTTCCCAATGCTGCTCAGATACAATATAGACGTTCTTCGTCCTAAGTATACTTATTTGCGCAAAACCATGGTCCGAACTTTGCACGATGTCATTGAGTTTCCCAGGTTTTTCAGCTATTCCCTCGAGGGTCGAATTATTCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTCAAGCTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTAACAACATGGTCAAGAATATGATTAGAAAACGCCATAAACTTCAATCTACTGTCATGAAAGAGGATACTAAGCATCCCCAATCTACAGCCCAGACGTAA

Protein sequence

>MsG0480021248.01.T02

MLLSYQKHTLYLPHSSIHTLKNPKLTTIVNCQNPNEQHQNQPIPRRHNAKSTSFLIHHLTQKNTNTNPSPTSLQDPTPHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLSTLFRCDDEEEGMIMEAIEIRRKVTEEVFKEAMRKGKFGITYTGNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPQIAKLILMSRGKLESIRNRVEWLKSVFVKGEFIGDAMLKSGDNVLLRSDGELDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLEEVKVRVQFYLDMGLDAKDFGTMVFDFPKALGHYTLEEMSRKVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPKDLGVRNDGIANMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGPELLGCSIVHKLEGNVKYYLSLGIRLRQLGEMIADFPMLLRYNIDVLRPKYTYLRKTMVRTLHDVIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVKNMIRKRHKLQSTVMKEDTKHPQSTAQT*

>MsG0480021248.01.T01

MLLSYQKHTLYLPHSSIHTLKNPKLTTIVNCQNPNEQHQNQPIPRRHNAKSTSFLIHHLTQKNTNTNPSPTSLQDPTPHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLSTLFRCDDEEEGMIMEAIEIRRKVTEEVFKEAMRKGKFGITYTGNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPQIAKLILMSRGKLESIRNRVEWLKSVFVKGEFIGDAMLKSGDNVLLRSDGELDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLEEVKVRVQFYLDMGLDAKDFGTMVFDFPKALGHYTLEEMSRKVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPKDLGVRNDGIANMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGPELLGCSIVHKLEGNVKYYLSLGIRLRQLGEMIADFPMLLRYNIDVLRPKYTYLRKTMVRTLHDVIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVKNMIRKRHKLQSTVMKEDTKHPQSTAQT*