AlfalfaGEDB | Msa0516720

M. sativa cultivar zhongmu-4 / Msa0516720

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0516720	0.805098	1.572361e-49	-8.615850e-47
Msa0007770	Msa0516720	0.804258	2.354660e-49	-8.615850e-47
Msa0017510	Msa0516720	0.807191	5.702846e-50	-8.615850e-47
Msa0040450	Msa0516720	0.812105	5.012665e-51	-8.615850e-47
Msa0045790	Msa0516720	0.801471	8.864126e-49	-8.615850e-47
Msa0046160	Msa0516720	0.803985	2.684076e-49	-8.615850e-47
Msa0116770	Msa0516720	0.800657	1.300218e-48	-8.615850e-47
Msa0136070	Msa0516720	0.805757	1.144172e-49	-8.615850e-47
Msa0157290	Msa0516720	0.806950	6.411457e-50	-8.615850e-47
Msa0165210	Msa0516720	0.803599	3.227373e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 22 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAGGGGTGAGACAAGAATA+AGG	0.429745	3_4:+68225235	None:intergenic
CAATAACATCTATTCACCCA+TGG	0.638860	3_4:-68225717	None:intergenic
CTTATTCCAGGTTTCATCCA+TGG	0.439084	3_4:+68225700	Msa0516720:intron
GACAAGAATAAGGATGAATT+TGG	0.329771	3_4:+68225245	Msa0516720:five_prime_UTR
GAGAACAAAGCCTCACAAGT+GGG	0.677160	3_4:+68225756	Msa0516720:CDS
GCTTACAAGAGGGTCAATTT+GGG	0.435870	3_4:+68225812	Msa0516720:CDS
GGAGAACAAAGCCTCACAAG+TGG	0.638950	3_4:+68225755	Msa0516720:CDS
GGGTCAATTTGGGACTAAAT+AGG	0.371012	3_4:+68225822	Msa0516720:exon
GTTGTAGTAAATTGAGGAGA+AGG	0.436524	3_4:+68225510	Msa0516720:intron
GTTTAAAATTACACATTTGT+TGG	0.414296	3_4:+68225535	Msa0516720:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACAAGAATAAGGATGAATT+TGG	+	chr3_4:68225245-68225264	Msa0516720:five_prime_UTR	30.0%
GAGACAAAATTATATATGGG+TGG	+	chr3_4:68225267-68225286	Msa0516720:intron	30.0%
GAAATGAAATCAAATGTGGA+AGG	-	chr3_4:68225464-68225483	None:intergenic	30.0%
TTGTAGTAAATTGAGGAGAA+GGG	+	chr3_4:68225511-68225530	Msa0516720:intron	30.0%
TTATTGCTCTTTACATGAAG+TGG	+	chr3_4:68225734-68225753	Msa0516720:CDS	30.0%
TTATGTCTAAGAAAGGTCTA+GGG	-	chr3_4:68225904-68225923	None:intergenic	30.0%
TTTATGTCTAAGAAAGGTCT+AGG	-	chr3_4:68225905-68225924	None:intergenic	30.0%
TGTTGAAGCAAAGAAATCAG+TGG	-	chr3_4:68225294-68225313	None:intergenic	35.0%
GACTGATATCAACTGAGAAA+GGG	-	chr3_4:68225385-68225404	None:intergenic	35.0%
AGACTGATATCAACTGAGAA+AGG	-	chr3_4:68225386-68225405	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	68225236	68225948	68225236	ID=Msa0516720;Name=Msa0516720
chr3_4	mRNA	68225236	68225948	68225236	ID=Msa0516720-mRNA-1;Parent=Msa0516720;Name=Msa0516720-mRNA-1;_AED=0.19;_eAED=0.19;_QI=93\|1\|1\|1\|0\|0\|3\|109\|58
chr3_4	exon	68225236	68225285	68225236	ID=Msa0516720-mRNA-1:exon:17946;Parent=Msa0516720-mRNA-1
chr3_4	exon	68225517	68225606	68225517	ID=Msa0516720-mRNA-1:exon:17947;Parent=Msa0516720-mRNA-1
chr3_4	exon	68225710	68225948	68225710	ID=Msa0516720-mRNA-1:exon:17948;Parent=Msa0516720-mRNA-1
chr3_4	five_prime_UTR	68225236	68225285	68225236	ID=Msa0516720-mRNA-1:five_prime_utr;Parent=Msa0516720-mRNA-1
chr3_4	five_prime_UTR	68225517	68225559	68225517	ID=Msa0516720-mRNA-1:five_prime_utr;Parent=Msa0516720-mRNA-1
chr3_4	CDS	68225560	68225606	68225560	ID=Msa0516720-mRNA-1:cds;Parent=Msa0516720-mRNA-1
chr3_4	CDS	68225710	68225839	68225710	ID=Msa0516720-mRNA-1:cds;Parent=Msa0516720-mRNA-1
chr3_4	three_prime_UTR	68225840	68225948	68225840	ID=Msa0516720-mRNA-1:three_prime_utr;Parent=Msa0516720-mRNA-1

Gene Sequence	>Msa0516720 ATGTTGTTTAGTTTCATCTCCAGTGCAAAGGTTGAAAAATATGCAATGTTTCATCCATGGGTGAATAGATGTTATTGCTCTTTACATGAAGTGGAGAACAAAGCCTCACAAGTGGGACTTGAAGAATTTCAAGAATTGTTTTTATTGGTGCTTACAAGAGGGTCAATTTGGGACTAA
Protein sequence	>Msa0516720 MLFSFISSAKVEKYAMFHPWVNRCYCSLHEVENKASQVGLEEFQELFLLVLTRGSIWD*