AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0257460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257460 MtrunA17_Chr6g0453811 96.923 65 2 0 60 124 1 65 6.33e-40 127
Msa0257460 MtrunA17_Chr4g0041861 87.692 65 8 0 60 124 1 65 5.25e-35 115
Msa0257460 MtrunA17_Chr6g0453911 80.000 65 12 1 60 124 1 64 6.73e-30 102
Msa0257460 MtrunA17_Chr8g0381481 69.231 65 8 1 60 124 1 53 1.31e-23 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257460 AT5G03850.1 87.692 65 7 1 60 124 1 64 2.32e-33 111
Msa0257460 AT3G10090.1 87.692 65 7 1 60 124 1 64 2.32e-33 111
Msa0257460 AT5G64140.1 86.154 65 8 1 60 124 1 64 1.84e-32 109

Find 32 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCTGTAGTTTCCTTCTT+AGG 0.272811 2_2:-53340107 Msa0257460:CDS
ACGATCCGAAACAATGTTAT+TGG 0.299870 2_2:+53342736 None:intergenic
CATTTCCATACGCAGCTTCC+AGG 0.335998 2_2:-53340158 Msa0257460:intron
CTTGAAGTTGGTTCCTAAGA+AGG 0.395968 2_2:+53340094 None:intergenic
CGCGACCAATAACATTGTTT+CGG 0.401717 2_2:-53342741 Msa0257460:CDS
AGTGCCATGGCAGCCTAAAA+TGG 0.420025 2_2:-53342798 Msa0257460:CDS
GCTGTTGTTCTGAAAGTTAT+GGG 0.425758 2_2:-53338709 Msa0257460:CDS
AGAATGTATCCCTCCCTAAC+TGG 0.428755 2_2:+53338598 None:intergenic
GGTCGCGGATGGAGGCAATA+TGG 0.431061 2_2:+53342757 None:intergenic
TGCTGTTGTTCTGAAAGTTA+TGG 0.438519 2_2:-53338710 Msa0257460:CDS
CTGAAAGTTATGGGTCGTAC+TGG 0.463760 2_2:-53338700 Msa0257460:CDS
GAATGTGAAGGGACCAGTTA+GGG 0.464736 2_2:-53338611 Msa0257460:CDS
AACCTGAGTGACTTGTCCTC+TGG 0.467654 2_2:+53338675 None:intergenic
GGAATGTGAAGGGACCAGTT+AGG 0.473428 2_2:-53338612 Msa0257460:CDS
TTGCTTCTCTCTCAGACTCA+AGG 0.498678 2_2:+53338569 None:intergenic
GAGAGAAACGAACTTGAAGT+TGG 0.507890 2_2:+53340082 None:intergenic
CGAAACAATGTTATTGGTCG+CGG 0.543436 2_2:+53342742 None:intergenic
ACAATGTTATTGGTCGCGGA+TGG 0.543932 2_2:+53342746 None:intergenic
ATGTTATTGGTCGCGGATGG+AGG 0.569661 2_2:+53342749 None:intergenic
AATTGATTGCGATGAAACCC+TGG 0.578530 2_2:+53340140 None:intergenic
TGTGAAGGGACCAGTTAGGG+AGG 0.582336 2_2:-53338608 Msa0257460:CDS
ATCAGAATCGTCACATCATG+AGG 0.585221 2_2:-53338633 Msa0257460:CDS
CTTCTCTCTCAGACTCAAGG+AGG 0.589933 2_2:+53338572 None:intergenic
ATTTCCATACGCAGCTTCCA+GGG 0.594196 2_2:-53340157 Msa0257460:intron
GGAAACTACAGAATCAGCGT+TGG 0.600658 2_2:+53340115 None:intergenic
TCACATCATGAGGAATGTGA+AGG 0.626309 2_2:-53338623 Msa0257460:CDS
CACATCATGAGGAATGTGAA+GGG 0.632733 2_2:-53338622 Msa0257460:CDS
ATCCAGAGGACAAGTCACTC+AGG 0.638739 2_2:-53338677 Msa0257460:CDS
TTCTCTCTCAGACTCAAGGA+GGG 0.640280 2_2:+53338573 None:intergenic
GTGAAGGGACCAGTTAGGGA+GGG 0.657315 2_2:-53338607 Msa0257460:CDS
ATGGGTCGTACTGGATCCAG+AGG 0.663896 2_2:-53338691 Msa0257460:CDS
TGTGAAGGATGGCAGTGCCA+TGG 0.664085 2_2:-53342811 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAACTAAATAAATTAAAT+AGG + chr2_2:53338776-53338795 None:intergenic 10.0%
!!! TATTTTAATTTGTAACAAAA+CGG + chr2_2:53339312-53339331 None:intergenic 10.0%
!!! ATAGAAAAATTTATTTTGAT+TGG - chr2_2:53339583-53339602 Msa0257460:intron 10.0%
!!! TAGAAAAATTTATTTTGATT+GGG - chr2_2:53339584-53339603 Msa0257460:intron 10.0%
!!! AAATTGAATTTTATAATCTA+AGG - chr2_2:53340808-53340827 Msa0257460:intron 10.0%
!!! AATTGAATTTTATAATCTAA+GGG - chr2_2:53340809-53340828 Msa0257460:intron 10.0%
!! TTGAAAATATTATTTAACAT+AGG - chr2_2:53340955-53340974 Msa0257460:intron 10.0%
!! TGAAAATATTATTTAACATA+GGG - chr2_2:53340956-53340975 Msa0257460:intron 10.0%
!! TCAAAATCAAAAAATTAATT+TGG + chr2_2:53341369-53341388 None:intergenic 10.0%
!! AACTTTAAATTAAACAAATT+TGG + chr2_2:53341488-53341507 None:intergenic 10.0%
!! TCTCATTTATAAATTATACA+CGG + chr2_2:53338821-53338840 None:intergenic 15.0%
!!! TTTTTTGACAAAAAAAACAT+AGG + chr2_2:53338944-53338963 None:intergenic 15.0%
!!! TTTAAAGAGGTTTTTTTTTT+TGG + chr2_2:53339273-53339292 None:intergenic 15.0%
!!! ATTTTAATTTGTAACAAAAC+GGG + chr2_2:53339311-53339330 None:intergenic 15.0%
!!! ATTTTTAAGAGAGAAAATAT+AGG - chr2_2:53339714-53339733 Msa0257460:intron 15.0%
!!! TTTTTAAGAGAGAAAATATA+GGG - chr2_2:53339715-53339734 Msa0257460:intron 15.0%
!! ATAAAAGAGAAAAAAAATAG+AGG - chr2_2:53339943-53339962 Msa0257460:intron 15.0%
!! TAAAAGAGAAAAAAAATAGA+GGG - chr2_2:53339944-53339963 Msa0257460:intron 15.0%
!! AAAGAATAATTGCTAAATTT+AGG + chr2_2:53340111-53340130 None:intergenic 15.0%
!!! AGCTTTTTTCTTTTTTTTTT+TGG - chr2_2:53340619-53340638 Msa0257460:intron 15.0%
!!! GCTTTTTTCTTTTTTTTTTT+GGG - chr2_2:53340620-53340639 Msa0257460:intron 15.0%
!! AATTAGAAATTAAATTAACG+TGG - chr2_2:53340734-53340753 Msa0257460:intron 15.0%
!! TATTTAATTAAAATAAGCAG+TGG - chr2_2:53340886-53340905 Msa0257460:intron 15.0%
!! GAAAATATTATTTAACATAG+GGG - chr2_2:53340957-53340976 Msa0257460:intron 15.0%
!!! AATTTTTCTTATTCAGATTT+GGG + chr2_2:53341170-53341189 None:intergenic 15.0%
!!! TAATTTTTCTTATTCAGATT+TGG + chr2_2:53341171-53341190 None:intergenic 15.0%
!! AAATCTGAATAAGAAAAATT+AGG - chr2_2:53341170-53341189 Msa0257460:intron 15.0%
!! AATCTGAATAAGAAAAATTA+GGG - chr2_2:53341171-53341190 Msa0257460:intron 15.0%
!!! TTTTGATTTTGATTTTTTCA+TGG - chr2_2:53341377-53341396 Msa0257460:intron 15.0%
!!! TTTAAAGTTGTAATATATGT+TGG - chr2_2:53341499-53341518 Msa0257460:intron 15.0%
!!! TATAGTGATTTGATTTTAAA+TGG - chr2_2:53341575-53341594 Msa0257460:intron 15.0%
!! CTAAACAAACTAGTTATTAA+TGG + chr2_2:53338668-53338687 None:intergenic 20.0%
!!! CATTAATAACTAGTTTGTTT+AGG - chr2_2:53338666-53338685 Msa0257460:CDS 20.0%
!! TCATTTATAAATTATACACG+GGG + chr2_2:53338819-53338838 None:intergenic 20.0%
!! CTCATTTATAAATTATACAC+GGG + chr2_2:53338820-53338839 None:intergenic 20.0%
!!! TTTTTTTTTTTGGACAAAAG+AGG + chr2_2:53339263-53339282 None:intergenic 20.0%
!!! AAATCACGATTTATTTTGTT+TGG - chr2_2:53339374-53339393 Msa0257460:intron 20.0%
!! TGGATACAACTATAAAAAAA+TGG - chr2_2:53339440-53339459 Msa0257460:intron 20.0%
!! AAAAAAAGATTAAGTTAGAG+TGG - chr2_2:53339633-53339652 Msa0257460:intron 20.0%
!!! AGAGTGGTTTTTTTTTTTTT+TGG - chr2_2:53339649-53339668 Msa0257460:intron 20.0%
!!! TTTTAAGAGAGAAAATATAG+GGG - chr2_2:53339716-53339735 Msa0257460:intron 20.0%
!! ATGACTCAAAAAATTAAGAA+GGG - chr2_2:53339779-53339798 Msa0257460:intron 20.0%
!! ACACATTAAGTTTCATAATT+AGG - chr2_2:53339823-53339842 Msa0257460:intron 20.0%
!! CACATTAAGTTTCATAATTA+GGG - chr2_2:53339824-53339843 Msa0257460:intron 20.0%
!! ATGTGTCAAAAAATTAAGAA+GGG - chr2_2:53340006-53340025 Msa0257460:intron 20.0%
!!! GTAGACATTAAGTTTTATAA+CGG - chr2_2:53340046-53340065 Msa0257460:intron 20.0%
!!! TAGACATTAAGTTTTATAAC+GGG - chr2_2:53340047-53340066 Msa0257460:intron 20.0%
!! CATATGTAAATTAAAAATGC+TGG - chr2_2:53340693-53340712 Msa0257460:intron 20.0%
!!! CTAAAAGTATAGATCAATAA+AGG + chr2_2:53341315-53341334 None:intergenic 20.0%
!!! CTTAATTGTGTTTTTAGTTT+TGG - chr2_2:53341435-53341454 Msa0257460:intron 20.0%
!!! TTTAACTAGAATAACCATTT+TGG - chr2_2:53341684-53341703 Msa0257460:intron 20.0%
!!! TTAACTAGAATAACCATTTT+GGG - chr2_2:53341685-53341704 Msa0257460:intron 20.0%
!!! AAATCTGATTTTAAAATGTG+TGG - chr2_2:53341807-53341826 Msa0257460:intron 20.0%
!! AATTGTAATCATACACAAAT+AGG - chr2_2:53342156-53342175 Msa0257460:intron 20.0%
!!! TTAAGCTTCACTTTATTTTT+TGG + chr2_2:53342427-53342446 None:intergenic 20.0%
!! TTCCATGTTTTTCTAAGTAT+CGG - chr2_2:53339007-53339026 Msa0257460:intron 25.0%
! TTTAAGAGAGAAAATATAGG+GGG - chr2_2:53339717-53339736 Msa0257460:intron 25.0%
! GATGACTCAAAAAATTAAGA+AGG - chr2_2:53339778-53339797 Msa0257460:intron 25.0%
! TGACTCAAAAAATTAAGAAG+GGG - chr2_2:53339780-53339799 Msa0257460:intron 25.0%
! GATGTGTCAAAAAATTAAGA+AGG - chr2_2:53340005-53340024 Msa0257460:intron 25.0%
! TGTGTCAAAAAATTAAGAAG+GGG - chr2_2:53340007-53340026 Msa0257460:intron 25.0%
!! TGATAAGCTGTATTTTCATA+AGG - chr2_2:53340588-53340607 Msa0257460:intron 25.0%
!!! TTTTCATGGTTGATTTATGT+TGG - chr2_2:53341391-53341410 Msa0257460:intron 25.0%
! TGGAAATTGTAGATTAGATT+TGG - chr2_2:53341455-53341474 Msa0257460:intron 25.0%
!! TTTCTCTGACATATTGATTA+TGG - chr2_2:53341620-53341639 Msa0257460:intron 25.0%
!! TTCTCTGACATATTGATTAT+GGG - chr2_2:53341621-53341640 Msa0257460:intron 25.0%
!!! ATTTTAAAATGTGTGGATTG+TGG - chr2_2:53341814-53341833 Msa0257460:intron 25.0%
!!! TTGATTGCTTTTATTGTGTT+TGG - chr2_2:53342376-53342395 Msa0257460:intron 25.0%
!! AGCCTAAAATGGTTGATTTT+TGG - chr2_2:53338571-53338590 Msa0257460:CDS 30.0%
! AGCCAAAAATCAACCATTTT+AGG + chr2_2:53338576-53338595 None:intergenic 30.0%
GTTATTTGTGCTCATTCAAT+TGG - chr2_2:53338868-53338887 Msa0257460:intron 30.0%
TACCGATACTTAGAAAAACA+TGG + chr2_2:53339012-53339031 None:intergenic 30.0%
ATGATTATAACCACCTCTTT+AGG - chr2_2:53339228-53339247 Msa0257460:intron 30.0%
!! CGGAATTGTTCTTTTTAAAG+AGG + chr2_2:53339286-53339305 None:intergenic 30.0%
! AATTTGTAACAAAACGGGTT+CGG + chr2_2:53339306-53339325 None:intergenic 30.0%
AAGAGAAAAAAAATAGAGGG+AGG - chr2_2:53339947-53339966 Msa0257460:intron 30.0%
GTTGAAACAAAAGACACAAA+AGG - chr2_2:53339969-53339988 Msa0257460:intron 30.0%
GCATCAATGATAATTTGAGA+TGG + chr2_2:53340502-53340521 None:intergenic 30.0%
TCAAATTATCATTGATGCCT+TGG - chr2_2:53340504-53340523 Msa0257460:intron 30.0%
GCTATTTGTAGATAGAGAAT+GGG - chr2_2:53340529-53340548 Msa0257460:intron 30.0%
ACCATGAAAACGATTAGAAA+TGG - chr2_2:53340650-53340669 Msa0257460:intron 30.0%
! ACCATTTCTAATCGTTTTCA+TGG + chr2_2:53340654-53340673 None:intergenic 30.0%
AGAAATAGAGTAGATTTGAG+GGG + chr2_2:53341057-53341076 None:intergenic 30.0%
GAGAAATAGAGTAGATTTGA+GGG + chr2_2:53341058-53341077 None:intergenic 30.0%
TGAGAAATAGAGTAGATTTG+AGG + chr2_2:53341059-53341078 None:intergenic 30.0%
TTTGGGTATCTATTCTCTAA+GGG + chr2_2:53341153-53341172 None:intergenic 30.0%
ATTTGGGTATCTATTCTCTA+AGG + chr2_2:53341154-53341173 None:intergenic 30.0%
AGAATTAACACAACCCAAAA+TGG + chr2_2:53341701-53341720 None:intergenic 30.0%
AACAAACTAGATTCAGCTTA+AGG - chr2_2:53341875-53341894 Msa0257460:intron 30.0%
ATTGAGAAGCTGAATTTAGT+AGG - chr2_2:53341993-53342012 Msa0257460:intron 30.0%
ATAATATACATACACAAGCC+AGG - chr2_2:53342091-53342110 Msa0257460:intron 30.0%
! GAAATCAGCTTCTCATTTTA+AGG + chr2_2:53342182-53342201 None:intergenic 30.0%
! AATCAGCTTCTCATTTTACA+AGG + chr2_2:53342244-53342263 None:intergenic 30.0%
! GATAAGAAAGTGATTTTCAG+TGG - chr2_2:53342496-53342515 Msa0257460:intron 30.0%
ACACTTTCACAATTGTTTAG+AGG + chr2_2:53342599-53342618 None:intergenic 30.0%
ACGATCCGAAACAATGTTAT+TGG + chr2_2:53338625-53338644 None:intergenic 35.0%
! ACATTGTTTCGGATCGTTTT+TGG - chr2_2:53338628-53338647 Msa0257460:CDS 35.0%
! TTAATTTTCACTTCCGATGC+AGG - chr2_2:53338748-53338767 Msa0257460:intron 35.0%
AATTAAATAGGCACCTGCAT+CGG + chr2_2:53338764-53338783 None:intergenic 35.0%
! AAGGGGTAAGACTGTATTTT+TGG - chr2_2:53340024-53340043 Msa0257460:intron 35.0%
AGTAGAGAGAAATAGAGTAG+AGG - chr2_2:53340286-53340305 Msa0257460:intron 35.0%
AGAGAAATAGAGTAGAGGTT+TGG - chr2_2:53340291-53340310 Msa0257460:intron 35.0%
!! GGTTTGGTCTTTCTTTTGTT+TGG - chr2_2:53340307-53340326 Msa0257460:intron 35.0%
GAGACAGATTAAAAAGCCAT+GGG - chr2_2:53340348-53340367 Msa0257460:intron 35.0%
AGAAACTAGGTAGAAGACAA+GGG + chr2_2:53340453-53340472 None:intergenic 35.0%
TAGAAACTAGGTAGAAGACA+AGG + chr2_2:53340454-53340473 None:intergenic 35.0%
CGCTATTTGTAGATAGAGAA+TGG - chr2_2:53340528-53340547 Msa0257460:intron 35.0%
ATTTGTAGATAGAGAATGGG+TGG - chr2_2:53340532-53340551 Msa0257460:intron 35.0%
GAAGTTGTGAAGAGAGAAAT+AGG + chr2_2:53341112-53341131 None:intergenic 35.0%
GATTCTGTAGTTTCCTTCTT+AGG - chr2_2:53341251-53341270 Msa0257460:intron 35.0%
TCAACAAATTAAGCTGATCC+TGG + chr2_2:53342112-53342131 None:intergenic 35.0%
TGAAGCTTAATTCAGTAGCT+TGG - chr2_2:53342437-53342456 Msa0257460:intron 35.0%
CAATTGTTTAGAGGAAAGCA+AGG + chr2_2:53342590-53342609 None:intergenic 35.0%
!! AATTGTGAAAGTGTTTGAGC+AGG - chr2_2:53342605-53342624 Msa0257460:intron 35.0%
!! TGCTGTTGTTCTGAAAGTTA+TGG - chr2_2:53342648-53342667 Msa0257460:intron 35.0%
!! GCTGTTGTTCTGAAAGTTAT+GGG - chr2_2:53342649-53342668 Msa0257460:intron 35.0%
! TCAGGTTAGAGTGAAGTTTT+TGG - chr2_2:53342699-53342718 Msa0257460:intron 35.0%
CGAAACAATGTTATTGGTCG+CGG + chr2_2:53338619-53338638 None:intergenic 40.0%
CGCGACCAATAACATTGTTT+CGG - chr2_2:53338617-53338636 Msa0257460:CDS 40.0%
!! CGGATCGTTTTTGGATTTGT+CGG - chr2_2:53338637-53338656 Msa0257460:CDS 40.0%
!! GGATCGTTTTTGGATTTGTC+GGG - chr2_2:53338638-53338657 Msa0257460:CDS 40.0%
! AACCACCTCTTTAGGAACTT+TGG - chr2_2:53339236-53339255 Msa0257460:intron 40.0%
AAGAGAGAAAATATAGGGGG+AGG - chr2_2:53339720-53339739 Msa0257460:intron 40.0%
CATTTCCCTTACAGTGTGTT+TGG - chr2_2:53340234-53340253 Msa0257460:intron 40.0%
ACCAACCAAACACACTGTAA+GGG + chr2_2:53340242-53340261 None:intergenic 40.0%
!! GTGTTTGGTTGGTGAGAAAT+AGG - chr2_2:53340249-53340268 Msa0257460:intron 40.0%
GGAGACAGATTAAAAAGCCA+TGG - chr2_2:53340347-53340366 Msa0257460:intron 40.0%
GCGAAGAAACAAAAAGAGGT+GGG + chr2_2:53340375-53340394 None:intergenic 40.0%
AGCGAAGAAACAAAAAGAGG+TGG + chr2_2:53340376-53340395 None:intergenic 40.0%
!! ACCTCTTTTTGTTTCTTCGC+TGG - chr2_2:53340375-53340394 Msa0257460:intron 40.0%
ACCAGCGAAGAAACAAAAAG+AGG + chr2_2:53340379-53340398 None:intergenic 40.0%
! ATGAGGGTGTGATAGAAACT+AGG + chr2_2:53340466-53340485 None:intergenic 40.0%
CTATCTACAAATAGCGACCA+AGG + chr2_2:53340524-53340543 None:intergenic 40.0%
CGATTAGAAATGGTACATGC+TGG - chr2_2:53340660-53340679 Msa0257460:intron 40.0%
AGTAGATTTGAGGGGTTGTT+TGG + chr2_2:53341049-53341068 None:intergenic 40.0%
! CTATTCTCTAAGGGTGTGTT+TGG + chr2_2:53341144-53341163 None:intergenic 40.0%
AATTGATTGCGATGAAACCC+TGG + chr2_2:53341221-53341240 None:intergenic 40.0%
! CTTGAAGTTGGTTCCTAAGA+AGG + chr2_2:53341267-53341286 None:intergenic 40.0%
GAGAGAAACGAACTTGAAGT+TGG + chr2_2:53341279-53341298 None:intergenic 40.0%
ATCAGAATCGTCACATCATG+AGG - chr2_2:53342725-53342744 Msa0257460:CDS 40.0%
TCACATCATGAGGAATGTGA+AGG - chr2_2:53342735-53342754 Msa0257460:CDS 40.0%
CACATCATGAGGAATGTGAA+GGG - chr2_2:53342736-53342755 Msa0257460:CDS 40.0%
! TCAACCATTTTAGGCTGCCA+TGG + chr2_2:53338567-53338586 None:intergenic 45.0%
ACAATGTTATTGGTCGCGGA+TGG + chr2_2:53338615-53338634 None:intergenic 45.0%
GACCAAAGTTCCTAAAGAGG+TGG + chr2_2:53339241-53339260 None:intergenic 45.0%
GAGGACCAAAGTTCCTAAAG+AGG + chr2_2:53339244-53339263 None:intergenic 45.0%
!! AAAGTGCTTAAAGAGTGCCC+TGG - chr2_2:53340198-53340217 Msa0257460:intron 45.0%
!! AAGTGCTTAAAGAGTGCCCT+GGG - chr2_2:53340199-53340218 Msa0257460:intron 45.0%
TCCCTTACAGTGTGTTTGGT+TGG - chr2_2:53340238-53340257 Msa0257460:intron 45.0%
CACCAACCAAACACACTGTA+AGG + chr2_2:53340243-53340262 None:intergenic 45.0%
! TTTGGTGCAGCAGAGAAACA+GGG - chr2_2:53340325-53340344 Msa0257460:intron 45.0%
!! TCGCTGGTTTGAGAAGAAAG+AGG - chr2_2:53340391-53340410 Msa0257460:intron 45.0%
GTAGAAGACAAGGGTAAGGT+GGG + chr2_2:53340444-53340463 None:intergenic 45.0%
CTAGGTAGAAGACAAGGGTA+AGG + chr2_2:53340448-53340467 None:intergenic 45.0%
TGGCAATCAGCTAAGCATGA+GGG + chr2_2:53340482-53340501 None:intergenic 45.0%
ATGGCAATCAGCTAAGCATG+AGG + chr2_2:53340483-53340502 None:intergenic 45.0%
! CTCTAAGGGTGTGTTTGGTT+TGG + chr2_2:53341139-53341158 None:intergenic 45.0%
ATTTCCATACGCAGCTTCCA+GGG - chr2_2:53341201-53341220 Msa0257460:intron 45.0%
GGAAACTACAGAATCAGCGT+TGG + chr2_2:53341246-53341265 None:intergenic 45.0%
!! GTGAAAGTGTTTGAGCAGGA+TGG - chr2_2:53342609-53342628 Msa0257460:intron 45.0%
CTGAAAGTTATGGGTCGTAC+TGG - chr2_2:53342658-53342677 Msa0257460:intron 45.0%
GAATGTGAAGGGACCAGTTA+GGG - chr2_2:53342747-53342766 Msa0257460:CDS 45.0%
AGAATGTATCCCTCCCTAAC+TGG + chr2_2:53342763-53342782 None:intergenic 45.0%
TTCTCTCTCAGACTCAAGGA+GGG + chr2_2:53342788-53342807 None:intergenic 45.0%
TTGCTTCTCTCTCAGACTCA+AGG + chr2_2:53342792-53342811 None:intergenic 45.0%
!! ATGAATAATATAAAAAATAT+AGG + chr2_2:53339047-53339066 None:intergenic 5.0%
!!! TTTAAATAATTTAATTTGTT+TGG - chr2_2:53339420-53339439 Msa0257460:intron 5.0%
AGTGCCATGGCAGCCTAAAA+TGG - chr2_2:53338560-53338579 Msa0257460:CDS 50.0%
ATGTTATTGGTCGCGGATGG+AGG + chr2_2:53338612-53338631 None:intergenic 50.0%
!! AGGATGCTTAAAGAGTGCCC+CGG + chr2_2:53340091-53340110 None:intergenic 50.0%
!! AGTGCTTAAAGAGTGCCCTG+GGG - chr2_2:53340200-53340219 Msa0257460:intron 50.0%
AATGTTAACGAGTGCCCCCA+GGG + chr2_2:53340218-53340237 None:intergenic 50.0%
AAATGTTAACGAGTGCCCCC+AGG + chr2_2:53340219-53340238 None:intergenic 50.0%
!! GTTTGGTGCAGCAGAGAAAC+AGG - chr2_2:53340324-53340343 Msa0257460:intron 50.0%
TTGGTGCAGCAGAGAAACAG+GGG - chr2_2:53340326-53340345 Msa0257460:intron 50.0%
ACAAAAAGAGGTGGGACCCA+TGG + chr2_2:53340367-53340386 None:intergenic 50.0%
GGTAGAAGACAAGGGTAAGG+TGG + chr2_2:53340445-53340464 None:intergenic 50.0%
CATTTCCATACGCAGCTTCC+AGG - chr2_2:53341200-53341219 Msa0257460:intron 50.0%
ATCCAGAGGACAAGTCACTC+AGG - chr2_2:53342681-53342700 Msa0257460:intron 50.0%
! AACCTGAGTGACTTGTCCTC+TGG + chr2_2:53342686-53342705 None:intergenic 50.0%
GGAATGTGAAGGGACCAGTT+AGG - chr2_2:53342746-53342765 Msa0257460:CDS 50.0%
CTTCTCTCTCAGACTCAAGG+AGG + chr2_2:53342789-53342808 None:intergenic 50.0%
! GTCTTGTTAACGAGTGCCCC+CGG - chr2_2:53340069-53340088 Msa0257460:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG - chr2_2:53340070-53340089 Msa0257460:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG + chr2_2:53340088-53340107 None:intergenic 55.0%
!! GATGCTTAAAGAGTGCCCCG+GGG + chr2_2:53340089-53340108 None:intergenic 55.0%
!! GGATGCTTAAAGAGTGCCCC+GGG + chr2_2:53340090-53340109 None:intergenic 55.0%
!! GTGCTTAAAGAGTGCCCTGG+GGG - chr2_2:53340201-53340220 Msa0257460:intron 55.0%
GAAACCCTGGAAGCTGCGTA+TGG + chr2_2:53341208-53341227 None:intergenic 55.0%
ATGGGTCGTACTGGATCCAG+AGG - chr2_2:53342667-53342686 Msa0257460:intron 55.0%
TGTGAAGGGACCAGTTAGGG+AGG - chr2_2:53342750-53342769 Msa0257460:CDS 55.0%
GTGAAGGGACCAGTTAGGGA+GGG - chr2_2:53342751-53342770 Msa0257460:CDS 55.0%
GGTCGCGGATGGAGGCAATA+TGG + chr2_2:53338604-53338623 None:intergenic 60.0%
CTTGTTAACGAGTGCCCCCG+GGG - chr2_2:53340071-53340090 Msa0257460:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 53338555 53342825 53338555 ID=Msa0257460;Name=Msa0257460
chr2_2 mRNA 53338555 53342825 53338555 ID=Msa0257460-mRNA-1;Parent=Msa0257460;Name=Msa0257460-mRNA-1;_AED=0.62;_eAED=0.62;_QI=0|0|0|0.33|1|1|3|0|124
chr2_2 exon 53342721 53342825 53342721 ID=Msa0257460-mRNA-1:exon:16032;Parent=Msa0257460-mRNA-1
chr2_2 exon 53340095 53340165 53340095 ID=Msa0257460-mRNA-1:exon:16031;Parent=Msa0257460-mRNA-1
chr2_2 exon 53338555 53338753 53338555 ID=Msa0257460-mRNA-1:exon:16030;Parent=Msa0257460-mRNA-1
chr2_2 CDS 53342721 53342825 53342721 ID=Msa0257460-mRNA-1:cds;Parent=Msa0257460-mRNA-1
chr2_2 CDS 53340095 53340165 53340095 ID=Msa0257460-mRNA-1:cds;Parent=Msa0257460-mRNA-1
chr2_2 CDS 53338555 53338753 53338555 ID=Msa0257460-mRNA-1:cds;Parent=Msa0257460-mRNA-1
Gene Sequence

>Msa0257460

ATGGCAGTGCCATGGCAGCCTAAAATGGTTGATTTTTGGCTTTCTGCCATATTGCCTCCATCCGCGACCAATAACATTGTTTCGGATCGTTTTTGGATTTGTCGGCTTCCAGGGTTTCATCGCAATCAATTCTCCAACGCTGATTCTGTAGTTTCCTTCTTAGGAACCAACTTCAAGATGGAATCACAGATTAAGCATGCTGTTGTTCTGAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTCACTCAGGTTAGAGTGAAGTTTTTGGACGATCAGAATCGTCACATCATGAGGAATGTGAAGGGACCAGTTAGGGAGGGATACATTCTCACCCTCCTTGAGTCTGAGAGAGAAGCAAGAAGACTCCGATAG

Protein sequence

>Msa0257460

MAVPWQPKMVDFWLSAILPPSATNNIVSDRFWICRLPGFHRNQFSNADSVVSFLGTNFKMESQIKHAVVLKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGYILTLLESEREARRLR*