Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014990 | GAU44453.1 | 92.810 | 153 | 3 | 1 | 1 | 145 | 1 | 153 | 2.98e-95 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014990 | sp|P46287|RL11_MEDSA | 78.453 | 181 | 4 | 2 | 1 | 146 | 1 | 181 | 1.16e-91 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002370 | Msa0014990 | 0.833294 | 5.792447e-56 | -8.615850e-47 |
| Msa0003890 | Msa0014990 | 0.803234 | 3.841670e-49 | -8.615850e-47 |
| Msa0014990 | Msa0017510 | 0.826083 | 3.295297e-54 | -8.615850e-47 |
| Msa0014990 | Msa0021500 | 0.804952 | 1.687575e-49 | -8.615850e-47 |
| Msa0014990 | Msa0028420 | 0.824096 | 9.712871e-54 | -8.615850e-47 |
| Msa0014990 | Msa0032430 | 0.803561 | 3.286556e-49 | -8.615850e-47 |
| Msa0014990 | Msa0032960 | -0.812099 | 5.026370e-51 | -8.615850e-47 |
| Msa0014990 | Msa0036870 | 0.819137 | 1.359824e-52 | -8.615850e-47 |
| Msa0014990 | Msa0042610 | 0.819072 | 1.407044e-52 | -8.615850e-47 |
| Msa0014990 | Msa0047030 | 0.810251 | 1.264763e-50 | -8.615850e-47 |
| Msa0014990 | Msa0071880 | 0.815035 | 1.136260e-51 | -8.615850e-47 |
| Msa0014990 | Msa0078650 | 0.815760 | 7.837117e-52 | -8.615850e-47 |
| Msa0014990 | Msa0081520 | 0.812926 | 3.315383e-51 | -8.615850e-47 |
| Msa0014990 | Msa0089630 | 0.813685 | 2.258497e-51 | -8.615850e-47 |
| Msa0014990 | Msa0090360 | 0.810143 | 1.334278e-50 | -8.615850e-47 |
| Msa0014990 | Msa0092790 | 0.816518 | 5.307319e-52 | -8.615850e-47 |
| Msa0014990 | Msa0124060 | 0.800710 | 1.268748e-48 | -8.615850e-47 |
| Msa0014990 | Msa0124280 | 0.816753 | 4.700951e-52 | -8.615850e-47 |
| Msa0014990 | Msa0126370 | 0.816752 | 4.702475e-52 | -8.615850e-47 |
| Msa0014990 | Msa0129940 | 0.805778 | 1.132653e-49 | -8.615850e-47 |
| Msa0014990 | Msa0157290 | 0.826291 | 2.940752e-54 | -8.615850e-47 |
| Msa0014990 | Msa0168500 | 0.805722 | 1.163886e-49 | -8.615850e-47 |
| Msa0014990 | Msa0175730 | 0.802004 | 6.891973e-49 | -8.615850e-47 |
| Msa0014990 | Msa0184040 | 0.801090 | 1.061042e-48 | -8.615850e-47 |
| Msa0014990 | Msa0211150 | 0.819840 | 9.403833e-53 | -8.615850e-47 |
| Msa0014990 | Msa0223080 | 0.835421 | 1.694983e-56 | -8.615850e-47 |
| Msa0014990 | Msa0225100 | 0.828163 | 1.047449e-54 | -8.615850e-47 |
| Msa0014990 | Msa0225740 | 0.800161 | 1.641154e-48 | -8.615850e-47 |
| Msa0014990 | Msa0229230 | 0.831048 | 2.081315e-55 | -8.615850e-47 |
| Msa0014990 | Msa0255090 | 0.804870 | 1.755406e-49 | -8.615850e-47 |
| Msa0014990 | Msa0257460 | 0.810053 | 1.395788e-50 | -8.615850e-47 |
| Msa0014990 | Msa0261340 | 0.803694 | 3.084229e-49 | -8.615850e-47 |
| Msa0014990 | Msa0270320 | 0.801047 | 1.082486e-48 | -8.615850e-47 |
| Msa0014990 | Msa0277180 | 0.826556 | 2.542591e-54 | -8.615850e-47 |
| Msa0014990 | Msa0287740 | 0.824683 | 7.067025e-54 | -8.615850e-47 |
| Msa0014990 | Msa0302160 | 0.832196 | 1.085101e-55 | -8.615850e-47 |
| Msa0014990 | Msa0302170 | 0.800557 | 1.363011e-48 | -8.615850e-47 |
| Msa0014990 | Msa0323270 | 0.807290 | 5.433349e-50 | -8.615850e-47 |
| Msa0014990 | Msa0339490 | 0.827599 | 1.431645e-54 | -8.615850e-47 |
| Msa0014990 | Msa0339500 | 0.823557 | 1.299012e-53 | -8.615850e-47 |
| Msa0014990 | Msa0371170 | 0.811223 | 7.795708e-51 | -8.615850e-47 |
| Msa0014990 | Msa0376350 | 0.807008 | 6.233455e-50 | -8.615850e-47 |
| Msa0014990 | Msa0379770 | 0.800609 | 1.330248e-48 | -8.615850e-47 |
| Msa0014990 | Msa0395820 | 0.802344 | 5.865345e-49 | -8.615850e-47 |
| Msa0014990 | Msa0402650 | 0.803634 | 3.175211e-49 | -8.615850e-47 |
| Msa0014990 | Msa0403950 | 0.800117 | 1.675115e-48 | -8.615850e-47 |
| Msa0014990 | Msa0403970 | 0.804291 | 2.317874e-49 | -8.615850e-47 |
| Msa0014990 | Msa0410650 | 0.815321 | 9.816570e-52 | -8.615850e-47 |
| Msa0014990 | Msa0411160 | 0.809484 | 1.849541e-50 | -8.615850e-47 |
| Msa0014990 | Msa0411190 | 0.817671 | 2.922695e-52 | -8.615850e-47 |
| Msa0014990 | Msa0417880 | 0.804242 | 2.372598e-49 | -8.615850e-47 |
| Msa0014990 | Msa0424790 | 0.817841 | 2.674473e-52 | -8.615850e-47 |
| Msa0014990 | Msa0428590 | 0.801213 | 1.001098e-48 | -8.615850e-47 |
| Msa0014990 | Msa0464380 | 0.800842 | 1.192193e-48 | -8.615850e-47 |
| Msa0014990 | Msa0479170 | 0.815252 | 1.016790e-51 | -8.615850e-47 |
| Msa0014990 | Msa0481530 | 0.815981 | 6.995274e-52 | -8.615850e-47 |
| Msa0014990 | Msa0507680 | 0.814650 | 1.382798e-51 | -8.615850e-47 |
| Msa0014990 | Msa0516170 | 0.807881 | 4.070857e-50 | -8.615850e-47 |
| Msa0014990 | Msa0523270 | 0.800201 | 1.610429e-48 | -8.615850e-47 |
| Msa0014990 | Msa0529890 | 0.821509 | 3.887678e-53 | -8.615850e-47 |
| Msa0014990 | Msa0530780 | 0.801060 | 1.076080e-48 | -8.615850e-47 |
| Msa0014990 | Msa0531180 | 0.838875 | 2.217697e-57 | -8.615850e-47 |
| Msa0014990 | Msa0532070 | 0.819276 | 1.264475e-52 | -8.615850e-47 |
| Msa0014990 | Msa0546680 | 0.812189 | 4.804200e-51 | -8.615850e-47 |
| Msa0014990 | Msa0557070 | 0.810805 | 9.604257e-51 | -8.615850e-47 |
| Msa0014990 | Msa0569200 | 0.837940 | 3.864645e-57 | -8.615850e-47 |
| Msa0014990 | Msa0580370 | 0.811655 | 6.279003e-51 | -8.615850e-47 |
| Msa0014990 | Msa0585560 | 0.815400 | 9.425377e-52 | -8.615850e-47 |
| Msa0014990 | Msa0589510 | 0.803648 | 3.152765e-49 | -8.615850e-47 |
| Msa0014990 | Msa0607050 | 0.823452 | 1.374556e-53 | -8.615850e-47 |
| Msa0014990 | Msa0625720 | 0.820313 | 7.325357e-53 | -8.615850e-47 |
| Msa0014990 | Msa0626450 | 0.806145 | 9.480684e-50 | -8.615850e-47 |
| Msa0014990 | Msa0626490 | 0.802304 | 5.977499e-49 | -8.615850e-47 |
| Msa0014990 | Msa0662500 | 0.807560 | 4.762963e-50 | -8.615850e-47 |
| Msa0014990 | Msa0663390 | 0.820243 | 7.603424e-53 | -8.615850e-47 |
| Msa0014990 | Msa0682330 | 0.805225 | 1.479174e-49 | -8.615850e-47 |
| Msa0014990 | Msa0690150 | 0.827651 | 1.390738e-54 | -8.615850e-47 |
| Msa0014990 | Msa0690860 | 0.802862 | 4.586517e-49 | -8.615850e-47 |
| Msa0014990 | Msa0693370 | 0.830274 | 3.221404e-55 | -8.615850e-47 |
| Msa0014990 | Msa0709400 | 0.839971 | 1.151438e-57 | -8.615850e-47 |
| Msa0014990 | Msa0730430 | 0.838090 | 3.534711e-57 | -8.615850e-47 |
| Msa0014990 | Msa0741220 | 0.801955 | 7.052459e-49 | -8.615850e-47 |
| Msa0014990 | Msa0741240 | 0.818570 | 1.830097e-52 | -8.615850e-47 |
| Msa0014990 | Msa0741840 | 0.803644 | 3.159971e-49 | -8.615850e-47 |
| Msa0014990 | Msa0756490 | 0.805651 | 1.204467e-49 | -8.615850e-47 |
| Msa0014990 | Msa0756540 | 0.826323 | 2.889691e-54 | -8.615850e-47 |
| Msa0014990 | Msa0784200 | 0.806085 | 9.763119e-50 | -8.615850e-47 |
| Msa0014990 | Msa0818310 | 0.829531 | 4.886312e-55 | -8.615850e-47 |
| Msa0014990 | Msa0829330 | 0.807421 | 5.096502e-50 | -8.615850e-47 |
| Msa0014990 | Msa0835960 | 0.807405 | 5.137452e-50 | -8.615850e-47 |
| Msa0014990 | Msa0858770 | 0.811395 | 7.154628e-51 | -8.615850e-47 |
| Msa0014990 | Msa0861850 | 0.815655 | 8.272470e-52 | -8.615850e-47 |
| Msa0014990 | Msa0861870 | 0.823747 | 1.172415e-53 | -8.615850e-47 |
| Msa0014990 | Msa0863010 | 0.802308 | 5.965939e-49 | -8.615850e-47 |
| Msa0014990 | Msa0880140 | 0.820934 | 5.276177e-53 | -8.615850e-47 |
| Msa0014990 | Msa0896540 | 0.805180 | 1.511591e-49 | -8.615850e-47 |
| Msa0014990 | Msa0902760 | 0.833550 | 4.999614e-56 | -8.615850e-47 |
| Msa0014990 | Msa0941190 | 0.819978 | 8.743901e-53 | -8.615850e-47 |
| Msa0014990 | Msa0945110 | 0.815484 | 9.029158e-52 | -8.615850e-47 |
| Msa0014990 | Msa0963270 | 0.812619 | 3.870907e-51 | -8.615850e-47 |
| Msa0014990 | Msa0966400 | 0.835782 | 1.372857e-56 | -8.615850e-47 |
| Msa0014990 | Msa0968590 | 0.807710 | 4.424453e-50 | -8.615850e-47 |
| Msa0014990 | Msa0979730 | 0.832848 | 7.477226e-56 | -8.615850e-47 |
| Msa0014990 | Msa0996390 | 0.811215 | 7.827731e-51 | -8.615850e-47 |
| Msa0014990 | Msa1004550 | 0.806306 | 8.768527e-50 | -8.615850e-47 |
| Msa0014990 | Msa1004840 | 0.819647 | 1.040861e-52 | -8.615850e-47 |
| Msa0014990 | Msa1013400 | 0.839068 | 1.976306e-57 | -8.615850e-47 |
| Msa0014990 | Msa1019430 | 0.816516 | 5.311789e-52 | -8.615850e-47 |
| Msa0014990 | Msa1019470 | 0.815881 | 7.367209e-52 | -8.615850e-47 |
| Msa0014990 | Msa1020670 | 0.808000 | 3.838810e-50 | -8.615850e-47 |
| Msa0014990 | Msa1051880 | 0.802999 | 4.296251e-49 | -8.615850e-47 |
| Msa0014990 | Msa1078170 | 0.828686 | 7.833341e-55 | -8.615850e-47 |
| Msa0014990 | Msa1081980 | 0.817677 | 2.913143e-52 | -8.615850e-47 |
| Msa0014990 | Msa1084960 | 0.806940 | 6.445583e-50 | -8.615850e-47 |
| Msa0014990 | Msa1085200 | 0.818239 | 2.174363e-52 | -8.615850e-47 |
| Msa0014990 | Msa1085260 | 0.813531 | 2.442340e-51 | -8.615850e-47 |
| Msa0014990 | Msa1093530 | 0.835046 | 2.107303e-56 | -8.615850e-47 |
| Msa0014990 | Msa1103990 | 0.828017 | 1.135677e-54 | -8.615850e-47 |
| Msa0014990 | Msa1123380 | 0.821740 | 3.438623e-53 | -8.615850e-47 |
| Msa0014990 | Msa1124960 | 0.829875 | 4.030699e-55 | -8.615850e-47 |
| Msa0014990 | Msa1132840 | 0.814919 | 1.205553e-51 | -8.615850e-47 |
| Msa0014990 | Msa1140210 | 0.830675 | 2.568881e-55 | -8.615850e-47 |
| Msa0014990 | Msa1142020 | 0.816664 | 4.921470e-52 | -8.615850e-47 |
| Msa0014990 | Msa1165940 | 0.812065 | 5.114612e-51 | -8.615850e-47 |
| Msa0014990 | Msa1172450 | 0.803451 | 3.464511e-49 | -8.615850e-47 |
| Msa0014990 | Msa1189070 | 0.815862 | 7.437759e-52 | -8.615850e-47 |
| Msa0014990 | Msa1193290 | 0.806626 | 7.507769e-50 | -8.615850e-47 |
| Msa0014990 | Msa1199570 | 0.820861 | 5.485165e-53 | -8.615850e-47 |
| Msa0014990 | Msa1207270 | 0.802560 | 5.294077e-49 | -8.615850e-47 |
| Msa0014990 | Msa1209460 | 0.827770 | 1.302365e-54 | -8.615850e-47 |
| Msa0014990 | Msa1218600 | 0.815488 | 9.011677e-52 | -8.615850e-47 |
| Msa0014990 | Msa1239920 | 0.809731 | 1.636915e-50 | -8.615850e-47 |
| Msa0014990 | Msa1251160 | 0.812376 | 4.373719e-51 | -8.615850e-47 |
| Msa0014990 | Msa1279400 | 0.805868 | 1.084125e-49 | -8.615850e-47 |
| Msa0014990 | Msa1284550 | 0.817097 | 3.935189e-52 | -8.615850e-47 |
| Msa0014990 | Msa1320410 | 0.809489 | 1.845377e-50 | -8.615850e-47 |
| Msa0014990 | Msa1328710 | 0.834523 | 2.854272e-56 | -8.615850e-47 |
| Msa0014990 | Msa1353980 | 0.802616 | 5.156469e-49 | -8.615850e-47 |
| Msa0014990 | Msa1356140 | 0.802939 | 4.422562e-49 | -8.615850e-47 |
| Msa0014990 | Msa1356510 | 0.806061 | 9.876789e-50 | -8.615850e-47 |
| Msa0014990 | Msa1370070 | -0.807052 | 6.100879e-50 | -8.615850e-47 |
| Msa0014990 | Msa1372230 | 0.802889 | 4.527899e-49 | -8.615850e-47 |
| Msa0014990 | Msa1374550 | 0.800232 | 1.587669e-48 | -8.615850e-47 |
| Msa0014990 | Msa1378490 | 0.807334 | 5.317332e-50 | -8.615850e-47 |
| Msa0014990 | Msa1382620 | 0.804036 | 2.619648e-49 | -8.615850e-47 |
| Msa0014990 | Msa1391770 | 0.822463 | 2.337586e-53 | -8.615850e-47 |
| Msa0014990 | Msa1398340 | 0.800740 | 1.250434e-48 | -8.615850e-47 |
| Msa0014990 | Msa1433390 | 0.811916 | 5.510956e-51 | -8.615850e-47 |
| Msa0014990 | Msa1433810 | 0.818761 | 1.655811e-52 | -8.615850e-47 |
| Msa0014990 | Msa1438250 | 0.813622 | 2.331471e-51 | -8.615850e-47 |
| Msa0014990 | Msa1440880 | 0.802160 | 6.398910e-49 | -8.615850e-47 |
| Msa0014990 | Msa1442820 | 0.800605 | 1.332652e-48 | -8.615850e-47 |
| Msa0014990 | Msa1446810 | 0.800369 | 1.488469e-48 | -8.615850e-47 |
| Msa0014990 | Msa1446820 | 0.825590 | 4.313608e-54 | -8.615850e-47 |
| Msa0014990 | Msa1451160 | 0.825754 | 3.945164e-54 | -8.615850e-47 |
| Msa0014990 | Msa1464810 | 0.808820 | 2.566098e-50 | -8.615850e-47 |
| Msa0014990 | Msa1465440 | 0.807469 | 4.978791e-50 | -8.615850e-47 |
| Msa0014990 | Msa1466920 | 0.819152 | 1.349447e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014990 | MtrunA17_Chr8g0355901 | 77.348 | 181 | 6 | 2 | 1 | 146 | 1 | 181 | 9.04e-92 | 263 |
| Msa0014990 | MtrunA17_Chr4g0041531 | 77.348 | 181 | 6 | 2 | 1 | 146 | 1 | 181 | 1.30e-91 | 263 |
| Msa0014990 | MtrunA17_Chr3g0078591 | 78.212 | 179 | 4 | 2 | 3 | 146 | 4 | 182 | 2.74e-91 | 262 |
| Msa0014990 | MtrunA17_Chr3g0078581 | 62.238 | 143 | 19 | 2 | 38 | 145 | 2 | 144 | 9.26e-53 | 164 |
| Msa0014990 | MtrunA17_Chr7g0264261 | 85.714 | 42 | 6 | 0 | 1 | 42 | 1 | 42 | 5.03e-17 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014990 | AT2G42740.1 | 74.586 | 181 | 11 | 2 | 1 | 146 | 1 | 181 | 4.26e-88 | 254 |
| Msa0014990 | AT4G18730.1 | 74.033 | 181 | 12 | 2 | 1 | 146 | 1 | 181 | 1.66e-87 | 253 |
| Msa0014990 | AT3G58700.1 | 74.033 | 181 | 12 | 2 | 1 | 146 | 1 | 181 | 1.66e-87 | 253 |
| Msa0014990 | AT5G45775.2 | 74.033 | 181 | 12 | 2 | 1 | 146 | 1 | 181 | 1.66e-87 | 253 |
| Msa0014990 | AT5G45775.1 | 73.099 | 171 | 11 | 2 | 11 | 146 | 1 | 171 | 6.16e-80 | 234 |
Find 41 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCCTTCTACTGGTATTTA+TGG | 0.148591 | 1_1:+24122771 | Msa0014990:CDS |
| AATGGATTTCTTTGTTGTTC+TGG | 0.273830 | 1_1:+24122794 | Msa0014990:CDS |
| TGAACCTTGATTTCCCTCAT+TGG | 0.316441 | 1_1:-24121262 | None:intergenic |
| TGACAAGGCAATGCAGCTTT+TGG | 0.318529 | 1_1:+24122170 | Msa0014990:CDS |
| GAACCTTGATTTCCCTCATT+GGG | 0.351224 | 1_1:-24121261 | None:intergenic |
| ATTCCATAAATACCAGTAGA+AGG | 0.360196 | 1_1:-24122774 | None:intergenic |
| TTTCACCTGGAACCACTTCA+TGG | 0.397811 | 1_1:-24122898 | None:intergenic |
| CAATTGCCTGAGATTTGTTA+AGG | 0.399988 | 1_1:-24122935 | None:intergenic |
| TGGGTTCGCCAGTTTCTTCT+CGG | 0.418287 | 1_1:-24121242 | None:intergenic |
| AGGTACACTGTGCGATCCTT+TGG | 0.421779 | 1_1:+24122102 | Msa0014990:CDS |
| CAACACGGGCCTTGCATCTA+CGG | 0.426608 | 1_1:-24122845 | None:intergenic |
| GGAGAGTGGTTTAAAGGTGA+AGG | 0.433325 | 1_1:+24122191 | Msa0014990:CDS |
| GGTGAAAACCTTAGCGGCTC+TGG | 0.439488 | 1_1:-24121332 | None:intergenic |
| TGATGCCATGAAGTGGTTCC+AGG | 0.443205 | 1_1:+24122893 | Msa0014990:CDS |
| AATGGCTTCCGAGAAGAAAC+TGG | 0.445897 | 1_1:+24121234 | None:intergenic |
| TTCTACTGGTATTTATGGAA+TGG | 0.448616 | 1_1:+24122776 | Msa0014990:CDS |
| CTCATTTCTTCTGATTCCAA+AGG | 0.457634 | 1_1:-24122118 | None:intergenic |
| TTTGTTGTTCTGGAACGTCC+TGG | 0.481018 | 1_1:+24122804 | Msa0014990:CDS |
| TCCAGGTATGACCCTTCTAC+TGG | 0.482968 | 1_1:+24122762 | Msa0014990:intron |
| CGACGACCCACACGATAACC+AGG | 0.522163 | 1_1:-24122822 | None:intergenic |
| GAACGTCCTGGTTATCGTGT+GGG | 0.532113 | 1_1:+24122816 | Msa0014990:CDS |
| AGTGATCCTTAACAAATCTC+AGG | 0.532117 | 1_1:+24122929 | Msa0014990:CDS |
| TGGCATCATCCTTCGTGACA+CGG | 0.532628 | 1_1:-24122878 | None:intergenic |
| TAGGTGCTGGAACAACTTAG+TGG | 0.535243 | 1_1:+24121428 | Msa0014990:intron |
| GTGGTTCCAGGTGAAATATG+AGG | 0.535472 | 1_1:+24122905 | Msa0014990:CDS |
| TCGTCTCACCAGAGCCGCTA+AGG | 0.538952 | 1_1:+24121324 | Msa0014990:CDS |
| GAACCCAATGAGGGAAATCA+AGG | 0.546030 | 1_1:+24121258 | Msa0014990:CDS |
| GGAACGTCCTGGTTATCGTG+TGG | 0.550259 | 1_1:+24122815 | Msa0014990:CDS |
| AACATCTTCGTTGATGAGAG+TGG | 0.558438 | 1_1:+24121298 | Msa0014990:CDS |
| GGGTCGTCGCCGTAGATGCA+AGG | 0.575968 | 1_1:+24122836 | Msa0014990:CDS |
| CGTAGATGCAAGGCCCGTGT+TGG | 0.590250 | 1_1:+24122846 | Msa0014990:CDS |
| TTCCATAAATACCAGTAGAA+GGG | 0.597500 | 1_1:-24122773 | None:intergenic |
| TCACTCCCTCATATTTCACC+TGG | 0.603963 | 1_1:-24122911 | None:intergenic |
| CGAAGGATGATGCCATGAAG+TGG | 0.606576 | 1_1:+24122886 | Msa0014990:CDS |
| TGTTACTGTCAGAGGTGACA+AGG | 0.617824 | 1_1:+24122155 | Msa0014990:CDS |
| TGGTTCCAGGTGAAATATGA+GGG | 0.620333 | 1_1:+24122906 | Msa0014990:CDS |
| GAAACTGGCGAACCCAATGA+GGG | 0.621771 | 1_1:+24121249 | Msa0014990:CDS |
| AAGAGGGGTGAAAACCTTAG+CGG | 0.625178 | 1_1:-24121338 | None:intergenic |
| GCATGCTATGTTACTGTCAG+AGG | 0.636257 | 1_1:+24122147 | Msa0014990:CDS |
| AGAAACTGGCGAACCCAATG+AGG | 0.653349 | 1_1:+24121248 | Msa0014990:CDS |
| AATTCAAAACCGTGTCACGA+AGG | 0.678869 | 1_1:+24122869 | Msa0014990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAACTTTATTATCAATTT+TGG | + | chr1_1:24121572-24121591 | Msa0014990:intron | 10.0% |
| !!! | TAAACTTTATTATCAATTTT+GGG | + | chr1_1:24121573-24121592 | Msa0014990:intron | 10.0% |
| !! | TATTATATAATCTTATAAAC+TGG | + | chr1_1:24122016-24122035 | Msa0014990:intron | 10.0% |
| !!! | ACAAATATTTTCAATTAATT+TGG | - | chr1_1:24122423-24122442 | None:intergenic | 10.0% |
| !! | TAAAATTATTGAAACATTAT+TGG | + | chr1_1:24122717-24122736 | Msa0014990:intron | 10.0% |
| !!! | ATAAACTTTATTATCAATTT+TGG | + | chr1_1:24121572-24121591 | Msa0014990:intron | 10.0% |
| !!! | TAAACTTTATTATCAATTTT+GGG | + | chr1_1:24121573-24121592 | Msa0014990:intron | 10.0% |
| !! | TATTATATAATCTTATAAAC+TGG | + | chr1_1:24122016-24122035 | Msa0014990:intron | 10.0% |
| !!! | ACAAATATTTTCAATTAATT+TGG | - | chr1_1:24122423-24122442 | None:intergenic | 10.0% |
| !! | TAAAATTATTGAAACATTAT+TGG | + | chr1_1:24122717-24122736 | Msa0014990:intron | 10.0% |
| !! | AAAATAAATCCAAAAAAGAA+AGG | - | chr1_1:24122627-24122646 | None:intergenic | 15.0% |
| !! | AAAATAAATCCAAAAAAGAA+AGG | - | chr1_1:24122627-24122646 | None:intergenic | 15.0% |
| !!! | TGATATTTTTTTTGTGTTGT+AGG | + | chr1_1:24121409-24121428 | Msa0014990:intron | 20.0% |
| !!! | TTTTGTAGAAATTTATCACT+GGG | + | chr1_1:24121478-24121497 | Msa0014990:intron | 20.0% |
| !! | TTCAGACAAAAAAATTAACT+TGG | + | chr1_1:24121646-24121665 | Msa0014990:intron | 20.0% |
| !! | TCAGACAAAAAAATTAACTT+GGG | + | chr1_1:24121647-24121666 | Msa0014990:intron | 20.0% |
| !!! | TCTAATTTAGGGTTAATTAT+GGG | + | chr1_1:24121683-24121702 | Msa0014990:intron | 20.0% |
| !!! | TAGTTTGATTTTGTAGTTAT+TGG | + | chr1_1:24121774-24121793 | Msa0014990:intron | 20.0% |
| !! | AAAGAAATGAAAGATGTTTA+CGG | + | chr1_1:24121906-24121925 | Msa0014990:intron | 20.0% |
| !! | CATATAATATTGGATAAATG+TGG | + | chr1_1:24122043-24122062 | Msa0014990:intron | 20.0% |
| !!! | TTGTAAGAGATTAACATTTT+AGG | + | chr1_1:24122342-24122361 | Msa0014990:intron | 20.0% |
| !!! | GAAATTTTATGATATGACAT+AGG | + | chr1_1:24122368-24122387 | Msa0014990:intron | 20.0% |
| !!! | ATAATAAAGTTTGCTCAATA+TGG | + | chr1_1:24122479-24122498 | Msa0014990:intron | 20.0% |
| !! | AAATTGCAAAAACAGATAAT+TGG | - | chr1_1:24122573-24122592 | None:intergenic | 20.0% |
| !! | TATTTATGTTATCTTGCTTT+AGG | + | chr1_1:24122651-24122670 | Msa0014990:intron | 20.0% |
| !! | TATGAAATCAAACATTTATG+AGG | - | chr1_1:24122685-24122704 | None:intergenic | 20.0% |
| !!! | TGATATTTTTTTTGTGTTGT+AGG | + | chr1_1:24121409-24121428 | Msa0014990:intron | 20.0% |
| !!! | TTTTGTAGAAATTTATCACT+GGG | + | chr1_1:24121478-24121497 | Msa0014990:intron | 20.0% |
| !! | TTCAGACAAAAAAATTAACT+TGG | + | chr1_1:24121646-24121665 | Msa0014990:intron | 20.0% |
| !! | TCAGACAAAAAAATTAACTT+GGG | + | chr1_1:24121647-24121666 | Msa0014990:intron | 20.0% |
| !!! | TCTAATTTAGGGTTAATTAT+GGG | + | chr1_1:24121683-24121702 | Msa0014990:intron | 20.0% |
| !!! | TAGTTTGATTTTGTAGTTAT+TGG | + | chr1_1:24121774-24121793 | Msa0014990:intron | 20.0% |
| !! | AAAGAAATGAAAGATGTTTA+CGG | + | chr1_1:24121906-24121925 | Msa0014990:intron | 20.0% |
| !! | CATATAATATTGGATAAATG+TGG | + | chr1_1:24122043-24122062 | Msa0014990:intron | 20.0% |
| !!! | TTGTAAGAGATTAACATTTT+AGG | + | chr1_1:24122342-24122361 | Msa0014990:intron | 20.0% |
| !!! | GAAATTTTATGATATGACAT+AGG | + | chr1_1:24122368-24122387 | Msa0014990:intron | 20.0% |
| !!! | ATAATAAAGTTTGCTCAATA+TGG | + | chr1_1:24122479-24122498 | Msa0014990:intron | 20.0% |
| !! | AAATTGCAAAAACAGATAAT+TGG | - | chr1_1:24122573-24122592 | None:intergenic | 20.0% |
| !! | TATTTATGTTATCTTGCTTT+AGG | + | chr1_1:24122651-24122670 | Msa0014990:intron | 20.0% |
| !! | TATGAAATCAAACATTTATG+AGG | - | chr1_1:24122685-24122704 | None:intergenic | 20.0% |
| ! | ATTTCTACAAAACTAACCTT+TGG | - | chr1_1:24121470-24121489 | None:intergenic | 25.0% |
| !! | GTTTTGTAGAAATTTATCAC+TGG | + | chr1_1:24121477-24121496 | Msa0014990:intron | 25.0% |
| !! | CAGACAAAAAAATTAACTTG+GGG | + | chr1_1:24121648-24121667 | Msa0014990:intron | 25.0% |
| !! | AAAAAAATTAACTTGGGGTT+TGG | + | chr1_1:24121653-24121672 | Msa0014990:intron | 25.0% |
| ! | TTTGGTATGTAGTCTAATTT+AGG | + | chr1_1:24121671-24121690 | Msa0014990:intron | 25.0% |
| ! | TTGGTATGTAGTCTAATTTA+GGG | + | chr1_1:24121672-24121691 | Msa0014990:intron | 25.0% |
| !! | GTCTAATTTAGGGTTAATTA+TGG | + | chr1_1:24121682-24121701 | Msa0014990:intron | 25.0% |
| !!! | TAGTTATTGGTAATGATGAA+AGG | + | chr1_1:24121787-24121806 | Msa0014990:intron | 25.0% |
| !!! | AGTACATTAGATTTTTAGCA+TGG | - | chr1_1:24121993-24122012 | None:intergenic | 25.0% |
| ! | AACTGGCTATCATATAATAT+TGG | + | chr1_1:24122033-24122052 | Msa0014990:intron | 25.0% |
| !! | TATTCAAGAGCATATTGATT+TGG | + | chr1_1:24122266-24122285 | Msa0014990:intron | 25.0% |
| !!! | ATTCAAGAGCATATTGATTT+GGG | + | chr1_1:24122267-24122286 | Msa0014990:intron | 25.0% |
| ! | TTTATTATTCCTTGCTTTGT+TGG | + | chr1_1:24122451-24122470 | Msa0014990:intron | 25.0% |
| ! | AAGCAAGATAACATAAATAC+AGG | - | chr1_1:24122650-24122669 | None:intergenic | 25.0% |
| ! | ATTTCTACAAAACTAACCTT+TGG | - | chr1_1:24121470-24121489 | None:intergenic | 25.0% |
| !! | GTTTTGTAGAAATTTATCAC+TGG | + | chr1_1:24121477-24121496 | Msa0014990:intron | 25.0% |
| !! | CAGACAAAAAAATTAACTTG+GGG | + | chr1_1:24121648-24121667 | Msa0014990:intron | 25.0% |
| !! | AAAAAAATTAACTTGGGGTT+TGG | + | chr1_1:24121653-24121672 | Msa0014990:intron | 25.0% |
| ! | TTTGGTATGTAGTCTAATTT+AGG | + | chr1_1:24121671-24121690 | Msa0014990:intron | 25.0% |
| ! | TTGGTATGTAGTCTAATTTA+GGG | + | chr1_1:24121672-24121691 | Msa0014990:intron | 25.0% |
| !! | GTCTAATTTAGGGTTAATTA+TGG | + | chr1_1:24121682-24121701 | Msa0014990:intron | 25.0% |
| !!! | TAGTTATTGGTAATGATGAA+AGG | + | chr1_1:24121787-24121806 | Msa0014990:intron | 25.0% |
| !!! | AGTACATTAGATTTTTAGCA+TGG | - | chr1_1:24121993-24122012 | None:intergenic | 25.0% |
| ! | AACTGGCTATCATATAATAT+TGG | + | chr1_1:24122033-24122052 | Msa0014990:intron | 25.0% |
| !! | TATTCAAGAGCATATTGATT+TGG | + | chr1_1:24122266-24122285 | Msa0014990:intron | 25.0% |
| !!! | ATTCAAGAGCATATTGATTT+GGG | + | chr1_1:24122267-24122286 | Msa0014990:intron | 25.0% |
| ! | TTTATTATTCCTTGCTTTGT+TGG | + | chr1_1:24122451-24122470 | Msa0014990:intron | 25.0% |
| ! | AAGCAAGATAACATAAATAC+AGG | - | chr1_1:24122650-24122669 | None:intergenic | 25.0% |
| !! | TGGTAATGAGTATGGATTTT+AGG | + | chr1_1:24121515-24121534 | Msa0014990:intron | 30.0% |
| ! | GGTAATGAGTATGGATTTTA+GGG | + | chr1_1:24121516-24121535 | Msa0014990:intron | 30.0% |
| ! | AATGCGAAAGCTTGATAATA+GGG | + | chr1_1:24121742-24121761 | Msa0014990:intron | 30.0% |
| TGAACTTGTGACTAAAATTG+CGG | + | chr1_1:24121812-24121831 | Msa0014990:intron | 30.0% | |
| ! | CATTTCTTTTCTTACATGTG+TGG | - | chr1_1:24121895-24121914 | None:intergenic | 30.0% |
| !!! | AGATTTTTAGCATGGAAACT+AGG | - | chr1_1:24121985-24122004 | None:intergenic | 30.0% |
| ATAAGCTTAAGAACAACTCT+TGG | + | chr1_1:24122296-24122315 | Msa0014990:intron | 30.0% | |
| ! | AAGAGATTAACATTTTAGGC+AGG | + | chr1_1:24122346-24122365 | Msa0014990:intron | 30.0% |
| AAATCCAAAAAAGAAAGGCA+TGG | - | chr1_1:24122622-24122641 | None:intergenic | 30.0% | |
| TTCCATAAATACCAGTAGAA+GGG | - | chr1_1:24122776-24122795 | None:intergenic | 30.0% | |
| ATTCCATAAATACCAGTAGA+AGG | - | chr1_1:24122777-24122796 | None:intergenic | 30.0% | |
| TTCTACTGGTATTTATGGAA+TGG | + | chr1_1:24122776-24122795 | Msa0014990:CDS | 30.0% | |
| !! | AATGGATTTCTTTGTTGTTC+TGG | + | chr1_1:24122794-24122813 | Msa0014990:CDS | 30.0% |
| !! | TGGTAATGAGTATGGATTTT+AGG | + | chr1_1:24121515-24121534 | Msa0014990:intron | 30.0% |
| ! | GGTAATGAGTATGGATTTTA+GGG | + | chr1_1:24121516-24121535 | Msa0014990:intron | 30.0% |
| ! | AATGCGAAAGCTTGATAATA+GGG | + | chr1_1:24121742-24121761 | Msa0014990:intron | 30.0% |
| TGAACTTGTGACTAAAATTG+CGG | + | chr1_1:24121812-24121831 | Msa0014990:intron | 30.0% | |
| ! | CATTTCTTTTCTTACATGTG+TGG | - | chr1_1:24121895-24121914 | None:intergenic | 30.0% |
| !!! | AGATTTTTAGCATGGAAACT+AGG | - | chr1_1:24121985-24122004 | None:intergenic | 30.0% |
| ATAAGCTTAAGAACAACTCT+TGG | + | chr1_1:24122296-24122315 | Msa0014990:intron | 30.0% | |
| ! | AAGAGATTAACATTTTAGGC+AGG | + | chr1_1:24122346-24122365 | Msa0014990:intron | 30.0% |
| AAATCCAAAAAAGAAAGGCA+TGG | - | chr1_1:24122622-24122641 | None:intergenic | 30.0% | |
| TTCCATAAATACCAGTAGAA+GGG | - | chr1_1:24122776-24122795 | None:intergenic | 30.0% | |
| ATTCCATAAATACCAGTAGA+AGG | - | chr1_1:24122777-24122796 | None:intergenic | 30.0% | |
| TTCTACTGGTATTTATGGAA+TGG | + | chr1_1:24122776-24122795 | Msa0014990:CDS | 30.0% | |
| !! | AATGGATTTCTTTGTTGTTC+TGG | + | chr1_1:24122794-24122813 | Msa0014990:CDS | 30.0% |
| !!! | TTTTTTTGTGTTGTAGGTGC+TGG | + | chr1_1:24121415-24121434 | Msa0014990:intron | 35.0% |
| ! | TGTAATGCTGGTAATGAGTA+TGG | + | chr1_1:24121507-24121526 | Msa0014990:intron | 35.0% |
| ! | CAATGCGAAAGCTTGATAAT+AGG | + | chr1_1:24121741-24121760 | Msa0014990:intron | 35.0% |
| TTGTGACTAAAATTGCGGTA+AGG | + | chr1_1:24121817-24121836 | Msa0014990:intron | 35.0% | |
| AAATTGCGGTAAGGTTGTTA+CGG | + | chr1_1:24121826-24121845 | Msa0014990:intron | 35.0% | |
| ! | ATCGATGTACTTGAGCATTT+TGG | + | chr1_1:24121939-24121958 | Msa0014990:intron | 35.0% |
| ! | TCCTTTGAATTTTTACAGCG+AGG | + | chr1_1:24122082-24122101 | Msa0014990:intron | 35.0% |
| ACCTCGCTGTAAAAATTCAA+AGG | - | chr1_1:24122086-24122105 | None:intergenic | 35.0% | |
| CTCATTTCTTCTGATTCCAA+AGG | - | chr1_1:24122121-24122140 | None:intergenic | 35.0% | |
| !! | TGAAGGAGTATGAACTTTTG+AGG | + | chr1_1:24122208-24122227 | Msa0014990:intron | 35.0% |
| TTATATGCACCAACAAAGCA+AGG | - | chr1_1:24122463-24122482 | None:intergenic | 35.0% | |
| TGAGGAACAAAGACTTATGT+AGG | + | chr1_1:24122505-24122524 | Msa0014990:intron | 35.0% | |
| AACAAAGACTTATGTAGGCT+AGG | + | chr1_1:24122510-24122529 | Msa0014990:intron | 35.0% | |
| !!! | ATTGCCATGCCTTTCTTTTT+TGG | + | chr1_1:24122615-24122634 | Msa0014990:intron | 35.0% |
| AGTGATCCTTAACAAATCTC+AGG | + | chr1_1:24122929-24122948 | Msa0014990:CDS | 35.0% | |
| !! | CAATTGCCTGAGATTTGTTA+AGG | - | chr1_1:24122938-24122957 | None:intergenic | 35.0% |
| !!! | TTTTTTTGTGTTGTAGGTGC+TGG | + | chr1_1:24121415-24121434 | Msa0014990:intron | 35.0% |
| ! | TGTAATGCTGGTAATGAGTA+TGG | + | chr1_1:24121507-24121526 | Msa0014990:intron | 35.0% |
| ! | CAATGCGAAAGCTTGATAAT+AGG | + | chr1_1:24121741-24121760 | Msa0014990:intron | 35.0% |
| TTGTGACTAAAATTGCGGTA+AGG | + | chr1_1:24121817-24121836 | Msa0014990:intron | 35.0% | |
| AAATTGCGGTAAGGTTGTTA+CGG | + | chr1_1:24121826-24121845 | Msa0014990:intron | 35.0% | |
| ! | ATCGATGTACTTGAGCATTT+TGG | + | chr1_1:24121939-24121958 | Msa0014990:intron | 35.0% |
| ! | TCCTTTGAATTTTTACAGCG+AGG | + | chr1_1:24122082-24122101 | Msa0014990:intron | 35.0% |
| ACCTCGCTGTAAAAATTCAA+AGG | - | chr1_1:24122086-24122105 | None:intergenic | 35.0% | |
| CTCATTTCTTCTGATTCCAA+AGG | - | chr1_1:24122121-24122140 | None:intergenic | 35.0% | |
| !! | TGAAGGAGTATGAACTTTTG+AGG | + | chr1_1:24122208-24122227 | Msa0014990:intron | 35.0% |
| TTATATGCACCAACAAAGCA+AGG | - | chr1_1:24122463-24122482 | None:intergenic | 35.0% | |
| TGAGGAACAAAGACTTATGT+AGG | + | chr1_1:24122505-24122524 | Msa0014990:intron | 35.0% | |
| AACAAAGACTTATGTAGGCT+AGG | + | chr1_1:24122510-24122529 | Msa0014990:intron | 35.0% | |
| !!! | ATTGCCATGCCTTTCTTTTT+TGG | + | chr1_1:24122615-24122634 | Msa0014990:intron | 35.0% |
| AGTGATCCTTAACAAATCTC+AGG | + | chr1_1:24122929-24122948 | Msa0014990:CDS | 35.0% | |
| !! | CAATTGCCTGAGATTTGTTA+AGG | - | chr1_1:24122938-24122957 | None:intergenic | 35.0% |
| GAACCTTGATTTCCCTCATT+GGG | - | chr1_1:24121264-24121283 | None:intergenic | 40.0% | |
| TGAACCTTGATTTCCCTCAT+TGG | - | chr1_1:24121265-24121284 | None:intergenic | 40.0% | |
| ! | AACATCTTCGTTGATGAGAG+TGG | + | chr1_1:24121298-24121317 | Msa0014990:CDS | 40.0% |
| ! | ACTAACCTTTGGAGAACACT+GGG | - | chr1_1:24121459-24121478 | None:intergenic | 40.0% |
| ! | AACTAACCTTTGGAGAACAC+TGG | - | chr1_1:24121460-24121479 | None:intergenic | 40.0% |
| ACTGGGTTCTTATGTAATGC+TGG | + | chr1_1:24121495-24121514 | Msa0014990:intron | 40.0% | |
| AATTGCGGTAAGGTTGTTAC+GGG | + | chr1_1:24121827-24121846 | Msa0014990:intron | 40.0% | |
| !! | GCTTTTGGAGAGTGGTTTAA+AGG | + | chr1_1:24122185-24122204 | Msa0014990:CDS | 40.0% |
| !! | AGGAGTATGAACTTTTGAGG+AGG | + | chr1_1:24122211-24122230 | Msa0014990:intron | 40.0% |
| ! | TTCAGTGATACTGGTTGCTT+TGG | + | chr1_1:24122237-24122256 | Msa0014990:intron | 40.0% |
| ! | GATACTGGTTGCTTTGGATT+TGG | + | chr1_1:24122243-24122262 | Msa0014990:intron | 40.0% |
| TGACATAGGTTGTGTACTTG+TGG | + | chr1_1:24122382-24122401 | Msa0014990:intron | 40.0% | |
| ! | GTTTGCTCAATATGGTCTTG+AGG | + | chr1_1:24122487-24122506 | Msa0014990:intron | 40.0% |
| GACCCTTCTACTGGTATTTA+TGG | + | chr1_1:24122771-24122790 | Msa0014990:CDS | 40.0% | |
| !!! | ACGGTTTTGAATTCCAACAC+GGG | - | chr1_1:24122862-24122881 | None:intergenic | 40.0% |
| !!! | CACGGTTTTGAATTCCAACA+CGG | - | chr1_1:24122863-24122882 | None:intergenic | 40.0% |
| AATTCAAAACCGTGTCACGA+AGG | + | chr1_1:24122869-24122888 | Msa0014990:CDS | 40.0% | |
| TGGTTCCAGGTGAAATATGA+GGG | + | chr1_1:24122906-24122925 | Msa0014990:CDS | 40.0% | |
| GAACCTTGATTTCCCTCATT+GGG | - | chr1_1:24121264-24121283 | None:intergenic | 40.0% | |
| TGAACCTTGATTTCCCTCAT+TGG | - | chr1_1:24121265-24121284 | None:intergenic | 40.0% | |
| ! | AACATCTTCGTTGATGAGAG+TGG | + | chr1_1:24121298-24121317 | Msa0014990:CDS | 40.0% |
| ! | ACTAACCTTTGGAGAACACT+GGG | - | chr1_1:24121459-24121478 | None:intergenic | 40.0% |
| ! | AACTAACCTTTGGAGAACAC+TGG | - | chr1_1:24121460-24121479 | None:intergenic | 40.0% |
| ACTGGGTTCTTATGTAATGC+TGG | + | chr1_1:24121495-24121514 | Msa0014990:intron | 40.0% | |
| AATTGCGGTAAGGTTGTTAC+GGG | + | chr1_1:24121827-24121846 | Msa0014990:intron | 40.0% | |
| !! | GCTTTTGGAGAGTGGTTTAA+AGG | + | chr1_1:24122185-24122204 | Msa0014990:CDS | 40.0% |
| !! | AGGAGTATGAACTTTTGAGG+AGG | + | chr1_1:24122211-24122230 | Msa0014990:intron | 40.0% |
| ! | TTCAGTGATACTGGTTGCTT+TGG | + | chr1_1:24122237-24122256 | Msa0014990:intron | 40.0% |
| ! | GATACTGGTTGCTTTGGATT+TGG | + | chr1_1:24122243-24122262 | Msa0014990:intron | 40.0% |
| TGACATAGGTTGTGTACTTG+TGG | + | chr1_1:24122382-24122401 | Msa0014990:intron | 40.0% | |
| ! | GTTTGCTCAATATGGTCTTG+AGG | + | chr1_1:24122487-24122506 | Msa0014990:intron | 40.0% |
| GACCCTTCTACTGGTATTTA+TGG | + | chr1_1:24122771-24122790 | Msa0014990:CDS | 40.0% | |
| !!! | ACGGTTTTGAATTCCAACAC+GGG | - | chr1_1:24122862-24122881 | None:intergenic | 40.0% |
| !!! | CACGGTTTTGAATTCCAACA+CGG | - | chr1_1:24122863-24122882 | None:intergenic | 40.0% |
| AATTCAAAACCGTGTCACGA+AGG | + | chr1_1:24122869-24122888 | Msa0014990:CDS | 40.0% | |
| TGGTTCCAGGTGAAATATGA+GGG | + | chr1_1:24122906-24122925 | Msa0014990:CDS | 40.0% | |
| GAACCCAATGAGGGAAATCA+AGG | + | chr1_1:24121258-24121277 | Msa0014990:CDS | 45.0% | |
| AAGAGGGGTGAAAACCTTAG+CGG | - | chr1_1:24121341-24121360 | None:intergenic | 45.0% | |
| ACTCAGATCCAGTGAGAAGA+GGG | - | chr1_1:24121357-24121376 | None:intergenic | 45.0% | |
| AACTCAGATCCAGTGAGAAG+AGG | - | chr1_1:24121358-24121377 | None:intergenic | 45.0% | |
| !! | TAGGTGCTGGAACAACTTAG+TGG | + | chr1_1:24121428-24121447 | Msa0014990:intron | 45.0% |
| TCAAACCCAGTGTTCTCCAA+AGG | + | chr1_1:24121451-24121470 | Msa0014990:intron | 45.0% | |
| AAGGTTGTTACGGGTCTTAG+AGG | + | chr1_1:24121836-24121855 | Msa0014990:intron | 45.0% | |
| GCATGCTATGTTACTGTCAG+AGG | + | chr1_1:24122147-24122166 | Msa0014990:CDS | 45.0% | |
| TGTTACTGTCAGAGGTGACA+AGG | + | chr1_1:24122155-24122174 | Msa0014990:CDS | 45.0% | |
| ! | TGACAAGGCAATGCAGCTTT+TGG | + | chr1_1:24122170-24122189 | Msa0014990:CDS | 45.0% |
| GGAGAGTGGTTTAAAGGTGA+AGG | + | chr1_1:24122191-24122210 | Msa0014990:CDS | 45.0% | |
| AGGAGGAACTTCAGTGATAC+TGG | + | chr1_1:24122228-24122247 | Msa0014990:intron | 45.0% | |
| !! | TTTGTTGTTCTGGAACGTCC+TGG | + | chr1_1:24122804-24122823 | Msa0014990:CDS | 45.0% |
| TTTCACCTGGAACCACTTCA+TGG | - | chr1_1:24122901-24122920 | None:intergenic | 45.0% | |
| GTGGTTCCAGGTGAAATATG+AGG | + | chr1_1:24122905-24122924 | Msa0014990:CDS | 45.0% | |
| TCACTCCCTCATATTTCACC+TGG | - | chr1_1:24122914-24122933 | None:intergenic | 45.0% | |
| GAACCCAATGAGGGAAATCA+AGG | + | chr1_1:24121258-24121277 | Msa0014990:CDS | 45.0% | |
| AAGAGGGGTGAAAACCTTAG+CGG | - | chr1_1:24121341-24121360 | None:intergenic | 45.0% | |
| ACTCAGATCCAGTGAGAAGA+GGG | - | chr1_1:24121357-24121376 | None:intergenic | 45.0% | |
| AACTCAGATCCAGTGAGAAG+AGG | - | chr1_1:24121358-24121377 | None:intergenic | 45.0% | |
| !! | TAGGTGCTGGAACAACTTAG+TGG | + | chr1_1:24121428-24121447 | Msa0014990:intron | 45.0% |
| TCAAACCCAGTGTTCTCCAA+AGG | + | chr1_1:24121451-24121470 | Msa0014990:intron | 45.0% | |
| AAGGTTGTTACGGGTCTTAG+AGG | + | chr1_1:24121836-24121855 | Msa0014990:intron | 45.0% | |
| GCATGCTATGTTACTGTCAG+AGG | + | chr1_1:24122147-24122166 | Msa0014990:CDS | 45.0% | |
| TGTTACTGTCAGAGGTGACA+AGG | + | chr1_1:24122155-24122174 | Msa0014990:CDS | 45.0% | |
| ! | TGACAAGGCAATGCAGCTTT+TGG | + | chr1_1:24122170-24122189 | Msa0014990:CDS | 45.0% |
| GGAGAGTGGTTTAAAGGTGA+AGG | + | chr1_1:24122191-24122210 | Msa0014990:CDS | 45.0% | |
| AGGAGGAACTTCAGTGATAC+TGG | + | chr1_1:24122228-24122247 | Msa0014990:intron | 45.0% | |
| !! | TTTGTTGTTCTGGAACGTCC+TGG | + | chr1_1:24122804-24122823 | Msa0014990:CDS | 45.0% |
| TTTCACCTGGAACCACTTCA+TGG | - | chr1_1:24122901-24122920 | None:intergenic | 45.0% | |
| GTGGTTCCAGGTGAAATATG+AGG | + | chr1_1:24122905-24122924 | Msa0014990:CDS | 45.0% | |
| TCACTCCCTCATATTTCACC+TGG | - | chr1_1:24122914-24122933 | None:intergenic | 45.0% | |
| TGGGTTCGCCAGTTTCTTCT+CGG | - | chr1_1:24121245-24121264 | None:intergenic | 50.0% | |
| AGAAACTGGCGAACCCAATG+AGG | + | chr1_1:24121248-24121267 | Msa0014990:CDS | 50.0% | |
| GAAACTGGCGAACCCAATGA+GGG | + | chr1_1:24121249-24121268 | Msa0014990:CDS | 50.0% | |
| ! | GTTTTCACCCCTCTTCTCAC+TGG | + | chr1_1:24121346-24121365 | Msa0014990:intron | 50.0% |
| CTCAGATCCAGTGAGAAGAG+GGG | - | chr1_1:24121356-24121375 | None:intergenic | 50.0% | |
| ! | GTTACGGGTCTTAGAGGCAT+AGG | + | chr1_1:24121842-24121861 | Msa0014990:intron | 50.0% |
| AGGTACACTGTGCGATCCTT+TGG | + | chr1_1:24122102-24122121 | Msa0014990:CDS | 50.0% | |
| !! | GCAATGCAGCTTTTGGAGAG+TGG | + | chr1_1:24122177-24122196 | Msa0014990:CDS | 50.0% |
| GAGCAGATTGTCAAGCGTCA+GGG | - | chr1_1:24122744-24122763 | None:intergenic | 50.0% | |
| TCCAGGTATGACCCTTCTAC+TGG | + | chr1_1:24122762-24122781 | Msa0014990:intron | 50.0% | |
| ACCAGTAGAAGGGTCATACC+TGG | - | chr1_1:24122766-24122785 | None:intergenic | 50.0% | |
| GAACGTCCTGGTTATCGTGT+GGG | + | chr1_1:24122816-24122835 | Msa0014990:CDS | 50.0% | |
| TGGCATCATCCTTCGTGACA+CGG | - | chr1_1:24122881-24122900 | None:intergenic | 50.0% | |
| CGAAGGATGATGCCATGAAG+TGG | + | chr1_1:24122886-24122905 | Msa0014990:CDS | 50.0% | |
| TGATGCCATGAAGTGGTTCC+AGG | + | chr1_1:24122893-24122912 | Msa0014990:CDS | 50.0% | |
| TGGGTTCGCCAGTTTCTTCT+CGG | - | chr1_1:24121245-24121264 | None:intergenic | 50.0% | |
| AGAAACTGGCGAACCCAATG+AGG | + | chr1_1:24121248-24121267 | Msa0014990:CDS | 50.0% | |
| GAAACTGGCGAACCCAATGA+GGG | + | chr1_1:24121249-24121268 | Msa0014990:CDS | 50.0% | |
| ! | GTTTTCACCCCTCTTCTCAC+TGG | + | chr1_1:24121346-24121365 | Msa0014990:intron | 50.0% |
| CTCAGATCCAGTGAGAAGAG+GGG | - | chr1_1:24121356-24121375 | None:intergenic | 50.0% | |
| ! | GTTACGGGTCTTAGAGGCAT+AGG | + | chr1_1:24121842-24121861 | Msa0014990:intron | 50.0% |
| AGGTACACTGTGCGATCCTT+TGG | + | chr1_1:24122102-24122121 | Msa0014990:CDS | 50.0% | |
| !! | GCAATGCAGCTTTTGGAGAG+TGG | + | chr1_1:24122177-24122196 | Msa0014990:CDS | 50.0% |
| GAGCAGATTGTCAAGCGTCA+GGG | - | chr1_1:24122744-24122763 | None:intergenic | 50.0% | |
| TCCAGGTATGACCCTTCTAC+TGG | + | chr1_1:24122762-24122781 | Msa0014990:intron | 50.0% | |
| ACCAGTAGAAGGGTCATACC+TGG | - | chr1_1:24122766-24122785 | None:intergenic | 50.0% | |
| GAACGTCCTGGTTATCGTGT+GGG | + | chr1_1:24122816-24122835 | Msa0014990:CDS | 50.0% | |
| TGGCATCATCCTTCGTGACA+CGG | - | chr1_1:24122881-24122900 | None:intergenic | 50.0% | |
| CGAAGGATGATGCCATGAAG+TGG | + | chr1_1:24122886-24122905 | Msa0014990:CDS | 50.0% | |
| TGATGCCATGAAGTGGTTCC+AGG | + | chr1_1:24122893-24122912 | Msa0014990:CDS | 50.0% | |
| GGTGAAAACCTTAGCGGCTC+TGG | - | chr1_1:24121335-24121354 | None:intergenic | 55.0% | |
| GGAGCAGATTGTCAAGCGTC+AGG | - | chr1_1:24122745-24122764 | None:intergenic | 55.0% | |
| GACGCTTGACAATCTGCTCC+AGG | + | chr1_1:24122745-24122764 | Msa0014990:intron | 55.0% | |
| GGAACGTCCTGGTTATCGTG+TGG | + | chr1_1:24122815-24122834 | Msa0014990:CDS | 55.0% | |
| CAACACGGGCCTTGCATCTA+CGG | - | chr1_1:24122848-24122867 | None:intergenic | 55.0% | |
| GGTGAAAACCTTAGCGGCTC+TGG | - | chr1_1:24121335-24121354 | None:intergenic | 55.0% | |
| GGAGCAGATTGTCAAGCGTC+AGG | - | chr1_1:24122745-24122764 | None:intergenic | 55.0% | |
| GACGCTTGACAATCTGCTCC+AGG | + | chr1_1:24122745-24122764 | Msa0014990:intron | 55.0% | |
| GGAACGTCCTGGTTATCGTG+TGG | + | chr1_1:24122815-24122834 | Msa0014990:CDS | 55.0% | |
| CAACACGGGCCTTGCATCTA+CGG | - | chr1_1:24122848-24122867 | None:intergenic | 55.0% | |
| TCGTCTCACCAGAGCCGCTA+AGG | + | chr1_1:24121324-24121343 | Msa0014990:CDS | 60.0% | |
| CGACGACCCACACGATAACC+AGG | - | chr1_1:24122825-24122844 | None:intergenic | 60.0% | |
| CGTAGATGCAAGGCCCGTGT+TGG | + | chr1_1:24122846-24122865 | Msa0014990:CDS | 60.0% | |
| TCGTCTCACCAGAGCCGCTA+AGG | + | chr1_1:24121324-24121343 | Msa0014990:CDS | 60.0% | |
| CGACGACCCACACGATAACC+AGG | - | chr1_1:24122825-24122844 | None:intergenic | 60.0% | |
| CGTAGATGCAAGGCCCGTGT+TGG | + | chr1_1:24122846-24122865 | Msa0014990:CDS | 60.0% | |
| GGGTCGTCGCCGTAGATGCA+AGG | + | chr1_1:24122836-24122855 | Msa0014990:CDS | 65.0% | |
| GGGTCGTCGCCGTAGATGCA+AGG | + | chr1_1:24122836-24122855 | Msa0014990:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 24121235 | 24122962 | 24121235 | ID=Msa0014990;Name=Msa0014990 |
| chr1_1 | mRNA | 24121235 | 24122962 | 24121235 | ID=Msa0014990-mRNA-1;Parent=Msa0014990;Name=Msa0014990-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0.33|0.5|4|0|146 |
| chr1_1 | exon | 24121235 | 24121345 | 24121235 | ID=Msa0014990-mRNA-1:exon:8326;Parent=Msa0014990-mRNA-1 |
| chr1_1 | exon | 24121431 | 24121449 | 24121431 | ID=Msa0014990-mRNA-1:exon:8327;Parent=Msa0014990-mRNA-1 |
| chr1_1 | exon | 24122100 | 24122214 | 24122100 | ID=Msa0014990-mRNA-1:exon:8328;Parent=Msa0014990-mRNA-1 |
| chr1_1 | exon | 24122767 | 24122962 | 24122767 | ID=Msa0014990-mRNA-1:exon:8329;Parent=Msa0014990-mRNA-1 |
| chr1_1 | CDS | 24121235 | 24121345 | 24121235 | ID=Msa0014990-mRNA-1:cds;Parent=Msa0014990-mRNA-1 |
| chr1_1 | CDS | 24121431 | 24121449 | 24121431 | ID=Msa0014990-mRNA-1:cds;Parent=Msa0014990-mRNA-1 |
| chr1_1 | CDS | 24122100 | 24122214 | 24122100 | ID=Msa0014990-mRNA-1:cds;Parent=Msa0014990-mRNA-1 |
| chr1_1 | CDS | 24122767 | 24122962 | 24122767 | ID=Msa0014990-mRNA-1:cds;Parent=Msa0014990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
