Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449480 | A0A0C3X8T8 | 97.305 | 334 | 9 | 0 | 1 | 334 | 1 | 334 | 0.0 | 681 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa1449480 | 0.831726 | 1.417399e-55 | -8.615850e-47 |
| Msa0001940 | Msa1449480 | 0.815722 | 7.990449e-52 | -8.615850e-47 |
| Msa0002370 | Msa1449480 | 0.807155 | 5.802185e-50 | -8.615850e-47 |
| Msa0002580 | Msa1449480 | 0.803482 | 3.414214e-49 | -8.615850e-47 |
| Msa0005890 | Msa1449480 | 0.837939 | 3.865973e-57 | -8.615850e-47 |
| Msa0017950 | Msa1449480 | 0.810528 | 1.102375e-50 | -8.615850e-47 |
| Msa0027820 | Msa1449480 | 0.810595 | 1.066170e-50 | -8.615850e-47 |
| Msa0034810 | Msa1449480 | 0.809739 | 1.630383e-50 | -8.615850e-47 |
| Msa0048510 | Msa1449480 | 0.808412 | 3.136544e-50 | -8.615850e-47 |
| Msa0050660 | Msa1449480 | 0.808067 | 3.715426e-50 | -8.615850e-47 |
| Msa0050700 | Msa1449480 | 0.810479 | 1.129428e-50 | -8.615850e-47 |
| Msa0050790 | Msa1449480 | 0.813258 | 2.802872e-51 | -8.615850e-47 |
| Msa0054690 | Msa1449480 | 0.836064 | 1.164817e-56 | -8.615850e-47 |
| Msa0071860 | Msa1449480 | 0.803960 | 2.716100e-49 | -8.615850e-47 |
| Msa0071880 | Msa1449480 | 0.831945 | 1.251849e-55 | -8.615850e-47 |
| Msa0081520 | Msa1449480 | 0.842449 | 2.568394e-58 | -8.615850e-47 |
| Msa0090400 | Msa1449480 | 0.804676 | 1.927026e-49 | -8.615850e-47 |
| Msa0094780 | Msa1449480 | 0.835105 | 2.036379e-56 | -8.615850e-47 |
| Msa1346560 | Msa1449480 | 0.809975 | 1.450412e-50 | -8.615850e-47 |
| Msa1348090 | Msa1449480 | 0.806606 | 7.582107e-50 | -8.615850e-47 |
| Msa1356830 | Msa1449480 | 0.842839 | 2.022963e-58 | -8.615850e-47 |
| Msa1359690 | Msa1449480 | 0.825324 | 4.988829e-54 | -8.615850e-47 |
| Msa1372040 | Msa1449480 | 0.802549 | 5.322577e-49 | -8.615850e-47 |
| Msa1387620 | Msa1449480 | 0.939598 | 9.709471e-100 | -8.615850e-47 |
| Msa1396030 | Msa1449480 | 0.808029 | 3.785442e-50 | -8.615850e-47 |
| Msa1397400 | Msa1449480 | 0.827075 | 1.910760e-54 | -8.615850e-47 |
| Msa1420950 | Msa1449480 | 0.805872 | 1.082088e-49 | -8.615850e-47 |
| Msa1432500 | Msa1449480 | 0.801590 | 8.382086e-49 | -8.615850e-47 |
| Msa1433810 | Msa1449480 | 0.823369 | 1.437168e-53 | -8.615850e-47 |
| Msa1437940 | Msa1449480 | 0.825747 | 3.960232e-54 | -8.615850e-47 |
| Msa1440630 | Msa1449480 | 0.814456 | 1.526886e-51 | -8.615850e-47 |
| Msa1440960 | Msa1449480 | 0.831392 | 1.712906e-55 | -8.615850e-47 |
| Msa0611210 | Msa1449480 | 0.800570 | 1.354923e-48 | -8.615850e-47 |
| Msa0626450 | Msa1449480 | 0.841803 | 3.806588e-58 | -8.615850e-47 |
| Msa0626490 | Msa1449480 | 0.837242 | 5.835164e-57 | -8.615850e-47 |
| Msa0644410 | Msa1449480 | 0.845877 | 3.087778e-59 | -8.615850e-47 |
| Msa0651550 | Msa1449480 | 0.807958 | 3.918895e-50 | -8.615850e-47 |
| Msa0661150 | Msa1449480 | 0.811984 | 5.325214e-51 | -8.615850e-47 |
| Msa0664600 | Msa1449480 | 0.835864 | 1.309042e-56 | -8.615850e-47 |
| Msa0675330 | Msa1449480 | 0.804224 | 2.394023e-49 | -8.615850e-47 |
| Msa0683470 | Msa1449480 | 0.804444 | 2.153511e-49 | -8.615850e-47 |
| Msa0683570 | Msa1449480 | 0.810896 | 9.175011e-51 | -8.615850e-47 |
| Msa0701700 | Msa1449480 | 0.802208 | 6.257656e-49 | -8.615850e-47 |
| Msa0721080 | Msa1449480 | 0.807804 | 4.225709e-50 | -8.615850e-47 |
| Msa0725770 | Msa1449480 | 0.804957 | 1.683187e-49 | -8.615850e-47 |
| Msa0736960 | Msa1449480 | 0.801344 | 9.411180e-49 | -8.615850e-47 |
| Msa0741220 | Msa1449480 | 0.853850 | 1.819270e-61 | -8.615850e-47 |
| Msa0742740 | Msa1449480 | 0.833702 | 4.581468e-56 | -8.615850e-47 |
| Msa0754520 | Msa1449480 | 0.802075 | 6.663568e-49 | -8.615850e-47 |
| Msa0756490 | Msa1449480 | 0.806587 | 7.651459e-50 | -8.615850e-47 |
| Msa0765240 | Msa1449480 | 0.823172 | 1.598314e-53 | -8.615850e-47 |
| Msa0766350 | Msa1449480 | 0.803558 | 3.291795e-49 | -8.615850e-47 |
| Msa0778590 | Msa1449480 | 0.817893 | 2.603709e-52 | -8.615850e-47 |
| Msa0779870 | Msa1449480 | 0.841634 | 4.219016e-58 | -8.615850e-47 |
| Msa0780270 | Msa1449480 | 0.836954 | 6.913444e-57 | -8.615850e-47 |
| Msa0795870 | Msa1449480 | 0.852798 | 3.642913e-61 | -8.615850e-47 |
| Msa0815960 | Msa1449480 | 0.801305 | 9.587380e-49 | -8.615850e-47 |
| Msa0819170 | Msa1449480 | 0.814133 | 1.799146e-51 | -8.615850e-47 |
| Msa0823820 | Msa1449480 | 0.849278 | 3.582640e-60 | -8.615850e-47 |
| Msa0824450 | Msa1449480 | 0.817504 | 3.187191e-52 | -8.615850e-47 |
| Msa0833220 | Msa1449480 | 0.816672 | 4.900266e-52 | -8.615850e-47 |
| Msa0833650 | Msa1449480 | 0.851638 | 7.789946e-61 | -8.615850e-47 |
| Msa0835490 | Msa1449480 | 0.815699 | 8.087751e-52 | -8.615850e-47 |
| Msa0136650 | Msa1449480 | 0.827820 | 1.266580e-54 | -8.615850e-47 |
| Msa0140280 | Msa1449480 | 0.816468 | 5.444309e-52 | -8.615850e-47 |
| Msa0173890 | Msa1449480 | 0.815704 | 8.065974e-52 | -8.615850e-47 |
| Msa0174450 | Msa1449480 | 0.831280 | 1.825817e-55 | -8.615850e-47 |
| Msa0190570 | Msa1449480 | 0.805998 | 1.018372e-49 | -8.615850e-47 |
| Msa0199520 | Msa1449480 | 0.802124 | 6.509693e-49 | -8.615850e-47 |
| Msa0219880 | Msa1449480 | 0.817566 | 3.085001e-52 | -8.615850e-47 |
| Msa0221000 | Msa1449480 | 0.817784 | 2.756008e-52 | -8.615850e-47 |
| Msa0225100 | Msa1449480 | 0.850807 | 1.337236e-60 | -8.615850e-47 |
| Msa0225860 | Msa1449480 | 0.858816 | 6.352663e-63 | -8.615850e-47 |
| Msa1225860 | Msa1449480 | -0.814455 | 1.527560e-51 | -8.615850e-47 |
| Msa1226520 | Msa1449480 | 0.801812 | 7.546383e-49 | -8.615850e-47 |
| Msa1228200 | Msa1449480 | 0.824852 | 6.446926e-54 | -8.615850e-47 |
| Msa1257300 | Msa1449480 | 0.809383 | 1.944534e-50 | -8.615850e-47 |
| Msa1263490 | Msa1449480 | 0.939945 | 5.403211e-100 | -8.615850e-47 |
| Msa1265650 | Msa1449480 | 0.805312 | 1.418689e-49 | -8.615850e-47 |
| Msa1267770 | Msa1449480 | 0.810905 | 9.135169e-51 | -8.615850e-47 |
| Msa1277220 | Msa1449480 | 0.820377 | 7.082940e-53 | -8.615850e-47 |
| Msa1292590 | Msa1449480 | 0.815172 | 1.059341e-51 | -8.615850e-47 |
| Msa1297230 | Msa1449480 | 0.833891 | 4.109601e-56 | -8.615850e-47 |
| Msa1303560 | Msa1449480 | 0.826361 | 2.830260e-54 | -8.615850e-47 |
| Msa1303650 | Msa1449480 | 0.821310 | 4.320690e-53 | -8.615850e-47 |
| Msa1308140 | Msa1449480 | 0.801386 | 9.225620e-49 | -8.615850e-47 |
| Msa1314650 | Msa1449480 | 0.808162 | 3.546614e-50 | -8.615850e-47 |
| Msa1315590 | Msa1449480 | 0.819092 | 1.392543e-52 | -8.615850e-47 |
| Msa1328710 | Msa1449480 | 0.814201 | 1.737680e-51 | -8.615850e-47 |
| Msa1343180 | Msa1449480 | 0.805846 | 1.095800e-49 | -8.615850e-47 |
| Msa1343430 | Msa1449480 | 0.836637 | 8.327118e-57 | -8.615850e-47 |
| Msa0369790 | Msa1449480 | 0.844300 | 8.236198e-59 | -8.615850e-47 |
| Msa0371030 | Msa1449480 | 0.804340 | 2.263793e-49 | -8.615850e-47 |
| Msa0378720 | Msa1449480 | 0.834897 | 2.297940e-56 | -8.615850e-47 |
| Msa0380620 | Msa1449480 | 0.824608 | 7.359083e-54 | -8.615850e-47 |
| Msa0380670 | Msa1449480 | 0.812666 | 3.780103e-51 | -8.615850e-47 |
| Msa0428370 | Msa1449480 | 0.835847 | 1.322115e-56 | -8.615850e-47 |
| Msa0430260 | Msa1449480 | 0.834856 | 2.353013e-56 | -8.615850e-47 |
| Msa0430300 | Msa1449480 | 0.810586 | 1.070960e-50 | -8.615850e-47 |
| Msa0436910 | Msa1449480 | 0.804062 | 2.586949e-49 | -8.615850e-47 |
| Msa0440440 | Msa1449480 | 0.815211 | 1.038513e-51 | -8.615850e-47 |
| Msa0464000 | Msa1449480 | 0.841790 | 3.838340e-58 | -8.615850e-47 |
| Msa0472950 | Msa1449480 | 0.815231 | 1.027803e-51 | -8.615850e-47 |
| Msa0474730 | Msa1449480 | 0.829665 | 4.532590e-55 | -8.615850e-47 |
| Msa1011530 | Msa1449480 | 0.810115 | 1.353434e-50 | -8.615850e-47 |
| Msa1019430 | Msa1449480 | 0.807210 | 5.648298e-50 | -8.615850e-47 |
| Msa1019470 | Msa1449480 | 0.823620 | 1.255974e-53 | -8.615850e-47 |
| Msa1020510 | Msa1449480 | 0.801143 | 1.034758e-48 | -8.615850e-47 |
| Msa1020670 | Msa1449480 | 0.826025 | 3.401810e-54 | -8.615850e-47 |
| Msa1028280 | Msa1449480 | 0.801614 | 8.287393e-49 | -8.615850e-47 |
| Msa1031930 | Msa1449480 | 0.804036 | 2.619174e-49 | -8.615850e-47 |
| Msa1035960 | Msa1449480 | 0.815851 | 7.481567e-52 | -8.615850e-47 |
| Msa1042160 | Msa1449480 | 0.832984 | 6.917057e-56 | -8.615850e-47 |
| Msa1042190 | Msa1449480 | 0.826655 | 2.407548e-54 | -8.615850e-47 |
| Msa1043370 | Msa1449480 | 0.802234 | 6.179399e-49 | -8.615850e-47 |
| Msa1044680 | Msa1449480 | 0.800455 | 1.430084e-48 | -8.615850e-47 |
| Msa1048920 | Msa1449480 | 0.804459 | 2.137992e-49 | -8.615850e-47 |
| Msa1051830 | Msa1449480 | 0.802301 | 5.986991e-49 | -8.615850e-47 |
| Msa1068190 | Msa1449480 | 0.800468 | 1.421310e-48 | -8.615850e-47 |
| Msa1072940 | Msa1449480 | 0.806604 | 7.586750e-50 | -8.615850e-47 |
| Msa1096970 | Msa1449480 | 0.821840 | 3.260310e-53 | -8.615850e-47 |
| Msa0242590 | Msa1449480 | 0.810498 | 1.118951e-50 | -8.615850e-47 |
| Msa0244640 | Msa1449480 | 0.834135 | 3.569785e-56 | -8.615850e-47 |
| Msa0260510 | Msa1449480 | 0.818601 | 1.800622e-52 | -8.615850e-47 |
| Msa0265850 | Msa1449480 | 0.828480 | 8.783627e-55 | -8.615850e-47 |
| Msa0266180 | Msa1449480 | 0.826667 | 2.391736e-54 | -8.615850e-47 |
| Msa0267110 | Msa1449480 | 0.811613 | 6.414044e-51 | -8.615850e-47 |
| Msa0283330 | Msa1449480 | 0.810795 | 9.649056e-51 | -8.615850e-47 |
| Msa0287740 | Msa1449480 | 0.844891 | 5.708328e-59 | -8.615850e-47 |
| Msa0292400 | Msa1449480 | 0.813463 | 2.527837e-51 | -8.615850e-47 |
| Msa0297790 | Msa1449480 | 0.813852 | 2.074764e-51 | -8.615850e-47 |
| Msa0298470 | Msa1449480 | 0.817530 | 3.143940e-52 | -8.615850e-47 |
| Msa0300270 | Msa1449480 | 0.819717 | 1.003138e-52 | -8.615850e-47 |
| Msa0300320 | Msa1449480 | 0.809732 | 1.636118e-50 | -8.615850e-47 |
| Msa0307270 | Msa1449480 | 0.808945 | 2.413623e-50 | -8.615850e-47 |
| Msa0321620 | Msa1449480 | 0.810398 | 1.175792e-50 | -8.615850e-47 |
| Msa0330380 | Msa1449480 | 0.820472 | 6.738344e-53 | -8.615850e-47 |
| Msa0337700 | Msa1449480 | 0.837397 | 5.325013e-57 | -8.615850e-47 |
| Msa0340500 | Msa1449480 | 0.815308 | 9.879113e-52 | -8.615850e-47 |
| Msa0341690 | Msa1449480 | 0.803038 | 4.217440e-49 | -8.615850e-47 |
| Msa0363200 | Msa1449480 | 0.801822 | 7.510457e-49 | -8.615850e-47 |
| Msa1113800 | Msa1449480 | 0.806758 | 7.041388e-50 | -8.615850e-47 |
| Msa1132840 | Msa1449480 | 0.859882 | 3.040772e-63 | -8.615850e-47 |
| Msa1140210 | Msa1449480 | 0.828491 | 8.728533e-55 | -8.615850e-47 |
| Msa1145810 | Msa1449480 | 0.800936 | 1.140498e-48 | -8.615850e-47 |
| Msa1155170 | Msa1449480 | -0.822852 | 1.897654e-53 | -8.615850e-47 |
| Msa1160500 | Msa1449480 | 0.812152 | 4.894832e-51 | -8.615850e-47 |
| Msa1160920 | Msa1449480 | 0.816447 | 5.503203e-52 | -8.615850e-47 |
| Msa1161680 | Msa1449480 | 0.800649 | 1.305591e-48 | -8.615850e-47 |
| Msa1167470 | Msa1449480 | 0.806692 | 7.272062e-50 | -8.615850e-47 |
| Msa1186020 | Msa1449480 | 0.812497 | 4.116133e-51 | -8.615850e-47 |
| Msa1192570 | Msa1449480 | 0.800226 | 1.591545e-48 | -8.615850e-47 |
| Msa1199570 | Msa1449480 | 0.816397 | 5.647109e-52 | -8.615850e-47 |
| Msa1200890 | Msa1449480 | 0.822419 | 2.392378e-53 | -8.615850e-47 |
| Msa1208950 | Msa1449480 | 0.818866 | 1.567284e-52 | -8.615850e-47 |
| Msa1215870 | Msa1449480 | 0.804256 | 2.356911e-49 | -8.615850e-47 |
| Msa1223570 | Msa1449480 | 0.957894 | 8.967814e-116 | -8.615850e-47 |
| Msa0500380 | Msa1449480 | 0.803368 | 3.605006e-49 | -8.615850e-47 |
| Msa0509550 | Msa1449480 | 0.842292 | 2.826979e-58 | -8.615850e-47 |
| Msa0519830 | Msa1449480 | 0.800489 | 1.406836e-48 | -8.615850e-47 |
| Msa0528570 | Msa1449480 | 0.813595 | 2.364145e-51 | -8.615850e-47 |
| Msa0530780 | Msa1449480 | 0.823233 | 1.546300e-53 | -8.615850e-47 |
| Msa0534720 | Msa1449480 | 0.803246 | 3.820160e-49 | -8.615850e-47 |
| Msa0546500 | Msa1449480 | 0.812927 | 3.313355e-51 | -8.615850e-47 |
| Msa0548470 | Msa1449480 | 0.843256 | 1.567202e-58 | -8.615850e-47 |
| Msa0557460 | Msa1449480 | 0.825235 | 5.234691e-54 | -8.615850e-47 |
| Msa0571290 | Msa1449480 | 0.806190 | 9.275953e-50 | -8.615850e-47 |
| Msa0580370 | Msa1449480 | 0.862852 | 3.779435e-64 | -8.615850e-47 |
| Msa0581470 | Msa1449480 | 0.815504 | 8.936685e-52 | -8.615850e-47 |
| Msa0583360 | Msa1449480 | -0.816962 | 4.219030e-52 | -8.615850e-47 |
| Msa0587620 | Msa1449480 | 0.803021 | 4.253458e-49 | -8.615850e-47 |
| Msa0590830 | Msa1449480 | 0.810932 | 9.013821e-51 | -8.615850e-47 |
| Msa0597270 | Msa1449480 | 0.821876 | 3.198446e-53 | -8.615850e-47 |
| Msa0597790 | Msa1449480 | 0.809977 | 1.449298e-50 | -8.615850e-47 |
| Msa0861510 | Msa1449480 | 0.828403 | 9.168964e-55 | -8.615850e-47 |
| Msa0861530 | Msa1449480 | 0.805651 | 1.204279e-49 | -8.615850e-47 |
| Msa0861600 | Msa1449480 | 0.828227 | 1.011055e-54 | -8.615850e-47 |
| Msa0861850 | Msa1449480 | 0.831737 | 1.409053e-55 | -8.615850e-47 |
| Msa0861870 | Msa1449480 | 0.804374 | 2.227694e-49 | -8.615850e-47 |
| Msa0863010 | Msa1449480 | 0.852284 | 5.107395e-61 | -8.615850e-47 |
| Msa0866520 | Msa1449480 | 0.839898 | 1.203173e-57 | -8.615850e-47 |
| Msa0945110 | Msa1449480 | 0.816015 | 6.875629e-52 | -8.615850e-47 |
| Msa0967870 | Msa1449480 | 0.825470 | 4.607300e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449480 | MtrunA17_Chr4g0075211 | 97.305 | 334 | 9 | 0 | 1 | 334 | 1 | 334 | 0.0 | 681 |
| Msa1449480 | MtrunA17_Chr2g0288891 | 78.033 | 305 | 65 | 2 | 31 | 334 | 17 | 320 | 1.13e-176 | 492 |
| Msa1449480 | MtrunA17_Chr4g0069121 | 33.750 | 240 | 133 | 12 | 38 | 269 | 34 | 255 | 1.02e-28 | 112 |
| Msa1449480 | MtrunA17_Chr8g0381971 | 28.223 | 287 | 159 | 12 | 17 | 283 | 10 | 269 | 3.53e-24 | 100 |
| Msa1449480 | MtrunA17_Chr5g0415341 | 27.458 | 295 | 178 | 12 | 24 | 298 | 13 | 291 | 4.69e-20 | 89.0 |
| Msa1449480 | MtrunA17_Chr4g0058901 | 25.161 | 310 | 192 | 12 | 15 | 301 | 13 | 305 | 1.62e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449480 | AT1G11915.1 | 65.123 | 324 | 107 | 6 | 15 | 334 | 8 | 329 | 7.53e-136 | 389 |
| Msa1449480 | AT3G17350.1 | 31.873 | 251 | 144 | 11 | 33 | 271 | 26 | 261 | 1.20e-23 | 99.4 |
| Msa1449480 | AT3G17350.2 | 31.873 | 251 | 144 | 11 | 33 | 271 | 26 | 261 | 1.97e-23 | 98.2 |
| Msa1449480 | AT5G50290.1 | 27.143 | 280 | 171 | 10 | 16 | 277 | 3 | 267 | 1.41e-18 | 85.1 |
| Msa1449480 | AT1G10380.1 | 30.952 | 252 | 151 | 10 | 38 | 276 | 29 | 270 | 2.71e-18 | 84.3 |
| Msa1449480 | AT1G10380.2 | 30.952 | 252 | 151 | 10 | 38 | 276 | 29 | 270 | 3.03e-18 | 84.3 |
Find 67 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTATTTATACAATTA+TGG | 0.120009 | tig0032628:+17097 | Msa1449480:three_prime_UTR |
| GTTACTGCTATTTCAGCTTT+TGG | 0.228291 | tig0032628:+16907 | Msa1449480:CDS |
| TTGGAATTGGAGGTGGTATT+TGG | 0.228294 | tig0032628:+16935 | Msa1449480:CDS |
| CAAGTTATGCTAGTGTTTAT+TGG | 0.239276 | tig0032628:+16197 | Msa1449480:CDS |
| TATGATCAAGTTCCTCAATA+TGG | 0.240179 | tig0032628:+16244 | Msa1449480:CDS |
| CTTTGAACTCCACATGTTAC+TGG | 0.265726 | tig0032628:-16985 | None:intergenic |
| CTCAAAGATTCAGTAGCTTT+AGG | 0.294315 | tig0032628:-16154 | None:intergenic |
| CAACCATCATCAATGGAAAA+AGG | 0.298240 | tig0032628:-15734 | None:intergenic |
| GAAAGAATGAATCTGTAATA+TGG | 0.324413 | tig0032628:-15764 | None:intergenic |
| TTATGGGGCCTCTCTTACTC+AGG | 0.325772 | tig0032628:+17114 | Msa1449480:three_prime_UTR |
| TTATTTATTTATACAATTAT+GGG | 0.332618 | tig0032628:+17098 | Msa1449480:three_prime_UTR |
| ACAAGTTCCACCACCACCTT+TGG | 0.367403 | tig0032628:-16326 | None:intergenic |
| TGTTCACAAAACACAGGCTT+TGG | 0.373458 | tig0032628:-16025 | None:intergenic |
| CAAGATGAATCACAGTGTTC+AGG | 0.400798 | tig0032628:-16052 | None:intergenic |
| GTGCTTGTGTCTAAACTAAA+TGG | 0.403773 | tig0032628:-15932 | None:intergenic |
| AGGAATGTCCATGTAATTGC+AGG | 0.403998 | tig0032628:+16755 | Msa1449480:CDS |
| ATTATTGATAGTAATAAGAT+TGG | 0.411041 | tig0032628:-15626 | None:intergenic |
| CTAAAGCTACTGAATCTTTG+AGG | 0.411355 | tig0032628:+16155 | Msa1449480:CDS |
| ATGATCAAGTTCCTCAATAT+GGG | 0.412810 | tig0032628:+16245 | Msa1449480:CDS |
| CTTGAACTAAGAACACCTTC+TGG | 0.415837 | tig0032628:+15806 | Msa1449480:CDS |
| TTCAATCACCTGCAATTACA+TGG | 0.419145 | tig0032628:-16763 | None:intergenic |
| TGAAGACACCGCGTCGTCAC+TGG | 0.426939 | tig0032628:-16289 | None:intergenic |
| GAGTTTCTTGTGTTTATGTA+AGG | 0.427897 | tig0032628:+16369 | Msa1449480:CDS |
| ATGAACAGGTACTAGGTTGA+TGG | 0.445026 | tig0032628:-15544 | None:intergenic |
| TATTGAGGAACTTGATCATA+AGG | 0.446946 | tig0032628:-16241 | None:intergenic |
| AATAAACACAATAGCTCAAG+TGG | 0.451741 | tig0032628:-17080 | None:intergenic |
| TTTGGAGCACTTGGAATTGG+AGG | 0.470180 | tig0032628:+16925 | Msa1449480:CDS |
| TCTTCACAGTTCCACATGAA+TGG | 0.472468 | tig0032628:-15884 | None:intergenic |
| AATTTCACTACTCATTGTAA+TGG | 0.476094 | tig0032628:+16397 | Msa1449480:CDS |
| ATATAGCTAACATTATGAAT+AGG | 0.481905 | tig0032628:-15836 | None:intergenic |
| TCTAAACTAAATGGTCTTGT+TGG | 0.485018 | tig0032628:-15923 | None:intergenic |
| GACGCGGTGTCTTCAATGTC+AGG | 0.485220 | tig0032628:+16297 | Msa1449480:CDS |
| GAGTTCAAAGCAATGAGAAC+AGG | 0.485646 | tig0032628:+16998 | Msa1449480:CDS |
| AGTGTTTATTGGAGAAATGT+TGG | 0.491654 | tig0032628:+16208 | Msa1449480:CDS |
| TTCTTGTGTTTATGTAAGGA+AGG | 0.498390 | tig0032628:+16373 | Msa1449480:CDS |
| GATCAATCCAAAGGTGGTGG+TGG | 0.501256 | tig0032628:+16319 | Msa1449480:CDS |
| TTAGAGATGAATGCATGAAC+AGG | 0.503392 | tig0032628:-15558 | None:intergenic |
| ATGATAATGCAAGGCACAGT+AGG | 0.505376 | tig0032628:+16735 | Msa1449480:CDS |
| TGAATGCATGAACAGGTACT+AGG | 0.510280 | tig0032628:-15551 | None:intergenic |
| AAAAGGATATTGGATTGGAA+TGG | 0.522600 | tig0032628:-15717 | None:intergenic |
| GGAGCACTTGGAATTGGAGG+TGG | 0.523403 | tig0032628:+16928 | Msa1449480:CDS |
| TGGGCTAAGAAAGTAACAAA+AGG | 0.540969 | tig0032628:-17060 | None:intergenic |
| ACTTCCACAACCATCATCAA+TGG | 0.544706 | tig0032628:-15741 | None:intergenic |
| ACATGAAGTTCTACAAAGGA+TGG | 0.551498 | tig0032628:-15690 | None:intergenic |
| TATTTATTTATACAATTATG+GGG | 0.552961 | tig0032628:+17099 | Msa1449480:three_prime_UTR |
| TATGGGGCCTCTCTTACTCA+GGG | 0.553640 | tig0032628:+17115 | Msa1449480:three_prime_UTR |
| ATCCTTTGTAGAACTTCATG+TGG | 0.569230 | tig0032628:+15692 | Msa1449480:CDS |
| AAAGGTGGTGGTGGAACTTG+TGG | 0.581771 | tig0032628:+16328 | Msa1449480:CDS |
| CAGGATCAATCCAAAGGTGG+TGG | 0.583668 | tig0032628:+16316 | Msa1449480:CDS |
| TCAACTCTAATCCCATATTG+AGG | 0.585217 | tig0032628:-16256 | None:intergenic |
| GGAAATTGTTCACAAAACAC+AGG | 0.597733 | tig0032628:-16031 | None:intergenic |
| TAGTCACCGATCCATTCATG+TGG | 0.610507 | tig0032628:+15873 | Msa1449480:CDS |
| ACAGTTCCACATGAATGGAT+CGG | 0.611522 | tig0032628:-15879 | None:intergenic |
| TGGGGCCTCTCTTACTCAGG+GGG | 0.613293 | tig0032628:+17117 | Msa1449480:three_prime_UTR |
| TTGATATTCCAGTGACGACG+CGG | 0.620201 | tig0032628:+16281 | Msa1449480:CDS |
| TGGCAGATCATGATAATGCA+AGG | 0.621886 | tig0032628:+16726 | Msa1449480:intron |
| TGAATAGGATATCTTCCAGA+AGG | 0.622548 | tig0032628:-15821 | None:intergenic |
| GGAACTTGATCATAAGGCTG+AGG | 0.624162 | tig0032628:-16235 | None:intergenic |
| TTTCATAAGCTATCCCGAAG+AGG | 0.630000 | tig0032628:-17262 | None:intergenic |
| GCTAAAGAACCAGTAACATG+TGG | 0.630947 | tig0032628:+16976 | Msa1449480:CDS |
| CTCATAGCAAAAGAACACTC+TGG | 0.643337 | tig0032628:-16106 | None:intergenic |
| CAATGTCAGGATCAATCCAA+AGG | 0.643953 | tig0032628:+16310 | Msa1449480:CDS |
| GGATCGGTGACTAAAATGTG+TGG | 0.665773 | tig0032628:-15863 | None:intergenic |
| TTCATGTGGAACTGTGAAGA+CGG | 0.666043 | tig0032628:+15887 | Msa1449480:CDS |
| ATAAACACAATAGCTCAAGT+GGG | 0.669427 | tig0032628:-17079 | None:intergenic |
| TGTCAGGATCAATCCAAAGG+TGG | 0.681857 | tig0032628:+16313 | Msa1449480:CDS |
| AACCACATGAAGTTCTACAA+AGG | 0.693483 | tig0032628:-15694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTGAATTAATTTAAT+TGG | + | tig0032628:16689-16708 | Msa1449480:intron | 10.0% |
| !! | TATTTATTTATACAATTATG+GGG | + | tig0032628:17099-17118 | Msa1449480:three_prime_UTR | 10.0% |
| !!! | TGATTTTGAATTAATTTAAT+TGG | + | tig0032628:16689-16708 | Msa1449480:intron | 10.0% |
| !! | TATTTATTTATACAATTATG+GGG | + | tig0032628:17099-17118 | Msa1449480:three_prime_UTR | 10.0% |
| !!! | ATTATTGATAGTAATAAGAT+TGG | - | tig0032628:15629-15648 | None:intergenic | 15.0% |
| !!! | TACTTTTTTAATCATGTTAT+TGG | + | tig0032628:16485-16504 | Msa1449480:intron | 15.0% |
| !! | AATTGGATTTATTATTTGTT+TGG | + | tig0032628:16706-16725 | Msa1449480:intron | 15.0% |
| !!! | ATTATTGATAGTAATAAGAT+TGG | - | tig0032628:15629-15648 | None:intergenic | 15.0% |
| !!! | TACTTTTTTAATCATGTTAT+TGG | + | tig0032628:16485-16504 | Msa1449480:intron | 15.0% |
| !! | AATTGGATTTATTATTTGTT+TGG | + | tig0032628:16706-16725 | Msa1449480:intron | 15.0% |
| !!! | TAAGATTGGTTTTTGTTTTT+GGG | - | tig0032628:15615-15634 | None:intergenic | 20.0% |
| !!! | ATAAGATTGGTTTTTGTTTT+TGG | - | tig0032628:15616-15635 | None:intergenic | 20.0% |
| !! | ATATAGCTAACATTATGAAT+AGG | - | tig0032628:15839-15858 | None:intergenic | 20.0% |
| !!! | AACTATTGAGTAACAATTTT+TGG | + | tig0032628:16665-16684 | Msa1449480:intron | 20.0% |
| !!! | TAAGATTGGTTTTTGTTTTT+GGG | - | tig0032628:15615-15634 | None:intergenic | 20.0% |
| !!! | ATAAGATTGGTTTTTGTTTT+TGG | - | tig0032628:15616-15635 | None:intergenic | 20.0% |
| !! | ATATAGCTAACATTATGAAT+AGG | - | tig0032628:15839-15858 | None:intergenic | 20.0% |
| !!! | AACTATTGAGTAACAATTTT+TGG | + | tig0032628:16665-16684 | Msa1449480:intron | 20.0% |
| ! | GAAAGAATGAATCTGTAATA+TGG | - | tig0032628:15767-15786 | None:intergenic | 25.0% |
| ! | AATTTCACTACTCATTGTAA+TGG | + | tig0032628:16397-16416 | Msa1449480:CDS | 25.0% |
| ! | TCACAATCACAAGATAAAAT+AGG | - | tig0032628:16444-16463 | None:intergenic | 25.0% |
| ! | TAATTAACATTCACAAAGTC+AGG | + | tig0032628:16808-16827 | Msa1449480:intron | 25.0% |
| ! | AATTAACATTCACAAAGTCA+GGG | + | tig0032628:16809-16828 | Msa1449480:intron | 25.0% |
| !!! | GGTTTTTGAAGTTGAAAATT+AGG | + | tig0032628:16830-16849 | Msa1449480:intron | 25.0% |
| ! | GTAACAAAAGGAAAAATGTA+TGG | - | tig0032628:17051-17070 | None:intergenic | 25.0% |
| ! | GAAAGAATGAATCTGTAATA+TGG | - | tig0032628:15767-15786 | None:intergenic | 25.0% |
| ! | AATTTCACTACTCATTGTAA+TGG | + | tig0032628:16397-16416 | Msa1449480:CDS | 25.0% |
| ! | TCACAATCACAAGATAAAAT+AGG | - | tig0032628:16444-16463 | None:intergenic | 25.0% |
| ! | TAATTAACATTCACAAAGTC+AGG | + | tig0032628:16808-16827 | Msa1449480:intron | 25.0% |
| ! | AATTAACATTCACAAAGTCA+GGG | + | tig0032628:16809-16828 | Msa1449480:intron | 25.0% |
| !!! | GGTTTTTGAAGTTGAAAATT+AGG | + | tig0032628:16830-16849 | Msa1449480:intron | 25.0% |
| ! | GTAACAAAAGGAAAAATGTA+TGG | - | tig0032628:17051-17070 | None:intergenic | 25.0% |
| !!! | GTTTTTGGGTTATAGTTAGA+TGG | - | tig0032628:15601-15620 | None:intergenic | 30.0% |
| ! | AAAAGGATATTGGATTGGAA+TGG | - | tig0032628:15720-15739 | None:intergenic | 30.0% |
| ATGGAAAAAGGATATTGGAT+TGG | - | tig0032628:15725-15744 | None:intergenic | 30.0% | |
| CATCAATGGAAAAAGGATAT+TGG | - | tig0032628:15730-15749 | None:intergenic | 30.0% | |
| ! | TATCCTTTTTCCATTGATGA+TGG | + | tig0032628:15731-15750 | Msa1449480:CDS | 30.0% |
| !! | TCTAAACTAAATGGTCTTGT+TGG | - | tig0032628:15926-15945 | None:intergenic | 30.0% |
| CAAGTTATGCTAGTGTTTAT+TGG | + | tig0032628:16197-16216 | Msa1449480:CDS | 30.0% | |
| AGTGTTTATTGGAGAAATGT+TGG | + | tig0032628:16208-16227 | Msa1449480:CDS | 30.0% | |
| TATTGAGGAACTTGATCATA+AGG | - | tig0032628:16244-16263 | None:intergenic | 30.0% | |
| TATGATCAAGTTCCTCAATA+TGG | + | tig0032628:16244-16263 | Msa1449480:CDS | 30.0% | |
| ATGATCAAGTTCCTCAATAT+GGG | + | tig0032628:16245-16264 | Msa1449480:CDS | 30.0% | |
| GAGTTTCTTGTGTTTATGTA+AGG | + | tig0032628:16369-16388 | Msa1449480:CDS | 30.0% | |
| TTCTTGTGTTTATGTAAGGA+AGG | + | tig0032628:16373-16392 | Msa1449480:CDS | 30.0% | |
| TTATCTTGTGATTGTGACTT+AGG | + | tig0032628:16447-16466 | Msa1449480:intron | 30.0% | |
| GAAAATTAGGCTTATGTTTG+TGG | + | tig0032628:16843-16862 | Msa1449480:intron | 30.0% | |
| AAAAATGTATGGTATGTGGT+TGG | - | tig0032628:17040-17059 | None:intergenic | 30.0% | |
| AAGGAAAAATGTATGGTATG+TGG | - | tig0032628:17044-17063 | None:intergenic | 30.0% | |
| ATAAACACAATAGCTCAAGT+GGG | - | tig0032628:17082-17101 | None:intergenic | 30.0% | |
| AATAAACACAATAGCTCAAG+TGG | - | tig0032628:17083-17102 | None:intergenic | 30.0% | |
| !! | CTTATTTTTCGTAACCTCTT+CGG | + | tig0032628:17248-17267 | Msa1449480:three_prime_UTR | 30.0% |
| !! | TTATTTTTCGTAACCTCTTC+GGG | + | tig0032628:17249-17268 | Msa1449480:three_prime_UTR | 30.0% |
| !!! | GTTTTTGGGTTATAGTTAGA+TGG | - | tig0032628:15601-15620 | None:intergenic | 30.0% |
| ! | AAAAGGATATTGGATTGGAA+TGG | - | tig0032628:15720-15739 | None:intergenic | 30.0% |
| ATGGAAAAAGGATATTGGAT+TGG | - | tig0032628:15725-15744 | None:intergenic | 30.0% | |
| CATCAATGGAAAAAGGATAT+TGG | - | tig0032628:15730-15749 | None:intergenic | 30.0% | |
| ! | TATCCTTTTTCCATTGATGA+TGG | + | tig0032628:15731-15750 | Msa1449480:CDS | 30.0% |
| !! | TCTAAACTAAATGGTCTTGT+TGG | - | tig0032628:15926-15945 | None:intergenic | 30.0% |
| CAAGTTATGCTAGTGTTTAT+TGG | + | tig0032628:16197-16216 | Msa1449480:CDS | 30.0% | |
| AGTGTTTATTGGAGAAATGT+TGG | + | tig0032628:16208-16227 | Msa1449480:CDS | 30.0% | |
| TATTGAGGAACTTGATCATA+AGG | - | tig0032628:16244-16263 | None:intergenic | 30.0% | |
| TATGATCAAGTTCCTCAATA+TGG | + | tig0032628:16244-16263 | Msa1449480:CDS | 30.0% | |
| ATGATCAAGTTCCTCAATAT+GGG | + | tig0032628:16245-16264 | Msa1449480:CDS | 30.0% | |
| GAGTTTCTTGTGTTTATGTA+AGG | + | tig0032628:16369-16388 | Msa1449480:CDS | 30.0% | |
| TTCTTGTGTTTATGTAAGGA+AGG | + | tig0032628:16373-16392 | Msa1449480:CDS | 30.0% | |
| TTATCTTGTGATTGTGACTT+AGG | + | tig0032628:16447-16466 | Msa1449480:intron | 30.0% | |
| GAAAATTAGGCTTATGTTTG+TGG | + | tig0032628:16843-16862 | Msa1449480:intron | 30.0% | |
| AAAAATGTATGGTATGTGGT+TGG | - | tig0032628:17040-17059 | None:intergenic | 30.0% | |
| AAGGAAAAATGTATGGTATG+TGG | - | tig0032628:17044-17063 | None:intergenic | 30.0% | |
| ATAAACACAATAGCTCAAGT+GGG | - | tig0032628:17082-17101 | None:intergenic | 30.0% | |
| AATAAACACAATAGCTCAAG+TGG | - | tig0032628:17083-17102 | None:intergenic | 30.0% | |
| !! | CTTATTTTTCGTAACCTCTT+CGG | + | tig0032628:17248-17267 | Msa1449480:three_prime_UTR | 30.0% |
| TTAGAGATGAATGCATGAAC+AGG | - | tig0032628:15561-15580 | None:intergenic | 35.0% | |
| ! | GGATTGAGATTTTGTGAGAA+TGG | - | tig0032628:15672-15691 | None:intergenic | 35.0% |
| ACATGAAGTTCTACAAAGGA+TGG | - | tig0032628:15693-15712 | None:intergenic | 35.0% | |
| ATCCTTTGTAGAACTTCATG+TGG | + | tig0032628:15692-15711 | Msa1449480:CDS | 35.0% | |
| AACCACATGAAGTTCTACAA+AGG | - | tig0032628:15697-15716 | None:intergenic | 35.0% | |
| CAACCATCATCAATGGAAAA+AGG | - | tig0032628:15737-15756 | None:intergenic | 35.0% | |
| !!! | TTTTCCATTGATGATGGTTG+TGG | + | tig0032628:15737-15756 | Msa1449480:CDS | 35.0% |
| TGAATAGGATATCTTCCAGA+AGG | - | tig0032628:15824-15843 | None:intergenic | 35.0% | |
| GTGCTTGTGTCTAAACTAAA+TGG | - | tig0032628:15935-15954 | None:intergenic | 35.0% | |
| GGAAATTGTTCACAAAACAC+AGG | - | tig0032628:16034-16053 | None:intergenic | 35.0% | |
| CTCAAAGATTCAGTAGCTTT+AGG | - | tig0032628:16157-16176 | None:intergenic | 35.0% | |
| CTAAAGCTACTGAATCTTTG+AGG | + | tig0032628:16155-16174 | Msa1449480:CDS | 35.0% | |
| TCAACTCTAATCCCATATTG+AGG | - | tig0032628:16259-16278 | None:intergenic | 35.0% | |
| ACTTGGATGATTACCTTTAG+TGG | + | tig0032628:16524-16543 | Msa1449480:intron | 35.0% | |
| CTTGGATGATTACCTTTAGT+GGG | + | tig0032628:16525-16544 | Msa1449480:intron | 35.0% | |
| TTGGATGATTACCTTTAGTG+GGG | + | tig0032628:16526-16545 | Msa1449480:intron | 35.0% | |
| TATGTTAGTACGAGTGAAAC+TGG | - | tig0032628:16621-16640 | None:intergenic | 35.0% | |
| CACTCGTACTAACATAGTAT+TGG | + | tig0032628:16625-16644 | Msa1449480:intron | 35.0% | |
| !! | CGTACTAACATAGTATTGGT+AGG | + | tig0032628:16629-16648 | Msa1449480:intron | 35.0% |
| TTCAATCACCTGCAATTACA+TGG | - | tig0032628:16766-16785 | None:intergenic | 35.0% | |
| !! | TTTGTGGTTTTGCTTTGTGT+TGG | + | tig0032628:16859-16878 | Msa1449480:intron | 35.0% |
| ! | GTTTTGCTTTGTGTTGGATT+TGG | + | tig0032628:16865-16884 | Msa1449480:intron | 35.0% |
| ! | TTGTGTTGGATTTGGAATTC+TGG | + | tig0032628:16873-16892 | Msa1449480:intron | 35.0% |
| !!! | GTTACTGCTATTTCAGCTTT+TGG | + | tig0032628:16907-16926 | Msa1449480:CDS | 35.0% |
| TGGGCTAAGAAAGTAACAAA+AGG | - | tig0032628:17063-17082 | None:intergenic | 35.0% | |
| TTAGAGATGAATGCATGAAC+AGG | - | tig0032628:15561-15580 | None:intergenic | 35.0% | |
| ! | GGATTGAGATTTTGTGAGAA+TGG | - | tig0032628:15672-15691 | None:intergenic | 35.0% |
| ACATGAAGTTCTACAAAGGA+TGG | - | tig0032628:15693-15712 | None:intergenic | 35.0% | |
| ATCCTTTGTAGAACTTCATG+TGG | + | tig0032628:15692-15711 | Msa1449480:CDS | 35.0% | |
| AACCACATGAAGTTCTACAA+AGG | - | tig0032628:15697-15716 | None:intergenic | 35.0% | |
| CAACCATCATCAATGGAAAA+AGG | - | tig0032628:15737-15756 | None:intergenic | 35.0% | |
| !!! | TTTTCCATTGATGATGGTTG+TGG | + | tig0032628:15737-15756 | Msa1449480:CDS | 35.0% |
| TGAATAGGATATCTTCCAGA+AGG | - | tig0032628:15824-15843 | None:intergenic | 35.0% | |
| GTGCTTGTGTCTAAACTAAA+TGG | - | tig0032628:15935-15954 | None:intergenic | 35.0% | |
| GGAAATTGTTCACAAAACAC+AGG | - | tig0032628:16034-16053 | None:intergenic | 35.0% | |
| CTCAAAGATTCAGTAGCTTT+AGG | - | tig0032628:16157-16176 | None:intergenic | 35.0% | |
| CTAAAGCTACTGAATCTTTG+AGG | + | tig0032628:16155-16174 | Msa1449480:CDS | 35.0% | |
| TCAACTCTAATCCCATATTG+AGG | - | tig0032628:16259-16278 | None:intergenic | 35.0% | |
| ACTTGGATGATTACCTTTAG+TGG | + | tig0032628:16524-16543 | Msa1449480:intron | 35.0% | |
| CTTGGATGATTACCTTTAGT+GGG | + | tig0032628:16525-16544 | Msa1449480:intron | 35.0% | |
| TTGGATGATTACCTTTAGTG+GGG | + | tig0032628:16526-16545 | Msa1449480:intron | 35.0% | |
| TATGTTAGTACGAGTGAAAC+TGG | - | tig0032628:16621-16640 | None:intergenic | 35.0% | |
| CACTCGTACTAACATAGTAT+TGG | + | tig0032628:16625-16644 | Msa1449480:intron | 35.0% | |
| !! | CGTACTAACATAGTATTGGT+AGG | + | tig0032628:16629-16648 | Msa1449480:intron | 35.0% |
| TTCAATCACCTGCAATTACA+TGG | - | tig0032628:16766-16785 | None:intergenic | 35.0% | |
| !! | TTTGTGGTTTTGCTTTGTGT+TGG | + | tig0032628:16859-16878 | Msa1449480:intron | 35.0% |
| ! | GTTTTGCTTTGTGTTGGATT+TGG | + | tig0032628:16865-16884 | Msa1449480:intron | 35.0% |
| ! | TTGTGTTGGATTTGGAATTC+TGG | + | tig0032628:16873-16892 | Msa1449480:intron | 35.0% |
| !!! | GTTACTGCTATTTCAGCTTT+TGG | + | tig0032628:16907-16926 | Msa1449480:CDS | 35.0% |
| TGGGCTAAGAAAGTAACAAA+AGG | - | tig0032628:17063-17082 | None:intergenic | 35.0% | |
| ! | ATGAACAGGTACTAGGTTGA+TGG | - | tig0032628:15547-15566 | None:intergenic | 40.0% |
| TGAATGCATGAACAGGTACT+AGG | - | tig0032628:15554-15573 | None:intergenic | 40.0% | |
| ACTTCCACAACCATCATCAA+TGG | - | tig0032628:15744-15763 | None:intergenic | 40.0% | |
| CTTGAACTAAGAACACCTTC+TGG | + | tig0032628:15806-15825 | Msa1449480:CDS | 40.0% | |
| ACAGTTCCACATGAATGGAT+CGG | - | tig0032628:15882-15901 | None:intergenic | 40.0% | |
| TCTTCACAGTTCCACATGAA+TGG | - | tig0032628:15887-15906 | None:intergenic | 40.0% | |
| TTCATGTGGAACTGTGAAGA+CGG | + | tig0032628:15887-15906 | Msa1449480:CDS | 40.0% | |
| TGTTCACAAAACACAGGCTT+TGG | - | tig0032628:16028-16047 | None:intergenic | 40.0% | |
| CAAGATGAATCACAGTGTTC+AGG | - | tig0032628:16055-16074 | None:intergenic | 40.0% | |
| CTCATAGCAAAAGAACACTC+TGG | - | tig0032628:16109-16128 | None:intergenic | 40.0% | |
| !! | GAGTGTTCTTTTGCTATGAG+TGG | + | tig0032628:16109-16128 | Msa1449480:CDS | 40.0% |
| CAATGTCAGGATCAATCCAA+AGG | + | tig0032628:16310-16329 | Msa1449480:CDS | 40.0% | |
| ! | GTGCAAAGTATCTATCGACT+TGG | + | tig0032628:16507-16526 | Msa1449480:intron | 40.0% |
| ! | GATTACCTTTAGTGGGGTTT+TGG | + | tig0032628:16532-16551 | Msa1449480:intron | 40.0% |
| AAGTTCCAAAACCCCACTAA+AGG | - | tig0032628:16540-16559 | None:intergenic | 40.0% | |
| GAACCTCAGATCTTGCTTAA+GGG | + | tig0032628:16587-16606 | Msa1449480:intron | 40.0% | |
| ! | TGGCAGATCATGATAATGCA+AGG | + | tig0032628:16726-16745 | Msa1449480:intron | 40.0% |
| ! | ATGATAATGCAAGGCACAGT+AGG | + | tig0032628:16735-16754 | Msa1449480:CDS | 40.0% |
| AGGAATGTCCATGTAATTGC+AGG | + | tig0032628:16755-16774 | Msa1449480:CDS | 40.0% | |
| !!! | ATTTCAGCTTTTGGAGCACT+TGG | + | tig0032628:16916-16935 | Msa1449480:CDS | 40.0% |
| TTGGAATTGGAGGTGGTATT+TGG | + | tig0032628:16935-16954 | Msa1449480:CDS | 40.0% | |
| GCTAAAGAACCAGTAACATG+TGG | + | tig0032628:16976-16995 | Msa1449480:CDS | 40.0% | |
| CTTTGAACTCCACATGTTAC+TGG | - | tig0032628:16988-17007 | None:intergenic | 40.0% | |
| GAGTTCAAAGCAATGAGAAC+AGG | + | tig0032628:16998-17017 | Msa1449480:CDS | 40.0% | |
| ! | ATGAACAGGTACTAGGTTGA+TGG | - | tig0032628:15547-15566 | None:intergenic | 40.0% |
| TGAATGCATGAACAGGTACT+AGG | - | tig0032628:15554-15573 | None:intergenic | 40.0% | |
| ACTTCCACAACCATCATCAA+TGG | - | tig0032628:15744-15763 | None:intergenic | 40.0% | |
| CTTGAACTAAGAACACCTTC+TGG | + | tig0032628:15806-15825 | Msa1449480:CDS | 40.0% | |
| ACAGTTCCACATGAATGGAT+CGG | - | tig0032628:15882-15901 | None:intergenic | 40.0% | |
| TCTTCACAGTTCCACATGAA+TGG | - | tig0032628:15887-15906 | None:intergenic | 40.0% | |
| TTCATGTGGAACTGTGAAGA+CGG | + | tig0032628:15887-15906 | Msa1449480:CDS | 40.0% | |
| TGTTCACAAAACACAGGCTT+TGG | - | tig0032628:16028-16047 | None:intergenic | 40.0% | |
| CAAGATGAATCACAGTGTTC+AGG | - | tig0032628:16055-16074 | None:intergenic | 40.0% | |
| CTCATAGCAAAAGAACACTC+TGG | - | tig0032628:16109-16128 | None:intergenic | 40.0% | |
| !! | GAGTGTTCTTTTGCTATGAG+TGG | + | tig0032628:16109-16128 | Msa1449480:CDS | 40.0% |
| CAATGTCAGGATCAATCCAA+AGG | + | tig0032628:16310-16329 | Msa1449480:CDS | 40.0% | |
| ! | GTGCAAAGTATCTATCGACT+TGG | + | tig0032628:16507-16526 | Msa1449480:intron | 40.0% |
| ! | GATTACCTTTAGTGGGGTTT+TGG | + | tig0032628:16532-16551 | Msa1449480:intron | 40.0% |
| AAGTTCCAAAACCCCACTAA+AGG | - | tig0032628:16540-16559 | None:intergenic | 40.0% | |
| GAACCTCAGATCTTGCTTAA+GGG | + | tig0032628:16587-16606 | Msa1449480:intron | 40.0% | |
| ! | TGGCAGATCATGATAATGCA+AGG | + | tig0032628:16726-16745 | Msa1449480:intron | 40.0% |
| ! | ATGATAATGCAAGGCACAGT+AGG | + | tig0032628:16735-16754 | Msa1449480:CDS | 40.0% |
| AGGAATGTCCATGTAATTGC+AGG | + | tig0032628:16755-16774 | Msa1449480:CDS | 40.0% | |
| !!! | ATTTCAGCTTTTGGAGCACT+TGG | + | tig0032628:16916-16935 | Msa1449480:CDS | 40.0% |
| TTGGAATTGGAGGTGGTATT+TGG | + | tig0032628:16935-16954 | Msa1449480:CDS | 40.0% | |
| GCTAAAGAACCAGTAACATG+TGG | + | tig0032628:16976-16995 | Msa1449480:CDS | 40.0% | |
| CTTTGAACTCCACATGTTAC+TGG | - | tig0032628:16988-17007 | None:intergenic | 40.0% | |
| GAGTTCAAAGCAATGAGAAC+AGG | + | tig0032628:16998-17017 | Msa1449480:CDS | 40.0% | |
| GGATCGGTGACTAAAATGTG+TGG | - | tig0032628:15866-15885 | None:intergenic | 45.0% | |
| TAGTCACCGATCCATTCATG+TGG | + | tig0032628:15873-15892 | Msa1449480:CDS | 45.0% | |
| GGAACTTGATCATAAGGCTG+AGG | - | tig0032628:16238-16257 | None:intergenic | 45.0% | |
| TTGATATTCCAGTGACGACG+CGG | + | tig0032628:16281-16300 | Msa1449480:CDS | 45.0% | |
| TGTCAGGATCAATCCAAAGG+TGG | + | tig0032628:16313-16332 | Msa1449480:CDS | 45.0% | |
| TGAGGTTCGAACTTTGTCGA+TGG | - | tig0032628:16575-16594 | None:intergenic | 45.0% | |
| CGAACCTCAGATCTTGCTTA+AGG | + | tig0032628:16586-16605 | Msa1449480:intron | 45.0% | |
| GATCCCTTAAGCAAGATCTG+AGG | - | tig0032628:16593-16612 | None:intergenic | 45.0% | |
| ! | GATTTGGAATTCTGGCTGCA+GGG | + | tig0032628:16881-16900 | Msa1449480:intron | 45.0% |
| !!! | GCTTTTGGAGCACTTGGAAT+TGG | + | tig0032628:16922-16941 | Msa1449480:CDS | 45.0% |
| ! | TTTGGAGCACTTGGAATTGG+AGG | + | tig0032628:16925-16944 | Msa1449480:CDS | 45.0% |
| GGATCGGTGACTAAAATGTG+TGG | - | tig0032628:15866-15885 | None:intergenic | 45.0% | |
| TAGTCACCGATCCATTCATG+TGG | + | tig0032628:15873-15892 | Msa1449480:CDS | 45.0% | |
| GGAACTTGATCATAAGGCTG+AGG | - | tig0032628:16238-16257 | None:intergenic | 45.0% | |
| TTGATATTCCAGTGACGACG+CGG | + | tig0032628:16281-16300 | Msa1449480:CDS | 45.0% | |
| TGTCAGGATCAATCCAAAGG+TGG | + | tig0032628:16313-16332 | Msa1449480:CDS | 45.0% | |
| TGAGGTTCGAACTTTGTCGA+TGG | - | tig0032628:16575-16594 | None:intergenic | 45.0% | |
| CGAACCTCAGATCTTGCTTA+AGG | + | tig0032628:16586-16605 | Msa1449480:intron | 45.0% | |
| GATCCCTTAAGCAAGATCTG+AGG | - | tig0032628:16593-16612 | None:intergenic | 45.0% | |
| ! | GATTTGGAATTCTGGCTGCA+GGG | + | tig0032628:16881-16900 | Msa1449480:intron | 45.0% |
| !!! | GCTTTTGGAGCACTTGGAAT+TGG | + | tig0032628:16922-16941 | Msa1449480:CDS | 45.0% |
| ! | TTTGGAGCACTTGGAATTGG+AGG | + | tig0032628:16925-16944 | Msa1449480:CDS | 45.0% |
| !! | TTTATTTATTTATACAATTA+TGG | + | tig0032628:17097-17116 | Msa1449480:three_prime_UTR | 5.0% |
| !! | TTATTTATTTATACAATTAT+GGG | + | tig0032628:17098-17117 | Msa1449480:three_prime_UTR | 5.0% |
| !! | TTTATTTATTTATACAATTA+TGG | + | tig0032628:17097-17116 | Msa1449480:three_prime_UTR | 5.0% |
| !! | TTATTTATTTATACAATTAT+GGG | + | tig0032628:17098-17117 | Msa1449480:three_prime_UTR | 5.0% |
| CAGGATCAATCCAAAGGTGG+TGG | + | tig0032628:16316-16335 | Msa1449480:CDS | 50.0% | |
| ! | GATCAATCCAAAGGTGGTGG+TGG | + | tig0032628:16319-16338 | Msa1449480:CDS | 50.0% |
| ACAAGTTCCACCACCACCTT+TGG | - | tig0032628:16329-16348 | None:intergenic | 50.0% | |
| !! | AAAGGTGGTGGTGGAACTTG+TGG | + | tig0032628:16328-16347 | Msa1449480:CDS | 50.0% |
| ! | GGATTTGGAATTCTGGCTGC+AGG | + | tig0032628:16880-16899 | Msa1449480:intron | 50.0% |
| TTATGGGGCCTCTCTTACTC+AGG | + | tig0032628:17114-17133 | Msa1449480:three_prime_UTR | 50.0% | |
| TATGGGGCCTCTCTTACTCA+GGG | + | tig0032628:17115-17134 | Msa1449480:three_prime_UTR | 50.0% | |
| !!! | CTCAGGGGGCATGTTTTGAT+TGG | + | tig0032628:17131-17150 | Msa1449480:three_prime_UTR | 50.0% |
| CAGGATCAATCCAAAGGTGG+TGG | + | tig0032628:16316-16335 | Msa1449480:CDS | 50.0% | |
| ! | GATCAATCCAAAGGTGGTGG+TGG | + | tig0032628:16319-16338 | Msa1449480:CDS | 50.0% |
| ACAAGTTCCACCACCACCTT+TGG | - | tig0032628:16329-16348 | None:intergenic | 50.0% | |
| !! | AAAGGTGGTGGTGGAACTTG+TGG | + | tig0032628:16328-16347 | Msa1449480:CDS | 50.0% |
| ! | GGATTTGGAATTCTGGCTGC+AGG | + | tig0032628:16880-16899 | Msa1449480:intron | 50.0% |
| TTATGGGGCCTCTCTTACTC+AGG | + | tig0032628:17114-17133 | Msa1449480:three_prime_UTR | 50.0% | |
| TATGGGGCCTCTCTTACTCA+GGG | + | tig0032628:17115-17134 | Msa1449480:three_prime_UTR | 50.0% | |
| !!! | CTCAGGGGGCATGTTTTGAT+TGG | + | tig0032628:17131-17150 | Msa1449480:three_prime_UTR | 50.0% |
| GACGCGGTGTCTTCAATGTC+AGG | + | tig0032628:16297-16316 | Msa1449480:CDS | 55.0% | |
| ! | GGAGCACTTGGAATTGGAGG+TGG | + | tig0032628:16928-16947 | Msa1449480:CDS | 55.0% |
| ATGGGGCCTCTCTTACTCAG+GGG | + | tig0032628:17116-17135 | Msa1449480:three_prime_UTR | 55.0% | |
| ACATGCCCCCTGAGTAAGAG+AGG | - | tig0032628:17125-17144 | None:intergenic | 55.0% | |
| GACGCGGTGTCTTCAATGTC+AGG | + | tig0032628:16297-16316 | Msa1449480:CDS | 55.0% | |
| ! | GGAGCACTTGGAATTGGAGG+TGG | + | tig0032628:16928-16947 | Msa1449480:CDS | 55.0% |
| ATGGGGCCTCTCTTACTCAG+GGG | + | tig0032628:17116-17135 | Msa1449480:three_prime_UTR | 55.0% | |
| ACATGCCCCCTGAGTAAGAG+AGG | - | tig0032628:17125-17144 | None:intergenic | 55.0% | |
| TGAAGACACCGCGTCGTCAC+TGG | - | tig0032628:16292-16311 | None:intergenic | 60.0% | |
| TGGGGCCTCTCTTACTCAGG+GGG | + | tig0032628:17117-17136 | Msa1449480:three_prime_UTR | 60.0% | |
| TGAAGACACCGCGTCGTCAC+TGG | - | tig0032628:16292-16311 | None:intergenic | 60.0% | |
| TGGGGCCTCTCTTACTCAGG+GGG | + | tig0032628:17117-17136 | Msa1449480:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032628 | gene | 15529 | 17271 | 15529 | ID=Msa1449480;Name=Msa1449480 |
| tig0032628 | mRNA | 15529 | 17271 | 15529 | ID=Msa1449480-mRNA-1;Parent=Msa1449480;Name=Msa1449480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|3|242|334 |
| tig0032628 | exon | 15529 | 16418 | 15529 | ID=Msa1449480-mRNA-1:exon:16953;Parent=Msa1449480-mRNA-1 |
| tig0032628 | exon | 16732 | 16776 | 16732 | ID=Msa1449480-mRNA-1:exon:16954;Parent=Msa1449480-mRNA-1 |
| tig0032628 | exon | 16902 | 17271 | 16902 | ID=Msa1449480-mRNA-1:exon:16955;Parent=Msa1449480-mRNA-1 |
| tig0032628 | five_prime_UTR | 15529 | 15586 | 15529 | ID=Msa1449480-mRNA-1:five_prime_utr;Parent=Msa1449480-mRNA-1 |
| tig0032628 | CDS | 15587 | 16418 | 15587 | ID=Msa1449480-mRNA-1:cds;Parent=Msa1449480-mRNA-1 |
| tig0032628 | CDS | 16732 | 16776 | 16732 | ID=Msa1449480-mRNA-1:cds;Parent=Msa1449480-mRNA-1 |
| tig0032628 | CDS | 16902 | 17029 | 16902 | ID=Msa1449480-mRNA-1:cds;Parent=Msa1449480-mRNA-1 |
| tig0032628 | three_prime_UTR | 17030 | 17271 | 17030 | ID=Msa1449480-mRNA-1:three_prime_utr;Parent=Msa1449480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
