AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0287740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287740 MtrunA17_Chr2g0331411 95.107 327 14 2 1 326 1 326 0.0 637
Msa0287740 MtrunA17_Chr8g0390281 54.438 338 97 12 1 326 1 293 4.15e-104 306
Msa0287740 MtrunA17_Chr5g0411501 49.304 359 110 10 1 326 16 335 1.72e-103 306
Msa0287740 MtrunA17_Chr8g0366881 50.737 339 120 9 6 326 39 348 2.15e-101 301
Msa0287740 MtrunA17_Chr6g0486121 53.398 309 78 9 20 326 10 254 1.15e-91 273
Msa0287740 MtrunA17_Chr5g0428141 49.425 348 124 13 2 326 29 347 7.33e-90 272
Msa0287740 MtrunA17_Chr1g0190711 44.156 308 101 8 23 326 13 253 1.80e-65 206
Msa0287740 MtrunA17_Chr1g0184791 64.024 164 53 3 167 326 84 245 1.80e-65 206
Msa0287740 MtrunA17_Chr7g0260641 62.733 161 55 3 167 326 94 250 1.56e-64 204
Msa0287740 MtrunA17_Chr1g0187921 62.112 161 58 2 167 326 78 236 1.73e-63 201
Msa0287740 MtrunA17_Chr1g0166011 49.741 193 64 6 128 314 17 182 6.56e-51 167
Msa0287740 MtrunA17_Chr1g0184801 44.248 226 100 5 90 314 1 201 6.70e-50 165
Msa0287740 MtrunA17_Chr7g0260621 49.143 175 63 4 143 315 52 202 6.06e-47 157
Msa0287740 MtrunA17_Chr1g0187961 54.362 149 41 5 166 314 57 178 9.38e-46 153
Msa0287740 MtrunA17_Chr1g0183251 44.149 188 71 6 171 325 81 267 4.44e-36 131
Msa0287740 MtrunA17_Chr4g0004181 49.669 151 44 5 170 318 52 172 5.88e-32 117
Msa0287740 MtrunA17_Chr2g0330951 40.113 177 86 4 154 310 78 254 2.26e-31 119
Msa0287740 MtrunA17_Chr2g0332141 48.000 125 52 4 206 326 6 121 1.08e-30 112
Msa0287740 MtrunA17_Chr8g0340731 41.401 157 77 3 169 310 104 260 2.80e-29 113
Msa0287740 MtrunA17_Chr4g0069561 34.899 149 64 7 166 308 60 181 1.39e-17 79.3
Msa0287740 MtrunA17_Chr3g0137601 30.323 155 77 6 163 310 79 209 1.04e-16 77.8
Msa0287740 MtrunA17_Chr7g0270851 39.423 104 49 3 204 307 66 155 2.94e-15 72.4
Msa0287740 MtrunA17_Chr1g0193861 39.216 102 48 2 206 307 83 170 3.39e-15 72.4
Msa0287740 MtrunA17_Chr1g0209181 30.137 146 80 4 163 307 44 168 5.78e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287740 AT4G29080.1 53.043 345 101 12 1 326 3 305 1.03e-100 299
Msa0287740 AT2G22670.3 49.245 331 124 6 6 325 21 318 1.27e-98 294
Msa0287740 AT2G22670.1 49.245 331 124 6 6 325 21 318 1.27e-98 294
Msa0287740 AT2G22670.4 49.245 331 124 6 6 325 38 335 1.88e-98 294
Msa0287740 AT2G22670.5 48.640 331 124 7 6 325 21 316 2.90e-95 285
Msa0287740 AT2G22670.2 48.640 331 124 7 6 325 21 316 2.90e-95 285
Msa0287740 AT5G65670.2 48.193 332 127 9 6 323 33 333 3.66e-90 273
Msa0287740 AT5G65670.1 47.904 334 127 10 6 323 33 335 2.69e-88 268
Msa0287740 AT4G14550.1 42.951 305 94 6 25 326 1 228 3.32e-68 213
Msa0287740 AT3G04730.1 50.877 228 90 4 115 326 15 236 7.17e-66 207
Msa0287740 AT4G14550.2 42.662 293 88 6 25 314 1 216 2.73e-63 201
Msa0287740 AT3G23050.1 41.311 305 98 7 25 321 6 237 6.17e-61 195
Msa0287740 AT1G04250.1 51.232 203 86 5 127 325 35 228 2.48e-58 188
Msa0287740 AT4G14550.3 39.706 272 84 6 25 293 1 195 5.31e-50 165
Msa0287740 AT1G04240.1 56.000 150 45 4 166 315 58 186 5.25e-48 160
Msa0287740 AT5G43700.1 51.136 176 60 6 140 315 33 182 2.07e-47 158
Msa0287740 AT1G04240.2 56.000 150 45 4 165 314 157 285 3.60e-47 161
Msa0287740 AT3G23030.1 49.162 179 56 5 139 314 24 170 1.26e-44 150
Msa0287740 AT3G23030.2 49.162 179 56 5 139 314 111 257 7.09e-44 151
Msa0287740 AT3G23050.2 37.545 277 92 7 25 293 6 209 2.96e-43 148
Msa0287740 AT4G14560.1 54.545 154 40 3 158 311 41 164 1.50e-40 140
Msa0287740 AT1G52830.1 44.785 163 62 4 152 314 50 184 3.92e-40 139
Msa0287740 AT3G15540.1 49.390 164 56 6 159 319 56 195 6.56e-39 136
Msa0287740 AT4G28640.1 44.571 175 77 5 157 315 72 242 6.07e-36 130
Msa0287740 AT4G28640.3 44.509 173 76 5 157 313 72 240 7.95e-36 130
Msa0287740 AT4G28640.2 44.509 173 76 5 157 313 72 240 6.34e-35 129
Msa0287740 AT2G33310.2 39.894 188 88 2 149 317 53 234 6.46e-35 127
Msa0287740 AT2G33310.3 40.761 184 83 3 154 317 56 233 8.91e-35 127
Msa0287740 AT2G33310.1 40.761 184 83 3 154 317 56 233 8.91e-35 127
Msa0287740 AT1G15580.1 46.528 144 44 3 167 309 48 159 3.06e-34 123
Msa0287740 AT1G04550.2 39.683 189 83 3 160 326 57 236 8.59e-34 124
Msa0287740 AT3G16500.2 37.198 207 104 5 126 310 50 252 1.10e-31 119
Msa0287740 AT3G16500.1 37.198 207 104 5 126 310 50 252 1.13e-31 120
Msa0287740 AT4G14550.4 35.841 226 67 5 25 247 1 151 3.57e-29 110
Msa0287740 AT5G25890.1 41.060 151 66 4 171 321 47 174 4.21e-29 110
Msa0287740 AT1G51950.1 38.012 171 82 3 160 310 84 250 4.29e-28 110
Msa0287740 AT1G04100.1 38.922 167 74 4 174 314 95 259 5.42e-28 110
Msa0287740 AT3G23050.3 32.900 231 76 6 25 247 6 165 4.57e-24 97.1
Msa0287740 AT3G17600.1 37.241 145 63 6 164 307 37 154 6.23e-21 88.2
Msa0287740 AT3G62100.1 42.574 101 43 2 207 307 83 168 2.68e-18 81.3
Msa0287740 AT2G46990.1 41.584 101 44 2 207 307 85 170 8.38e-18 80.1
Msa0287740 AT4G32280.2 35.644 101 45 2 207 307 118 198 2.10e-14 71.6
Msa0287740 AT4G32280.1 28.571 168 69 4 171 307 93 240 3.36e-14 71.6
Msa0287740 AT3G62100.2 41.379 87 36 2 207 293 83 154 1.72e-13 67.8
Msa0287740 AT2G46990.2 41.379 87 36 2 207 293 85 156 1.98e-13 67.4
Msa0287740 AT1G15050.2 36.190 105 51 1 208 312 62 150 8.19e-12 62.8
Msa0287740 AT1G15050.1 36.190 105 51 1 208 312 94 182 1.46e-11 62.8
Msa0287740 AT2G01200.2 34.127 126 63 2 187 312 83 188 1.88e-11 62.8
Msa0287740 AT2G01200.1 34.127 126 63 2 187 312 83 188 1.88e-11 62.8

Find 94 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGGAAGTTTGAGTTTA+TGG 0.105721 2_3:-30908965 Msa0287740:three_prime_UTR
TGCAATTCTCCTGGACTTCC+TGG 0.219552 2_3:-30909777 Msa0287740:CDS
TTTGAACAATTTATGTAGTT+TGG 0.243085 2_3:-30908740 Msa0287740:three_prime_UTR
AATGTTCAAAAGAACCTTCT+TGG 0.276149 2_3:+30911378 None:intergenic
TGCTTGTAGGTGATGTTCCT+TGG 0.297899 2_3:-30909665 Msa0287740:CDS
GATGCCATTGATGAGTCTTC+TGG 0.307952 2_3:-30910930 Msa0287740:CDS
GAAAAGAATAAACAGGTTAA+TGG 0.313899 2_3:-30910738 Msa0287740:CDS
TATCAGTGAATTCTCCTCTT+TGG 0.315505 2_3:+30909004 None:intergenic
CTGTAATAGGGCACAGGTTG+TGG 0.328430 2_3:-30910283 Msa0287740:intron
GCTTGTAGGTGATGTTCCTT+GGG 0.334696 2_3:-30909664 Msa0287740:CDS
CAAGACCTACAACAACTATA+TGG 0.360524 2_3:-30910112 Msa0287740:CDS
TCACTGATATGCATATATAA+AGG 0.364308 2_3:-30908990 Msa0287740:three_prime_UTR
ATGAAAGGCTCCGAGGCAAT+TGG 0.372758 2_3:-30909361 Msa0287740:CDS
AATGTTCTTCAAATCCTTGT+TGG 0.373464 2_3:+30911016 None:intergenic
TCTTTGAGGGATCTTCTTCA+TGG 0.378941 2_3:-30909732 Msa0287740:CDS
CCTATGTAATCATGTTCTAA+TGG 0.385937 2_3:+30911182 None:intergenic
ATCTTCTTCTCTCAACTTCA+AGG 0.387877 2_3:-30911129 Msa0287740:CDS
TTTAGTTAGTAGAATTCATC+TGG 0.388369 2_3:-30908873 Msa0287740:three_prime_UTR
TTGTGCACCTTTGAAGTTTG+TGG 0.392548 2_3:-30908803 Msa0287740:three_prime_UTR
TCTCTATGTAAAAGTCAGTA+TGG 0.396729 2_3:-30910166 Msa0287740:CDS
AAGTTCCATATAGTTGTTGT+AGG 0.402215 2_3:+30910107 None:intergenic
ATGTTCAAAAGAACCTTCTT+GGG 0.409898 2_3:+30911379 None:intergenic
TTGATGAGTCTTCTGGGAAA+TGG 0.428366 2_3:-30910923 Msa0287740:CDS
AGATCAACCTTTCTGAGATA+AGG 0.437164 2_3:+30910135 None:intergenic
TTTCCAACATTCCCTCCTCT+TGG 0.438896 2_3:+30910855 None:intergenic
ATGAAGATAAAGATGGAGAT+TGG 0.439416 2_3:-30909689 Msa0287740:CDS
CCTGGACTTCCTGGGAAAGA+TGG 0.446287 2_3:-30909768 Msa0287740:CDS
AAATATGTGTATATATTCTC+TGG 0.453827 2_3:+30908842 None:intergenic
ATGCCATTGATGAGTCTTCT+GGG 0.457749 2_3:-30910929 Msa0287740:CDS
TTTGTGGCTGTATAAAAGAA+TGG 0.458305 2_3:-30908787 Msa0287740:three_prime_UTR
TGTACATGAAAAGAATAAAC+AGG 0.460606 2_3:-30910745 Msa0287740:CDS
TGTAATAGGGCACAGGTTGT+GGG 0.465911 2_3:-30910282 Msa0287740:intron
GACTAAGTGAGAGCTCTTTG+AGG 0.466933 2_3:-30909746 Msa0287740:CDS
TCAGGTCAATGCAATTCTCC+TGG 0.470704 2_3:-30909786 Msa0287740:intron
CAAGAGCCATGGGAAAATCT+AGG 0.474403 2_3:-30909058 Msa0287740:CDS
CCATCTTTCCCAGGAAGTCC+AGG 0.476059 2_3:+30909768 None:intergenic
AAGAACCTTGTAGCTAGTGT+TGG 0.483602 2_3:-30910972 Msa0287740:CDS
TGAAAGGCTCCGAGGCAATT+GGG 0.483983 2_3:-30909360 Msa0287740:CDS
CCGACTCGTGTAGGAGACTA+AGG 0.487592 2_3:-30909387 Msa0287740:CDS
TTTCGAAACGATCGAATTGG+TGG 0.491043 2_3:+30910255 None:intergenic
AGTGAAGATGGGACGCTGCC+CGG 0.493172 2_3:-30908682 Msa0287740:three_prime_UTR
ACATAGAGACAGTCAAATCC+TGG 0.496327 2_3:+30910180 None:intergenic
TATACAGCCACAAACTTCAA+AGG 0.497093 2_3:+30908796 None:intergenic
GTTAGTACCAATGGTAAAGC+AGG 0.504295 2_3:+30910059 None:intergenic
TCAGTTGCTACTGCTGCTGC+TGG 0.505717 2_3:-30911056 Msa0287740:CDS
GATGGAGATTGGATGCTTGT+AGG 0.506785 2_3:-30909678 Msa0287740:CDS
CTATCAGGAGATTCACAACC+AGG 0.513603 2_3:+30911083 None:intergenic
GAGCTCAGACTAGGCTTACC+TGG 0.513881 2_3:-30911101 Msa0287740:CDS
TGGAGTTTCTCTATGAATGA+TGG 0.515427 2_3:-30910903 Msa0287740:CDS
TTTAGCAAATAATCCATCAA+TGG 0.515926 2_3:-30911159 Msa0287740:CDS
GCTAGTGTTGGAGCTAAAAG+AGG 0.516388 2_3:-30910960 Msa0287740:CDS
GTTGCTACTGCTGCTGCTGG+TGG 0.518150 2_3:-30911053 Msa0287740:CDS
TAGCTCCAACACTAGCTACA+AGG 0.519601 2_3:+30910967 None:intergenic
CCATTAGAACATGATTACAT+AGG 0.521656 2_3:-30911182 Msa0287740:CDS
GGCTCCGAGGCAATTGGGCT+AGG 0.521923 2_3:-30909355 Msa0287740:intron
GATGAAGCTGAGGGAAAACC+AGG 0.522587 2_3:-30910198 Msa0287740:CDS
GGTAGGAAATCGGTTTGCTA+TGG 0.523498 2_3:+30908615 None:intergenic
ATGTTCACCTGCTTTACCAT+TGG 0.525163 2_3:-30910066 Msa0287740:intron
TAGTAGCATAGGAGAGGAGT+TGG 0.526621 2_3:+30911344 None:intergenic
TCTCCAAGAGGAGGGAATGT+TGG 0.528075 2_3:-30910858 Msa0287740:CDS
TCACTTAGTCCATCTTTCCC+AGG 0.528669 2_3:+30909759 None:intergenic
ACTAAGTGAGAGCTCTTTGA+GGG 0.537995 2_3:-30909745 Msa0287740:CDS
GCAATTCTCCTGGACTTCCT+GGG 0.538453 2_3:-30909776 Msa0287740:CDS
CTTACATATGAAGATAAAGA+TGG 0.540325 2_3:-30909696 Msa0287740:CDS
AGCATAGGAGAGGAGTTGGC+TGG 0.541759 2_3:+30911348 None:intergenic
CATACCTAGCCCAATTGCCT+CGG 0.543011 2_3:+30909351 None:intergenic
GTTTGCAGCTCCAAGAGCCA+TGG 0.546429 2_3:-30909069 Msa0287740:intron
TATGTAAAAGTCAGTATGGA+TGG 0.548265 2_3:-30910162 Msa0287740:CDS
AGTCTCTTTCTTTGCCAACA+AGG 0.555451 2_3:-30911030 Msa0287740:CDS
AAAGAAACATACTTTGCAGC+AGG 0.558479 2_3:+30910693 None:intergenic
TGCATATATAAAGGTTTACA+AGG 0.561342 2_3:-30908981 Msa0287740:three_prime_UTR
TTTGCAGCTCCAAGAGCCAT+GGG 0.568102 2_3:-30909068 Msa0287740:intron
TGATATGTATGTAGTAGCAT+AGG 0.570912 2_3:+30911333 None:intergenic
TCTATGAATGATGGATCTGA+AGG 0.572939 2_3:-30910894 Msa0287740:CDS
AAGGAAACTGAGCTCAGACT+AGG 0.575995 2_3:-30911110 Msa0287740:CDS
AAACTTCTGTAATAGGGCAC+AGG 0.579506 2_3:-30910289 Msa0287740:intron
TGGTGCTCCTTATCTCAGAA+AGG 0.583817 2_3:-30910142 Msa0287740:CDS
TTTCCCAGAAGACTCATCAA+TGG 0.587418 2_3:+30910926 None:intergenic
TGGTACAGAAAGTCCCAAGA+AGG 0.589577 2_3:-30911392 Msa0287740:five_prime_UTR
GTTTGTTCTCTCCAAGAGGA+GGG 0.594139 2_3:-30910866 Msa0287740:CDS
AAAGAACAATGATGAAGCTG+AGG 0.598000 2_3:-30910208 Msa0287740:CDS
GGTTTGTTCTCTCCAAGAGG+AGG 0.598726 2_3:-30910867 Msa0287740:CDS
GGATGTTCGCCGACTCGTGT+AGG 0.604960 2_3:-30909396 Msa0287740:CDS
TGTATGTAGTAGCATAGGAG+AGG 0.607709 2_3:+30911338 None:intergenic
AATGATGGATCTGAAGGAGC+TGG 0.608371 2_3:-30910888 Msa0287740:CDS
CTAGCTACAAGGTTCTTCAA+AGG 0.626425 2_3:+30910978 None:intergenic
ATAGGGCACAGGTTGTGGGA+TGG 0.638025 2_3:-30910278 Msa0287740:intron
AAGAACAATGATGAAGCTGA+GGG 0.641734 2_3:-30910207 Msa0287740:CDS
GCTGGTTTGTTCTCTCCAAG+AGG 0.643608 2_3:-30910870 Msa0287740:CDS
CCTTAGTCTCCTACACGAGT+CGG 0.654169 2_3:+30909387 None:intergenic
AGGAGACTAAGGATCATGAA+AGG 0.655773 2_3:-30909376 Msa0287740:CDS
CTTGTAGGTGATGTTCCTTG+GGG 0.665765 2_3:-30909663 Msa0287740:CDS
TTGTAGGTGATGTTCCTTGG+GGG 0.698490 2_3:-30909662 Msa0287740:intron
AAGGATCATGAAAGGCTCCG+AGG 0.730710 2_3:-30909368 Msa0287740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTGTTTTTTTAT+GGG - chr2_3:30909521-30909540 Msa0287740:intron 10.0%
!!! TATTTGATATTTTTTCATCT+AGG - chr2_3:30908816-30908835 Msa0287740:three_prime_UTR 15.0%
!!! GTTTTTTGTTTGTTTTTTTA+TGG - chr2_3:30909520-30909539 Msa0287740:intron 15.0%
!!! AAATTATTTACATGTGTTTT+AGG - chr2_3:30910072-30910091 Msa0287740:CDS 15.0%
!!! GTTACATATATTTTTGATTT+TGG + chr2_3:30911104-30911123 None:intergenic 15.0%
!! AAAAGAAAGAGTAAAAAGTT+TGG - chr2_3:30908625-30908644 Msa0287740:three_prime_UTR 20.0%
!! AAAAAATCATGTCTATTCAA+GGG + chr2_3:30909567-30909586 None:intergenic 20.0%
!! AAAAAAATCATGTCTATTCA+AGG + chr2_3:30909568-30909587 None:intergenic 20.0%
!!! CACTATTTTTGAATTATACA+TGG + chr2_3:30909651-30909670 None:intergenic 20.0%
!! CATGTATAATTCAAAAATAG+TGG - chr2_3:30909649-30909668 Msa0287740:intron 20.0%
!! AATAGTGGTTAATGAATATT+TGG - chr2_3:30909664-30909683 Msa0287740:CDS 20.0%
!! ATAGTGGTTAATGAATATTT+GGG - chr2_3:30909665-30909684 Msa0287740:CDS 20.0%
!! GTGTGTAAAAAATCAAAATA+AGG + chr2_3:30910034-30910053 None:intergenic 20.0%
!!! ATTTTACAGCAAGTAAAAAA+AGG + chr2_3:30910056-30910075 None:intergenic 20.0%
!! TAAAATAAACAACAAAAGTC+TGG + chr2_3:30910795-30910814 None:intergenic 20.0%
!! ATATCTTGTAATCTTTGATA+TGG - chr2_3:30910888-30910907 Msa0287740:CDS 20.0%
!! AAATATGTGTATATATTCTC+TGG + chr2_3:30911198-30911217 None:intergenic 20.0%
!! TTTGAACAATTTATGTAGTT+TGG - chr2_3:30911297-30911316 Msa0287740:five_prime_UTR 20.0%
! TTTAGCAAATAATCCATCAA+TGG - chr2_3:30908878-30908897 Msa0287740:three_prime_UTR 25.0%
! TGTACATGAAAAGAATAAAC+AGG - chr2_3:30909292-30909311 Msa0287740:intron 25.0%
! GAAAAGAATAAACAGGTTAA+TGG - chr2_3:30909299-30909318 Msa0287740:intron 25.0%
! CAAAAAAAAGTAAACAGAAC+AGG + chr2_3:30909415-30909434 None:intergenic 25.0%
!!! ACATGATTTTTTTCTCTCTT+TGG - chr2_3:30909575-30909594 Msa0287740:intron 25.0%
! TTGTATCAAACTTCTGTAAT+AGG - chr2_3:30909741-30909760 Msa0287740:CDS 25.0%
! TGTATCAAACTTCTGTAATA+GGG - chr2_3:30909742-30909761 Msa0287740:CDS 25.0%
! TAAGGTAAGTAATTTGAAGA+AGG + chr2_3:30910008-30910027 None:intergenic 25.0%
! AAAATCAAAATAAGGAGCTA+AGG + chr2_3:30910026-30910045 None:intergenic 25.0%
! ATATTCGTATTCCTAAAATC+AGG - chr2_3:30910233-30910252 Msa0287740:CDS 25.0%
! CTTACATATGAAGATAAAGA+TGG - chr2_3:30910341-30910360 Msa0287740:intron 25.0%
!! ATTTCTTTTTATTCGCTGTT+TGG - chr2_3:30910404-30910423 Msa0287740:intron 25.0%
!!! AAGTTGACTTATTTTGTCTT+TGG + chr2_3:30910504-30910523 None:intergenic 25.0%
!! TTACACTCTAGATTTGTTTA+AGG - chr2_3:30910714-30910733 Msa0287740:CDS 25.0%
! ACAATCTAATAATTGTAGTG+CGG + chr2_3:30910866-30910885 None:intergenic 25.0%
! TCACTGATATGCATATATAA+AGG - chr2_3:30911047-30911066 Msa0287740:CDS 25.0%
! TGCATATATAAAGGTTTACA+AGG - chr2_3:30911056-30911075 Msa0287740:CDS 25.0%
! TTTAGTTAGTAGAATTCATC+TGG - chr2_3:30911164-30911183 Msa0287740:CDS 25.0%
!! TGATTTTTATGTAGTGAAGA+TGG - chr2_3:30911343-30911362 Msa0287740:five_prime_UTR 25.0%
!! GATTTTTATGTAGTGAAGAT+GGG - chr2_3:30911344-30911363 Msa0287740:five_prime_UTR 25.0%
ATGTTCAAAAGAACCTTCTT+GGG + chr2_3:30908661-30908680 None:intergenic 30.0%
AATGTTCAAAAGAACCTTCT+TGG + chr2_3:30908662-30908681 None:intergenic 30.0%
TGATATGTATGTAGTAGCAT+AGG + chr2_3:30908707-30908726 None:intergenic 30.0%
CCTATGTAATCATGTTCTAA+TGG + chr2_3:30908858-30908877 None:intergenic 30.0%
CCATTAGAACATGATTACAT+AGG - chr2_3:30908855-30908874 Msa0287740:three_prime_UTR 30.0%
AATGTTCTTCAAATCCTTGT+TGG + chr2_3:30909024-30909043 None:intergenic 30.0%
AATGTTGGAAAAACTCTTGT+TGG - chr2_3:30909194-30909213 Msa0287740:intron 30.0%
TGCAACAAAAAACATCAAAG+AGG - chr2_3:30909256-30909275 Msa0287740:intron 30.0%
! CTTTTGTTCATGTCATGTTT+TGG - chr2_3:30909441-30909460 Msa0287740:intron 30.0%
!!! ATTTGGGTTGTTTTCAGAAA+AGG - chr2_3:30909681-30909700 Msa0287740:CDS 30.0%
TACAGAAGTTTGATACAATG+AGG + chr2_3:30909739-30909758 None:intergenic 30.0%
!!! TTTTTTCGAAACGATCGAAT+TGG + chr2_3:30909788-30909807 None:intergenic 30.0%
TCTCTATGTAAAAGTCAGTA+TGG - chr2_3:30909871-30909890 Msa0287740:intron 30.0%
TATGTAAAAGTCAGTATGGA+TGG - chr2_3:30909875-30909894 Msa0287740:intron 30.0%
AAGTTCCATATAGTTGTTGT+AGG + chr2_3:30909933-30909952 None:intergenic 30.0%
TATCTTATCTAGATCCTGTT+TGG - chr2_3:30910148-30910167 Msa0287740:CDS 30.0%
AATTAACTGTGTAACCAAAC+AGG + chr2_3:30910165-30910184 None:intergenic 30.0%
!! AATTGCATTGACCTGATTTT+AGG + chr2_3:30910247-30910266 None:intergenic 30.0%
ATGAAGATAAAGATGGAGAT+TGG - chr2_3:30910348-30910367 Msa0287740:intron 30.0%
CAGCTTAATTAAGCACTTAT+AGG - chr2_3:30910432-30910451 Msa0287740:intron 30.0%
!! GCTTCAATATGAAAGTGTTT+GGG + chr2_3:30910560-30910579 None:intergenic 30.0%
!! AGCTTCAATATGAAAGTGTT+TGG + chr2_3:30910561-30910580 None:intergenic 30.0%
! AATCGGCTTAACTAAATTGT+TGG - chr2_3:30910610-30910629 Msa0287740:intron 30.0%
CAATCTAATAATTGTAGTGC+GGG + chr2_3:30910865-30910884 None:intergenic 30.0%
TAATCTTTGATATGGATCAC+TGG - chr2_3:30910896-30910915 Msa0287740:CDS 30.0%
!!! ATGGATCACTGGTTTTATAT+TGG - chr2_3:30910907-30910926 Msa0287740:CDS 30.0%
! TACAAGGAAGTTTGAGTTTA+TGG - chr2_3:30911072-30911091 Msa0287740:CDS 30.0%
TTTGTGGCTGTATAAAAGAA+TGG - chr2_3:30911250-30911269 Msa0287740:five_prime_UTR 30.0%
! TCGAATGATATTTTCGATTC+CGG + chr2_3:30911377-30911396 None:intergenic 30.0%
! GAAGATGTTTTGTCCATTGA+TGG + chr2_3:30908894-30908913 None:intergenic 35.0%
ATCTTCTTCTCTCAACTTCA+AGG - chr2_3:30908908-30908927 Msa0287740:three_prime_UTR 35.0%
!! GTAGCAACTGATTTTCTATC+AGG + chr2_3:30908972-30908991 None:intergenic 35.0%
TGGAGTTTCTCTATGAATGA+TGG - chr2_3:30909134-30909153 Msa0287740:intron 35.0%
!! TCTATGAATGATGGATCTGA+AGG - chr2_3:30909143-30909162 Msa0287740:intron 35.0%
AAAGAAACATACTTTGCAGC+AGG + chr2_3:30909347-30909366 None:intergenic 35.0%
TGGTTACCTAGATTAGACAA+AGG - chr2_3:30909461-30909480 Msa0287740:intron 35.0%
CTTTCACCTTTGTCTAATCT+AGG + chr2_3:30909470-30909489 None:intergenic 35.0%
ATCGTTTCGAAAAAACACGA+TGG - chr2_3:30909793-30909812 Msa0287740:intron 35.0%
AAAGAACAATGATGAAGCTG+AGG - chr2_3:30909829-30909848 Msa0287740:intron 35.0%
AAGAACAATGATGAAGCTGA+GGG - chr2_3:30909830-30909849 Msa0287740:intron 35.0%
!! AGATCAACCTTTCTGAGATA+AGG + chr2_3:30909905-30909924 None:intergenic 35.0%
CAAGACCTACAACAACTATA+TGG - chr2_3:30909925-30909944 Msa0287740:intron 35.0%
GAAGGTAAAGTTAGTACCAA+TGG + chr2_3:30909990-30910009 None:intergenic 35.0%
TTACATGAGAAAGTCAAGCT+AGG + chr2_3:30910107-30910126 None:intergenic 35.0%
AAAGAAATAACTTACCCCCA+AGG + chr2_3:30910392-30910411 None:intergenic 35.0%
GTTAAATCGTGATAGTCCAA+TGG - chr2_3:30910584-30910603 Msa0287740:intron 35.0%
TGATAGTCCAATGGTTGAAT+CGG - chr2_3:30910593-30910612 Msa0287740:intron 35.0%
! ACTAAATTGTTGGTTGATGC+AGG - chr2_3:30910620-30910639 Msa0287740:intron 35.0%
!!! GAGTTTTTCTGGACTAGTTT+TGG + chr2_3:30911007-30911026 None:intergenic 35.0%
TATCAGTGAATTCTCCTCTT+TGG + chr2_3:30911036-30911055 None:intergenic 35.0%
TATACAGCCACAAACTTCAA+AGG + chr2_3:30911244-30911263 None:intergenic 35.0%
! CGAATGATATTTTCGATTCC+GGG + chr2_3:30911376-30911395 None:intergenic 35.0%
TGTATGTAGTAGCATAGGAG+AGG + chr2_3:30908702-30908721 None:intergenic 40.0%
AGTCTCTTTCTTTGCCAACA+AGG - chr2_3:30909007-30909026 Msa0287740:three_prime_UTR 40.0%
CTAGCTACAAGGTTCTTCAA+AGG + chr2_3:30909062-30909081 None:intergenic 40.0%
AAGAACCTTGTAGCTAGTGT+TGG - chr2_3:30909065-30909084 Msa0287740:intron 40.0%
ATGCCATTGATGAGTCTTCT+GGG - chr2_3:30909108-30909127 Msa0287740:intron 40.0%
TTTCCCAGAAGACTCATCAA+TGG + chr2_3:30909114-30909133 None:intergenic 40.0%
! TTGATGAGTCTTCTGGGAAA+TGG - chr2_3:30909114-30909133 Msa0287740:intron 40.0%
AAACTTCTGTAATAGGGCAC+AGG - chr2_3:30909748-30909767 Msa0287740:CDS 40.0%
TTTCGAAACGATCGAATTGG+TGG + chr2_3:30909785-30909804 None:intergenic 40.0%
ACATAGAGACAGTCAAATCC+TGG + chr2_3:30909860-30909879 None:intergenic 40.0%
ATGTTCACCTGCTTTACCAT+TGG - chr2_3:30909971-30909990 Msa0287740:intron 40.0%
GTTAGTACCAATGGTAAAGC+AGG + chr2_3:30909981-30910000 None:intergenic 40.0%
ACTAAGTGAGAGCTCTTTGA+GGG - chr2_3:30910292-30910311 Msa0287740:intron 40.0%
! TCTTTGAGGGATCTTCTTCA+TGG - chr2_3:30910305-30910324 Msa0287740:intron 40.0%
! AGTTAAGCCGATTCAACCAT+TGG + chr2_3:30910603-30910622 None:intergenic 40.0%
AGGAGACTAAGGATCATGAA+AGG - chr2_3:30910661-30910680 Msa0287740:intron 40.0%
ACTAGTCCAGAAAAACTCGT+TGG - chr2_3:30911009-30911028 Msa0287740:CDS 40.0%
! TTTGGTCCAACGAGTTTTTC+TGG + chr2_3:30911018-30911037 None:intergenic 40.0%
AAAAACTCGTTGGACCAAAG+AGG - chr2_3:30911019-30911038 Msa0287740:CDS 40.0%
!! TTGTGCACCTTTGAAGTTTG+TGG - chr2_3:30911234-30911253 Msa0287740:five_prime_UTR 40.0%
TGGTACAGAAAGTCCCAAGA+AGG - chr2_3:30908645-30908664 Msa0287740:three_prime_UTR 45.0%
TAGTAGCATAGGAGAGGAGT+TGG + chr2_3:30908696-30908715 None:intergenic 45.0%
AAGGAAACTGAGCTCAGACT+AGG - chr2_3:30908927-30908946 Msa0287740:three_prime_UTR 45.0%
CTATCAGGAGATTCACAACC+AGG + chr2_3:30908957-30908976 None:intergenic 45.0%
TAGCTCCAACACTAGCTACA+AGG + chr2_3:30909073-30909092 None:intergenic 45.0%
! GCTAGTGTTGGAGCTAAAAG+AGG - chr2_3:30909077-30909096 Msa0287740:intron 45.0%
GATGCCATTGATGAGTCTTC+TGG - chr2_3:30909107-30909126 Msa0287740:intron 45.0%
!! AATGATGGATCTGAAGGAGC+TGG - chr2_3:30909149-30909168 Msa0287740:intron 45.0%
GTTTGTTCTCTCCAAGAGGA+GGG - chr2_3:30909171-30909190 Msa0287740:intron 45.0%
TTTCCAACATTCCCTCCTCT+TGG + chr2_3:30909185-30909204 None:intergenic 45.0%
TGTAATAGGGCACAGGTTGT+GGG - chr2_3:30909755-30909774 Msa0287740:CDS 45.0%
TGGTGCTCCTTATCTCAGAA+AGG - chr2_3:30909895-30909914 Msa0287740:intron 45.0%
TCAGGTCAATGCAATTCTCC+TGG - chr2_3:30910251-30910270 Msa0287740:CDS 45.0%
TCACTTAGTCCATCTTTCCC+AGG + chr2_3:30910281-30910300 None:intergenic 45.0%
GACTAAGTGAGAGCTCTTTG+AGG - chr2_3:30910291-30910310 Msa0287740:intron 45.0%
GATGGAGATTGGATGCTTGT+AGG - chr2_3:30910359-30910378 Msa0287740:intron 45.0%
TGCTTGTAGGTGATGTTCCT+TGG - chr2_3:30910372-30910391 Msa0287740:intron 45.0%
GCTTGTAGGTGATGTTCCTT+GGG - chr2_3:30910373-30910392 Msa0287740:intron 45.0%
CTTGTAGGTGATGTTCCTTG+GGG - chr2_3:30910374-30910393 Msa0287740:intron 45.0%
TTGTAGGTGATGTTCCTTGG+GGG - chr2_3:30910375-30910394 Msa0287740:intron 45.0%
! CTAGATTTTCCCATGGCTCT+TGG + chr2_3:30910981-30911000 None:intergenic 45.0%
CAAGAGCCATGGGAAAATCT+AGG - chr2_3:30910979-30910998 Msa0287740:CDS 45.0%
! TTGGCTCCTAGATTTTCCCA+TGG + chr2_3:30910988-30911007 None:intergenic 45.0%
!! GCTGGTTTGTTCTCTCCAAG+AGG - chr2_3:30909167-30909186 Msa0287740:intron 50.0%
! GGTTTGTTCTCTCCAAGAGG+AGG - chr2_3:30909170-30909189 Msa0287740:intron 50.0%
TCTCCAAGAGGAGGGAATGT+TGG - chr2_3:30909179-30909198 Msa0287740:intron 50.0%
CTGTAATAGGGCACAGGTTG+TGG - chr2_3:30909754-30909773 Msa0287740:CDS 50.0%
GATGAAGCTGAGGGAAAACC+AGG - chr2_3:30909839-30909858 Msa0287740:intron 50.0%
TGCAATTCTCCTGGACTTCC+TGG - chr2_3:30910260-30910279 Msa0287740:CDS 50.0%
GCAATTCTCCTGGACTTCCT+GGG - chr2_3:30910261-30910280 Msa0287740:CDS 50.0%
CCTTAGTCTCCTACACGAGT+CGG + chr2_3:30910653-30910672 None:intergenic 50.0%
AAGGATCATGAAAGGCTCCG+AGG - chr2_3:30910669-30910688 Msa0287740:intron 50.0%
ATGAAAGGCTCCGAGGCAAT+TGG - chr2_3:30910676-30910695 Msa0287740:intron 50.0%
TGAAAGGCTCCGAGGCAATT+GGG - chr2_3:30910677-30910696 Msa0287740:intron 50.0%
CATACCTAGCCCAATTGCCT+CGG + chr2_3:30910689-30910708 None:intergenic 50.0%
TTTGCAGCTCCAAGAGCCAT+GGG - chr2_3:30910969-30910988 Msa0287740:CDS 50.0%
AGCATAGGAGAGGAGTTGGC+TGG + chr2_3:30908692-30908711 None:intergenic 55.0%
GAGCTCAGACTAGGCTTACC+TGG - chr2_3:30908936-30908955 Msa0287740:three_prime_UTR 55.0%
TCAGTTGCTACTGCTGCTGC+TGG - chr2_3:30908981-30909000 Msa0287740:three_prime_UTR 55.0%
ATAGGGCACAGGTTGTGGGA+TGG - chr2_3:30909759-30909778 Msa0287740:CDS 55.0%
CCATCTTTCCCAGGAAGTCC+AGG + chr2_3:30910272-30910291 None:intergenic 55.0%
CCTGGACTTCCTGGGAAAGA+TGG - chr2_3:30910269-30910288 Msa0287740:CDS 55.0%
! CCGACTCGTGTAGGAGACTA+AGG - chr2_3:30910650-30910669 Msa0287740:intron 55.0%
GTTTGCAGCTCCAAGAGCCA+TGG - chr2_3:30910968-30910987 Msa0287740:CDS 55.0%
GTTGCTACTGCTGCTGCTGG+TGG - chr2_3:30908984-30909003 Msa0287740:three_prime_UTR 60.0%
!! GGATGTTCGCCGACTCGTGT+AGG - chr2_3:30910641-30910660 Msa0287740:intron 60.0%
AGTGAAGATGGGACGCTGCC+CGG - chr2_3:30911355-30911374 Msa0287740:five_prime_UTR 60.0%
GGCTCCGAGGCAATTGGGCT+AGG - chr2_3:30910682-30910701 Msa0287740:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 30908625 30911434 30908625 ID=Msa0287740;Name=Msa0287740
chr2_3 mRNA 30908625 30911434 30908625 ID=Msa0287740-mRNA-1;Parent=Msa0287740;Name=Msa0287740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=221|1|1|1|1|1|5|421|326
chr2_3 exon 30908625 30909083 30908625 ID=Msa0287740-mRNA-1:exon:10583;Parent=Msa0287740-mRNA-1
chr2_3 exon 30909356 30909417 30909356 ID=Msa0287740-mRNA-1:exon:10582;Parent=Msa0287740-mRNA-1
chr2_3 exon 30909663 30909804 30909663 ID=Msa0287740-mRNA-1:exon:10581;Parent=Msa0287740-mRNA-1
chr2_3 exon 30910067 30910296 30910067 ID=Msa0287740-mRNA-1:exon:10580;Parent=Msa0287740-mRNA-1
chr2_3 exon 30910705 30911434 30910705 ID=Msa0287740-mRNA-1:exon:10579;Parent=Msa0287740-mRNA-1
chr2_3 five_prime_UTR 30911214 30911434 30911214 ID=Msa0287740-mRNA-1:five_prime_utr;Parent=Msa0287740-mRNA-1
chr2_3 CDS 30910705 30911213 30910705 ID=Msa0287740-mRNA-1:cds;Parent=Msa0287740-mRNA-1
chr2_3 CDS 30910067 30910296 30910067 ID=Msa0287740-mRNA-1:cds;Parent=Msa0287740-mRNA-1
chr2_3 CDS 30909663 30909804 30909663 ID=Msa0287740-mRNA-1:cds;Parent=Msa0287740-mRNA-1
chr2_3 CDS 30909356 30909417 30909356 ID=Msa0287740-mRNA-1:cds;Parent=Msa0287740-mRNA-1
chr2_3 CDS 30909046 30909083 30909046 ID=Msa0287740-mRNA-1:cds;Parent=Msa0287740-mRNA-1
chr2_3 three_prime_UTR 30908625 30909045 30908625 ID=Msa0287740-mRNA-1:three_prime_utr;Parent=Msa0287740-mRNA-1
Gene Sequence

>Msa0287740

ATGTCTACACCATTAGAACATGATTACATAGGTTTAGCAAATAATCCATCAATGGACAAAACATCTTCTTCTCTCAACTTCAAGGAAACTGAGCTCAGACTAGGCTTACCTGGTTGTGAATCTCCTGATAGAAAATCAGTTGCTACTGCTGCTGCTGGTGGAGTCTCTTTCTTTGCCAACAAGGATTTGAAGAACATTAATGTTTGTTCTTCTCCTTTGAAGAACCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTCTGATGCCATTGATGAGTCTTCTGGGAAATGGAGTTTCTCTATGAATGATGGATCTGAAGGAGCTGGTTTGTTCTCTCCAAGAGGAGGGAATGTTGGAAAAACTCTTGTTGGTTTAGAGACTCAAACTAATATTCAGAAGATTAATACAAATGCAACAAAAAACATCAAAGAGGTTCTTCATCAATCTGTACATGAAAAGAATAAACAGGTTAATGGAACAAATGAGCATGCTAATGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCGTTTCGAAAAAACACGATGGCATCTAATTTGTCAAAGAACAATGATGAAGCTGAGGGAAAACCAGGATTTGACTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAGACCTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACCTGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGTGATGTTCCTTGGGGGATGTTCGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGCTCCAAGAGCCATGGGAAAATCTAGGAGCCAAAACTAG

Protein sequence

>Msa0287740

MSTPLEHDYIGLANNPSMDKTSSSLNFKETELRLGLPGCESPDRKSVATAAAGGVSFFANKDLKNINVCSSPLKNLVASVGAKRGFSDAIDESSGKWSFSMNDGSEGAGLFSPRGGNVGKTLVGLETQTNIQKINTNATKNIKEVLHQSVHEKNKQVNGTNEHANAPAAKAQVVGWPPIRSFRKNTMASNLSKNNDEAEGKPGFDCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLAPRAMGKSRSQN*