Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007770 | PNY08352.1 | 65.099 | 659 | 146 | 10 | 1 | 594 | 1 | 640 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007770 | sp|Q6AVI0|RSLE2_ORYSJ | 28.288 | 555 | 328 | 12 | 59 | 558 | 163 | 702 | 3.74e-65 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007770 | A0A2K3NZ93 | 65.099 | 659 | 146 | 10 | 1 | 594 | 1 | 640 | 0.0 | 821 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007770 | Msa0017510 | 0.810706 | 1.008568e-50 | -8.615850e-47 |
| Msa0007770 | Msa0142220 | 0.806356 | 8.559747e-50 | -8.615850e-47 |
| Msa0007770 | Msa0157290 | 0.810643 | 1.040821e-50 | -8.615850e-47 |
| Msa0007770 | Msa0235140 | 0.806202 | 9.225111e-50 | -8.615850e-47 |
| Msa0007770 | Msa0257460 | 0.800778 | 1.228618e-48 | -8.615850e-47 |
| Msa0007770 | Msa0437990 | 0.812779 | 3.570676e-51 | -8.615850e-47 |
| Msa0007770 | Msa0516720 | 0.804258 | 2.354660e-49 | -8.615850e-47 |
| Msa0007770 | Msa0697060 | 0.800792 | 1.220707e-48 | -8.615850e-47 |
| Msa0007770 | Msa0766630 | 0.815011 | 1.150230e-51 | -8.615850e-47 |
| Msa0007770 | Msa0880140 | 0.807641 | 4.576750e-50 | -8.615850e-47 |
| Msa0007770 | Msa0885280 | 0.813152 | 2.958156e-51 | -8.615850e-47 |
| Msa0007770 | Msa0975220 | 0.802149 | 6.433925e-49 | -8.615850e-47 |
| Msa0007770 | Msa1014540 | 0.814617 | 1.406395e-51 | -8.615850e-47 |
| Msa0007770 | Msa1121490 | 0.815982 | 6.992186e-52 | -8.615850e-47 |
| Msa0007770 | Msa1252140 | 0.824488 | 7.854961e-54 | -8.615850e-47 |
| Msa0007770 | Msa1466540 | 0.805668 | 1.194704e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007770 | MtrunA17_Chr4g0052601 | 39.089 | 417 | 200 | 6 | 10 | 378 | 13 | 423 | 3.65e-100 | 311 |
| Msa0007770 | MtrunA17_Chr8g0354631 | 29.803 | 557 | 332 | 8 | 56 | 558 | 151 | 702 | 8.27e-78 | 261 |
| Msa0007770 | MtrunA17_Chr8g0359341 | 29.295 | 553 | 338 | 12 | 56 | 568 | 177 | 716 | 2.06e-67 | 233 |
| Msa0007770 | MtrunA17_Chr2g0308821 | 27.807 | 561 | 340 | 12 | 48 | 558 | 113 | 658 | 4.66e-63 | 219 |
| Msa0007770 | MtrunA17_Chr7g0263231 | 26.203 | 561 | 344 | 11 | 59 | 567 | 536 | 1078 | 2.82e-62 | 223 |
| Msa0007770 | MtrunA17_Chr8g0383081 | 27.664 | 535 | 327 | 9 | 71 | 560 | 33 | 552 | 6.74e-59 | 206 |
| Msa0007770 | MtrunA17_Chr7g0263261 | 25.312 | 561 | 349 | 11 | 59 | 567 | 477 | 1019 | 3.39e-58 | 210 |
| Msa0007770 | MtrunA17_Chr5g0402891 | 29.708 | 377 | 259 | 3 | 58 | 434 | 38 | 408 | 2.56e-56 | 200 |
| Msa0007770 | MtrunA17_Chr5g0402891 | 40.000 | 85 | 50 | 1 | 475 | 558 | 494 | 578 | 2.02e-15 | 79.7 |
| Msa0007770 | MtrunA17_Chr2g0333261 | 25.801 | 562 | 339 | 12 | 56 | 559 | 138 | 679 | 8.49e-53 | 192 |
| Msa0007770 | MtrunA17_Chr4g0052681 | 26.594 | 549 | 317 | 13 | 73 | 560 | 37 | 560 | 1.79e-52 | 189 |
| Msa0007770 | MtrunA17_Chr8g0383041 | 28.942 | 501 | 280 | 14 | 115 | 560 | 78 | 557 | 2.39e-52 | 189 |
| Msa0007770 | MtrunA17_Chr8g0383211 | 26.523 | 558 | 344 | 16 | 55 | 560 | 94 | 637 | 6.29e-49 | 181 |
| Msa0007770 | MtrunA17_Chr4g0003151 | 24.205 | 566 | 353 | 13 | 59 | 568 | 122 | 667 | 6.44e-46 | 172 |
| Msa0007770 | MtrunA17_Chr8g0383071 | 30.345 | 290 | 177 | 6 | 132 | 411 | 35 | 309 | 4.19e-36 | 137 |
| Msa0007770 | MtrunA17_Chr8g0383051 | 30.466 | 279 | 176 | 6 | 71 | 344 | 48 | 313 | 2.41e-35 | 135 |
| Msa0007770 | MtrunA17_Chr4g0052611 | 33.473 | 239 | 114 | 5 | 387 | 583 | 1 | 236 | 1.98e-33 | 128 |
| Msa0007770 | MtrunA17_Chr4g0062411 | 22.662 | 556 | 347 | 18 | 68 | 574 | 146 | 667 | 1.66e-21 | 99.0 |
| Msa0007770 | MtrunA17_Chr5g0408131 | 26.457 | 223 | 114 | 8 | 382 | 560 | 4 | 220 | 3.21e-17 | 81.6 |
| Msa0007770 | MtrunA17_Chr4g0053391 | 28.063 | 253 | 135 | 7 | 348 | 560 | 1 | 246 | 4.11e-17 | 82.0 |
| Msa0007770 | MtrunA17_Chr8g0383181 | 28.372 | 215 | 136 | 7 | 51 | 251 | 81 | 291 | 6.09e-17 | 82.0 |
| Msa0007770 | MtrunA17_Chr3g0108001 | 38.889 | 72 | 44 | 0 | 489 | 560 | 4 | 75 | 7.50e-12 | 62.4 |
| Msa0007770 | MtrunA17_Chr1g0192041 | 28.221 | 163 | 91 | 4 | 294 | 444 | 62 | 210 | 7.69e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007770 | AT3G42170.2 | 26.554 | 531 | 343 | 10 | 59 | 558 | 138 | 652 | 2.83e-60 | 213 |
| Msa0007770 | AT3G42170.1 | 26.554 | 531 | 343 | 10 | 59 | 558 | 160 | 674 | 3.39e-60 | 213 |
| Msa0007770 | AT1G18560.1 | 20.896 | 536 | 352 | 15 | 68 | 558 | 141 | 649 | 1.82e-18 | 89.7 |
Find 116 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATCAGCATTGGGAAAA+TGG | 0.209507 | 1_1:-11026989 | Msa0007770:CDS |
| ATATATATGTTAGAGGTATT+TGG | 0.219690 | 1_1:-11027091 | Msa0007770:CDS |
| AAGGATGCTTGCTCTTTATT+TGG | 0.223250 | 1_1:-11026242 | Msa0007770:three_prime_UTR |
| CTATTCCTGATGATTGATTA+AGG | 0.224562 | 1_1:-11026261 | Msa0007770:exon |
| AGAAAGATAAATTGCTTAAA+AGG | 0.227245 | 1_1:+11026184 | None:intergenic |
| CCCACTTTATTGATAATAAC+TGG | 0.245886 | 1_1:-11027744 | Msa0007770:CDS |
| TCATTCTCTACAAATGAAAT+AGG | 0.255352 | 1_1:+11027973 | None:intergenic |
| ATCTGAGCTAAATAAGTATT+TGG | 0.262489 | 1_1:-11026682 | Msa0007770:CDS |
| TACAGAGACCTCTGAGGATT+TGG | 0.278990 | 1_1:-11026652 | Msa0007770:CDS |
| AGGATTTGGATATCTTAAAT+TGG | 0.281436 | 1_1:-11026638 | Msa0007770:CDS |
| TGCACACATGATTGGCTATA+TGG | 0.290733 | 1_1:-11026450 | Msa0007770:CDS |
| GTTGCGTTCAAACAAGGATT+TGG | 0.301184 | 1_1:-11026415 | Msa0007770:CDS |
| TGACTTTATTGAAGAGAATC+AGG | 0.331103 | 1_1:-11028190 | Msa0007770:CDS |
| ACATCTTAACAAGTTCATTC+TGG | 0.335369 | 1_1:+11028013 | None:intergenic |
| AGGTCGTTCACCAGAGTATA+TGG | 0.346065 | 1_1:-11027683 | Msa0007770:CDS |
| TCACCAGAGTATATGGAATA+TGG | 0.350785 | 1_1:-11027676 | Msa0007770:CDS |
| CGAAACTCAATCCAACTATA+AGG | 0.355335 | 1_1:+11026729 | None:intergenic |
| CTAGCAATGTTTGCAAGGAT+TGG | 0.374653 | 1_1:+11026591 | None:intergenic |
| ATAATCAGCATTGGGAAAAT+GGG | 0.377180 | 1_1:-11026988 | Msa0007770:CDS |
| AAACATTGCTAGAGAGGCTT+TGG | 0.377745 | 1_1:-11026580 | Msa0007770:CDS |
| TTGCTCTTGTATTTGATCCT+AGG | 0.382221 | 1_1:-11026931 | Msa0007770:CDS |
| GTATCATCGGCTCGCTTTGT+TGG | 0.389838 | 1_1:-11028132 | Msa0007770:CDS |
| AGTGATGAAACACTAAATTT+CGG | 0.391221 | 1_1:+11027919 | None:intergenic |
| TATCATCGGCTCGCTTTGTT+GGG | 0.392928 | 1_1:-11028131 | Msa0007770:CDS |
| GTGATGCAGTTCAATATATA+AGG | 0.395146 | 1_1:-11027426 | Msa0007770:CDS |
| CAAGTGCACACTCAGACGTT+AGG | 0.395447 | 1_1:+11026541 | None:intergenic |
| TAGTACTATATATATGTTAG+AGG | 0.405205 | 1_1:-11027098 | Msa0007770:CDS |
| ATGTTAGAGGTATTTGGAAT+TGG | 0.409033 | 1_1:-11027085 | Msa0007770:CDS |
| TCATCTCCTTCTATATTGTC+TGG | 0.409357 | 1_1:-11027403 | Msa0007770:CDS |
| TCAAATCCAGACAATATAGA+AGG | 0.422190 | 1_1:+11027397 | None:intergenic |
| TATAGTACTAGTAACATTAG+AGG | 0.424234 | 1_1:+11027111 | None:intergenic |
| TCTCTTCAATAAAGTCATCT+TGG | 0.424426 | 1_1:+11028196 | None:intergenic |
| TATGTTCACAAGTTAGAAAA+GGG | 0.425796 | 1_1:-11027229 | Msa0007770:CDS |
| AGCATCCTTAATCAATCATC+AGG | 0.443542 | 1_1:+11026256 | None:intergenic |
| ATAGAGATCGGTCAGATGAT+TGG | 0.447056 | 1_1:-11028107 | Msa0007770:CDS |
| TTGAGTGGTGCTTGAATGCT+TGG | 0.450691 | 1_1:-11027651 | Msa0007770:CDS |
| CACTTGTCTGCACACATGAT+TGG | 0.451463 | 1_1:-11026458 | Msa0007770:CDS |
| TCCAGTTATTATCAATAAAG+TGG | 0.451646 | 1_1:+11027743 | None:intergenic |
| CTTTCAAAACGAAGGTGTCC+AGG | 0.454859 | 1_1:+11027542 | None:intergenic |
| TAGAGATCGGTCAGATGATT+GGG | 0.457439 | 1_1:-11028106 | Msa0007770:CDS |
| GTATGTTCACAAGTTAGAAA+AGG | 0.457559 | 1_1:-11027230 | Msa0007770:CDS |
| AGAATTTCAAAAGTTTCTAA+AGG | 0.458618 | 1_1:-11027950 | Msa0007770:CDS |
| TTATCAGATTCGATGCTTAA+CGG | 0.458691 | 1_1:-11027578 | Msa0007770:CDS |
| AAAGCATCAAAGGGCATTTG+AGG | 0.459348 | 1_1:-11027275 | Msa0007770:CDS |
| GTAAAGACGATCCTTATAGT+TGG | 0.473110 | 1_1:-11026740 | Msa0007770:CDS |
| GAATTTGTCATATGAGATGT+TGG | 0.477507 | 1_1:-11027308 | Msa0007770:CDS |
| TAGCTATACAGTGTACATTC+AGG | 0.477783 | 1_1:+11027029 | None:intergenic |
| GTTCATTCTGGCAAGCCTCT+TGG | 0.483141 | 1_1:+11028025 | None:intergenic |
| GCTTAAAAGGAAATGAACCT+TGG | 0.489695 | 1_1:+11026197 | None:intergenic |
| ACAGTGTACATTCAGGTCCT+TGG | 0.500152 | 1_1:+11027036 | None:intergenic |
| ATATATCCAACTTTGTACCT+AGG | 0.508334 | 1_1:+11026914 | None:intergenic |
| CAAGAAAAGATTGAAAGTAA+AGG | 0.510008 | 1_1:-11027361 | Msa0007770:CDS |
| GGAGGTACTATAATCAGCAT+TGG | 0.511459 | 1_1:-11026997 | Msa0007770:CDS |
| GAGGTACTATAATCAGCATT+GGG | 0.511698 | 1_1:-11026996 | Msa0007770:CDS |
| CCTTGCAAACATTGCTAGAG+AGG | 0.513647 | 1_1:-11026586 | Msa0007770:CDS |
| AAGTCATCTTGGTCACTCAT+TGG | 0.513648 | 1_1:+11028207 | None:intergenic |
| TAGTGTTTCATCACTCTCAC+AGG | 0.515767 | 1_1:-11027911 | Msa0007770:CDS |
| ATGGTAACATTAAGTAAGCC+TGG | 0.516061 | 1_1:+11027176 | None:intergenic |
| AGAATCACTGTATTAATCCA+AGG | 0.522453 | 1_1:-11026214 | Msa0007770:three_prime_UTR |
| TGGTTCCAATCTTCATATGT+AGG | 0.525965 | 1_1:+11027196 | None:intergenic |
| GTGTTCCTACATATGAAGAT+TGG | 0.528784 | 1_1:-11027201 | Msa0007770:CDS |
| AGGCTGCTTTAAAGCATCAA+AGG | 0.529819 | 1_1:-11027285 | Msa0007770:CDS |
| TTGAACATGTAATATCTAGT+TGG | 0.531858 | 1_1:+11026290 | None:intergenic |
| AAAGCACAATTTGATGAAGA+AGG | 0.531971 | 1_1:-11026762 | Msa0007770:CDS |
| GCTTTGTTGGGCATAGAGAT+CGG | 0.532380 | 1_1:-11028119 | Msa0007770:CDS |
| GGTCCTTGGAATGACACAAC+TGG | 0.532443 | 1_1:+11027050 | None:intergenic |
| GGCTGCTTTAAAGCATCAAA+GGG | 0.533188 | 1_1:-11027284 | Msa0007770:CDS |
| TGAGCTAAATAAGTATTTGG+AGG | 0.533278 | 1_1:-11026679 | Msa0007770:CDS |
| AAGTGCACACTCAGACGTTA+GGG | 0.533658 | 1_1:+11026542 | None:intergenic |
| GTATTGTTAGAGCCAAGTGC+TGG | 0.534057 | 1_1:+11028159 | None:intergenic |
| ACTGTATAGCTATAACGATA+AGG | 0.534309 | 1_1:-11027018 | Msa0007770:CDS |
| CAGGTTGCTACTCCAGCACT+TGG | 0.535820 | 1_1:-11028171 | Msa0007770:CDS |
| CTAACGTCTGAGTGTGCACT+TGG | 0.537303 | 1_1:-11026540 | Msa0007770:CDS |
| TACAAATGAAATAGGAATGT+CGG | 0.537906 | 1_1:+11027981 | None:intergenic |
| TCACTTTACTGAAGAGCAAA+GGG | 0.540001 | 1_1:-11028082 | Msa0007770:CDS |
| CTAAACTTTCTTCCAACCGT+AGG | 0.546817 | 1_1:-11027703 | Msa0007770:CDS |
| TCAATCATCAGGAATAGTAA+AGG | 0.549034 | 1_1:+11026267 | None:intergenic |
| TAACAATACTAGTGTATCAT+CGG | 0.549701 | 1_1:-11028145 | Msa0007770:CDS |
| AGCAAAGGGATGGAAGCAAA+AGG | 0.552546 | 1_1:-11028068 | Msa0007770:CDS |
| AAGTAAAGGATATGTTTACA+TGG | 0.552999 | 1_1:-11027347 | Msa0007770:CDS |
| TAGCCAGTTGTGTCATTCCA+AGG | 0.555432 | 1_1:-11027053 | Msa0007770:CDS |
| CCTCTCTAGCAATGTTTGCA+AGG | 0.555542 | 1_1:+11026586 | None:intergenic |
| CCAGTTATTATCAATAAAGT+GGG | 0.556998 | 1_1:+11027744 | None:intergenic |
| TTTGAACATGATATTGAAGG+AGG | 0.558830 | 1_1:-11027485 | Msa0007770:CDS |
| ATACTCTGGTGAACGACCTA+CGG | 0.562055 | 1_1:+11027687 | None:intergenic |
| TGAGTGGTGCTTGAATGCTT+GGG | 0.563487 | 1_1:-11027650 | Msa0007770:CDS |
| ATCTGACAAGTTTGACCAAG+AGG | 0.567863 | 1_1:-11028040 | Msa0007770:CDS |
| ATCACTTTACTGAAGAGCAA+AGG | 0.574572 | 1_1:-11028083 | Msa0007770:CDS |
| ATACCATATTCCATATACTC+TGG | 0.575540 | 1_1:+11027673 | None:intergenic |
| ATTTGGATATCTTAAATTGG+TGG | 0.579061 | 1_1:-11026635 | Msa0007770:CDS |
| TCTGGTGAACGACCTACGGT+TGG | 0.582038 | 1_1:+11027691 | None:intergenic |
| GTAATCTCCTTTCAAAACGA+AGG | 0.582588 | 1_1:+11027534 | None:intergenic |
| TTTACATGGATATTGAAACT+AGG | 0.588702 | 1_1:-11027333 | Msa0007770:CDS |
| TAATCAGCATTGGGAAAATG+GGG | 0.601883 | 1_1:-11026987 | Msa0007770:CDS |
| TACATATGAAGATTGGAACC+AGG | 0.602507 | 1_1:-11027194 | Msa0007770:CDS |
| TCAGACGTTAGGGTTGAGAC+AGG | 0.607399 | 1_1:+11026552 | None:intergenic |
| AGCTTTCTTGCACAACATTG+TGG | 0.614198 | 1_1:-11027832 | Msa0007770:CDS |
| GATTTGGAAAAGCTTAAGCA+AGG | 0.625887 | 1_1:-11026399 | Msa0007770:intron |
| TTTCAAAACGAAGGTGTCCA+GGG | 0.627557 | 1_1:+11027543 | None:intergenic |
| AACGGAAAAGTTAATGACCC+TGG | 0.627726 | 1_1:-11027560 | Msa0007770:CDS |
| TTTACTGAAGAGCAAAGGGA+TGG | 0.630323 | 1_1:-11028078 | Msa0007770:CDS |
| TCACAAGTTAGAAAAGGGGA+AGG | 0.641530 | 1_1:-11027224 | Msa0007770:CDS |
| TTTGCCTCAGCATTGACACA+TGG | 0.648207 | 1_1:-11027804 | Msa0007770:CDS |
| TTTGTCATATGAGATGTTGG+AGG | 0.654353 | 1_1:-11027305 | Msa0007770:CDS |
| CGAATCTGATAATCATATCG+AGG | 0.655355 | 1_1:+11027589 | None:intergenic |
| ACATGGATATTGAAACTAGG+TGG | 0.659888 | 1_1:-11027330 | Msa0007770:CDS |
| AAATGAAATAGGAATGTCGG+TGG | 0.664317 | 1_1:+11027984 | None:intergenic |
| ATGTTCACAAGTTAGAAAAG+GGG | 0.664602 | 1_1:-11027228 | Msa0007770:CDS |
| TGCACTTGGTAATAATGCAA+AGG | 0.665864 | 1_1:-11026526 | Msa0007770:CDS |
| CACAAGTTAGAAAAGGGGAA+GGG | 0.669099 | 1_1:-11027223 | Msa0007770:CDS |
| GGAAGATACAGAGACCTCTG+AGG | 0.684881 | 1_1:-11026658 | Msa0007770:CDS |
| AATCAGCATTGGGAAAATGG+GGG | 0.686655 | 1_1:-11026986 | Msa0007770:CDS |
| TAAGATATCCAAATCCTCAG+AGG | 0.694535 | 1_1:+11026644 | None:intergenic |
| GTATAGCTATAACGATAAGG+AGG | 0.694807 | 1_1:-11027015 | Msa0007770:CDS |
| AAGTCCATGTGTCAATGCTG+AGG | 0.713105 | 1_1:+11027800 | None:intergenic |
| ATATGGAATATGGTATTGAG+TGG | 0.720405 | 1_1:-11027666 | Msa0007770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATTTCAAAAGTTTCTAA+AGG | - | chr1_1:11026429-11026448 | Msa0007770:CDS | 20.0% |
| !!! | TCATGATATTTTAACTCTAT+GGG | - | chr1_1:11026501-11026520 | Msa0007770:CDS | 20.0% |
| !!! | TATTTTGAACATGATATTGA+AGG | - | chr1_1:11026891-11026910 | Msa0007770:intron | 20.0% |
| !! | TAGTACTATATATATGTTAG+AGG | - | chr1_1:11027281-11027300 | Msa0007770:CDS | 20.0% |
| !!! | ATATATATGTTAGAGGTATT+TGG | - | chr1_1:11027288-11027307 | Msa0007770:CDS | 20.0% |
| !! | ACAAAGTTGGATATATAAAT+TGG | - | chr1_1:11027472-11027491 | Msa0007770:CDS | 20.0% |
| !! | AGAAAGATAAATTGCTTAAA+AGG | + | chr1_1:11028198-11028217 | None:intergenic | 20.0% |
| !! | AGAATTTCAAAAGTTTCTAA+AGG | - | chr1_1:11026429-11026448 | Msa0007770:CDS | 20.0% |
| !!! | TCATGATATTTTAACTCTAT+GGG | - | chr1_1:11026501-11026520 | Msa0007770:CDS | 20.0% |
| !!! | TATTTTGAACATGATATTGA+AGG | - | chr1_1:11026891-11026910 | Msa0007770:intron | 20.0% |
| !! | TAGTACTATATATATGTTAG+AGG | - | chr1_1:11027281-11027300 | Msa0007770:CDS | 20.0% |
| !!! | ATATATATGTTAGAGGTATT+TGG | - | chr1_1:11027288-11027307 | Msa0007770:CDS | 20.0% |
| !! | ACAAAGTTGGATATATAAAT+TGG | - | chr1_1:11027472-11027491 | Msa0007770:CDS | 20.0% |
| !! | AGAAAGATAAATTGCTTAAA+AGG | + | chr1_1:11028198-11028217 | None:intergenic | 20.0% |
| ! | TAACAATACTAGTGTATCAT+CGG | - | chr1_1:11026234-11026253 | Msa0007770:three_prime_UTR | 25.0% |
| ! | TACAAATGAAATAGGAATGT+CGG | + | chr1_1:11026401-11026420 | None:intergenic | 25.0% |
| ! | TCATTCTCTACAAATGAAAT+AGG | + | chr1_1:11026409-11026428 | None:intergenic | 25.0% |
| ! | AGTGATGAAACACTAAATTT+CGG | + | chr1_1:11026463-11026482 | None:intergenic | 25.0% |
| !!! | CTCATGATATTTTAACTCTA+TGG | - | chr1_1:11026500-11026519 | Msa0007770:CDS | 25.0% |
| ! | CCAGTTATTATCAATAAAGT+GGG | + | chr1_1:11026638-11026657 | None:intergenic | 25.0% |
| ! | TCCAGTTATTATCAATAAAG+TGG | + | chr1_1:11026639-11026658 | None:intergenic | 25.0% |
| ! | CAAGAAAAGATTGAAAGTAA+AGG | - | chr1_1:11027018-11027037 | Msa0007770:CDS | 25.0% |
| ! | AAGTAAAGGATATGTTTACA+TGG | - | chr1_1:11027032-11027051 | Msa0007770:CDS | 25.0% |
| ! | TTTACATGGATATTGAAACT+AGG | - | chr1_1:11027046-11027065 | Msa0007770:CDS | 25.0% |
| ! | TATGTTCACAAGTTAGAAAA+GGG | - | chr1_1:11027150-11027169 | Msa0007770:CDS | 25.0% |
| ! | TCATGAAAGATCTTCAAAAA+TGG | + | chr1_1:11027225-11027244 | None:intergenic | 25.0% |
| ! | TATAGTACTAGTAACATTAG+AGG | + | chr1_1:11027271-11027290 | None:intergenic | 25.0% |
| !!! | TCAGATTTTTAATTCAGTTG+AGG | - | chr1_1:11027503-11027522 | Msa0007770:CDS | 25.0% |
| ! | CATCATTATATTCCTCAAAA+GGG | + | chr1_1:11027568-11027587 | None:intergenic | 25.0% |
| ! | ATCTGAGCTAAATAAGTATT+TGG | - | chr1_1:11027697-11027716 | Msa0007770:CDS | 25.0% |
| ! | AGGATTTGGATATCTTAAAT+TGG | - | chr1_1:11027741-11027760 | Msa0007770:CDS | 25.0% |
| ! | ATTTGGATATCTTAAATTGG+TGG | - | chr1_1:11027744-11027763 | Msa0007770:CDS | 25.0% |
| !! | AGAAAACATGATGCTTATTT+TGG | - | chr1_1:11028005-11028024 | Msa0007770:CDS | 25.0% |
| ! | TTGAACATGTAATATCTAGT+TGG | + | chr1_1:11028092-11028111 | None:intergenic | 25.0% |
| ! | TAACAATACTAGTGTATCAT+CGG | - | chr1_1:11026234-11026253 | Msa0007770:three_prime_UTR | 25.0% |
| ! | TACAAATGAAATAGGAATGT+CGG | + | chr1_1:11026401-11026420 | None:intergenic | 25.0% |
| ! | TCATTCTCTACAAATGAAAT+AGG | + | chr1_1:11026409-11026428 | None:intergenic | 25.0% |
| ! | AGTGATGAAACACTAAATTT+CGG | + | chr1_1:11026463-11026482 | None:intergenic | 25.0% |
| !!! | CTCATGATATTTTAACTCTA+TGG | - | chr1_1:11026500-11026519 | Msa0007770:CDS | 25.0% |
| ! | CCAGTTATTATCAATAAAGT+GGG | + | chr1_1:11026638-11026657 | None:intergenic | 25.0% |
| ! | TCCAGTTATTATCAATAAAG+TGG | + | chr1_1:11026639-11026658 | None:intergenic | 25.0% |
| ! | CAAGAAAAGATTGAAAGTAA+AGG | - | chr1_1:11027018-11027037 | Msa0007770:CDS | 25.0% |
| ! | AAGTAAAGGATATGTTTACA+TGG | - | chr1_1:11027032-11027051 | Msa0007770:CDS | 25.0% |
| ! | TTTACATGGATATTGAAACT+AGG | - | chr1_1:11027046-11027065 | Msa0007770:CDS | 25.0% |
| ! | TATGTTCACAAGTTAGAAAA+GGG | - | chr1_1:11027150-11027169 | Msa0007770:CDS | 25.0% |
| ! | TCATGAAAGATCTTCAAAAA+TGG | + | chr1_1:11027225-11027244 | None:intergenic | 25.0% |
| ! | TATAGTACTAGTAACATTAG+AGG | + | chr1_1:11027271-11027290 | None:intergenic | 25.0% |
| !!! | TCAGATTTTTAATTCAGTTG+AGG | - | chr1_1:11027503-11027522 | Msa0007770:CDS | 25.0% |
| ! | CATCATTATATTCCTCAAAA+GGG | + | chr1_1:11027568-11027587 | None:intergenic | 25.0% |
| ! | ATCTGAGCTAAATAAGTATT+TGG | - | chr1_1:11027697-11027716 | Msa0007770:CDS | 25.0% |
| ! | AGGATTTGGATATCTTAAAT+TGG | - | chr1_1:11027741-11027760 | Msa0007770:CDS | 25.0% |
| ! | ATTTGGATATCTTAAATTGG+TGG | - | chr1_1:11027744-11027763 | Msa0007770:CDS | 25.0% |
| !! | AGAAAACATGATGCTTATTT+TGG | - | chr1_1:11028005-11028024 | Msa0007770:CDS | 25.0% |
| ! | TTGAACATGTAATATCTAGT+TGG | + | chr1_1:11028092-11028111 | None:intergenic | 25.0% |
| TCTCTTCAATAAAGTCATCT+TGG | + | chr1_1:11026186-11026205 | None:intergenic | 30.0% | |
| TGACTTTATTGAAGAGAATC+AGG | - | chr1_1:11026189-11026208 | Msa0007770:three_prime_UTR | 30.0% | |
| ACATCTTAACAAGTTCATTC+TGG | + | chr1_1:11026369-11026388 | None:intergenic | 30.0% | |
| ! | CCCACTTTATTGATAATAAC+TGG | - | chr1_1:11026635-11026654 | Msa0007770:CDS | 30.0% |
| ATACCATATTCCATATACTC+TGG | + | chr1_1:11026709-11026728 | None:intergenic | 30.0% | |
| ! | ATATGGAATATGGTATTGAG+TGG | - | chr1_1:11026713-11026732 | Msa0007770:CDS | 30.0% |
| TTATCAGATTCGATGCTTAA+CGG | - | chr1_1:11026801-11026820 | Msa0007770:CDS | 30.0% | |
| TTTGAACATGATATTGAAGG+AGG | - | chr1_1:11026894-11026913 | Msa0007770:intron | 30.0% | |
| GTGATGCAGTTCAATATATA+AGG | - | chr1_1:11026953-11026972 | Msa0007770:CDS | 30.0% | |
| TCAAATCCAGACAATATAGA+AGG | + | chr1_1:11026985-11027004 | None:intergenic | 30.0% | |
| GAATTTGTCATATGAGATGT+TGG | - | chr1_1:11027071-11027090 | Msa0007770:CDS | 30.0% | |
| ! | ACTTTTTGTCATGTAACTCA+AGG | + | chr1_1:11027131-11027150 | None:intergenic | 30.0% |
| GTATGTTCACAAGTTAGAAA+AGG | - | chr1_1:11027149-11027168 | Msa0007770:CDS | 30.0% | |
| ATGTTCACAAGTTAGAAAAG+GGG | - | chr1_1:11027151-11027170 | Msa0007770:CDS | 30.0% | |
| !! | ATGTTAGAGGTATTTGGAAT+TGG | - | chr1_1:11027294-11027313 | Msa0007770:CDS | 30.0% |
| ACTGTATAGCTATAACGATA+AGG | - | chr1_1:11027361-11027380 | Msa0007770:CDS | 30.0% | |
| ! | TATAATCAGCATTGGGAAAA+TGG | - | chr1_1:11027390-11027409 | Msa0007770:CDS | 30.0% |
| ! | ATAATCAGCATTGGGAAAAT+GGG | - | chr1_1:11027391-11027410 | Msa0007770:CDS | 30.0% |
| ATATATCCAACTTTGTACCT+AGG | + | chr1_1:11027468-11027487 | None:intergenic | 30.0% | |
| CCATCATTATATTCCTCAAA+AGG | + | chr1_1:11027569-11027588 | None:intergenic | 30.0% | |
| !! | CCTTTTGAGGAATATAATGA+TGG | - | chr1_1:11027566-11027585 | Msa0007770:CDS | 30.0% |
| AAAGCACAATTTGATGAAGA+AGG | - | chr1_1:11027617-11027636 | Msa0007770:CDS | 30.0% | |
| TGAGCTAAATAAGTATTTGG+AGG | - | chr1_1:11027700-11027719 | Msa0007770:CDS | 30.0% | |
| !!! | CATGATGCTTATTTTGGAAA+AGG | - | chr1_1:11028011-11028030 | Msa0007770:CDS | 30.0% |
| ! | TTTTTGTCTTTGTGCAGAAA+TGG | - | chr1_1:11028062-11028081 | Msa0007770:CDS | 30.0% |
| TCAATCATCAGGAATAGTAA+AGG | + | chr1_1:11028115-11028134 | None:intergenic | 30.0% | |
| CTATTCCTGATGATTGATTA+AGG | - | chr1_1:11028118-11028137 | Msa0007770:CDS | 30.0% | |
| AGAATCACTGTATTAATCCA+AGG | - | chr1_1:11028165-11028184 | Msa0007770:CDS | 30.0% | |
| TCTCTTCAATAAAGTCATCT+TGG | + | chr1_1:11026186-11026205 | None:intergenic | 30.0% | |
| TGACTTTATTGAAGAGAATC+AGG | - | chr1_1:11026189-11026208 | Msa0007770:three_prime_UTR | 30.0% | |
| ACATCTTAACAAGTTCATTC+TGG | + | chr1_1:11026369-11026388 | None:intergenic | 30.0% | |
| ! | CCCACTTTATTGATAATAAC+TGG | - | chr1_1:11026635-11026654 | Msa0007770:CDS | 30.0% |
| ATACCATATTCCATATACTC+TGG | + | chr1_1:11026709-11026728 | None:intergenic | 30.0% | |
| ! | ATATGGAATATGGTATTGAG+TGG | - | chr1_1:11026713-11026732 | Msa0007770:CDS | 30.0% |
| TTATCAGATTCGATGCTTAA+CGG | - | chr1_1:11026801-11026820 | Msa0007770:CDS | 30.0% | |
| TTTGAACATGATATTGAAGG+AGG | - | chr1_1:11026894-11026913 | Msa0007770:intron | 30.0% | |
| GTGATGCAGTTCAATATATA+AGG | - | chr1_1:11026953-11026972 | Msa0007770:CDS | 30.0% | |
| TCAAATCCAGACAATATAGA+AGG | + | chr1_1:11026985-11027004 | None:intergenic | 30.0% | |
| GAATTTGTCATATGAGATGT+TGG | - | chr1_1:11027071-11027090 | Msa0007770:CDS | 30.0% | |
| ! | ACTTTTTGTCATGTAACTCA+AGG | + | chr1_1:11027131-11027150 | None:intergenic | 30.0% |
| GTATGTTCACAAGTTAGAAA+AGG | - | chr1_1:11027149-11027168 | Msa0007770:CDS | 30.0% | |
| ATGTTCACAAGTTAGAAAAG+GGG | - | chr1_1:11027151-11027170 | Msa0007770:CDS | 30.0% | |
| !! | ATGTTAGAGGTATTTGGAAT+TGG | - | chr1_1:11027294-11027313 | Msa0007770:CDS | 30.0% |
| ACTGTATAGCTATAACGATA+AGG | - | chr1_1:11027361-11027380 | Msa0007770:CDS | 30.0% | |
| ! | TATAATCAGCATTGGGAAAA+TGG | - | chr1_1:11027390-11027409 | Msa0007770:CDS | 30.0% |
| ! | ATAATCAGCATTGGGAAAAT+GGG | - | chr1_1:11027391-11027410 | Msa0007770:CDS | 30.0% |
| ATATATCCAACTTTGTACCT+AGG | + | chr1_1:11027468-11027487 | None:intergenic | 30.0% | |
| CCATCATTATATTCCTCAAA+AGG | + | chr1_1:11027569-11027588 | None:intergenic | 30.0% | |
| !! | CCTTTTGAGGAATATAATGA+TGG | - | chr1_1:11027566-11027585 | Msa0007770:CDS | 30.0% |
| AAAGCACAATTTGATGAAGA+AGG | - | chr1_1:11027617-11027636 | Msa0007770:CDS | 30.0% | |
| TGAGCTAAATAAGTATTTGG+AGG | - | chr1_1:11027700-11027719 | Msa0007770:CDS | 30.0% | |
| !!! | CATGATGCTTATTTTGGAAA+AGG | - | chr1_1:11028011-11028030 | Msa0007770:CDS | 30.0% |
| ! | TTTTTGTCTTTGTGCAGAAA+TGG | - | chr1_1:11028062-11028081 | Msa0007770:CDS | 30.0% |
| TCAATCATCAGGAATAGTAA+AGG | + | chr1_1:11028115-11028134 | None:intergenic | 30.0% | |
| CTATTCCTGATGATTGATTA+AGG | - | chr1_1:11028118-11028137 | Msa0007770:CDS | 30.0% | |
| AGAATCACTGTATTAATCCA+AGG | - | chr1_1:11028165-11028184 | Msa0007770:CDS | 30.0% | |
| ATCACTTTACTGAAGAGCAA+AGG | - | chr1_1:11026296-11026315 | Msa0007770:CDS | 35.0% | |
| TCACTTTACTGAAGAGCAAA+GGG | - | chr1_1:11026297-11026316 | Msa0007770:CDS | 35.0% | |
| AAATGAAATAGGAATGTCGG+TGG | + | chr1_1:11026398-11026417 | None:intergenic | 35.0% | |
| TCACCAGAGTATATGGAATA+TGG | - | chr1_1:11026703-11026722 | Msa0007770:CDS | 35.0% | |
| GTTAGACTAAAAATGCGACT+CGG | + | chr1_1:11026757-11026776 | None:intergenic | 35.0% | |
| CGAATCTGATAATCATATCG+AGG | + | chr1_1:11026793-11026812 | None:intergenic | 35.0% | |
| GTAATCTCCTTTCAAAACGA+AGG | + | chr1_1:11026848-11026867 | None:intergenic | 35.0% | |
| TCATCTCCTTCTATATTGTC+TGG | - | chr1_1:11026976-11026995 | Msa0007770:CDS | 35.0% | |
| ACATGGATATTGAAACTAGG+TGG | - | chr1_1:11027049-11027068 | Msa0007770:CDS | 35.0% | |
| TTTGTCATATGAGATGTTGG+AGG | - | chr1_1:11027074-11027093 | Msa0007770:CDS | 35.0% | |
| GTGTTCCTACATATGAAGAT+TGG | - | chr1_1:11027178-11027197 | Msa0007770:CDS | 35.0% | |
| TGGTTCCAATCTTCATATGT+AGG | + | chr1_1:11027186-11027205 | None:intergenic | 35.0% | |
| TACATATGAAGATTGGAACC+AGG | - | chr1_1:11027185-11027204 | Msa0007770:CDS | 35.0% | |
| ATGGTAACATTAAGTAAGCC+TGG | + | chr1_1:11027206-11027225 | None:intergenic | 35.0% | |
| TAGCTATACAGTGTACATTC+AGG | + | chr1_1:11027353-11027372 | None:intergenic | 35.0% | |
| GTATAGCTATAACGATAAGG+AGG | - | chr1_1:11027364-11027383 | Msa0007770:CDS | 35.0% | |
| ! | GAGGTACTATAATCAGCATT+GGG | - | chr1_1:11027383-11027402 | Msa0007770:CDS | 35.0% |
| ! | TAATCAGCATTGGGAAAATG+GGG | - | chr1_1:11027392-11027411 | Msa0007770:CDS | 35.0% |
| TTGCTCTTGTATTTGATCCT+AGG | - | chr1_1:11027448-11027467 | Msa0007770:CDS | 35.0% | |
| TTTGATCCTAGGTACAAAGT+TGG | - | chr1_1:11027459-11027478 | Msa0007770:CDS | 35.0% | |
| !! | CTTGTTTGAAATCCCTTTTG+AGG | - | chr1_1:11027553-11027572 | Msa0007770:CDS | 35.0% |
| GTAAAGACGATCCTTATAGT+TGG | - | chr1_1:11027639-11027658 | Msa0007770:CDS | 35.0% | |
| CGAAACTCAATCCAACTATA+AGG | + | chr1_1:11027653-11027672 | None:intergenic | 35.0% | |
| TAAGATATCCAAATCCTCAG+AGG | + | chr1_1:11027738-11027757 | None:intergenic | 35.0% | |
| ! | TGCACTTGGTAATAATGCAA+AGG | - | chr1_1:11027853-11027872 | Msa0007770:CDS | 35.0% |
| GATTTGGAAAAGCTTAAGCA+AGG | - | chr1_1:11027980-11027999 | Msa0007770:CDS | 35.0% | |
| AGCATCCTTAATCAATCATC+AGG | + | chr1_1:11028126-11028145 | None:intergenic | 35.0% | |
| AAGGATGCTTGCTCTTTATT+TGG | - | chr1_1:11028137-11028156 | Msa0007770:CDS | 35.0% | |
| GCTTAAAAGGAAATGAACCT+TGG | + | chr1_1:11028185-11028204 | None:intergenic | 35.0% | |
| ATCACTTTACTGAAGAGCAA+AGG | - | chr1_1:11026296-11026315 | Msa0007770:CDS | 35.0% | |
| TCACTTTACTGAAGAGCAAA+GGG | - | chr1_1:11026297-11026316 | Msa0007770:CDS | 35.0% | |
| AAATGAAATAGGAATGTCGG+TGG | + | chr1_1:11026398-11026417 | None:intergenic | 35.0% | |
| TCACCAGAGTATATGGAATA+TGG | - | chr1_1:11026703-11026722 | Msa0007770:CDS | 35.0% | |
| GTTAGACTAAAAATGCGACT+CGG | + | chr1_1:11026757-11026776 | None:intergenic | 35.0% | |
| CGAATCTGATAATCATATCG+AGG | + | chr1_1:11026793-11026812 | None:intergenic | 35.0% | |
| GTAATCTCCTTTCAAAACGA+AGG | + | chr1_1:11026848-11026867 | None:intergenic | 35.0% | |
| TCATCTCCTTCTATATTGTC+TGG | - | chr1_1:11026976-11026995 | Msa0007770:CDS | 35.0% | |
| ACATGGATATTGAAACTAGG+TGG | - | chr1_1:11027049-11027068 | Msa0007770:CDS | 35.0% | |
| TTTGTCATATGAGATGTTGG+AGG | - | chr1_1:11027074-11027093 | Msa0007770:CDS | 35.0% | |
| GTGTTCCTACATATGAAGAT+TGG | - | chr1_1:11027178-11027197 | Msa0007770:CDS | 35.0% | |
| TGGTTCCAATCTTCATATGT+AGG | + | chr1_1:11027186-11027205 | None:intergenic | 35.0% | |
| TACATATGAAGATTGGAACC+AGG | - | chr1_1:11027185-11027204 | Msa0007770:CDS | 35.0% | |
| ATGGTAACATTAAGTAAGCC+TGG | + | chr1_1:11027206-11027225 | None:intergenic | 35.0% | |
| TAGCTATACAGTGTACATTC+AGG | + | chr1_1:11027353-11027372 | None:intergenic | 35.0% | |
| GTATAGCTATAACGATAAGG+AGG | - | chr1_1:11027364-11027383 | Msa0007770:CDS | 35.0% | |
| ! | GAGGTACTATAATCAGCATT+GGG | - | chr1_1:11027383-11027402 | Msa0007770:CDS | 35.0% |
| ! | TAATCAGCATTGGGAAAATG+GGG | - | chr1_1:11027392-11027411 | Msa0007770:CDS | 35.0% |
| TTGCTCTTGTATTTGATCCT+AGG | - | chr1_1:11027448-11027467 | Msa0007770:CDS | 35.0% | |
| TTTGATCCTAGGTACAAAGT+TGG | - | chr1_1:11027459-11027478 | Msa0007770:CDS | 35.0% | |
| !! | CTTGTTTGAAATCCCTTTTG+AGG | - | chr1_1:11027553-11027572 | Msa0007770:CDS | 35.0% |
| GTAAAGACGATCCTTATAGT+TGG | - | chr1_1:11027639-11027658 | Msa0007770:CDS | 35.0% | |
| CGAAACTCAATCCAACTATA+AGG | + | chr1_1:11027653-11027672 | None:intergenic | 35.0% | |
| TAAGATATCCAAATCCTCAG+AGG | + | chr1_1:11027738-11027757 | None:intergenic | 35.0% | |
| ! | TGCACTTGGTAATAATGCAA+AGG | - | chr1_1:11027853-11027872 | Msa0007770:CDS | 35.0% |
| GATTTGGAAAAGCTTAAGCA+AGG | - | chr1_1:11027980-11027999 | Msa0007770:CDS | 35.0% | |
| AGCATCCTTAATCAATCATC+AGG | + | chr1_1:11028126-11028145 | None:intergenic | 35.0% | |
| AAGGATGCTTGCTCTTTATT+TGG | - | chr1_1:11028137-11028156 | Msa0007770:CDS | 35.0% | |
| GCTTAAAAGGAAATGAACCT+TGG | + | chr1_1:11028185-11028204 | None:intergenic | 35.0% | |
| ATAGAGATCGGTCAGATGAT+TGG | - | chr1_1:11026272-11026291 | Msa0007770:CDS | 40.0% | |
| TAGAGATCGGTCAGATGATT+GGG | - | chr1_1:11026273-11026292 | Msa0007770:CDS | 40.0% | |
| TTTACTGAAGAGCAAAGGGA+TGG | - | chr1_1:11026301-11026320 | Msa0007770:CDS | 40.0% | |
| ATCTGACAAGTTTGACCAAG+AGG | - | chr1_1:11026339-11026358 | Msa0007770:intron | 40.0% | |
| TAGTGTTTCATCACTCTCAC+AGG | - | chr1_1:11026468-11026487 | Msa0007770:CDS | 40.0% | |
| AGCTTTCTTGCACAACATTG+TGG | - | chr1_1:11026547-11026566 | Msa0007770:CDS | 40.0% | |
| CTAAACTTTCTTCCAACCGT+AGG | - | chr1_1:11026676-11026695 | Msa0007770:CDS | 40.0% | |
| AACGGAAAAGTTAATGACCC+TGG | - | chr1_1:11026819-11026838 | Msa0007770:intron | 40.0% | |
| !! | TTTCAAAACGAAGGTGTCCA+GGG | + | chr1_1:11026839-11026858 | None:intergenic | 40.0% |
| !! | AGGCTGCTTTAAAGCATCAA+AGG | - | chr1_1:11027094-11027113 | Msa0007770:CDS | 40.0% |
| !! | GGCTGCTTTAAAGCATCAAA+GGG | - | chr1_1:11027095-11027114 | Msa0007770:CDS | 40.0% |
| !! | AAAGCATCAAAGGGCATTTG+AGG | - | chr1_1:11027104-11027123 | Msa0007770:CDS | 40.0% |
| TCACAAGTTAGAAAAGGGGA+AGG | - | chr1_1:11027155-11027174 | Msa0007770:CDS | 40.0% | |
| CACAAGTTAGAAAAGGGGAA+GGG | - | chr1_1:11027156-11027175 | Msa0007770:CDS | 40.0% | |
| !! | GGAGGTACTATAATCAGCAT+TGG | - | chr1_1:11027382-11027401 | Msa0007770:CDS | 40.0% |
| ! | AATCAGCATTGGGAAAATGG+GGG | - | chr1_1:11027393-11027412 | Msa0007770:CDS | 40.0% |
| ! | AGGCAGCTAATTTGAAACAG+AGG | - | chr1_1:11027523-11027542 | Msa0007770:CDS | 40.0% |
| CTAGCAATGTTTGCAAGGAT+TGG | + | chr1_1:11027791-11027810 | None:intergenic | 40.0% | |
| AAACATTGCTAGAGAGGCTT+TGG | - | chr1_1:11027799-11027818 | Msa0007770:CDS | 40.0% | |
| ! | TGCACACATGATTGGCTATA+TGG | - | chr1_1:11027929-11027948 | Msa0007770:CDS | 40.0% |
| ! | CTTTTCGTTGCGTTCAAACA+AGG | - | chr1_1:11027958-11027977 | Msa0007770:CDS | 40.0% |
| GTTGCGTTCAAACAAGGATT+TGG | - | chr1_1:11027964-11027983 | Msa0007770:CDS | 40.0% | |
| ATAGAGATCGGTCAGATGAT+TGG | - | chr1_1:11026272-11026291 | Msa0007770:CDS | 40.0% | |
| TAGAGATCGGTCAGATGATT+GGG | - | chr1_1:11026273-11026292 | Msa0007770:CDS | 40.0% | |
| TTTACTGAAGAGCAAAGGGA+TGG | - | chr1_1:11026301-11026320 | Msa0007770:CDS | 40.0% | |
| ATCTGACAAGTTTGACCAAG+AGG | - | chr1_1:11026339-11026358 | Msa0007770:intron | 40.0% | |
| TAGTGTTTCATCACTCTCAC+AGG | - | chr1_1:11026468-11026487 | Msa0007770:CDS | 40.0% | |
| AGCTTTCTTGCACAACATTG+TGG | - | chr1_1:11026547-11026566 | Msa0007770:CDS | 40.0% | |
| CTAAACTTTCTTCCAACCGT+AGG | - | chr1_1:11026676-11026695 | Msa0007770:CDS | 40.0% | |
| AACGGAAAAGTTAATGACCC+TGG | - | chr1_1:11026819-11026838 | Msa0007770:intron | 40.0% | |
| !! | TTTCAAAACGAAGGTGTCCA+GGG | + | chr1_1:11026839-11026858 | None:intergenic | 40.0% |
| !! | AGGCTGCTTTAAAGCATCAA+AGG | - | chr1_1:11027094-11027113 | Msa0007770:CDS | 40.0% |
| !! | GGCTGCTTTAAAGCATCAAA+GGG | - | chr1_1:11027095-11027114 | Msa0007770:CDS | 40.0% |
| !! | AAAGCATCAAAGGGCATTTG+AGG | - | chr1_1:11027104-11027123 | Msa0007770:CDS | 40.0% |
| TCACAAGTTAGAAAAGGGGA+AGG | - | chr1_1:11027155-11027174 | Msa0007770:CDS | 40.0% | |
| CACAAGTTAGAAAAGGGGAA+GGG | - | chr1_1:11027156-11027175 | Msa0007770:CDS | 40.0% | |
| !! | GGAGGTACTATAATCAGCAT+TGG | - | chr1_1:11027382-11027401 | Msa0007770:CDS | 40.0% |
| ! | AATCAGCATTGGGAAAATGG+GGG | - | chr1_1:11027393-11027412 | Msa0007770:CDS | 40.0% |
| ! | AGGCAGCTAATTTGAAACAG+AGG | - | chr1_1:11027523-11027542 | Msa0007770:CDS | 40.0% |
| CTAGCAATGTTTGCAAGGAT+TGG | + | chr1_1:11027791-11027810 | None:intergenic | 40.0% | |
| AAACATTGCTAGAGAGGCTT+TGG | - | chr1_1:11027799-11027818 | Msa0007770:CDS | 40.0% | |
| ! | TGCACACATGATTGGCTATA+TGG | - | chr1_1:11027929-11027948 | Msa0007770:CDS | 40.0% |
| ! | CTTTTCGTTGCGTTCAAACA+AGG | - | chr1_1:11027958-11027977 | Msa0007770:CDS | 40.0% |
| GTTGCGTTCAAACAAGGATT+TGG | - | chr1_1:11027964-11027983 | Msa0007770:CDS | 40.0% | |
| GTATTGTTAGAGCCAAGTGC+TGG | + | chr1_1:11026223-11026242 | None:intergenic | 45.0% | |
| !! | TATCATCGGCTCGCTTTGTT+GGG | - | chr1_1:11026248-11026267 | Msa0007770:exon | 45.0% |
| ! | GCTTTGTTGGGCATAGAGAT+CGG | - | chr1_1:11026260-11026279 | Msa0007770:exon | 45.0% |
| AGCAAAGGGATGGAAGCAAA+AGG | - | chr1_1:11026311-11026330 | Msa0007770:intron | 45.0% | |
| !! | TTTGCCTCAGCATTGACACA+TGG | - | chr1_1:11026575-11026594 | Msa0007770:CDS | 45.0% |
| AAGTCCATGTGTCAATGCTG+AGG | + | chr1_1:11026582-11026601 | None:intergenic | 45.0% | |
| ATACTCTGGTGAACGACCTA+CGG | + | chr1_1:11026695-11026714 | None:intergenic | 45.0% | |
| AGGTCGTTCACCAGAGTATA+TGG | - | chr1_1:11026696-11026715 | Msa0007770:CDS | 45.0% | |
| TTGAGTGGTGCTTGAATGCT+TGG | - | chr1_1:11026728-11026747 | Msa0007770:CDS | 45.0% | |
| TGAGTGGTGCTTGAATGCTT+GGG | - | chr1_1:11026729-11026748 | Msa0007770:CDS | 45.0% | |
| !! | CTTTCAAAACGAAGGTGTCC+AGG | + | chr1_1:11026840-11026859 | None:intergenic | 45.0% |
| !! | CTGGACACCTTCGTTTTGAA+AGG | - | chr1_1:11026838-11026857 | Msa0007770:intron | 45.0% |
| ! | TAGCCAGTTGTGTCATTCCA+AGG | - | chr1_1:11027326-11027345 | Msa0007770:CDS | 45.0% |
| ACAGTGTACATTCAGGTCCT+TGG | + | chr1_1:11027346-11027365 | None:intergenic | 45.0% | |
| ! | TACAGAGACCTCTGAGGATT+TGG | - | chr1_1:11027727-11027746 | Msa0007770:CDS | 45.0% |
| CCTCTCTAGCAATGTTTGCA+AGG | + | chr1_1:11027796-11027815 | None:intergenic | 45.0% | |
| CCTTGCAAACATTGCTAGAG+AGG | - | chr1_1:11027793-11027812 | Msa0007770:CDS | 45.0% | |
| AAGTGCACACTCAGACGTTA+GGG | + | chr1_1:11027840-11027859 | None:intergenic | 45.0% | |
| CACTTGTCTGCACACATGAT+TGG | - | chr1_1:11027921-11027940 | Msa0007770:CDS | 45.0% | |
| GTATTGTTAGAGCCAAGTGC+TGG | + | chr1_1:11026223-11026242 | None:intergenic | 45.0% | |
| !! | TATCATCGGCTCGCTTTGTT+GGG | - | chr1_1:11026248-11026267 | Msa0007770:exon | 45.0% |
| ! | GCTTTGTTGGGCATAGAGAT+CGG | - | chr1_1:11026260-11026279 | Msa0007770:exon | 45.0% |
| AGCAAAGGGATGGAAGCAAA+AGG | - | chr1_1:11026311-11026330 | Msa0007770:intron | 45.0% | |
| !! | TTTGCCTCAGCATTGACACA+TGG | - | chr1_1:11026575-11026594 | Msa0007770:CDS | 45.0% |
| AAGTCCATGTGTCAATGCTG+AGG | + | chr1_1:11026582-11026601 | None:intergenic | 45.0% | |
| ATACTCTGGTGAACGACCTA+CGG | + | chr1_1:11026695-11026714 | None:intergenic | 45.0% | |
| AGGTCGTTCACCAGAGTATA+TGG | - | chr1_1:11026696-11026715 | Msa0007770:CDS | 45.0% | |
| TTGAGTGGTGCTTGAATGCT+TGG | - | chr1_1:11026728-11026747 | Msa0007770:CDS | 45.0% | |
| TGAGTGGTGCTTGAATGCTT+GGG | - | chr1_1:11026729-11026748 | Msa0007770:CDS | 45.0% | |
| !! | CTTTCAAAACGAAGGTGTCC+AGG | + | chr1_1:11026840-11026859 | None:intergenic | 45.0% |
| !! | CTGGACACCTTCGTTTTGAA+AGG | - | chr1_1:11026838-11026857 | Msa0007770:intron | 45.0% |
| ! | TAGCCAGTTGTGTCATTCCA+AGG | - | chr1_1:11027326-11027345 | Msa0007770:CDS | 45.0% |
| ACAGTGTACATTCAGGTCCT+TGG | + | chr1_1:11027346-11027365 | None:intergenic | 45.0% | |
| ! | TACAGAGACCTCTGAGGATT+TGG | - | chr1_1:11027727-11027746 | Msa0007770:CDS | 45.0% |
| CCTCTCTAGCAATGTTTGCA+AGG | + | chr1_1:11027796-11027815 | None:intergenic | 45.0% | |
| CCTTGCAAACATTGCTAGAG+AGG | - | chr1_1:11027793-11027812 | Msa0007770:CDS | 45.0% | |
| AAGTGCACACTCAGACGTTA+GGG | + | chr1_1:11027840-11027859 | None:intergenic | 45.0% | |
| CACTTGTCTGCACACATGAT+TGG | - | chr1_1:11027921-11027940 | Msa0007770:CDS | 45.0% | |
| !! | GTATCATCGGCTCGCTTTGT+TGG | - | chr1_1:11026247-11026266 | Msa0007770:three_prime_UTR | 50.0% |
| GTTCATTCTGGCAAGCCTCT+TGG | + | chr1_1:11026357-11026376 | None:intergenic | 50.0% | |
| GGTCCTTGGAATGACACAAC+TGG | + | chr1_1:11027332-11027351 | None:intergenic | 50.0% | |
| GGAAGATACAGAGACCTCTG+AGG | - | chr1_1:11027721-11027740 | Msa0007770:CDS | 50.0% | |
| TCAGACGTTAGGGTTGAGAC+AGG | + | chr1_1:11027830-11027849 | None:intergenic | 50.0% | |
| CAAGTGCACACTCAGACGTT+AGG | + | chr1_1:11027841-11027860 | None:intergenic | 50.0% | |
| CTAACGTCTGAGTGTGCACT+TGG | - | chr1_1:11027839-11027858 | Msa0007770:CDS | 50.0% | |
| !! | GTATCATCGGCTCGCTTTGT+TGG | - | chr1_1:11026247-11026266 | Msa0007770:three_prime_UTR | 50.0% |
| GTTCATTCTGGCAAGCCTCT+TGG | + | chr1_1:11026357-11026376 | None:intergenic | 50.0% | |
| GGTCCTTGGAATGACACAAC+TGG | + | chr1_1:11027332-11027351 | None:intergenic | 50.0% | |
| GGAAGATACAGAGACCTCTG+AGG | - | chr1_1:11027721-11027740 | Msa0007770:CDS | 50.0% | |
| TCAGACGTTAGGGTTGAGAC+AGG | + | chr1_1:11027830-11027849 | None:intergenic | 50.0% | |
| CAAGTGCACACTCAGACGTT+AGG | + | chr1_1:11027841-11027860 | None:intergenic | 50.0% | |
| CTAACGTCTGAGTGTGCACT+TGG | - | chr1_1:11027839-11027858 | Msa0007770:CDS | 50.0% | |
| CAGGTTGCTACTCCAGCACT+TGG | - | chr1_1:11026208-11026227 | Msa0007770:three_prime_UTR | 55.0% | |
| TCTGGTGAACGACCTACGGT+TGG | + | chr1_1:11026691-11026710 | None:intergenic | 55.0% | |
| CAGGTTGCTACTCCAGCACT+TGG | - | chr1_1:11026208-11026227 | Msa0007770:three_prime_UTR | 55.0% | |
| TCTGGTGAACGACCTACGGT+TGG | + | chr1_1:11026691-11026710 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 11026175 | 11028226 | 11026175 | ID=Msa0007770;Name=Msa0007770 |
| chr1_1 | mRNA | 11026175 | 11028226 | 11026175 | ID=Msa0007770-mRNA-1;Parent=Msa0007770;Name=Msa0007770-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0.5|0.33|0.66|1|1|3|92|594 |
| chr1_1 | exon | 11026175 | 11026322 | 11026175 | ID=Msa0007770-mRNA-1:exon:4112;Parent=Msa0007770-mRNA-1 |
| chr1_1 | exon | 11026400 | 11026826 | 11026400 | ID=Msa0007770-mRNA-1:exon:4111;Parent=Msa0007770-mRNA-1 |
| chr1_1 | exon | 11026925 | 11028226 | 11026925 | ID=Msa0007770-mRNA-1:exon:4110;Parent=Msa0007770-mRNA-1 |
| chr1_1 | CDS | 11026925 | 11028226 | 11026925 | ID=Msa0007770-mRNA-1:cds;Parent=Msa0007770-mRNA-1 |
| chr1_1 | CDS | 11026400 | 11026826 | 11026400 | ID=Msa0007770-mRNA-1:cds;Parent=Msa0007770-mRNA-1 |
| chr1_1 | CDS | 11026267 | 11026322 | 11026267 | ID=Msa0007770-mRNA-1:cds;Parent=Msa0007770-mRNA-1 |
| chr1_1 | three_prime_UTR | 11026175 | 11026266 | 11026175 | ID=Msa0007770-mRNA-1:three_prime_utr;Parent=Msa0007770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
