Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027923.01.T01 | XP_003615222.1 | 94.845 | 194 | 3 | 2 | 1 | 193 | 1 | 188 | 1.10E-127 | 367 |
| MsG0580027923.01.T02 | XP_004490405.1 | 87.179 | 78 | 8 | 2 | 1 | 78 | 115 | 190 | 7.76E-36 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027923.01.T01 | G7KBE5 | 94.845 | 194 | 3 | 2 | 1 | 193 | 1 | 188 | 5.27e-128 | 367 |
| MsG0580027923.01.T02 | A0A1S2XLB3 | 87.179 | 78 | 8 | 2 | 1 | 78 | 115 | 190 | 3.71e-36 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048532.01 | MsG0580027923.01 | -0.822087 | 2.858091e-53 | 2.368229e-50 |
| MsG0180000151.01 | MsG0580027923.01 | 0.803822 | 2.901800e-49 | 1.472694e-46 |
| MsG0180001122.01 | MsG0580027923.01 | 0.811693 | 6.160914e-51 | 3.839203e-48 |
| MsG0180004085.01 | MsG0580027923.01 | 0.803057 | 4.179286e-49 | 2.079670e-46 |
| MsG0180005354.01 | MsG0580027923.01 | 0.822473 | 2.324553e-53 | 1.947668e-50 |
| MsG0280011330.01 | MsG0580027923.01 | 0.841780 | 3.861517e-58 | 5.734469e-55 |
| MsG0380012085.01 | MsG0580027923.01 | 0.805328 | 1.407480e-49 | 7.425346e-47 |
| MsG0380012091.01 | MsG0580027923.01 | 0.801848 | 7.417499e-49 | 3.579344e-46 |
| MsG0380012184.01 | MsG0580027923.01 | 0.815840 | 7.520215e-52 | 5.242059e-49 |
| MsG0380012249.01 | MsG0580027923.01 | 0.821642 | 3.622214e-53 | 2.963738e-50 |
| MsG0380012319.01 | MsG0580027923.01 | 0.816282 | 5.992962e-52 | 4.228680e-49 |
| MsG0380012331.01 | MsG0580027923.01 | 0.841420 | 4.802967e-58 | 7.053889e-55 |
| MsG0380012362.01 | MsG0580027923.01 | 0.804123 | 2.512927e-49 | 1.285221e-46 |
| MsG0380012365.01 | MsG0580027923.01 | 0.813408 | 2.598489e-51 | 1.695606e-48 |
| MsG0380014333.01 | MsG0580027923.01 | 0.813081 | 3.065139e-51 | 1.982228e-48 |
| MsG0380014866.01 | MsG0580027923.01 | 0.811545 | 6.636235e-51 | 4.119538e-48 |
| MsG0480019335.01 | MsG0580027923.01 | 0.821986 | 3.015952e-53 | 2.491881e-50 |
| MsG0480020992.01 | MsG0580027923.01 | 0.811510 | 6.754372e-51 | 4.189071e-48 |
| MsG0480021900.01 | MsG0580027923.01 | 0.810551 | 1.089543e-50 | 6.587273e-48 |
| MsG0480021998.01 | MsG0580027923.01 | 0.801241 | 9.880435e-49 | 4.695273e-46 |
| MsG0480022105.01 | MsG0580027923.01 | 0.827296 | 1.692190e-54 | 1.626974e-51 |
| MsG0480022406.01 | MsG0580027923.01 | 0.824389 | 8.289167e-54 | 7.331452e-51 |
| MsG0480022451.01 | MsG0580027923.01 | 0.820963 | 5.194560e-53 | 4.171047e-50 |
| MsG0480023099.01 | MsG0580027923.01 | 0.824637 | 7.245158e-54 | 6.455316e-51 |
| MsG0480023251.01 | MsG0580027923.01 | 0.812977 | 3.231256e-51 | 2.083820e-48 |
| MsG0480023670.01 | MsG0580027923.01 | 0.831429 | 1.677558e-55 | 1.819893e-52 |
| MsG0480023937.01 | MsG0580027923.01 | 0.868522 | 6.136389e-66 | 2.226585e-62 |
| MsG0580024596.01 | MsG0580027923.01 | 0.845014 | 5.287018e-59 | 8.692181e-56 |
| MsG0580024853.01 | MsG0580027923.01 | 0.806104 | 9.672214e-50 | 5.205311e-47 |
| MsG0580024975.01 | MsG0580027923.01 | 0.833850 | 4.208745e-56 | 4.907510e-53 |
| MsG0580025206.01 | MsG0580027923.01 | 0.829483 | 5.019118e-55 | 5.143575e-52 |
| MsG0580025850.01 | MsG0580027923.01 | 0.810968 | 8.852536e-51 | 5.412681e-48 |
| MsG0580026067.01 | MsG0580027923.01 | 0.831328 | 1.776106e-55 | 1.921078e-52 |
| MsG0380015215.01 | MsG0580027923.01 | -0.836313 | 1.006599e-56 | 1.263994e-53 |
| MsG0380015374.01 | MsG0580027923.01 | 0.844280 | 8.335715e-59 | 1.339069e-55 |
| MsG0380015735.01 | MsG0580027923.01 | 0.815684 | 8.151213e-52 | 5.657973e-49 |
| MsG0380015804.01 | MsG0580027923.01 | 0.815122 | 1.086847e-51 | 7.428260e-49 |
| MsG0380015810.01 | MsG0580027923.01 | 0.825132 | 5.538368e-54 | 5.004559e-51 |
| MsG0380016566.01 | MsG0580027923.01 | 0.806414 | 8.322605e-50 | 4.514402e-47 |
| MsG0380017055.01 | MsG0580027923.01 | 0.825386 | 4.821276e-54 | 4.387856e-51 |
| MsG0580027923.01 | MsG0580028459.01 | 0.813700 | 2.241522e-51 | 1.474269e-48 |
| MsG0580027923.01 | MsG0580029195.01 | 0.831583 | 1.537283e-55 | 1.675587e-52 |
| MsG0580027923.01 | MsG0680030558.01 | 0.860267 | 2.326764e-63 | 6.322564e-60 |
| MsG0580027923.01 | MsG0680030677.01 | 0.800105 | 1.684664e-48 | 7.778164e-46 |
| MsG0580027923.01 | MsG0680032831.01 | 0.804968 | 1.674297e-49 | 8.751864e-47 |
| MsG0580027923.01 | MsG0680033465.01 | 0.808422 | 3.121402e-50 | 1.784042e-47 |
| MsG0580027923.01 | MsG0680034597.01 | 0.833997 | 3.865591e-56 | 4.527278e-53 |
| MsG0580027923.01 | MsG0680034914.01 | 0.801231 | 9.925839e-49 | 4.715577e-46 |
| MsG0580027923.01 | MsG0680035005.01 | 0.801678 | 8.039335e-49 | 3.862495e-46 |
| MsG0580027923.01 | MsG0780038092.01 | 0.803667 | 3.124845e-49 | 1.579517e-46 |
| MsG0580027923.01 | MsG0780038644.01 | 0.836949 | 6.930886e-57 | 8.870152e-54 |
| MsG0580027923.01 | MsG0780039218.01 | 0.818929 | 1.516768e-52 | 1.151005e-49 |
| MsG0580027923.01 | MsG0780039573.01 | 0.822741 | 2.013834e-53 | 1.700283e-50 |
| MsG0580027923.01 | MsG0780039711.01 | 0.801668 | 8.076511e-49 | 3.879476e-46 |
| MsG0580027923.01 | MsG0780039870.01 | 0.823568 | 1.291776e-53 | 1.116313e-50 |
| MsG0580027923.01 | MsG0780040176.01 | 0.819173 | 1.334279e-52 | 1.019221e-49 |
| MsG0580027923.01 | MsG0780040591.01 | 0.800978 | 1.118354e-48 | 5.279532e-46 |
| MsG0580027923.01 | MsG0780041753.01 | 0.821894 | 3.167503e-53 | 2.610431e-50 |
| MsG0580027923.01 | MsG0880042560.01 | 0.804648 | 1.952930e-49 | 1.012416e-46 |
| MsG0580027923.01 | MsG0880044705.01 | 0.815013 | 1.149157e-51 | 7.831420e-49 |
| MsG0580027923.01 | MsG0880044732.01 | 0.801260 | 9.791269e-49 | 4.655045e-46 |
| MsG0580027923.01 | MsG0880045544.01 | 0.818999 | 1.461607e-52 | 1.111291e-49 |
| MsG0580027923.01 | MsG0880045756.01 | 0.804371 | 2.230747e-49 | 1.148207e-46 |
| MsG0580027923.01 | MsG0880046023.01 | 0.867962 | 9.291302e-66 | 3.303980e-62 |
| MsG0580027923.01 | MsG0880046560.01 | 0.816935 | 4.277722e-52 | 3.072829e-49 |
| MsG0580027923.01 | MsG0880046890.01 | 0.814700 | 1.348150e-51 | 9.110113e-49 |
| MsG0580027923.01 | MsG0880047285.01 | -0.868197 | 7.810935e-66 | 2.801152e-62 |
| MsG0580027923.01 | MsG0880047558.01 | 0.805950 | 1.041958e-49 | 5.585608e-47 |
| MsG0280007537.01 | MsG0580027923.01 | 0.853398 | 2.453669e-61 | 5.294626e-58 |
| MsG0280007691.01 | MsG0580027923.01 | 0.807785 | 4.264926e-50 | 2.397044e-47 |
| MsG0280009551.01 | MsG0580027923.01 | 0.800806 | 1.212757e-48 | 5.699692e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027923.01.T01 | MTR_5g065350 | 94.845 | 194 | 3 | 2 | 1 | 193 | 1 | 188 | 1.34e-131 | 367 |
| MsG0580027923.01.T01 | MTR_7g445390 | 45.455 | 66 | 34 | 1 | 14 | 79 | 5 | 68 | 4.49e-13 | 63.5 |
| MsG0580027923.01.T01 | MTR_8g005880 | 43.860 | 57 | 32 | 0 | 17 | 73 | 8 | 64 | 2.93e-12 | 60.8 |
| MsG0580027923.01.T02 | MTR_5g065350 | 96.970 | 66 | 1 | 1 | 14 | 78 | 123 | 188 | 1.45e-36 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027923.01.T01 | AT1G02070 | 50.943 | 53 | 17 | 2 | 17 | 64 | 5 | 53 | 4.59e-11 | 58.5 |
Find 39 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTTCTGATGGTGATTT+TGG | 0.180402 | 5:-71110223 | None:intergenic |
| TTTGGTTTCTTCATTGGTTT+TGG | 0.200009 | 5:-71110205 | None:intergenic |
| GATGAAGAATTTGAAGAGTT+TGG | 0.223033 | 5:-71110070 | None:intergenic |
| TACTATATATTAAAATAAAA+AGG | 0.269571 | 5:-71110506 | None:intergenic |
| TTGCACGTTAAAATGACATT+AGG | 0.278421 | 5:-71110614 | None:intergenic |
| ACCTGTGTTGAGATCGGATT+TGG | 0.307776 | 5:-71109597 | None:intergenic |
| TTTGTTATGTACATTGCATT+AGG | 0.324813 | 5:-71110549 | None:intergenic |
| CTTATTCCTGAAAACTTGTT+TGG | 0.327849 | 5:-71110389 | None:intergenic |
| ACAACTTAATGAAGTATGTT+TGG | 0.352183 | 5:+71110766 | MsG0580027923.01.T01:three_prime_UTR |
| CGAGTTGAAACTAAAATAGA+TGG | 0.362041 | 5:-71110271 | None:intergenic |
| TGCACGTTAAAATGACATTA+GGG | 0.362405 | 5:-71110613 | None:intergenic |
| CATATGCAACACTCTGTCTT+TGG | 0.372972 | 5:-71109529 | None:intergenic |
| AAAAGTAGTAGTAATAATAT+TGG | 0.382026 | 5:+71110361 | MsG0580027923.01.T01:CDS |
| AATCATCACAAACGGTGCTT+TGG | 0.403206 | 5:+71110300 | MsG0580027923.01.T01:CDS |
| TGTTGCATATGTGGGGATCT+TGG | 0.434290 | 5:+71109541 | MsG0580027923.01.T01:CDS |
| AAGACAGAGTGTTGCATATG+TGG | 0.477772 | 5:+71109532 | MsG0580027923.01.T01:CDS |
| CTTAATGAAGTATGTTTGGA+TGG | 0.501678 | 5:+71110770 | MsG0580027923.01.T01:three_prime_UTR |
| AACTATTAGGACTGAATTGA+CGG | 0.501795 | 5:+71110733 | MsG0580027923.01.T01:three_prime_UTR |
| CGCAAAAGAATCATCACAAA+CGG | 0.503705 | 5:+71110292 | MsG0580027923.01.T01:CDS |
| CAGAAGAAAGGAGTAATCAA+AGG | 0.511163 | 5:+71110157 | MsG0580027923.01.T01:CDS |
| TTAAATACCTGTGTTGAGAT+CGG | 0.514874 | 5:-71109603 | None:intergenic |
| GCAACAAGGAAAATTAGAAT+CGG | 0.525386 | 5:+71110633 | MsG0580027923.01.T01:three_prime_UTR |
| GGAGATGTTGATGATGCTAT+TGG | 0.539445 | 5:-71110250 | None:intergenic |
| AAAGGAGTAATCAAAGGAAG+TGG | 0.542816 | 5:+71110163 | MsG0580027923.01.T01:CDS |
| TTTGGGTGGAAGAGAAGAGA+CGG | 0.548215 | 5:+71110905 | MsG0580027923.01.T01:three_prime_UTR |
| TTGAAGATAGATGAAGAACT+AGG | 0.558656 | 5:-71109412 | None:intergenic |
| AATGAAAGCACAGAAGATGA+AGG | 0.559578 | 5:+71110106 | MsG0580027923.01.T01:CDS |
| AGACAGAGTGTTGCATATGT+GGG | 0.559651 | 5:+71109533 | MsG0580027923.01.T01:CDS |
| AGTCTATATCTTGTTTAACT+CGG | 0.560190 | 5:+71109335 | MsG0580027923.01.T01:five_prime_UTR |
| TTGAGTACTCAATGAGGTTG+TGG | 0.572693 | 5:+71110665 | MsG0580027923.01.T01:three_prime_UTR |
| CAGCAAAACATGACAAGCAA+AGG | 0.581246 | 5:+71109484 | MsG0580027923.01.T01:exon |
| GATAGATGAAGAACTAGGAG+AGG | 0.593712 | 5:-71109407 | None:intergenic |
| GTGCTTTGGAAGAGAAGTTG+AGG | 0.598720 | 5:+71110314 | MsG0580027923.01.T01:CDS |
| ACTTCACAAACACGGTGACA+CGG | 0.600656 | 5:+71109303 | None:intergenic |
| GCCAAATCCGATCTCAACAC+AGG | 0.610494 | 5:+71109596 | MsG0580027923.01.T01:CDS |
| GTACTCAATGAGGTTGTGGT+AGG | 0.617424 | 5:+71110669 | MsG0580027923.01.T01:three_prime_UTR |
| GACAGAGTGTTGCATATGTG+GGG | 0.645405 | 5:+71109534 | MsG0580027923.01.T01:CDS |
| TTGGTGTTTGAGTCAGAACG+AGG | 0.661090 | 5:+71110042 | MsG0580027923.01.T01:CDS |
| TGTTGATTGAGTACTCAATG+AGG | 0.683702 | 5:+71110659 | MsG0580027923.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTATAAAAAGTTTATTT+GGG | + | Chr5:71110853-71110872 | MsG0580027923.01.T01:three_prime_UTR | 10.0% |
| !! | TTCATTAAAAAAAAGATTAA+GGG | - | Chr5:71109649-71109668 | None:intergenic | 10.0% |
| !! | TTTCATTAAAAAAAAGATTA+AGG | - | Chr5:71109650-71109669 | None:intergenic | 10.0% |
| !!! | TAATATATAGTATTTTGTTT+TGG | + | Chr5:71110517-71110536 | MsG0580027923.01.T01:three_prime_UTR | 10.0% |
| !! | AAAAGTAGTAGTAATAATAT+TGG | + | Chr5:71110361-71110380 | MsG0580027923.01.T01:CDS | 15.0% |
| !! | AAACAAAAAAAGAAAAGAAA+AGG | + | Chr5:71110474-71110493 | MsG0580027923.01.T01:three_prime_UTR | 15.0% |
| !! | AACAAAAAAAGAAAAGAAAA+GGG | + | Chr5:71110475-71110494 | MsG0580027923.01.T01:three_prime_UTR | 15.0% |
| !! | CGAATTATAAAAAGTTTATT+TGG | + | Chr5:71110852-71110871 | MsG0580027923.01.T01:three_prime_UTR | 15.0% |
| !!! | ATTGTTATAAATATTTTGTG+TGG | + | Chr5:71110710-71110729 | MsG0580027923.01.T01:three_prime_UTR | 15.0% |
| !!! | TTTTGTTATTTAATTTGTTG+TGG | + | Chr5:71109929-71109948 | MsG0580027923.01.T01:intron | 15.0% |
| !! | TTATAAAAAGTTTATTTGGG+TGG | + | Chr5:71110891-71110910 | MsG0580027923.01.T01:three_prime_UTR | 20.0% |
| !! | TTATATATACATCTTTAGTG+AGG | + | Chr5:71109856-71109875 | MsG0580027923.01.T01:intron | 20.0% |
| !!! | AAAAATTGTTTTCAGAAGAA+AGG | + | Chr5:71110145-71110164 | MsG0580027923.01.T01:CDS | 20.0% |
| !!! | AATTTTTTGGAACATGTAAT+TGG | + | Chr5:71110023-71110042 | MsG0580027923.01.T01:CDS | 20.0% |
| !!! | GTATACATATTCAAATTTTG+TGG | + | Chr5:71110961-71110980 | MsG0580027923.01.T01:three_prime_UTR | 20.0% |
| !!! | TATTTTTGTAAGGAAATTGA+AGG | + | Chr5:71109820-71109839 | MsG0580027923.01.T01:intron | 20.0% |
| ! | ACAACTTAATGAAGTATGTT+TGG | + | Chr5:71110766-71110785 | MsG0580027923.01.T01:three_prime_UTR | 25.0% |
| ! | CTAATGACCACAAATAAAAA+AGG | - | Chr5:71109387-71109406 | None:intergenic | 25.0% |
| !! | AGTCTATATCTTGTTTAACT+CGG | + | Chr5:71109335-71109354 | MsG0580027923.01.T01:five_prime_UTR | 25.0% |
| !! | ATATTTTGTGTGGAACTATT+AGG | + | Chr5:71110720-71110739 | MsG0580027923.01.T01:three_prime_UTR | 25.0% |
| !! | TACCTACAAAATTTTCATGA+AGG | - | Chr5:71109977-71109996 | None:intergenic | 25.0% |
| !! | TTTGTTATGTACATTGCATT+AGG | - | Chr5:71110552-71110571 | None:intergenic | 25.0% |
| !!! | ATTTAATTTGTTGTGGTCTT+TGG | + | Chr5:71109936-71109955 | MsG0580027923.01.T01:intron | 25.0% |
| !!! | CTCTTTACCTTTTTTATTTG+TGG | + | Chr5:71109377-71109396 | MsG0580027923.01.T01:five_prime_UTR | 25.0% |
| !!! | TATCCAACAACAGAATTTTT+TGG | + | Chr5:71110010-71110029 | MsG0580027923.01.T01:CDS | 25.0% |
| !!! | TGTATCTATTTTTCATTGAG+AGG | - | Chr5:71109466-71109485 | None:intergenic | 25.0% |
| AACTATTAGGACTGAATTGA+CGG | + | Chr5:71110733-71110752 | MsG0580027923.01.T01:three_prime_UTR | 30.0% | |
| CTTAATGAAGTATGTTTGGA+TGG | + | Chr5:71110770-71110789 | MsG0580027923.01.T01:three_prime_UTR | 30.0% | |
| GATGAAGAATTTGAAGAGTT+TGG | - | Chr5:71110073-71110092 | None:intergenic | 30.0% | |
| GCAACAAGGAAAATTAGAAT+CGG | + | Chr5:71110633-71110652 | MsG0580027923.01.T01:three_prime_UTR | 30.0% | |
| GTTCCAAAAAATTCTGTTGT+TGG | - | Chr5:71110016-71110035 | None:intergenic | 30.0% | |
| TGCACGTTAAAATGACATTA+GGG | - | Chr5:71110616-71110635 | None:intergenic | 30.0% | |
| TTAAATACCTGTGTTGAGAT+CGG | - | Chr5:71109606-71109625 | None:intergenic | 30.0% | |
| TTGAAGATAGATGAAGAACT+AGG | - | Chr5:71109415-71109434 | None:intergenic | 30.0% | |
| TTGCACGTTAAAATGACATT+AGG | - | Chr5:71110617-71110636 | None:intergenic | 30.0% | |
| ! | AGATTTTGCATAGAAAAAGC+TGG | - | Chr5:71109576-71109595 | None:intergenic | 30.0% |
| ! | CGAGTTGAAACTAAAATAGA+TGG | - | Chr5:71110274-71110293 | None:intergenic | 30.0% |
| ! | CTCCTTCATGAAAATTTTGT+AGG | + | Chr5:71109972-71109991 | MsG0580027923.01.T01:intron | 30.0% |
| ! | CTTATTCCTGAAAACTTGTT+TGG | - | Chr5:71110392-71110411 | None:intergenic | 30.0% |
| !! | CAAACAAGTTTTCAGGAATA+AGG | + | Chr5:71110390-71110409 | MsG0580027923.01.T01:CDS | 30.0% |
| !! | TTTTCAGGAATAAGGTAAGA+AGG | + | Chr5:71110398-71110417 | MsG0580027923.01.T01:CDS | 30.0% |
| !!! | GAGCTACATATAGTTTTGAA+AGG | + | Chr5:71109763-71109782 | MsG0580027923.01.T01:intron | 30.0% |
| !!! | TTTGGTTTCTTCATTGGTTT+TGG | - | Chr5:71110208-71110227 | None:intergenic | 30.0% |
| AAAGGAGTAATCAAAGGAAG+TGG | + | Chr5:71110163-71110182 | MsG0580027923.01.T01:CDS | 35.0% | |
| CAGAAGAAAGGAGTAATCAA+AGG | + | Chr5:71110157-71110176 | MsG0580027923.01.T01:CDS | 35.0% | |
| CGCAAAAGAATCATCACAAA+CGG | + | Chr5:71110292-71110311 | MsG0580027923.01.T01:CDS | 35.0% | |
| GTTTGGATGGAAGAGAAAAA+AGG | + | Chr5:71110783-71110802 | MsG0580027923.01.T01:three_prime_UTR | 35.0% | |
| ! | AATGAAAGCACAGAAGATGA+AGG | + | Chr5:71110106-71110125 | MsG0580027923.01.T01:CDS | 35.0% |
| ! | ATTTTTCATTGAGAGGAGAG+AGG | - | Chr5:71109459-71109478 | None:intergenic | 35.0% |
| ! | TGTTGATTGAGTACTCAATG+AGG | + | Chr5:71110659-71110678 | MsG0580027923.01.T01:three_prime_UTR | 35.0% |
| ! | TTTTTCATTGAGAGGAGAGA+GGG | - | Chr5:71109458-71109477 | None:intergenic | 35.0% |
| !! | ATTGGTGATTTTGCTTCTGA+TGG | - | Chr5:71110235-71110254 | None:intergenic | 35.0% |
| !! | TTTGCTTCTGATGGTGATTT+TGG | - | Chr5:71110226-71110245 | None:intergenic | 35.0% |
| !!! | ACTCGGTTTAGTCTTTTTTG+TGG | + | Chr5:71109352-71109371 | MsG0580027923.01.T01:five_prime_UTR | 35.0% |
| !!! | CTCGGTTTAGTCTTTTTTGT+GGG | + | Chr5:71109353-71109372 | MsG0580027923.01.T01:five_prime_UTR | 35.0% |
| !!! | GGTGATTTTGGTTTCTTCAT+TGG | - | Chr5:71110214-71110233 | None:intergenic | 35.0% |
| !!! | TGTCATTTTAACGTGCAACA+AGG | + | Chr5:71110619-71110638 | MsG0580027923.01.T01:three_prime_UTR | 35.0% |
| AATCATCACAAACGGTGCTT+TGG | + | Chr5:71110300-71110319 | MsG0580027923.01.T01:CDS | 40.0% | |
| CAGCAAAACATGACAAGCAA+AGG | + | Chr5:71109484-71109503 | MsG0580027923.01.T01:exon | 40.0% | |
| CATATGCAACACTCTGTCTT+TGG | - | Chr5:71109532-71109551 | None:intergenic | 40.0% | |
| GATAGATGAAGAACTAGGAG+AGG | - | Chr5:71109410-71109429 | None:intergenic | 40.0% | |
| TTGAGTACTCAATGAGGTTG+TGG | + | Chr5:71110665-71110684 | MsG0580027923.01.T01:three_prime_UTR | 40.0% | |
| ! | GTGTGACCAAACAAGTTTTC+AGG | + | Chr5:71110383-71110402 | MsG0580027923.01.T01:CDS | 40.0% |
| !! | AAGACAGAGTGTTGCATATG+TGG | + | Chr5:71109532-71109551 | MsG0580027923.01.T01:CDS | 40.0% |
| !! | AGACAGAGTGTTGCATATGT+GGG | + | Chr5:71109533-71109552 | MsG0580027923.01.T01:CDS | 40.0% |
| !! | GGAGATGTTGATGATGCTAT+TGG | - | Chr5:71110253-71110272 | None:intergenic | 40.0% |
| ACCTGTGTTGAGATCGGATT+TGG | - | Chr5:71109600-71109619 | None:intergenic | 45.0% | |
| GTACTCAATGAGGTTGTGGT+AGG | + | Chr5:71110669-71110688 | MsG0580027923.01.T01:three_prime_UTR | 45.0% | |
| TGTTGCATATGTGGGGATCT+TGG | + | Chr5:71109541-71109560 | MsG0580027923.01.T01:CDS | 45.0% | |
| TTTGGGTGGAAGAGAAGAGA+CGG | + | Chr5:71110905-71110924 | MsG0580027923.01.T01:three_prime_UTR | 45.0% | |
| ! | TTGGTGTTTGAGTCAGAACG+AGG | + | Chr5:71110042-71110061 | MsG0580027923.01.T01:CDS | 45.0% |
| !! | GACAGAGTGTTGCATATGTG+GGG | + | Chr5:71109534-71109553 | MsG0580027923.01.T01:CDS | 45.0% |
| !! | GTGCTTTGGAAGAGAAGTTG+AGG | + | Chr5:71110314-71110333 | MsG0580027923.01.T01:CDS | 45.0% |
| !! | TACTATATATTAAAATAAAA+AGG | - | Chr5:71110509-71110528 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATATTTTTGTA+AGG | + | Chr5:71109810-71109829 | MsG0580027923.01.T01:intron | 5.0% |
| GCCAAATCCGATCTCAACAC+AGG | + | Chr5:71109596-71109615 | MsG0580027923.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 71109314 | 71110991 | 71109314 | ID=MsG0580027923.01;Name=MsG0580027923.01 |
| Chr5 | mRNA | 71109314 | 71110991 | 71109314 | ID=MsG0580027923.01.T01;Parent=MsG0580027923.01;Name=MsG0580027923.01.T01;_AED=0.20;_eAED=0.20;_QI=179|1|1|1|0|0|2|541|193 |
| Chr5 | exon | 71109314 | 71109617 | 71109314 | ID=MsG0580027923.01.T01:exon:7100;Parent=MsG0580027923.01.T01 |
| Chr5 | exon | 71109994 | 71110991 | 71109994 | ID=MsG0580027923.01.T01:exon:7101;Parent=MsG0580027923.01.T01 |
| Chr5 | five_prime_UTR | 71109314 | 71109492 | 71109314 | ID=MsG0580027923.01.T01:five_prime_utr;Parent=MsG0580027923.01.T01 |
| Chr5 | CDS | 71109493 | 71109617 | 71109493 | ID=MsG0580027923.01.T01:cds;Parent=MsG0580027923.01.T01 |
| Chr5 | CDS | 71109994 | 71110450 | 71109994 | ID=MsG0580027923.01.T01:cds;Parent=MsG0580027923.01.T01 |
| Chr5 | three_prime_UTR | 71110451 | 71110991 | 71110451 | ID=MsG0580027923.01.T01:three_prime_utr;Parent=MsG0580027923.01.T01 |
| Chr5 | mRNA | 71110214 | 71110450 | 71110214 | ID=MsG0580027923.01.T02;Parent=MsG0580027923.01;Name=MsG0580027923.01.T02;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|0|1|0|78 |
| Chr5 | exon | 71110214 | 71110450 | 71110214 | ID=MsG0580027923.01.T02:exon:7102;Parent=MsG0580027923.01.T02 |
| Chr5 | CDS | 71110214 | 71110450 | 71110214 | ID=MsG0580027923.01.T02:cds;Parent=MsG0580027923.01.T02 |
| Gene Sequence |
| Protein sequence |
