Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046023.01.T01 | XP_013457515.1 | 98.524 | 271 | 3 | 1 | 1 | 270 | 1 | 271 | 0 | 550 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046023.01.T01 | P46604 | 61.806 | 288 | 82 | 9 | 1 | 270 | 1 | 278 | 2.56E-90 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046023.01.T01 | A0A072UQB3 | 98.524 | 271 | 3 | 1 | 1 | 270 | 1 | 271 | 0.0 | 550 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0880046023.01.T01 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048532.01 | MsG0880046023.01 | -0.836369 | 9.744585e-57 | 1.225521e-53 |
| MsG0180001122.01 | MsG0880046023.01 | 0.841940 | 3.502486e-58 | 5.227734e-55 |
| MsG0880044346.01 | MsG0880046023.01 | 0.805920 | 1.057318e-49 | 5.663586e-47 |
| MsG0880046023.01 | MsG0880046560.01 | 0.817605 | 3.023189e-52 | 2.211722e-49 |
| MsG0880046023.01 | MsG0880046890.01 | 0.840618 | 7.800336e-58 | 1.117302e-54 |
| MsG0880046023.01 | MsG0880047285.01 | -0.829737 | 4.355160e-55 | 4.496952e-52 |
| MsG0880046023.01 | MsG0880047558.01 | 0.818671 | 1.735649e-52 | 1.307567e-49 |
| MsG0180005280.01 | MsG0880046023.01 | 0.802240 | 6.163003e-49 | 3.003723e-46 |
| MsG0180005354.01 | MsG0880046023.01 | 0.806070 | 9.832912e-50 | 5.287186e-47 |
| MsG0780040516.01 | MsG0880046023.01 | 0.809996 | 1.435631e-50 | 8.554567e-48 |
| MsG0780041753.01 | MsG0880046023.01 | 0.846685 | 1.859549e-59 | 3.226569e-56 |
| MsG0780041777.01 | MsG0880046023.01 | 0.833084 | 6.533092e-56 | 7.445040e-53 |
| MsG0880042078.01 | MsG0880046023.01 | 0.800157 | 1.644247e-48 | 7.601300e-46 |
| MsG0380012249.01 | MsG0880046023.01 | 0.840365 | 9.084663e-58 | 1.291157e-54 |
| MsG0680030995.01 | MsG0880046023.01 | 0.839873 | 1.221362e-57 | 1.709365e-54 |
| MsG0680034036.01 | MsG0880046023.01 | 0.802609 | 5.171860e-49 | 2.544489e-46 |
| MsG0680035460.01 | MsG0880046023.01 | 0.824075 | 9.822740e-54 | 8.611098e-51 |
| MsG0480021021.01 | MsG0880046023.01 | 0.803962 | 2.714061e-49 | 1.382407e-46 |
| MsG0480022066.01 | MsG0880046023.01 | 0.809583 | 1.761158e-50 | 1.038090e-47 |
| MsG0480022105.01 | MsG0880046023.01 | 0.819177 | 1.331597e-52 | 1.017293e-49 |
| MsG0480022406.01 | MsG0880046023.01 | 0.835252 | 1.870054e-56 | 2.274273e-53 |
| MsG0480023099.01 | MsG0880046023.01 | 0.827786 | 1.290816e-54 | 1.258757e-51 |
| MsG0480023937.01 | MsG0880046023.01 | 0.841118 | 5.767167e-58 | 8.389152e-55 |
| MsG0580024596.01 | MsG0880046023.01 | 0.810384 | 1.184200e-50 | 7.127582e-48 |
| MsG0580024853.01 | MsG0880046023.01 | 0.832740 | 7.953874e-56 | 8.970704e-53 |
| MsG0580025206.01 | MsG0880046023.01 | 0.821989 | 3.010240e-53 | 2.487394e-50 |
| MsG0380015735.01 | MsG0880046023.01 | 0.801788 | 7.632556e-49 | 3.677412e-46 |
| MsG0380015810.01 | MsG0880046023.01 | 0.803828 | 2.893416e-49 | 1.468675e-46 |
| MsG0380015877.01 | MsG0880046023.01 | 0.814455 | 1.527099e-51 | 1.025157e-48 |
| MsG0380015878.01 | MsG0880046023.01 | 0.819856 | 9.324411e-53 | 7.259620e-50 |
| MsG0380015986.01 | MsG0880046023.01 | 0.822665 | 2.098113e-53 | 1.767511e-50 |
| MsG0380017055.01 | MsG0880046023.01 | 0.824462 | 7.967577e-54 | 7.061719e-51 |
| MsG0380017625.01 | MsG0880046023.01 | 0.811930 | 5.471024e-51 | 3.430874e-48 |
| MsG0580027923.01 | MsG0880046023.01 | 0.867962 | 9.291302e-66 | 3.303980e-62 |
| MsG0580029195.01 | MsG0880046023.01 | 0.845845 | 3.148663e-59 | 5.317365e-56 |
| MsG0680030558.01 | MsG0880046023.01 | 0.873800 | 1.110392e-67 | 4.881659e-64 |
| MsG0680030629.01 | MsG0880046023.01 | 0.823213 | 1.563565e-53 | 1.337711e-50 |
| MsG0280006936.01 | MsG0880046023.01 | 0.803348 | 3.638232e-49 | 1.824009e-46 |
| MsG0280007481.01 | MsG0880046023.01 | 0.843335 | 1.492867e-58 | 2.328460e-55 |
| MsG0280007537.01 | MsG0880046023.01 | 0.846281 | 2.397275e-59 | 4.104997e-56 |
| MsG0280007826.01 | MsG0880046023.01 | 0.804357 | 2.245540e-49 | 1.155413e-46 |
| MsG0280007864.01 | MsG0880046023.01 | -0.801571 | 8.454987e-49 | 4.051321e-46 |
| MsG0280008220.01 | MsG0880046023.01 | 0.802567 | 5.275700e-49 | 2.592735e-46 |
| MsG0280008295.01 | MsG0880046023.01 | 0.827246 | 1.738925e-54 | 1.669488e-51 |
| MsG0680035844.01 | MsG0880046023.01 | 0.803819 | 2.905298e-49 | 1.474378e-46 |
| MsG0780036630.01 | MsG0880046023.01 | 0.818208 | 2.209475e-52 | 1.643395e-49 |
| MsG0780036635.01 | MsG0880046023.01 | 0.804115 | 2.521713e-49 | 1.289481e-46 |
| MsG0780038117.01 | MsG0880046023.01 | 0.801480 | 8.829041e-49 | 4.220912e-46 |
| MsG0780038644.01 | MsG0880046023.01 | 0.800842 | 1.192112e-48 | 5.608092e-46 |
| MsG0780039875.01 | MsG0880046023.01 | 0.807685 | 4.480438e-50 | 2.511540e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046023.01.T01 | MTR_4g097600 | 98.524 | 271 | 3 | 1 | 1 | 270 | 1 | 271 | 0.0 | 550 |
| MsG0880046023.01.T01 | MTR_5g014890 | 63.860 | 285 | 73 | 8 | 1 | 270 | 1 | 270 | 1.32e-102 | 300 |
| MsG0880046023.01.T01 | MTR_1g054285 | 62.963 | 189 | 48 | 4 | 68 | 255 | 116 | 283 | 3.77e-72 | 223 |
| MsG0880046023.01.T01 | MTR_2g061030 | 76.119 | 134 | 31 | 1 | 108 | 240 | 180 | 313 | 1.86e-67 | 213 |
| MsG0880046023.01.T01 | MTR_7g093430 | 76.984 | 126 | 27 | 1 | 115 | 240 | 150 | 273 | 1.12e-65 | 207 |
| MsG0880046023.01.T01 | MTR_5g013010 | 68.293 | 164 | 42 | 4 | 79 | 240 | 95 | 250 | 2.99e-65 | 206 |
| MsG0880046023.01.T01 | MTR_1g017090 | 45.847 | 301 | 114 | 9 | 5 | 270 | 2 | 288 | 8.03e-65 | 204 |
| MsG0880046023.01.T01 | MTR_4g100550 | 66.667 | 162 | 41 | 2 | 80 | 240 | 85 | 234 | 1.04e-64 | 204 |
| MsG0880046023.01.T01 | MTR_8g006705 | 82.456 | 114 | 19 | 1 | 126 | 238 | 145 | 258 | 7.95e-62 | 197 |
| MsG0880046023.01.T01 | MTR_3g103590 | 54.124 | 194 | 64 | 6 | 90 | 268 | 117 | 300 | 7.44e-50 | 166 |
| MsG0880046023.01.T01 | MTR_4g084750 | 63.866 | 119 | 37 | 1 | 126 | 238 | 64 | 182 | 1.06e-48 | 160 |
| MsG0880046023.01.T01 | MTR_2g038625 | 44.211 | 190 | 93 | 4 | 54 | 239 | 15 | 195 | 1.42e-39 | 137 |
| MsG0880046023.01.T01 | MTR_2g038580 | 44.211 | 190 | 93 | 4 | 54 | 239 | 15 | 195 | 1.42e-39 | 137 |
| MsG0880046023.01.T01 | MTR_4g126900 | 59.649 | 114 | 42 | 2 | 129 | 238 | 90 | 203 | 4.03e-35 | 125 |
| MsG0880046023.01.T01 | MTR_5g013010 | 62.376 | 101 | 29 | 3 | 79 | 178 | 95 | 187 | 6.51e-28 | 106 |
| MsG0880046023.01.T01 | MTR_5g039000 | 47.664 | 107 | 54 | 1 | 114 | 218 | 62 | 168 | 4.45e-21 | 90.5 |
| MsG0880046023.01.T01 | MTR_7g103340 | 42.991 | 107 | 61 | 0 | 108 | 214 | 44 | 150 | 1.76e-20 | 87.8 |
| MsG0880046023.01.T01 | MTR_3g080100 | 35.417 | 192 | 112 | 5 | 80 | 261 | 12 | 201 | 3.66e-20 | 87.4 |
| MsG0880046023.01.T01 | MTR_3g080100 | 38.365 | 159 | 88 | 4 | 113 | 261 | 4 | 162 | 6.93e-20 | 85.9 |
| MsG0880046023.01.T01 | MTR_8g468210 | 42.735 | 117 | 64 | 1 | 102 | 218 | 55 | 168 | 1.18e-19 | 86.7 |
| MsG0880046023.01.T01 | MTR_7g010020 | 46.602 | 103 | 51 | 1 | 118 | 216 | 71 | 173 | 5.38e-19 | 84.3 |
| MsG0880046023.01.T01 | MTR_6g007647 | 50.000 | 88 | 44 | 0 | 127 | 214 | 33 | 120 | 6.76e-19 | 84.0 |
| MsG0880046023.01.T01 | MTR_1g061660 | 48.315 | 89 | 46 | 0 | 127 | 215 | 59 | 147 | 6.79e-19 | 83.6 |
| MsG0880046023.01.T01 | MTR_6g007647 | 50.000 | 88 | 44 | 0 | 127 | 214 | 67 | 154 | 7.67e-19 | 84.3 |
| MsG0880046023.01.T01 | MTR_4g107650 | 45.455 | 99 | 54 | 0 | 116 | 214 | 84 | 182 | 2.62e-17 | 80.9 |
| MsG0880046023.01.T01 | MTR_8g089895 | 47.170 | 106 | 47 | 2 | 118 | 214 | 43 | 148 | 3.41e-17 | 80.1 |
| MsG0880046023.01.T01 | MTR_3g086790 | 37.975 | 158 | 85 | 5 | 119 | 265 | 52 | 207 | 4.46e-17 | 79.7 |
| MsG0880046023.01.T01 | MTR_6g011610 | 45.192 | 104 | 49 | 2 | 118 | 213 | 86 | 189 | 8.74e-17 | 78.6 |
| MsG0880046023.01.T01 | MTR_5g038280 | 40.000 | 135 | 65 | 3 | 87 | 213 | 54 | 180 | 9.95e-17 | 79.0 |
| MsG0880046023.01.T01 | MTR_6g011610 | 45.192 | 104 | 49 | 2 | 118 | 213 | 67 | 170 | 1.63e-16 | 77.4 |
| MsG0880046023.01.T01 | MTR_8g469430 | 46.809 | 94 | 43 | 1 | 127 | 213 | 89 | 182 | 7.80e-16 | 75.9 |
| MsG0880046023.01.T01 | MTR_5g019680 | 43.689 | 103 | 53 | 1 | 119 | 221 | 45 | 142 | 1.12e-12 | 65.9 |
| MsG0880046023.01.T01 | MTR_5g019650 | 42.857 | 105 | 58 | 1 | 119 | 221 | 45 | 149 | 1.21e-12 | 65.9 |
| MsG0880046023.01.T01 | MTR_3g092150 | 43.011 | 93 | 46 | 1 | 130 | 215 | 41 | 133 | 3.45e-12 | 65.1 |
| MsG0880046023.01.T01 | MTR_8g026960 | 42.683 | 82 | 47 | 0 | 131 | 212 | 38 | 119 | 2.30e-11 | 62.8 |
| MsG0880046023.01.T01 | MTR_5g029320 | 35.849 | 106 | 68 | 0 | 118 | 223 | 83 | 188 | 5.08e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046023.01.T01 | AT4G37790 | 61.806 | 288 | 82 | 9 | 1 | 270 | 1 | 278 | 2.61e-91 | 271 |
| MsG0880046023.01.T01 | AT2G22800 | 58.163 | 294 | 79 | 11 | 1 | 270 | 1 | 274 | 2.63e-83 | 251 |
| MsG0880046023.01.T01 | AT5G06710 | 61.376 | 189 | 56 | 4 | 76 | 254 | 136 | 317 | 4.98e-70 | 219 |
| MsG0880046023.01.T01 | AT5G47370 | 57.789 | 199 | 74 | 4 | 72 | 264 | 70 | 264 | 1.75e-66 | 208 |
| MsG0880046023.01.T01 | AT3G60390 | 60.656 | 183 | 57 | 6 | 69 | 238 | 94 | 274 | 1.22e-62 | 199 |
| MsG0880046023.01.T01 | AT4G17460 | 60.221 | 181 | 64 | 5 | 68 | 241 | 71 | 250 | 4.76e-62 | 197 |
| MsG0880046023.01.T01 | AT4G16780 | 75.194 | 129 | 30 | 2 | 112 | 239 | 115 | 242 | 1.99e-61 | 196 |
| MsG0880046023.01.T01 | AT2G44910 | 79.130 | 115 | 23 | 1 | 126 | 239 | 162 | 276 | 7.20e-59 | 190 |
| MsG0880046023.01.T01 | AT2G01430 | 54.676 | 139 | 56 | 2 | 106 | 239 | 113 | 249 | 2.41e-44 | 151 |
| MsG0880046023.01.T01 | AT1G70920 | 52.941 | 136 | 57 | 1 | 114 | 249 | 26 | 154 | 1.03e-40 | 139 |
| MsG0880046023.01.T01 | AT1G70920 | 56.349 | 126 | 48 | 1 | 114 | 239 | 56 | 174 | 1.19e-40 | 140 |
| MsG0880046023.01.T01 | AT5G06710 | 59.292 | 113 | 29 | 4 | 76 | 178 | 136 | 241 | 5.01e-30 | 114 |
| MsG0880046023.01.T01 | AT2G01430 | 50.526 | 95 | 40 | 2 | 106 | 195 | 113 | 205 | 1.12e-22 | 93.2 |
| MsG0880046023.01.T01 | AT1G69780 | 46.465 | 99 | 53 | 0 | 116 | 214 | 74 | 172 | 7.53e-20 | 87.4 |
| MsG0880046023.01.T01 | AT1G26960 | 41.964 | 112 | 65 | 0 | 119 | 230 | 63 | 174 | 2.21e-19 | 85.1 |
| MsG0880046023.01.T01 | AT5G03790 | 35.374 | 147 | 79 | 2 | 127 | 257 | 77 | 223 | 3.74e-18 | 81.6 |
| MsG0880046023.01.T01 | AT5G65310 | 45.000 | 100 | 48 | 1 | 122 | 214 | 67 | 166 | 1.59e-16 | 78.2 |
| MsG0880046023.01.T01 | AT3G01470 | 45.161 | 93 | 44 | 1 | 127 | 212 | 68 | 160 | 1.81e-16 | 77.4 |
| MsG0880046023.01.T01 | AT5G65310 | 45.000 | 100 | 48 | 1 | 122 | 214 | 49 | 148 | 1.98e-16 | 77.8 |
| MsG0880046023.01.T01 | AT2G18550 | 44.000 | 100 | 56 | 0 | 114 | 213 | 48 | 147 | 8.10e-16 | 74.7 |
| MsG0880046023.01.T01 | AT5G03790 | 47.253 | 91 | 48 | 0 | 127 | 217 | 77 | 167 | 9.71e-16 | 73.9 |
| MsG0880046023.01.T01 | AT5G15150 | 42.478 | 113 | 56 | 3 | 113 | 216 | 96 | 208 | 1.32e-15 | 75.9 |
| MsG0880046023.01.T01 | AT4G36740 | 44.681 | 94 | 52 | 0 | 120 | 213 | 49 | 142 | 2.40e-15 | 73.6 |
| MsG0880046023.01.T01 | AT4G36740 | 44.681 | 94 | 52 | 0 | 120 | 213 | 48 | 141 | 2.43e-15 | 73.6 |
| MsG0880046023.01.T01 | AT4G40060 | 44.330 | 97 | 47 | 1 | 125 | 214 | 57 | 153 | 2.55e-15 | 74.7 |
| MsG0880046023.01.T01 | AT3G01220 | 43.269 | 104 | 53 | 2 | 119 | 216 | 77 | 180 | 2.91e-15 | 74.3 |
| MsG0880046023.01.T01 | AT1G27045 | 46.875 | 96 | 44 | 1 | 127 | 215 | 68 | 163 | 4.78e-15 | 73.2 |
| MsG0880046023.01.T01 | AT1G27045 | 40.909 | 132 | 62 | 3 | 127 | 250 | 68 | 191 | 5.93e-15 | 72.4 |
| MsG0880046023.01.T01 | AT1G27045 | 57.576 | 66 | 28 | 0 | 127 | 192 | 17 | 82 | 8.86e-15 | 70.9 |
| MsG0880046023.01.T01 | AT1G27045 | 57.576 | 66 | 28 | 0 | 127 | 192 | 25 | 90 | 9.66e-15 | 71.2 |
| MsG0880046023.01.T01 | AT1G27045 | 57.576 | 66 | 28 | 0 | 127 | 192 | 25 | 90 | 9.66e-15 | 71.2 |
| MsG0880046023.01.T01 | AT2G36610 | 40.816 | 98 | 50 | 1 | 126 | 215 | 70 | 167 | 3.41e-14 | 69.7 |
| MsG0880046023.01.T01 | AT2G22430 | 43.750 | 96 | 50 | 1 | 125 | 216 | 60 | 155 | 7.55e-14 | 70.5 |
| MsG0880046023.01.T01 | AT2G46680 | 43.011 | 93 | 49 | 1 | 130 | 218 | 35 | 127 | 1.56e-13 | 68.9 |
| MsG0880046023.01.T01 | AT2G46680 | 41.111 | 90 | 53 | 0 | 130 | 219 | 35 | 124 | 1.57e-13 | 68.9 |
| MsG0880046023.01.T01 | AT5G06710 | 51.163 | 86 | 25 | 4 | 76 | 151 | 136 | 214 | 4.11e-12 | 64.7 |
| MsG0880046023.01.T01 | AT5G06710 | 51.163 | 86 | 25 | 4 | 76 | 151 | 136 | 214 | 4.11e-12 | 64.7 |
| MsG0880046023.01.T01 | AT3G61890 | 38.947 | 95 | 44 | 1 | 130 | 210 | 33 | 127 | 2.73e-11 | 62.4 |
| MsG0880046023.01.T01 | AT5G66700 | 44.872 | 78 | 43 | 0 | 115 | 192 | 59 | 136 | 6.58e-11 | 61.2 |
| MsG0880046023.01.T01 | AT1G79840 | 43.373 | 83 | 46 | 1 | 126 | 207 | 102 | 184 | 9.84e-11 | 62.4 |
Find 67 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGAGAAATTGCTCTTAT+TGG | 0.187884 | 8:-67805385 | None:intergenic |
| CTAGGTGGTGGTGGTGTTAA+TGG | 0.243245 | 8:+67805354 | MsG0880046023.01.T01:CDS |
| TCAGGCCTTCAACTTATTCT+AGG | 0.257483 | 8:+67804120 | MsG0880046023.01.T01:CDS |
| ATGTTTCACAACATTTCTTT+AGG | 0.284664 | 8:-67805209 | None:intergenic |
| AGAGAGAGAGATTGGTAATA+AGG | 0.313031 | 8:-67804052 | None:intergenic |
| GGTACCTGGCTCTACGGTTC+TGG | 0.335278 | 8:-67804699 | None:intergenic |
| TTATGATTACTTGAGGAATA+AGG | 0.345806 | 8:-67804201 | None:intergenic |
| AAGCATAGCAGATTGATCTT+TGG | 0.351274 | 8:-67804481 | None:intergenic |
| GGATGGTGGTGTGTCTTGTT+TGG | 0.360529 | 8:-67804160 | None:intergenic |
| TCTCTCTTGAGTTATCTTGA+TGG | 0.382425 | 8:+67804068 | MsG0880046023.01.T01:exon |
| CTCTCTTGAGTTATCTTGAT+GGG | 0.399406 | 8:+67804069 | MsG0880046023.01.T01:exon |
| ATAACTCAAGAGAGAGAGAT+TGG | 0.433571 | 8:-67804060 | None:intergenic |
| TGTTAGCAGTGAATTAGAAA+TGG | 0.445208 | 8:+67804371 | MsG0880046023.01.T01:CDS |
| CACATGAAGGACACATAGTA+AGG | 0.448920 | 8:-67805326 | None:intergenic |
| AAGAGAAGAGAAGAAAGGTA+AGG | 0.451793 | 8:-67804004 | None:intergenic |
| AGGCTTTGTAACGTTGTTGT+TGG | 0.454137 | 8:-67804181 | None:intergenic |
| AAACATTAACAGAAGAGAAT+AGG | 0.467293 | 8:+67805226 | MsG0880046023.01.T01:CDS |
| AAGAAAGGTAAGGGAAGAGT+GGG | 0.469487 | 8:-67803994 | None:intergenic |
| GCTGAACCATCTTTAACGTT+GGG | 0.469771 | 8:+67804234 | MsG0880046023.01.T01:CDS |
| AAAGGAGGTGCAAGAATTGA+AGG | 0.482533 | 8:+67805257 | MsG0880046023.01.T01:CDS |
| AGCTGAACCATCTTTAACGT+TGG | 0.482898 | 8:+67804233 | MsG0880046023.01.T01:CDS |
| CTAAGCCTAGAATAAGTTGA+AGG | 0.488952 | 8:-67804125 | None:intergenic |
| GAAGAAAGGTAAGGGAAGAG+TGG | 0.493787 | 8:-67803995 | None:intergenic |
| TTGTTTCATCTTTCTCTAGT+GGG | 0.496061 | 8:+67804328 | MsG0880046023.01.T01:CDS |
| TTCTTCATAGTAACTCTTGG+TGG | 0.498912 | 8:-67804262 | None:intergenic |
| AGGTGTTAGATTTAACTCTC+TGG | 0.498987 | 8:-67804656 | None:intergenic |
| TTCATCTTTCTCTAGTGGGA+GGG | 0.505690 | 8:+67804332 | MsG0880046023.01.T01:CDS |
| CACCTCGACAAGTTGAGGTC+TGG | 0.514656 | 8:+67804674 | MsG0880046023.01.T01:CDS |
| GTAAGGGTAGCTGCTGGCAT+AGG | 0.516800 | 8:-67805309 | None:intergenic |
| GTTGTTTCATCTTTCTCTAG+TGG | 0.516924 | 8:+67804327 | MsG0880046023.01.T01:CDS |
| AGGTTCTTCATAGTAACTCT+TGG | 0.520099 | 8:-67804265 | None:intergenic |
| AAGGGAAGAGAAGAGAAGAA+AGG | 0.520574 | 8:-67804009 | None:intergenic |
| GGTTCCAGAACCGTAGAGCC+AGG | 0.526669 | 8:+67804695 | MsG0880046023.01.T01:CDS |
| TTTCATCTTTCTCTAGTGGG+AGG | 0.528407 | 8:+67804331 | MsG0880046023.01.T01:CDS |
| AGAGAAGAGAAGAAAGGTAA+GGG | 0.528734 | 8:-67804003 | None:intergenic |
| GTGAAGGGGTTGTAAAAGTG+AGG | 0.536068 | 8:-67805408 | None:intergenic |
| TTTGTAACGTTGTTGTTGGA+TGG | 0.545023 | 8:-67804177 | None:intergenic |
| GATAAACCCAACGTTAAAGA+TGG | 0.545369 | 8:-67804240 | None:intergenic |
| AGAGAATAGGAGGCTACAAA+AGG | 0.550932 | 8:+67805239 | MsG0880046023.01.T01:CDS |
| AGAAATGGAAACGACGGAGA+TGG | 0.553541 | 8:+67804386 | MsG0880046023.01.T01:CDS |
| TGCTGGCATAGGCATATACA+AGG | 0.554332 | 8:-67805298 | None:intergenic |
| TGTATAGGTACCTGGCTCTA+CGG | 0.565795 | 8:-67804705 | None:intergenic |
| AAAGCTGAAGCAAACAGAAG+TGG | 0.566126 | 8:+67805176 | MsG0880046023.01.T01:CDS |
| TGTGAGAGACTAGGTGGTGG+TGG | 0.571619 | 8:+67805345 | MsG0880046023.01.T01:CDS |
| TCTAACACCTCGACAAGTTG+AGG | 0.578186 | 8:+67804669 | MsG0880046023.01.T01:CDS |
| CATTAACAGAAGAGAATAGG+AGG | 0.587793 | 8:+67805229 | MsG0880046023.01.T01:CDS |
| ATAGTTGTTATGATTACTTG+AGG | 0.592747 | 8:-67804208 | None:intergenic |
| AAGACGGTGCCACTGCAGCT+AGG | 0.595899 | 8:+67804442 | MsG0880046023.01.T01:CDS |
| CCACCTAGTCTCTCACATGA+AGG | 0.597382 | 8:-67805339 | None:intergenic |
| AAGCTTCTTCCTAGCTGCAG+TGG | 0.601402 | 8:-67804451 | None:intergenic |
| CACATAGTAAGGGTAGCTGC+TGG | 0.601478 | 8:-67805315 | None:intergenic |
| CAAGATGCTAGTAACAACTC+AGG | 0.601537 | 8:+67804102 | MsG0880046023.01.T01:CDS |
| GTAACGTTGTTGTTGGATGG+TGG | 0.602624 | 8:-67804174 | None:intergenic |
| GAATAGGAGGCTACAAAAGG+AGG | 0.603538 | 8:+67805242 | MsG0880046023.01.T01:CDS |
| GGTGGTGGTGGTGTTAATGG+TGG | 0.605462 | 8:+67805357 | MsG0880046023.01.T01:CDS |
| TGCTGCTGAAGAATTTGTGA+AGG | 0.622725 | 8:-67805424 | None:intergenic |
| AACCAGACCTCAACTTGTCG+AGG | 0.626268 | 8:-67804676 | None:intergenic |
| TGAATTAGAAATGGAAACGA+CGG | 0.634393 | 8:+67804380 | MsG0880046023.01.T01:CDS |
| GCTGCTGAAGAATTTGTGAA+GGG | 0.658168 | 8:-67805423 | None:intergenic |
| ACATGAAGGACACATAGTAA+GGG | 0.658983 | 8:-67805325 | None:intergenic |
| CCTTCATGTGAGAGACTAGG+TGG | 0.665742 | 8:+67805339 | MsG0880046023.01.T01:CDS |
| GATGAAACAACGCTGTGATG+AGG | 0.669037 | 8:-67804315 | None:intergenic |
| TCATGTGAGAGACTAGGTGG+TGG | 0.669612 | 8:+67805342 | MsG0880046023.01.T01:CDS |
| ATCAGCGATGAAGATGAAGA+CGG | 0.672472 | 8:+67804426 | MsG0880046023.01.T01:CDS |
| TGTCCTTCATGTGAGAGACT+AGG | 0.681664 | 8:+67805336 | MsG0880046023.01.T01:CDS |
| CTGCTGAAGAATTTGTGAAG+GGG | 0.685286 | 8:-67805422 | None:intergenic |
| GCTGGCATAGGCATATACAA+GGG | 0.757470 | 8:-67805297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTGATAAATAAATG+AGG | - | Chr8:67804602-67804621 | None:intergenic | 10.0% |
| !! | ATTATCTTCAAATTAATTAA+GGG | + | Chr8:67804938-67804957 | MsG0880046023.01.T01:intron | 10.0% |
| !! | TATTATCTTCAAATTAATTA+AGG | + | Chr8:67804937-67804956 | MsG0880046023.01.T01:intron | 10.0% |
| !!! | TGTAATATTAAGATTATTTT+TGG | + | Chr8:67805129-67805148 | MsG0880046023.01.T01:intron | 10.0% |
| !! | AATACATATACTATTGTAAA+TGG | + | Chr8:67804986-67805005 | MsG0880046023.01.T01:intron | 15.0% |
| !! | AATTAAATTAAACTCAACTA+TGG | + | Chr8:67804759-67804778 | MsG0880046023.01.T01:intron | 15.0% |
| !! | ATTTACAATAGTATATGTAT+TGG | - | Chr8:67804987-67805006 | None:intergenic | 15.0% |
| !! | ATTTGAAGATAATATTTCAT+TGG | - | Chr8:67804931-67804950 | None:intergenic | 15.0% |
| !!! | TATTAAGATTATTTTTGGTT+TGG | + | Chr8:67805134-67805153 | MsG0880046023.01.T01:intron | 15.0% |
| !!! | TATTTATCAAATTTTTGTGA+TGG | + | Chr8:67804606-67804625 | MsG0880046023.01.T01:intron | 15.0% |
| !! | TTATGCATATATGTATGTAT+AGG | - | Chr8:67804723-67804742 | None:intergenic | 20.0% |
| !!! | ATTATTTTTGGTTTGGATTT+TGG | + | Chr8:67805141-67805160 | MsG0880046023.01.T01:intron | 20.0% |
| !!! | TTATTTTTGGTTTGGATTTT+GGG | + | Chr8:67805142-67805161 | MsG0880046023.01.T01:intron | 20.0% |
| !!! | TTTTCAATTGAAGTTATTCT+GGG | - | Chr8:67805016-67805035 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTGAAGTTATTC+TGG | - | Chr8:67805017-67805036 | None:intergenic | 20.0% |
| ! | AAACATTAACAGAAGAGAAT+AGG | + | Chr8:67805226-67805245 | MsG0880046023.01.T01:CDS | 25.0% |
| ! | ATAGTTGTTATGATTACTTG+AGG | - | Chr8:67804211-67804230 | None:intergenic | 25.0% |
| ! | ATGTTTCACAACATTTCTTT+AGG | - | Chr8:67805212-67805231 | None:intergenic | 25.0% |
| ! | CATATACTATTGTAAATGGA+TGG | + | Chr8:67804990-67805009 | MsG0880046023.01.T01:intron | 25.0% |
| ! | CCAATATGAAGATTATGTAA+TGG | - | Chr8:67804807-67804826 | None:intergenic | 25.0% |
| ! | CCATTACATAATCTTCATAT+TGG | + | Chr8:67804804-67804823 | MsG0880046023.01.T01:intron | 25.0% |
| ! | GAGATTATGATTATGATTAC+AGG | - | Chr8:67804540-67804559 | None:intergenic | 25.0% |
| ! | TTATGATTACTTGAGGAATA+AGG | - | Chr8:67804204-67804223 | None:intergenic | 25.0% |
| !! | GTGTCGACAAAAAAAATTAT+GGG | + | Chr8:67805082-67805101 | MsG0880046023.01.T01:intron | 25.0% |
| !! | TGTGTCGACAAAAAAAATTA+TGG | + | Chr8:67805081-67805100 | MsG0880046023.01.T01:intron | 25.0% |
| !!! | TCAACTATGGTTTTAAATTG+CGG | + | Chr8:67804772-67804791 | MsG0880046023.01.T01:intron | 25.0% |
| !!! | TTTTTGTTTTGTGAAAGGAA+GGG | - | Chr8:67804030-67804049 | None:intergenic | 25.0% |
| CTTAGAGAAATTGCTCTTAT+TGG | - | Chr8:67805388-67805407 | None:intergenic | 30.0% | |
| GGTGATATATGATATTTACG+TGG | - | Chr8:67804966-67804985 | None:intergenic | 30.0% | |
| GTTTGTGTAGAAAAATCAAG+AGG | - | Chr8:67804288-67804307 | None:intergenic | 30.0% | |
| TATATGTATGTATAGGTACC+TGG | - | Chr8:67804716-67804735 | None:intergenic | 30.0% | |
| TGAATTAGAAATGGAAACGA+CGG | + | Chr8:67804380-67804399 | MsG0880046023.01.T01:CDS | 30.0% | |
| TGTTAGCAGTGAATTAGAAA+TGG | + | Chr8:67804371-67804390 | MsG0880046023.01.T01:CDS | 30.0% | |
| TTGTTTCATCTTTCTCTAGT+GGG | + | Chr8:67804328-67804347 | MsG0880046023.01.T01:CDS | 30.0% | |
| !!! | AGGTGTTTTTGTTTTGTGAA+AGG | - | Chr8:67804035-67804054 | None:intergenic | 30.0% |
| !!! | GTTTTTGTTTTGTGAAAGGA+AGG | - | Chr8:67804031-67804050 | None:intergenic | 30.0% |
| !!! | TGCGAATATAACTGTTTTTG+AGG | - | Chr8:67804876-67804895 | None:intergenic | 30.0% |
| AAGAGAAGAGAAGAAAGGTA+AGG | - | Chr8:67804007-67804026 | None:intergenic | 35.0% | |
| AAGCATAGCAGATTGATCTT+TGG | - | Chr8:67804484-67804503 | None:intergenic | 35.0% | |
| ACATGAAGGACACATAGTAA+GGG | - | Chr8:67805328-67805347 | None:intergenic | 35.0% | |
| AGAGAAGAGAAGAAAGGTAA+GGG | - | Chr8:67804006-67804025 | None:intergenic | 35.0% | |
| AGGTGTTAGATTTAACTCTC+TGG | - | Chr8:67804659-67804678 | None:intergenic | 35.0% | |
| AGGTTCTTCATAGTAACTCT+TGG | - | Chr8:67804268-67804287 | None:intergenic | 35.0% | |
| ATAACTCAAGAGAGAGAGAT+TGG | - | Chr8:67804063-67804082 | None:intergenic | 35.0% | |
| CATTAACAGAAGAGAATAGG+AGG | + | Chr8:67805229-67805248 | MsG0880046023.01.T01:CDS | 35.0% | |
| CTCTCTTGAGTTATCTTGAT+GGG | + | Chr8:67804069-67804088 | MsG0880046023.01.T01:exon | 35.0% | |
| GATAAACCCAACGTTAAAGA+TGG | - | Chr8:67804243-67804262 | None:intergenic | 35.0% | |
| TCTCTCTTGAGTTATCTTGA+TGG | + | Chr8:67804068-67804087 | MsG0880046023.01.T01:exon | 35.0% | |
| TTCTTCATAGTAACTCTTGG+TGG | - | Chr8:67804265-67804284 | None:intergenic | 35.0% | |
| ! | AGAGAGAGAGATTGGTAATA+AGG | - | Chr8:67804055-67804074 | None:intergenic | 35.0% |
| ! | CTAAGCCTAGAATAAGTTGA+AGG | - | Chr8:67804128-67804147 | None:intergenic | 35.0% |
| ! | GTTGTTTCATCTTTCTCTAG+TGG | + | Chr8:67804327-67804346 | MsG0880046023.01.T01:CDS | 35.0% |
| ! | TTTGTAACGTTGTTGTTGGA+TGG | - | Chr8:67804180-67804199 | None:intergenic | 35.0% |
| AAAGCTGAAGCAAACAGAAG+TGG | + | Chr8:67805176-67805195 | MsG0880046023.01.T01:CDS | 40.0% | |
| AAGAAAGGTAAGGGAAGAGT+GGG | - | Chr8:67803997-67804016 | None:intergenic | 40.0% | |
| AAGGGAAGAGAAGAGAAGAA+AGG | - | Chr8:67804012-67804031 | None:intergenic | 40.0% | |
| AGAGAATAGGAGGCTACAAA+AGG | + | Chr8:67805239-67805258 | MsG0880046023.01.T01:CDS | 40.0% | |
| AGCTGAACCATCTTTAACGT+TGG | + | Chr8:67804233-67804252 | MsG0880046023.01.T01:CDS | 40.0% | |
| ATCAGCGATGAAGATGAAGA+CGG | + | Chr8:67804426-67804445 | MsG0880046023.01.T01:CDS | 40.0% | |
| CAAGATGCTAGTAACAACTC+AGG | + | Chr8:67804102-67804121 | MsG0880046023.01.T01:CDS | 40.0% | |
| CACATGAAGGACACATAGTA+AGG | - | Chr8:67805329-67805348 | None:intergenic | 40.0% | |
| CTGCTGAAGAATTTGTGAAG+GGG | - | Chr8:67805425-67805444 | None:intergenic | 40.0% | |
| GCTGAACCATCTTTAACGTT+GGG | + | Chr8:67804234-67804253 | MsG0880046023.01.T01:CDS | 40.0% | |
| GCTGCTGAAGAATTTGTGAA+GGG | - | Chr8:67805426-67805445 | None:intergenic | 40.0% | |
| GTACTTAAATTGCAGTACGC+AGG | - | Chr8:67804903-67804922 | None:intergenic | 40.0% | |
| TCAGGCCTTCAACTTATTCT+AGG | + | Chr8:67804120-67804139 | MsG0880046023.01.T01:CDS | 40.0% | |
| TGCTGCTGAAGAATTTGTGA+AGG | - | Chr8:67805427-67805446 | None:intergenic | 40.0% | |
| TTCATCTTTCTCTAGTGGGA+GGG | + | Chr8:67804332-67804351 | MsG0880046023.01.T01:CDS | 40.0% | |
| TTTCATCTTTCTCTAGTGGG+AGG | + | Chr8:67804331-67804350 | MsG0880046023.01.T01:CDS | 40.0% | |
| ! | AAAGGAGGTGCAAGAATTGA+AGG | + | Chr8:67805257-67805276 | MsG0880046023.01.T01:CDS | 40.0% |
| ! | AGGCTTTGTAACGTTGTTGT+TGG | - | Chr8:67804184-67804203 | None:intergenic | 40.0% |
| AGAAATGGAAACGACGGAGA+TGG | + | Chr8:67804386-67804405 | MsG0880046023.01.T01:CDS | 45.0% | |
| GAAGAAAGGTAAGGGAAGAG+TGG | - | Chr8:67803998-67804017 | None:intergenic | 45.0% | |
| GAATAGGAGGCTACAAAAGG+AGG | + | Chr8:67805242-67805261 | MsG0880046023.01.T01:CDS | 45.0% | |
| GATGAAACAACGCTGTGATG+AGG | - | Chr8:67804318-67804337 | None:intergenic | 45.0% | |
| GCTGGCATAGGCATATACAA+GGG | - | Chr8:67805300-67805319 | None:intergenic | 45.0% | |
| GTGAAGGGGTTGTAAAAGTG+AGG | - | Chr8:67805411-67805430 | None:intergenic | 45.0% | |
| TCTAACACCTCGACAAGTTG+AGG | + | Chr8:67804669-67804688 | MsG0880046023.01.T01:CDS | 45.0% | |
| TGCTGGCATAGGCATATACA+AGG | - | Chr8:67805301-67805320 | None:intergenic | 45.0% | |
| TGTCCTTCATGTGAGAGACT+AGG | + | Chr8:67805336-67805355 | MsG0880046023.01.T01:CDS | 45.0% | |
| ! | GTAACGTTGTTGTTGGATGG+TGG | - | Chr8:67804177-67804196 | None:intergenic | 45.0% |
| !! | TGTATAGGTACCTGGCTCTA+CGG | - | Chr8:67804708-67804727 | None:intergenic | 45.0% |
| AACCAGACCTCAACTTGTCG+AGG | - | Chr8:67804679-67804698 | None:intergenic | 50.0% | |
| AAGCTTCTTCCTAGCTGCAG+TGG | - | Chr8:67804454-67804473 | None:intergenic | 50.0% | |
| CACATAGTAAGGGTAGCTGC+TGG | - | Chr8:67805318-67805337 | None:intergenic | 50.0% | |
| CCACCTAGTCTCTCACATGA+AGG | - | Chr8:67805342-67805361 | None:intergenic | 50.0% | |
| CCTTCATGTGAGAGACTAGG+TGG | + | Chr8:67805339-67805358 | MsG0880046023.01.T01:CDS | 50.0% | |
| TCATGTGAGAGACTAGGTGG+TGG | + | Chr8:67805342-67805361 | MsG0880046023.01.T01:CDS | 50.0% | |
| ! | GGATGGTGGTGTGTCTTGTT+TGG | - | Chr8:67804163-67804182 | None:intergenic | 50.0% |
| !! | CTAGGTGGTGGTGGTGTTAA+TGG | + | Chr8:67805354-67805373 | MsG0880046023.01.T01:CDS | 50.0% |
| GTAAGGGTAGCTGCTGGCAT+AGG | - | Chr8:67805312-67805331 | None:intergenic | 55.0% | |
| ! | CACCTCGACAAGTTGAGGTC+TGG | + | Chr8:67804674-67804693 | MsG0880046023.01.T01:CDS | 55.0% |
| ! | TGTGAGAGACTAGGTGGTGG+TGG | + | Chr8:67805345-67805364 | MsG0880046023.01.T01:CDS | 55.0% |
| !! | GGTGGTGGTGGTGTTAATGG+TGG | + | Chr8:67805357-67805376 | MsG0880046023.01.T01:CDS | 55.0% |
| GGTTCCAGAACCGTAGAGCC+AGG | + | Chr8:67804695-67804714 | MsG0880046023.01.T01:CDS | 60.0% | |
| !! | AAGACGGTGCCACTGCAGCT+AGG | + | Chr8:67804442-67804461 | MsG0880046023.01.T01:CDS | 60.0% |
| !! | GGTACCTGGCTCTACGGTTC+TGG | - | Chr8:67804702-67804721 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 67803988 | 67805460 | 67803988 | ID=MsG0880046023.01;Name=MsG0880046023.01 |
| Chr8 | mRNA | 67803988 | 67805460 | 67803988 | ID=MsG0880046023.01.T01;Parent=MsG0880046023.01;Name=MsG0880046023.01.T01;_AED=0.46;_eAED=0.46;_QI=99|1|1|1|1|1|3|8|270 |
| Chr8 | exon | 67803988 | 67804539 | 67803988 | ID=MsG0880046023.01.T01:exon:15635;Parent=MsG0880046023.01.T01 |
| Chr8 | exon | 67804637 | 67804716 | 67804637 | ID=MsG0880046023.01.T01:exon:15636;Parent=MsG0880046023.01.T01 |
| Chr8 | exon | 67805173 | 67805460 | 67805173 | ID=MsG0880046023.01.T01:exon:15637;Parent=MsG0880046023.01.T01 |
| Chr8 | five_prime_UTR | 67803988 | 67804086 | 67803988 | ID=MsG0880046023.01.T01:five_prime_utr;Parent=MsG0880046023.01.T01 |
| Chr8 | CDS | 67804087 | 67804539 | 67804087 | ID=MsG0880046023.01.T01:cds;Parent=MsG0880046023.01.T01 |
| Chr8 | CDS | 67804637 | 67804716 | 67804637 | ID=MsG0880046023.01.T01:cds;Parent=MsG0880046023.01.T01 |
| Chr8 | CDS | 67805173 | 67805452 | 67805173 | ID=MsG0880046023.01.T01:cds;Parent=MsG0880046023.01.T01 |
| Chr8 | three_prime_UTR | 67805453 | 67805460 | 67805453 | ID=MsG0880046023.01.T01:three_prime_utr;Parent=MsG0880046023.01.T01 |
| Gene Sequence |
| Protein sequence |
