AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178040 MtrunA17_Chr1g0201021 98.249 571 10 0 1 571 1 571 0.0 1178
Msa0178040 MtrunA17_Chr3g0130101 52.261 199 90 1 13 211 1 194 7.73e-69 226
Msa0178040 MtrunA17_Chr8g0364791 56.000 175 77 0 20 194 7 181 5.42e-67 224
Msa0178040 MtrunA17_Chr8g0384201 54.857 175 79 0 20 194 7 181 2.46e-65 221
Msa0178040 MtrunA17_Chr6g0481091 59.006 161 66 0 21 181 8 168 8.88e-61 201
Msa0178040 MtrunA17_Chr5g0433781 61.728 162 61 1 21 181 8 169 9.99e-61 212
Msa0178040 MtrunA17_Chr3g0092671 46.154 247 119 5 21 254 7 252 1.53e-59 207
Msa0178040 MtrunA17_Chr3g0109821 60.494 162 62 2 21 180 8 169 4.08e-59 208
Msa0178040 MtrunA17_Chr2g0309891 58.065 155 64 1 17 170 4 158 4.92e-58 197
Msa0178040 MtrunA17_Chr1g0197361 55.882 170 73 2 21 189 10 178 5.45e-58 204
Msa0178040 MtrunA17_Chr1g0197351 56.111 180 72 2 18 191 41 219 2.10e-57 199
Msa0178040 MtrunA17_Chr5g0400461 56.410 156 58 2 21 169 8 160 6.44e-53 183
Msa0178040 MtrunA17_Chr4g0054791 55.696 158 67 1 15 169 2 159 1.28e-52 182
Msa0178040 MtrunA17_Chr3g0128111 51.534 163 75 1 8 170 35 193 4.30e-52 178
Msa0178040 MtrunA17_Chr3g0128151 52.601 173 79 2 1 170 1 173 1.57e-50 183
Msa0178040 MtrunA17_Chr5g0428991 49.714 175 82 1 1 169 1 175 5.47e-48 177
Msa0178040 MtrunA17_Chr4g0018391 49.333 150 73 2 21 169 9 156 2.96e-47 168
Msa0178040 MtrunA17_Chr2g0309331 47.682 151 75 3 21 169 12 160 7.74e-46 164
Msa0178040 MtrunA17_Chr5g0405211 52.672 131 61 1 21 150 10 140 9.98e-46 164
Msa0178040 MtrunA17_Chr6g0461661 42.718 206 105 7 22 221 21 219 1.34e-45 165
Msa0178040 MtrunA17_Chr4g0060931 47.853 163 81 2 15 175 13 173 2.17e-45 164
Msa0178040 MtrunA17_Chr4g0056541 46.067 178 85 6 21 194 9 179 3.02e-45 164
Msa0178040 MtrunA17_Chr2g0316971 51.266 158 69 4 21 173 25 179 3.03e-45 164
Msa0178040 MtrunA17_Chr8g0372121 47.333 150 76 2 21 169 8 155 4.70e-45 161
Msa0178040 MtrunA17_Chr4g0017921 49.333 150 72 2 21 169 10 156 1.02e-44 162
Msa0178040 MtrunA17_Chr3g0091921 49.045 157 76 2 21 175 18 172 1.04e-44 160
Msa0178040 MtrunA17_Chr5g0417791 47.134 157 77 2 17 169 1 155 1.43e-44 159
Msa0178040 MtrunA17_Chr6g0453131 50.000 162 67 5 20 170 16 174 1.60e-44 162
Msa0178040 MtrunA17_Chr5g0398971 47.682 151 76 3 21 169 9 158 1.73e-44 161
Msa0178040 MtrunA17_Chr2g0318081 45.283 159 85 1 17 175 14 170 2.03e-44 161
Msa0178040 MtrunA17_Chr8g0361731 47.024 168 72 5 15 170 12 174 2.75e-44 162
Msa0178040 MtrunA17_Chr1g0200561 48.750 160 75 3 21 177 21 176 3.37e-44 160
Msa0178040 MtrunA17_Chr4g0042561 46.497 157 78 2 21 173 11 165 5.16e-44 157
Msa0178040 MtrunA17_Chr4g0076731 50.327 153 71 3 20 171 55 203 5.60e-44 162
Msa0178040 MtrunA17_Chr7g0252971 46.012 163 73 4 21 170 10 170 9.34e-44 159
Msa0178040 MtrunA17_Chr6g0453451 49.367 158 74 4 21 175 22 176 1.33e-43 158
Msa0178040 MtrunA17_Chr3g0139331 50.955 157 71 3 21 175 13 165 1.46e-43 158
Msa0178040 MtrunA17_Chr5g0417001 45.963 161 75 3 20 170 15 173 1.48e-43 159
Msa0178040 MtrunA17_Chr3g0124761 49.351 154 72 3 21 171 9 159 1.80e-43 156
Msa0178040 MtrunA17_Chr2g0318101 48.980 147 71 2 6 150 2 146 4.71e-43 157
Msa0178040 MtrunA17_Chr6g0484441 48.667 150 73 2 21 170 7 152 5.33e-43 156
Msa0178040 MtrunA17_Chr7g0253011 47.771 157 72 4 21 170 19 172 1.14e-42 157
Msa0178040 MtrunA17_Chr8g0384721 41.414 198 109 4 21 214 9 203 1.72e-42 154
Msa0178040 MtrunA17_Chr4g0038751 48.387 155 70 4 19 170 15 162 1.76e-42 154
Msa0178040 MtrunA17_Chr4g0047841 53.030 132 58 2 21 150 17 146 1.79e-42 155
Msa0178040 MtrunA17_Chr8g0346001 49.231 130 65 1 21 149 17 146 2.36e-42 157
Msa0178040 MtrunA17_Chr8g0359921 46.795 156 79 3 17 170 12 165 3.76e-42 154
Msa0178040 MtrunA17_Chr3g0130731 48.701 154 73 3 21 171 9 159 4.15e-42 153
Msa0178040 MtrunA17_Chr2g0326361 49.635 137 65 2 21 155 16 150 1.55e-41 152
Msa0178040 MtrunA17_Chr1g0147421 50.314 159 70 5 21 175 29 182 2.75e-41 152
Msa0178040 MtrunA17_Chr7g0214071 48.171 164 70 5 21 179 17 170 7.85e-41 148
Msa0178040 MtrunA17_Chr7g0263931 43.312 157 81 3 21 171 13 167 1.22e-39 147
Msa0178040 MtrunA17_Chr3g0144271 53.425 146 58 6 21 159 25 167 2.15e-39 149
Msa0178040 MtrunA17_Chr7g0217721 51.538 130 61 1 22 151 22 149 3.52e-39 146
Msa0178040 MtrunA17_Chr7g0217711 51.587 126 59 1 22 147 22 145 4.46e-39 141
Msa0178040 MtrunA17_Chr2g0311651 42.169 166 80 4 20 170 23 187 5.16e-38 142
Msa0178040 MtrunA17_Chr5g0442771 44.444 162 76 4 20 169 19 178 2.36e-37 140
Msa0178040 MtrunA17_Chr2g0311661 48.855 131 62 2 20 146 22 151 2.99e-37 139
Msa0178040 MtrunA17_Chr1g0183741 45.033 151 75 3 21 169 12 156 3.15e-36 136
Msa0178040 MtrunA17_Chr2g0312321 51.181 127 58 3 21 147 13 135 4.17e-36 137
Msa0178040 MtrunA17_Chr2g0321741 53.333 120 52 2 39 155 12 130 1.04e-35 137
Msa0178040 MtrunA17_Chr8g0345671 53.968 126 54 3 22 144 14 138 3.96e-35 136
Msa0178040 MtrunA17_Chr7g0261411 44.966 149 74 3 21 167 12 154 5.62e-35 133
Msa0178040 MtrunA17_Chr8g0345711 47.794 136 66 4 13 144 5 139 1.60e-33 125
Msa0178040 MtrunA17_Chr8g0345691 47.368 152 70 6 13 155 5 155 3.27e-33 131
Msa0178040 MtrunA17_Chr8g0385991 47.656 128 61 2 21 146 16 139 2.20e-31 121
Msa0178040 MtrunA17_Chr3g0131911 40.719 167 85 3 21 177 16 178 3.78e-31 121
Msa0178040 MtrunA17_Chr3g0113001 37.017 181 80 5 71 223 15 189 1.08e-30 121
Msa0178040 MtrunA17_Chr7g0266701 42.236 161 81 6 21 170 6 165 3.40e-30 119
Msa0178040 MtrunA17_Chr8g0345731 45.736 129 63 5 22 144 27 154 3.13e-28 110
Msa0178040 MtrunA17_Chr2g0321631 39.752 161 89 5 19 171 4 164 1.62e-27 111
Msa0178040 MtrunA17_Chr8g0345741 44.915 118 61 3 30 144 2 118 9.09e-27 106
Msa0178040 MtrunA17_Chr4g0026141 44.961 129 65 4 21 144 7 134 2.60e-25 105
Msa0178040 MtrunA17_Chr3g0113031 49.038 104 46 3 84 181 3 105 3.88e-25 105
Msa0178040 MtrunA17_Chr8g0345721 36.774 155 65 4 22 144 38 191 2.44e-24 101
Msa0178040 MtrunA17_Chr8g0345701 41.892 148 65 6 15 144 2 146 4.46e-24 99.4
Msa0178040 MtrunA17_Chr4g0050701 39.062 128 66 4 21 146 13 130 1.51e-22 95.5
Msa0178040 MtrunA17_Chr7g0243371 39.394 99 58 1 74 170 17 115 8.78e-19 82.4
Msa0178040 MtrunA17_Chr7g0251651 31.361 169 106 5 3 168 2 163 2.61e-16 77.8
Msa0178040 MtrunA17_Chr7g0251661 31.746 126 82 3 22 146 13 135 9.13e-16 75.1
Msa0178040 MtrunA17_Chr8g0384351 33.333 126 66 5 21 146 12 119 3.18e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178040 AT1G34190.1 43.121 596 266 19 4 569 1 553 7.71e-139 414
Msa0178040 AT1G34180.1 41.356 590 286 19 6 567 3 560 3.13e-125 380
Msa0178040 AT1G34180.2 40.532 602 286 20 6 567 3 572 1.35e-121 370
Msa0178040 AT1G34180.3 47.354 378 161 10 6 370 3 355 4.77e-99 308
Msa0178040 AT1G34180.4 45.897 390 161 11 6 370 3 367 1.29e-95 300
Msa0178040 AT1G32870.1 37.655 563 285 16 21 567 12 524 6.36e-86 276
Msa0178040 AT1G32870.3 37.655 563 285 16 21 567 48 560 2.73e-85 276
Msa0178040 AT5G09330.5 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0178040 AT5G09330.2 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0178040 AT5G09330.4 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0178040 AT5G09330.3 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0178040 AT5G09330.1 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0178040 AT1G32870.2 59.829 234 86 5 21 249 12 242 2.15e-70 236
Msa0178040 AT1G32870.2 27.444 266 161 7 330 567 257 518 5.13e-13 72.0
Msa0178040 AT5G04410.1 58.333 180 75 0 16 195 6 185 2.70e-69 234
Msa0178040 AT5G64060.1 54.971 171 77 0 21 191 8 178 3.50e-66 219
Msa0178040 AT3G10500.1 59.763 169 68 0 16 184 6 174 6.97e-65 221
Msa0178040 AT3G10480.2 45.560 259 131 5 1 250 6 263 1.21e-62 213
Msa0178040 AT3G10490.1 55.026 189 82 3 7 193 14 201 1.26e-61 204
Msa0178040 AT3G10480.1 45.385 260 131 6 1 250 6 264 2.12e-61 209
Msa0178040 AT1G65910.1 60.366 164 65 0 17 180 4 167 2.44e-61 214
Msa0178040 AT3G17730.1 61.589 151 58 0 21 171 8 158 5.59e-61 202
Msa0178040 AT3G10490.2 48.291 234 112 4 7 238 14 240 5.91e-61 209
Msa0178040 AT5G17260.1 60.000 150 59 1 21 169 8 157 7.13e-58 201
Msa0178040 AT3G03200.1 60.667 150 58 1 21 169 8 157 2.91e-57 199
Msa0178040 AT3G10480.3 43.580 257 104 5 1 217 6 261 9.74e-56 196
Msa0178040 AT1G54330.1 56.604 159 66 1 17 175 4 159 1.50e-52 182
Msa0178040 AT1G33060.1 56.494 154 66 1 17 169 21 174 2.55e-51 187
Msa0178040 AT1G33060.2 56.494 154 66 1 17 169 21 174 3.03e-51 187
Msa0178040 AT5G46590.1 53.289 152 69 2 21 170 8 159 4.69e-51 177
Msa0178040 AT4G35580.1 54.118 170 66 2 1 169 1 159 1.11e-50 182
Msa0178040 AT4G35580.2 54.118 170 66 2 1 169 1 159 1.13e-50 183
Msa0178040 AT4G35580.3 54.118 170 66 2 1 169 1 159 1.13e-50 183
Msa0178040 AT1G32510.1 54.430 158 64 2 21 170 8 165 2.48e-50 175
Msa0178040 AT4G17980.1 55.556 153 64 2 21 169 8 160 4.61e-50 174
Msa0178040 AT5G46590.2 55.319 141 61 2 21 159 8 148 5.78e-50 174
Msa0178040 AT4G17980.2 55.195 154 65 2 21 170 8 161 1.10e-49 174
Msa0178040 AT3G49530.2 45.274 201 98 3 17 215 10 200 1.85e-48 174
Msa0178040 AT5G24590.2 53.548 155 70 2 17 169 10 164 2.28e-48 174
Msa0178040 AT2G27300.1 53.289 152 67 2 7 155 2 152 4.80e-48 171
Msa0178040 AT3G49530.1 45.274 201 98 3 17 215 10 200 5.66e-48 174
Msa0178040 AT1G62700.1 44.134 179 89 5 21 194 9 181 1.07e-47 171
Msa0178040 AT1G62700.2 44.134 179 89 5 21 194 9 181 1.07e-47 171
Msa0178040 AT3G44290.2 52.448 143 64 2 16 155 11 152 1.36e-47 166
Msa0178040 AT5G22290.1 49.045 157 75 2 3 155 5 160 4.37e-47 168
Msa0178040 AT2G18060.3 44.211 190 97 4 15 202 5 187 5.16e-47 169
Msa0178040 AT2G18060.1 44.211 190 97 4 15 202 5 187 5.16e-47 169
Msa0178040 AT3G44290.1 52.448 143 64 2 16 155 11 152 6.05e-47 167
Msa0178040 AT4G36160.2 49.669 151 70 2 1 150 1 146 7.67e-47 169
Msa0178040 AT1G33280.1 50.667 150 70 2 21 169 10 156 2.82e-46 165
Msa0178040 AT1G12260.2 48.684 152 71 3 21 169 9 156 2.95e-46 166
Msa0178040 AT1G12260.1 44.068 177 90 4 21 194 9 179 3.26e-46 167
Msa0178040 AT4G36160.1 53.435 131 60 1 21 150 12 142 3.53e-46 167
Msa0178040 AT4G36160.3 53.435 131 60 1 21 150 12 142 3.53e-46 167
Msa0178040 AT1G69490.1 45.312 192 96 5 21 208 11 197 5.68e-46 163
Msa0178040 AT5G66300.1 46.951 164 85 2 21 183 14 176 7.29e-46 163
Msa0178040 AT4G27410.2 47.403 154 79 1 17 170 12 163 8.07e-46 163
Msa0178040 AT5G07680.1 47.853 163 81 2 15 175 13 173 1.01e-45 164
Msa0178040 AT4G10350.1 48.667 150 76 1 21 169 11 160 1.41e-45 164
Msa0178040 AT5G07680.2 47.826 161 80 2 17 175 1 159 1.66e-45 163
Msa0178040 AT5G61430.1 47.853 163 81 2 15 175 12 172 1.97e-45 164
Msa0178040 AT5G39820.1 51.049 143 64 3 6 146 9 147 8.16e-45 162
Msa0178040 AT1G01720.1 44.865 185 89 5 13 188 1 181 8.38e-45 160
Msa0178040 AT5G39610.1 50.000 160 70 3 21 175 22 176 1.18e-44 160
Msa0178040 AT5G62380.2 53.435 131 60 1 21 150 9 139 1.28e-44 162
Msa0178040 AT5G62380.1 53.435 131 60 1 21 150 9 139 1.28e-44 162
Msa0178040 AT1G71930.2 44.444 180 85 5 16 191 5 173 1.40e-44 161
Msa0178040 AT1G71930.1 44.444 180 85 5 16 191 5 173 1.40e-44 161
Msa0178040 AT3G15500.1 47.059 153 79 1 17 169 12 162 3.25e-44 160
Msa0178040 AT1G79580.3 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0178040 AT1G79580.5 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0178040 AT1G79580.4 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0178040 AT1G79580.2 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0178040 AT1G79580.1 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0178040 AT3G29035.1 46.552 174 85 3 14 183 19 188 1.04e-43 158
Msa0178040 AT3G04060.1 48.780 164 73 4 15 172 16 174 1.17e-43 159
Msa0178040 AT5G18270.1 40.000 215 107 6 15 225 17 213 1.68e-43 158
Msa0178040 AT5G18270.2 40.000 215 107 6 15 225 17 213 1.88e-43 158
Msa0178040 AT2G17040.1 50.649 154 66 4 20 170 7 153 1.94e-43 156
Msa0178040 AT1G52890.1 45.283 159 85 1 17 175 12 168 3.56e-43 157
Msa0178040 AT4G27410.3 43.787 169 80 1 17 170 12 180 5.73e-43 156
Msa0178040 AT2G02450.1 48.366 153 74 3 20 171 52 200 8.84e-43 157
Msa0178040 AT2G24430.2 50.327 153 69 4 21 170 18 166 9.41e-43 155
Msa0178040 AT2G24430.1 50.327 153 69 4 21 170 18 166 9.41e-43 155
Msa0178040 AT1G77450.1 48.052 154 74 3 21 171 12 162 1.10e-42 154
Msa0178040 AT2G02450.2 48.366 153 74 3 20 171 52 200 1.17e-42 158
Msa0178040 AT3G18400.1 46.452 155 80 2 21 175 7 158 1.46e-42 155
Msa0178040 AT2G43000.1 47.059 153 78 2 18 169 17 167 1.50e-42 154
Msa0178040 AT1G61110.1 52.857 140 63 2 21 159 18 155 1.52e-42 155
Msa0178040 AT2G46770.1 46.667 150 76 2 1 149 1 147 1.55e-42 156
Msa0178040 AT3G61910.1 49.275 138 68 2 21 156 13 150 2.16e-42 155
Msa0178040 AT1G76420.1 50.968 155 67 4 21 171 24 173 2.76e-42 155
Msa0178040 AT3G15170.1 51.282 156 68 4 21 171 22 174 3.54e-42 154
Msa0178040 AT1G32770.1 50.388 129 63 1 21 148 18 146 3.63e-42 155
Msa0178040 AT1G26870.1 46.626 163 72 4 20 170 17 176 4.10e-42 157
Msa0178040 AT5G63790.1 46.452 155 75 3 22 171 53 204 5.70e-42 154
Msa0178040 AT5G63790.2 46.452 155 75 3 22 171 63 214 8.21e-42 153
Msa0178040 AT5G53950.1 50.641 156 67 5 21 170 19 170 1.06e-41 154
Msa0178040 AT5G08790.1 47.097 155 74 3 22 171 10 161 1.38e-41 152
Msa0178040 AT5G13180.1 47.853 163 77 3 16 176 11 167 3.74e-41 149
Msa0178040 AT3G04070.2 42.593 162 79 4 21 170 12 171 4.06e-41 152
Msa0178040 AT3G15510.1 38.571 210 104 4 23 219 21 218 7.11e-41 152
Msa0178040 AT3G04070.1 48.092 131 61 2 21 146 12 140 2.24e-40 150
Msa0178040 AT2G33480.1 48.701 154 74 1 16 169 12 160 1.50e-39 145
Msa0178040 AT2G33480.2 48.701 154 72 2 16 169 12 158 2.96e-39 145
Msa0178040 AT3G12977.1 44.156 154 83 2 21 173 20 171 6.68e-38 141
Msa0178040 AT1G56010.2 41.765 170 93 3 21 186 21 188 3.77e-37 140
Msa0178040 AT5G04395.1 42.683 164 79 3 2 150 10 173 5.13e-35 130
Msa0178040 AT1G52880.1 46.250 160 72 3 23 170 21 178 7.24e-35 134
Msa0178040 AT3G12910.1 48.485 132 60 3 20 146 22 150 6.87e-34 131
Msa0178040 AT4G28530.1 42.604 169 69 6 21 169 12 172 1.02e-31 126
Msa0178040 AT5G61430.2 50.467 107 51 1 71 175 3 109 1.19e-30 121
Msa0178040 AT3G44350.2 39.355 155 89 5 22 171 8 162 1.66e-28 114
Msa0178040 AT4G01550.1 38.857 175 94 5 16 183 1 169 1.78e-28 119
Msa0178040 AT5G22380.1 40.764 157 86 6 22 171 8 164 6.17e-28 112
Msa0178040 AT3G44350.1 40.523 153 86 5 22 169 8 160 1.01e-27 109
Msa0178040 AT3G10490.4 45.205 146 72 3 94 238 2 140 1.24e-27 114
Msa0178040 AT3G10490.3 45.205 146 72 3 94 238 2 140 1.24e-27 114
Msa0178040 AT4G10350.2 45.918 98 53 0 72 169 16 113 8.69e-27 110
Msa0178040 AT1G56010.1 44.444 117 62 1 73 186 5 121 1.09e-26 109
Msa0178040 AT3G04420.2 40.800 125 72 1 22 144 6 130 2.98e-26 109
Msa0178040 AT3G12977.2 46.154 104 55 1 71 173 15 118 4.17e-26 107
Msa0178040 AT3G04420.1 40.800 125 72 1 22 144 6 130 1.08e-25 108
Msa0178040 AT4G01520.1 39.706 136 77 3 16 146 1 136 1.18e-24 105
Msa0178040 AT4G01540.3 39.706 136 77 3 16 146 1 136 2.00e-24 106
Msa0178040 AT4G01540.2 39.706 136 77 3 16 146 1 136 2.11e-24 106
Msa0178040 AT4G01540.1 39.706 136 77 3 16 146 1 136 2.75e-24 106
Msa0178040 AT4G01540.4 39.706 136 77 3 16 146 1 136 2.91e-24 105
Msa0178040 AT5G64530.2 39.552 134 65 5 17 148 1 120 6.76e-23 95.9
Msa0178040 AT5G64530.1 40.152 132 63 5 17 146 1 118 4.05e-22 94.7
Msa0178040 AT1G02230.1 40.625 128 68 3 22 144 6 130 1.07e-21 97.4
Msa0178040 AT1G02250.1 38.346 133 74 3 17 144 1 130 2.57e-21 96.3
Msa0178040 AT2G33480.3 46.000 100 52 1 72 169 4 103 3.79e-21 92.4
Msa0178040 AT1G02220.1 37.692 130 76 2 17 144 1 127 7.15e-20 92.4
Msa0178040 AT4G28530.2 45.370 108 41 3 21 112 12 117 3.03e-19 89.4
Msa0178040 AT1G01010.1 37.589 141 76 3 17 147 1 139 9.36e-18 86.3
Msa0178040 AT5G14000.2 32.283 127 80 2 22 146 18 140 4.56e-17 79.0
Msa0178040 AT5G22290.2 56.667 60 22 1 100 155 2 61 7.14e-17 80.9
Msa0178040 AT2G18060.2 39.583 96 55 2 100 194 3 96 3.88e-16 79.3
Msa0178040 AT3G56530.1 31.544 149 97 4 21 167 54 199 5.54e-16 79.7
Msa0178040 AT5G14000.1 30.263 152 97 3 22 171 18 162 5.81e-16 77.4
Msa0178040 AT2G43000.2 42.045 88 50 1 83 169 2 89 2.45e-15 75.5
Msa0178040 AT3G55210.1 30.000 160 94 4 21 167 13 167 4.90e-15 76.3
Msa0178040 AT1G28470.1 34.659 176 85 11 17 172 74 239 1.02e-11 66.6

Find 166 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAAATTTAAGACTATT+AGG 0.168141 1_4:-65403589 Msa0178040:CDS
GCCCATTCTTCTTCTTTAAA+TGG 0.196298 1_4:+65405400 None:intergenic
ACAGTTTGATTTGCGTCTTC+TGG 0.203030 1_4:+65404347 None:intergenic
TCTAGAATTAAAGCTGAATT+TGG 0.211729 1_4:+65403396 None:intergenic
CCATACTGTTCACCGTTCTT+AGG 0.238231 1_4:+65405427 None:intergenic
GAAATTGATGAAATCATTAA+AGG 0.241716 1_4:-65405268 Msa0178040:CDS
GATCGAGATGGGTGCGGTTT+CGG 0.256333 1_4:-65406934 Msa0178040:exon
CAAAATATCGAGAGAGAAAA+TGG 0.259622 1_4:+65407274 None:intergenic
ATCAAACTGTTGATGAATTC+TGG 0.264215 1_4:-65404334 Msa0178040:CDS
CTGAAAATCCCTTGGTAAAT+CGG 0.287533 1_4:-65403780 Msa0178040:CDS
AAAACCCACAACAAAATAAT+AGG 0.305550 1_4:+65407190 None:intergenic
TATTGTAAGGTGAAAGGTTT+AGG 0.308091 1_4:+65407322 None:intergenic
GCTTTCTTGTGGGTTTCTAT+TGG 0.323704 1_4:-65403607 Msa0178040:CDS
TCAGCTTTAATTCTAGAGTA+AGG 0.332283 1_4:-65403390 Msa0178040:three_prime_UTR
GAACAATCTTTCCTGAAAAC+TGG 0.333240 1_4:-65405869 Msa0178040:CDS
TCCTCCCCGCTTTGAATGTT+CGG 0.334586 1_4:+65404632 None:intergenic
TCGTCAATTCCAACTATCTA+AGG 0.339515 1_4:-65407053 Msa0178040:five_prime_UTR
TGCTTTATGTGCTTTCTTGT+GGG 0.339931 1_4:-65403617 Msa0178040:CDS
TTGGAAATTTAAGACTATTA+GGG 0.350725 1_4:-65403588 Msa0178040:CDS
TGATGAAGAAACACGAAATA+TGG 0.352461 1_4:-65404813 Msa0178040:CDS
GAGATGTTTCTTTGTGGCCT+GGG 0.356280 1_4:-65404458 Msa0178040:CDS
TTCAACTCAAGGTAAGGTTT+AGG 0.361601 1_4:-65403424 Msa0178040:three_prime_UTR
AAATAATAGGATCGAACCTC+TGG 0.362954 1_4:+65407203 None:intergenic
TATCTATAGCAGCAAAACTT+TGG 0.381183 1_4:+65403537 None:intergenic
GCACATAAAGCAATAAGAAT+CGG 0.388701 1_4:+65403628 None:intergenic
TGATTCAAGCCTTAGATAGT+TGG 0.389714 1_4:+65407044 None:intergenic
TCCCGCGTAGTATCAAGTTT+TGG 0.394458 1_4:-65403284 Msa0178040:three_prime_UTR
GGTACGAGGATTCGAGGATT+AGG 0.400673 1_4:+65407225 None:intergenic
CACTCAACACATCTTCAAAC+TGG 0.409957 1_4:+65404504 None:intergenic
TAAGACATGCCGTGATGTTA+AGG 0.415877 1_4:-65405612 Msa0178040:intron
ATCTGAAAAGGAAGATTTGT+GGG 0.421125 1_4:-65406821 Msa0178040:CDS
TTGATTTGCGTCTTCTGGAT+TGG 0.421770 1_4:+65404352 None:intergenic
AGAGATGTTTCTTTGTGGCC+TGG 0.424888 1_4:-65404459 Msa0178040:CDS
GAAATGTGATATACAATTCT+CGG 0.433492 1_4:-65405739 Msa0178040:CDS
ATGAAGAGAGCAGGCAGAAA+GGG 0.435247 1_4:-65403670 Msa0178040:CDS
GTTGAAGTTCAACGTTATCA+AGG 0.436333 1_4:-65406793 Msa0178040:CDS
GAATCAGTCAATATTGTTGT+GGG 0.439215 1_4:-65407027 Msa0178040:five_prime_UTR
AAAGGTTTAGGATAGTGTTA+TGG 0.442553 1_4:+65407334 None:intergenic
TTGCTTTATGTGCTTTCTTG+TGG 0.443767 1_4:-65403618 Msa0178040:CDS
CCTAAGAACGGTGAACAGTA+TGG 0.447178 1_4:-65405427 Msa0178040:CDS
CTTCTGGATTGGACAACAAC+TGG 0.447857 1_4:+65404363 None:intergenic
ACTTTGGATTTACATATTCA+AGG 0.452308 1_4:+65403553 None:intergenic
CAATAAGAATCGGGAAGAAA+AGG 0.454768 1_4:+65403638 None:intergenic
CACCATTTAAAGAAGAAGAA+TGG 0.455058 1_4:-65405402 Msa0178040:CDS
TGTATTTGAAAATGTAGATT+CGG 0.456852 1_4:+65404559 None:intergenic
GATGCAGAGATGTTTCTTTG+TGG 0.460432 1_4:-65404464 Msa0178040:CDS
TAAATATTCAACTCAAGGTA+AGG 0.461844 1_4:-65403430 Msa0178040:three_prime_UTR
CACATAAAGCAATAAGAATC+GGG 0.470798 1_4:+65403629 None:intergenic
AAATTGATGAAATCATTAAA+GGG 0.472368 1_4:-65405267 Msa0178040:CDS
TTAATGTAAATTCAGTTGAC+CGG 0.472399 1_4:-65405357 Msa0178040:CDS
TAGTGGTGAGCGAACTGATT+GGG 0.473263 1_4:-65405669 Msa0178040:CDS
TAGTGAGTTTGTGAGCTTGT+TGG 0.473308 1_4:+65407442 None:intergenic
GAGGTGATGTCGTCGATGCC+AGG 0.473742 1_4:-65406885 Msa0178040:CDS
TGAAAATCCCTTGGTAAATC+GGG 0.476781 1_4:-65403779 Msa0178040:CDS
TGGTTATGTTGACTTTCCTC+AGG 0.478965 1_4:-65405203 Msa0178040:intron
ACCATTTAAAGAAGAAGAAT+GGG 0.480249 1_4:-65405401 Msa0178040:CDS
TCTTTCTCTCTAACAAATCC+AGG 0.483310 1_4:-65404263 Msa0178040:intron
TGGTGATGTATTATCTGAAA+AGG 0.485179 1_4:-65406833 Msa0178040:CDS
TGAATCAGTCAATATTGTTG+TGG 0.485192 1_4:-65407028 Msa0178040:five_prime_UTR
CCTCTGGGTACGAGGATTCG+AGG 0.488887 1_4:+65407219 None:intergenic
CAGCTTTAATTCTAGAGTAA+GGG 0.489608 1_4:-65403389 Msa0178040:three_prime_UTR
AAAGAAACATCTCTGCATCT+TGG 0.490156 1_4:+65404468 None:intergenic
CTTTGGATTTACATATTCAA+GGG 0.491520 1_4:+65403554 None:intergenic
GGACTATTATGCACTTTACA+AGG 0.492066 1_4:-65405473 Msa0178040:CDS
TGTTGTAAATATTCAACTCA+AGG 0.494233 1_4:-65403435 Msa0178040:three_prime_UTR
AGAGTATGAAGGTTATTGTA+AGG 0.494765 1_4:+65407309 None:intergenic
GATAGTGTTATGGTCAAAGA+AGG 0.494857 1_4:+65407344 None:intergenic
CGACTAGACCTTCCACCGTT+AGG 0.494968 1_4:+65405803 None:intergenic
ATCGAATGTCTAGCTTCAGC+AGG 0.496594 1_4:-65403750 Msa0178040:CDS
GAAGGTTATTGTAAGGTGAA+AGG 0.497229 1_4:+65407316 None:intergenic
ATCACCAACTCCTCATCTGT+TGG 0.497258 1_4:+65406849 None:intergenic
AGGAAGCTAAGGTAAGTGGT+TGG 0.497513 1_4:+65407364 None:intergenic
CATGGCTACTGGAAAGCTAC+TGG 0.501589 1_4:-65405770 Msa0178040:CDS
TTGATGATTGAAGTCAAAGC+TGG 0.501672 1_4:+65404706 None:intergenic
ACCTGCAGCAATGTTGTTGT+CGG 0.505799 1_4:+65403711 None:intergenic
TATCTGAAAAGGAAGATTTG+TGG 0.507777 1_4:-65406822 Msa0178040:CDS
ACATTGTCAACAGCAGCCTC+TGG 0.508902 1_4:+65405328 None:intergenic
CAAATACCAGGTAAATCCTC+AGG 0.509072 1_4:+65406747 None:intergenic
AACATCTCTGCATCTTGGTA+AGG 0.509554 1_4:+65404473 None:intergenic
AGGAAACTGATGTGTACAAG+TGG 0.511941 1_4:-65406773 Msa0178040:CDS
TTCGGAGTGGAAGTGACCTC+AGG 0.519504 1_4:+65404650 None:intergenic
TAGATTCTCCTCAGCTCTGT+GGG 0.520308 1_4:-65403842 Msa0178040:CDS
TGCAGCAATGTTGTTGTCGG+TGG 0.520896 1_4:+65403714 None:intergenic
CATAACCATTCACATGTTGC+TGG 0.521973 1_4:+65405218 None:intergenic
GAGCAACTAGACATGGCTAC+TGG 0.524027 1_4:-65405781 Msa0178040:CDS
CAATCAGTTCGCTCACCACT+AGG 0.525126 1_4:+65405671 None:intergenic
AGATGTTTCTTTGTGGCCTG+GGG 0.525648 1_4:-65404457 Msa0178040:CDS
CTTTCCTGAAAACTGGAGAC+AGG 0.526319 1_4:-65405862 Msa0178040:CDS
ATAACCTTCAGCTGGACTGC+GGG 0.526602 1_4:+65404292 None:intergenic
GTTGGATGAAAGCGAAAACC+TGG 0.526637 1_4:+65406867 None:intergenic
ACATGTTGCTGGTCAAGGAC+AGG 0.530141 1_4:+65405229 None:intergenic
CTAGTGGTGAGCGAACTGAT+TGG 0.530398 1_4:-65405670 Msa0178040:CDS
GAACCATCATAACCTTCAGC+TGG 0.532336 1_4:+65404284 None:intergenic
TCATCCAACAGATGAGGAGT+TGG 0.537248 1_4:-65406853 Msa0178040:CDS
ACTTGGATCAGGGAATATCA+TGG 0.537254 1_4:+65404769 None:intergenic
CCACTCCGAACATTCAAAGC+GGG 0.539242 1_4:-65404637 Msa0178040:CDS
TCTTCTGATCGAGATGGGTG+CGG 0.539716 1_4:-65406940 Msa0178040:exon
GGTGTTGTGTGTGACTCTGT+CGG 0.542109 1_4:-65403922 Msa0178040:CDS
ATCAGCTGCTGAAAATCCCT+TGG 0.543692 1_4:-65403788 Msa0178040:CDS
TATGAAGAGAGCAGGCAGAA+AGG 0.544360 1_4:-65403671 Msa0178040:CDS
ATATACAATTCTCGGTCAGT+TGG 0.550050 1_4:-65405731 Msa0178040:CDS
CATGCATATATGAATAGCAC+TGG 0.554571 1_4:-65404410 Msa0178040:CDS
CTTAAGCTCATCTTCATCCA+TGG 0.555126 1_4:+65405631 None:intergenic
TGGAAGGTTCCTACAAAATG+AGG 0.557920 1_4:+65407384 None:intergenic
ATGGTCAAAGAAGGAAGCTA+AGG 0.562583 1_4:+65407353 None:intergenic
ACCGACAACAACATTGCTGC+AGG 0.564654 1_4:-65403712 Msa0178040:CDS
TTTCTTCGTTAATAGACCCC+AGG 0.566378 1_4:+65404441 None:intergenic
GCAGCTGATGCAGGAGTGGT+AGG 0.567625 1_4:+65403802 None:intergenic
AAGAAGGAAGCTAAGGTAAG+TGG 0.567857 1_4:+65407360 None:intergenic
CATTCACATGTTGCTGGTCA+AGG 0.569092 1_4:+65405224 None:intergenic
AGCTAAGGTAAGTGGTTGGA+AGG 0.569646 1_4:+65407368 None:intergenic
AGTCCAGCTGAAGGTTATGA+TGG 0.570391 1_4:-65404287 Msa0178040:CDS
GGTCATGGATCAATTCTATG+AGG 0.570510 1_4:-65404792 Msa0178040:CDS
TTCAGCAGCTGATGCAGGAG+TGG 0.571280 1_4:+65403798 None:intergenic
CTTGACCAGCAACATGTGAA+TGG 0.574283 1_4:-65405223 Msa0178040:CDS
GTGTATTTCTGAAGCACCTG+AGG 0.574286 1_4:-65404666 Msa0178040:CDS
GGAAGTATCCTAACGGTGGA+AGG 0.576876 1_4:-65405811 Msa0178040:CDS
TGTTCACCGTTCTTAGGACC+CGG 0.583775 1_4:+65405433 None:intergenic
GCAGCAATGTTGTTGTCGGT+GGG 0.584407 1_4:+65403715 None:intergenic
TGAAGAGAGCAGGCAGAAAG+GGG 0.585879 1_4:-65403669 Msa0178040:CDS
TCGCTTTCATCCAACAGATG+AGG 0.586681 1_4:-65406859 Msa0178040:CDS
TCTCTTCAGAATTAAATGAA+AGG 0.586845 1_4:-65403500 Msa0178040:three_prime_UTR
TTCAAAGCCCGATTTACCAA+GGG 0.588762 1_4:+65403772 None:intergenic
TAATGTAAATTCAGTTGACC+GGG 0.596335 1_4:-65405356 Msa0178040:CDS
ATTCAAAGCCCGATTTACCA+AGG 0.600157 1_4:+65403771 None:intergenic
CAGCAGCCTCTGGAACCTCC+CGG 0.601016 1_4:+65405338 None:intergenic
ACTGCAACTATGAAGAGAGC+AGG 0.602471 1_4:-65403679 Msa0178040:CDS
TGAAAACTGGAGACAGGCAA+TGG 0.602773 1_4:-65405856 Msa0178040:CDS
AATAATAGGATCGAACCTCT+GGG 0.606378 1_4:+65407204 None:intergenic
TTTGGATTTACATATTCAAG+GGG 0.609182 1_4:+65403555 None:intergenic
GAAATTTAAGACTATTAGGG+AGG 0.609647 1_4:-65403585 Msa0178040:CDS
CCCGCTTTGAATGTTCGGAG+TGG 0.613926 1_4:+65404637 None:intergenic
AGAAACACGAAATATGGTCA+TGG 0.614827 1_4:-65404807 Msa0178040:CDS
TGATTCAGTGCCTTTGAGTG+AGG 0.615063 1_4:+65407412 None:intergenic
TCTAGAGTAAGGGCTTGTAT+CGG 0.617355 1_4:-65403379 Msa0178040:three_prime_UTR
AGTTGACCGGGAGGTTCCAG+AGG 0.618649 1_4:-65405344 Msa0178040:CDS
TGGGATCCTGAGGATTTACC+TGG 0.620679 1_4:-65406753 Msa0178040:intron
GTAGATTCTCCTCAGCTCTG+TGG 0.621558 1_4:-65403843 Msa0178040:CDS
TGTAAATTCAGTTGACCGGG+AGG 0.624909 1_4:-65405353 Msa0178040:CDS
CATAACCTTCAGCTGGACTG+CGG 0.625001 1_4:+65404291 None:intergenic
AACACCCGCAGTCCAGCTGA+AGG 0.628590 1_4:-65404296 Msa0178040:CDS
TCAATTTCATCATCAAACAA+CGG 0.629730 1_4:+65405283 None:intergenic
TTCTGCTGATTGTTTCAGTG+AGG 0.630580 1_4:-65406904 Msa0178040:CDS
ACCAAAACTTGATACTACGC+GGG 0.631310 1_4:+65403283 None:intergenic
CTAGTCACTACCTCACTCAA+AGG 0.632055 1_4:-65407422 Msa0178040:five_prime_UTR
AGTGGACCGGGTCCTAAGAA+CGG 0.632315 1_4:-65405439 Msa0178040:CDS
AACAAAGGCCCACAGAGCTG+AGG 0.632369 1_4:+65403834 None:intergenic
TCTAGTCGAGCAACTAGACA+TGG 0.640127 1_4:-65405788 Msa0178040:CDS
TATCTTGGCAGAGCTCCTAG+TGG 0.644063 1_4:-65405686 Msa0178040:CDS
TCAACACATCTTCAAACTGG+AGG 0.645209 1_4:+65404507 None:intergenic
TGATGATTGAAGTCAAAGCT+GGG 0.651527 1_4:+65404707 None:intergenic
GGATCGAACCTCTGGGTACG+AGG 0.652799 1_4:+65407211 None:intergenic
CACTCCGAACATTCAAAGCG+GGG 0.660148 1_4:-65404636 Msa0178040:CDS
AAGGTAATACCTTAACATCA+CGG 0.661498 1_4:+65405603 None:intergenic
GGAAACTGATGTGTACAAGT+GGG 0.664415 1_4:-65406772 Msa0178040:CDS
GGTAGGTATTGAATCAACAA+AGG 0.665588 1_4:+65403819 None:intergenic
AGAGATAGGAAGTATCCTAA+CGG 0.667183 1_4:-65405818 Msa0178040:CDS
GATAGGAAGTATCCTAACGG+TGG 0.667673 1_4:-65405815 Msa0178040:CDS
TCGAATGTCTAGCTTCAGCA+GGG 0.672244 1_4:-65403749 Msa0178040:CDS
GAAGAGAGCAGGCAGAAAGG+GGG 0.676486 1_4:-65403668 Msa0178040:CDS
TCCACTCCGAACATTCAAAG+CGG 0.683841 1_4:-65404638 Msa0178040:CDS
GACCAAAACTTGATACTACG+CGG 0.691769 1_4:+65403282 None:intergenic
TCCGAACATTCAAAGCGGGG+AGG 0.705397 1_4:-65404633 Msa0178040:CDS
CCTCGAATCCTCGTACCCAG+AGG 0.706992 1_4:-65407219 Msa0178040:five_prime_UTR
TGTGTACAAGTGGGATCCTG+AGG 0.709821 1_4:-65406763 Msa0178040:CDS
GGTTATGCATGAGTACACCA+TGG 0.756724 1_4:-65405648 Msa0178040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAATTTGATTTTTTAATT+AGG - chr1_4:65403543-65403562 Msa0178040:three_prime_UTR 10.0%
!!! GAAATTTGATTTTTTAATTA+GGG - chr1_4:65403544-65403563 Msa0178040:three_prime_UTR 10.0%
!! AATTTATTTCCTTAAAATAA+TGG - chr1_4:65404635-65404654 Msa0178040:CDS 10.0%
!! ATTTATTTCCTTAAAATAAT+GGG - chr1_4:65404636-65404655 Msa0178040:CDS 10.0%
!!! TTTAAAATTATTGTTTCTGT+TGG - chr1_4:65405083-65405102 Msa0178040:intron 15.0%
!! TTTGATATAAATTCATTATC+AGG - chr1_4:65405153-65405172 Msa0178040:intron 15.0%
!! AAATTGATGAAATCATTAAA+GGG - chr1_4:65405380-65405399 Msa0178040:CDS 15.0%
!!! AGTTTTTTTTTTTGTCAAAT+GGG + chr1_4:65405644-65405663 None:intergenic 15.0%
!!! AAGTTTTTTTTTTTGTCAAA+TGG + chr1_4:65405645-65405664 None:intergenic 15.0%
!!! AAGCTTTTTGAATAAATAAG+TGG + chr1_4:65403491-65403510 None:intergenic 20.0%
!!! TTTTGTTTTGTTATCTCTTT+TGG - chr1_4:65403516-65403535 Msa0178040:three_prime_UTR 20.0%
!!! TTTGTTTTGTTATCTCTTTT+GGG - chr1_4:65403517-65403536 Msa0178040:three_prime_UTR 20.0%
!! ATAACCAACAAAAAAAAACT+AGG + chr1_4:65403993-65404012 None:intergenic 20.0%
!!! TTGGTTATGTTTATGATTTT+TGG - chr1_4:65404005-65404024 Msa0178040:intron 20.0%
!!! GTTGGTTATATTAATGTTTT+TGG - chr1_4:65404036-65404055 Msa0178040:intron 20.0%
!!! ATGTTTTTGGTTTTGTTTAA+TGG - chr1_4:65404080-65404099 Msa0178040:intron 20.0%
!! TTCATGTTATGACTTATAAT+TGG - chr1_4:65404308-65404327 Msa0178040:CDS 20.0%
!! GAAATTGATGAAATCATTAA+AGG - chr1_4:65405379-65405398 Msa0178040:CDS 20.0%
!!! TTTTAGAAAAAAAATACTCC+AGG + chr1_4:65405481-65405500 None:intergenic 20.0%
!!! CATTTTTCCATGAATAATAT+AGG - chr1_4:65405807-65405826 Msa0178040:CDS 20.0%
!! TGTATTTGAAAATGTAGATT+CGG + chr1_4:65406091-65406110 None:intergenic 20.0%
!! ACAAAATTTAAACTCCATAA+AGG + chr1_4:65406567-65406586 None:intergenic 20.0%
!!! ATTGGAAATTTAAGACTATT+AGG - chr1_4:65407058-65407077 Msa0178040:five_prime_UTR 20.0%
!!! TTGGAAATTTAAGACTATTA+GGG - chr1_4:65407059-65407078 Msa0178040:five_prime_UTR 20.0%
!! CAAAAAAGAAAACAGAAATA+AGG + chr1_4:65407342-65407361 None:intergenic 20.0%
!!! CTTATTTCTGTTTTCTTTTT+TGG - chr1_4:65407340-65407359 Msa0178040:five_prime_UTR 20.0%
! TGAAAAATAACAGAGTATGA+AGG + chr1_4:65403352-65403371 None:intergenic 25.0%
!! ATTTTCTCTCTCGATATTTT+GGG - chr1_4:65403375-65403394 Msa0178040:three_prime_UTR 25.0%
! AAAACCCACAACAAAATAAT+AGG + chr1_4:65403460-65403479 None:intergenic 25.0%
!!! TTGTTTTGTTATCTCTTTTG+GGG - chr1_4:65403518-65403537 Msa0178040:three_prime_UTR 25.0%
!!! TTGACCTAGTTTTTTTTTGT+TGG - chr1_4:65403986-65404005 Msa0178040:intron 25.0%
!!! TGATTTTTGGTTTTGTTTGT+TGG - chr1_4:65404018-65404037 Msa0178040:intron 25.0%
!!! ATGTTTTTGGTTTTGTTTGT+TGG - chr1_4:65404049-65404068 Msa0178040:intron 25.0%
!!! GGTTTTGTTTAATGGTTATA+AGG - chr1_4:65404088-65404107 Msa0178040:intron 25.0%
! TGTACATAATATTCACAACA+AGG + chr1_4:65404143-65404162 None:intergenic 25.0%
! CCAAAATATCAAATAAGCAT+AGG + chr1_4:65404189-65404208 None:intergenic 25.0%
!! CCTATGCTTATTTGATATTT+TGG - chr1_4:65404186-65404205 Msa0178040:intron 25.0%
!!! ATATTTTGGATGTGTTTTTC+AGG - chr1_4:65404200-65404219 Msa0178040:intron 25.0%
! AAAAACCTTATCGAAACAAA+TGG + chr1_4:65404248-65404267 None:intergenic 25.0%
!!! TAAGGTTTTTGTGTGTTATT+TGG - chr1_4:65404258-65404277 Msa0178040:intron 25.0%
!!! AAGGTTTTTGTGTGTTATTT+GGG - chr1_4:65404259-65404278 Msa0178040:intron 25.0%
!! TATAATTGGTGTTTATTCGA+TGG - chr1_4:65404322-65404341 Msa0178040:CDS 25.0%
!! ATAATTGGTGTTTATTCGAT+GGG - chr1_4:65404323-65404342 Msa0178040:CDS 25.0%
!!! TGTCAGCTTTATCTATTTTT+TGG - chr1_4:65404449-65404468 Msa0178040:CDS 25.0%
!!! GTCAGCTTTATCTATTTTTT+GGG - chr1_4:65404450-65404469 Msa0178040:CDS 25.0%
!!! TCAGCTTTATCTATTTTTTG+GGG - chr1_4:65404451-65404470 Msa0178040:CDS 25.0%
! TTGAGAACCAAAAATATCTA+CGG + chr1_4:65404553-65404572 None:intergenic 25.0%
!! CTTGTATATGTTGGTAAATA+TGG - chr1_4:65404595-65404614 Msa0178040:CDS 25.0%
!!! TCCTTAAAATAATGGGTTTT+TGG - chr1_4:65404643-65404662 Msa0178040:CDS 25.0%
!!! TCCAAAAACCCATTATTTTA+AGG + chr1_4:65404647-65404666 None:intergenic 25.0%
! AAACCAAAAGAAATGAAGAA+GGG + chr1_4:65404729-65404748 None:intergenic 25.0%
! GAAATGTGATATACAATTCT+CGG - chr1_4:65404908-65404927 Msa0178040:intron 25.0%
! AAATCAAAATAGTCAGTTGA+AGG + chr1_4:65405066-65405085 None:intergenic 25.0%
! ACCATTTAAAGAAGAAGAAT+GGG - chr1_4:65405246-65405265 Msa0178040:CDS 25.0%
! TTAATGTAAATTCAGTTGAC+CGG - chr1_4:65405290-65405309 Msa0178040:CDS 25.0%
! TCAATTTCATCATCAAACAA+CGG + chr1_4:65405367-65405386 None:intergenic 25.0%
! CAACAACAAAAAAGGAATAA+AGG + chr1_4:65405524-65405543 None:intergenic 25.0%
!!! TTATTCCTTTTTTGTTGTTG+CGG - chr1_4:65405524-65405543 Msa0178040:intron 25.0%
! AAAACAGATGATTACATACA+TGG + chr1_4:65405575-65405594 None:intergenic 25.0%
!! AAACTTTGCAGCTTTTTATA+AGG - chr1_4:65405659-65405678 Msa0178040:CDS 25.0%
!! AACTTTGCAGCTTTTTATAA+GGG - chr1_4:65405660-65405679 Msa0178040:CDS 25.0%
!! TGATTTTACTTTCTTCGATT+TGG - chr1_4:65406452-65406471 Msa0178040:intron 25.0%
! CCAAAAACTATGACAAATTA+GGG + chr1_4:65406696-65406715 None:intergenic 25.0%
! ACCAAAAACTATGACAAATT+AGG + chr1_4:65406697-65406716 None:intergenic 25.0%
! TTTGGATTTACATATTCAAG+GGG + chr1_4:65407095-65407114 None:intergenic 25.0%
! CTTTGGATTTACATATTCAA+GGG + chr1_4:65407096-65407115 None:intergenic 25.0%
! ACTTTGGATTTACATATTCA+AGG + chr1_4:65407097-65407116 None:intergenic 25.0%
! TCTCTTCAGAATTAAATGAA+AGG - chr1_4:65407147-65407166 Msa0178040:five_prime_UTR 25.0%
! TGTTGTAAATATTCAACTCA+AGG - chr1_4:65407212-65407231 Msa0178040:five_prime_UTR 25.0%
! TAAATATTCAACTCAAGGTA+AGG - chr1_4:65407217-65407236 Msa0178040:five_prime_UTR 25.0%
!! TCTAGAATTAAAGCTGAATT+TGG + chr1_4:65407254-65407273 None:intergenic 25.0%
! ATCATTCTTCCTCATTTTGT+AGG - chr1_4:65403254-65403273 Msa0178040:three_prime_UTR 30.0%
! AAAGGTTTAGGATAGTGTTA+TGG + chr1_4:65403316-65403335 None:intergenic 30.0%
TATTGTAAGGTGAAAGGTTT+AGG + chr1_4:65403328-65403347 None:intergenic 30.0%
AGAGTATGAAGGTTATTGTA+AGG + chr1_4:65403341-65403360 None:intergenic 30.0%
CAAAATATCGAGAGAGAAAA+TGG + chr1_4:65403376-65403395 None:intergenic 30.0%
! CATTTTCTCTCTCGATATTT+TGG - chr1_4:65403374-65403393 Msa0178040:three_prime_UTR 30.0%
!! TCGATCCTATTATTTTGTTG+TGG - chr1_4:65403452-65403471 Msa0178040:three_prime_UTR 30.0%
!! CGATCCTATTATTTTGTTGT+GGG - chr1_4:65403453-65403472 Msa0178040:three_prime_UTR 30.0%
TGAATCAGTCAATATTGTTG+TGG - chr1_4:65403619-65403638 Msa0178040:CDS 30.0%
GAATCAGTCAATATTGTTGT+GGG - chr1_4:65403620-65403639 Msa0178040:CDS 30.0%
! TCAATATTGTTGTGGGTTTT+TGG - chr1_4:65403627-65403646 Msa0178040:CDS 30.0%
!! GGTTTTGATCGAAAAAGTTT+CGG - chr1_4:65403648-65403667 Msa0178040:CDS 30.0%
! ATCGAAAAAGTTTCGGTTTT+TGG - chr1_4:65403655-65403674 Msa0178040:CDS 30.0%
! TGGTGATGTATTATCTGAAA+AGG - chr1_4:65403814-65403833 Msa0178040:CDS 30.0%
TATCTGAAAAGGAAGATTTG+TGG - chr1_4:65403825-65403844 Msa0178040:CDS 30.0%
ATCTGAAAAGGAAGATTTGT+GGG - chr1_4:65403826-65403845 Msa0178040:CDS 30.0%
! ACCTTTTATGTTTTTCCGAT+TGG - chr1_4:65403949-65403968 Msa0178040:intron 30.0%
ACCAATCGGAAAAACATAAA+AGG + chr1_4:65403953-65403972 None:intergenic 30.0%
ACAAAATGACAATCACCAAT+CGG + chr1_4:65403967-65403986 None:intergenic 30.0%
! GTTGGTTATGTTCATGTTTT+TGG - chr1_4:65404067-65404086 Msa0178040:intron 30.0%
!! ATGGTTATAAGGTGTTGATT+TGG - chr1_4:65404099-65404118 Msa0178040:intron 30.0%
!! TGGTTATAAGGTGTTGATTT+GGG - chr1_4:65404100-65404119 Msa0178040:intron 30.0%
! TTACCCTTCTTCATTTCTTT+TGG - chr1_4:65404723-65404742 Msa0178040:CDS 30.0%
CAAACCAAAAGAAATGAAGA+AGG + chr1_4:65404730-65404749 None:intergenic 30.0%
! TCTTTTTCTGTCATAGAGAT+AGG - chr1_4:65404815-65404834 Msa0178040:CDS 30.0%
!! AAGACACTTGTTTTCTATCT+TGG - chr1_4:65404946-65404965 Msa0178040:intron 30.0%
AAGGTAATACCTTAACATCA+CGG + chr1_4:65405047-65405066 None:intergenic 30.0%
!! TACAAGGTTTTCAAGAAAAG+TGG - chr1_4:65405190-65405209 Msa0178040:intron 30.0%
CACCATTTAAAGAAGAAGAA+TGG - chr1_4:65405245-65405264 Msa0178040:CDS 30.0%
TAATGTAAATTCAGTTGACC+GGG - chr1_4:65405291-65405310 Msa0178040:CDS 30.0%
!!! TATTCCTTTTTTGTTGTTGC+GGG - chr1_4:65405525-65405544 Msa0178040:intron 30.0%
GAGATCAAAACTACAAAAAC+AGG + chr1_4:65405603-65405622 None:intergenic 30.0%
AGAAGAACAATACTACAATC+AGG + chr1_4:65405731-65405750 None:intergenic 30.0%
TCAGCAACCTATATTATTCA+TGG + chr1_4:65405817-65405836 None:intergenic 30.0%
TGATGAAGAAACACGAAATA+TGG - chr1_4:65405834-65405853 Msa0178040:CDS 30.0%
! ATCAAACTGTTGATGAATTC+TGG - chr1_4:65406313-65406332 Msa0178040:intron 30.0%
!! TTTACTTTCTTCGATTTGGA+TGG - chr1_4:65406456-65406475 Msa0178040:intron 30.0%
TTCTGCTTAGAAAATGTCAT+AGG - chr1_4:65406666-65406685 Msa0178040:intron 30.0%
!! CCCTAATTTGTCATAGTTTT+TGG - chr1_4:65406693-65406712 Msa0178040:intron 30.0%
!!! CATAGTTTTTGGTCATGTTT+AGG - chr1_4:65406704-65406723 Msa0178040:intron 30.0%
CACATAAAGCAATAAGAATC+GGG + chr1_4:65407021-65407040 None:intergenic 30.0%
GCACATAAAGCAATAAGAAT+CGG + chr1_4:65407022-65407041 None:intergenic 30.0%
! GAAATTTAAGACTATTAGGG+AGG - chr1_4:65407062-65407081 Msa0178040:five_prime_UTR 30.0%
TATCTATAGCAGCAAAACTT+TGG + chr1_4:65407113-65407132 None:intergenic 30.0%
!! TCAGCTTTAATTCTAGAGTA+AGG - chr1_4:65407257-65407276 Msa0178040:five_prime_UTR 30.0%
!! CAGCTTTAATTCTAGAGTAA+GGG - chr1_4:65407258-65407277 Msa0178040:five_prime_UTR 30.0%
! TTGGTCATCTTTTATTCTAC+AGG - chr1_4:65407382-65407401 Msa0178040:five_prime_UTR 30.0%
! TGGTCATCTTTTATTCTACA+GGG - chr1_4:65407383-65407402 Msa0178040:five_prime_UTR 30.0%
GATAGTGTTATGGTCAAAGA+AGG + chr1_4:65403306-65403325 None:intergenic 35.0%
GAAGGTTATTGTAAGGTGAA+AGG + chr1_4:65403334-65403353 None:intergenic 35.0%
AATAATAGGATCGAACCTCT+GGG + chr1_4:65403446-65403465 None:intergenic 35.0%
AAATAATAGGATCGAACCTC+TGG + chr1_4:65403447-65403466 None:intergenic 35.0%
TCGTCAATTCCAACTATCTA+AGG - chr1_4:65403594-65403613 Msa0178040:CDS 35.0%
TGATTCAAGCCTTAGATAGT+TGG + chr1_4:65403606-65403625 None:intergenic 35.0%
!!! AAAGTTTCGGTTTTTGGTTC+TGG - chr1_4:65403661-65403680 Msa0178040:CDS 35.0%
!!! AAGTTTCGGTTTTTGGTTCT+GGG - chr1_4:65403662-65403681 Msa0178040:CDS 35.0%
! TTTTTGTCTTCTGATCGAGA+TGG - chr1_4:65403701-65403720 Msa0178040:CDS 35.0%
! TTTTGTCTTCTGATCGAGAT+GGG - chr1_4:65403702-65403721 Msa0178040:CDS 35.0%
GTTGAAGTTCAACGTTATCA+AGG - chr1_4:65403854-65403873 Msa0178040:CDS 35.0%
GAAGAGCAAAATCAAATACC+AGG + chr1_4:65403915-65403934 None:intergenic 35.0%
TGTACAGTACTTAGCAATTC+AGG - chr1_4:65404157-65404176 Msa0178040:intron 35.0%
GACTTCCATTTGTTTCGATA+AGG - chr1_4:65404240-65404259 Msa0178040:intron 35.0%
! TTGAGATCTCTTGGTTGATA+TGG - chr1_4:65404478-65404497 Msa0178040:CDS 35.0%
! GATAGGTCCGTAGATATTTT+TGG - chr1_4:65404543-65404562 Msa0178040:CDS 35.0%
GATGATCTGCTTGTATATGT+TGG - chr1_4:65404586-65404605 Msa0178040:CDS 35.0%
GAACAATCTTTCCTGAAAAC+TGG - chr1_4:65404778-65404797 Msa0178040:CDS 35.0%
!! AGAGATAGGAAGTATCCTAA+CGG - chr1_4:65404829-65404848 Msa0178040:intron 35.0%
ATATACAATTCTCGGTCAGT+TGG - chr1_4:65404916-65404935 Msa0178040:intron 35.0%
GGACTATTATGCACTTTACA+AGG - chr1_4:65405174-65405193 Msa0178040:intron 35.0%
GCCCATTCTTCTTCTTTAAA+TGG + chr1_4:65405250-65405269 None:intergenic 35.0%
! GCAGCTTTTTATAAGGGTTT+TGG - chr1_4:65405666-65405685 Msa0178040:CDS 35.0%
!! GCTTTTTATAAGGGTTTTGG+TGG - chr1_4:65405669-65405688 Msa0178040:CDS 35.0%
!!! CTCTCTTGTTTTCCTTCTAT+TGG - chr1_4:65405749-65405768 Msa0178040:CDS 35.0%
TATGAGAGAAGACCAATAGA+AGG + chr1_4:65405764-65405783 None:intergenic 35.0%
AGAAACACGAAATATGGTCA+TGG - chr1_4:65405840-65405859 Msa0178040:CDS 35.0%
!!! CTAGATTGCTGTTTTTCACT+TGG + chr1_4:65405898-65405917 None:intergenic 35.0%
TGATGATTGAAGTCAAAGCT+GGG + chr1_4:65405943-65405962 None:intergenic 35.0%
! TTGATGATTGAAGTCAAAGC+TGG + chr1_4:65405944-65405963 None:intergenic 35.0%
AAAGAAACATCTCTGCATCT+TGG + chr1_4:65406182-65406201 None:intergenic 35.0%
CATGCATATATGAATAGCAC+TGG - chr1_4:65406237-65406256 Msa0178040:intron 35.0%
TCTTTCTCTCTAACAAATCC+AGG - chr1_4:65406384-65406403 Msa0178040:intron 35.0%
ACAAATCCAGGTATAGTCAT+TGG - chr1_4:65406396-65406415 Msa0178040:intron 35.0%
!! GTTTTTGAGCCAATTTCAAG+TGG - chr1_4:65406640-65406659 Msa0178040:intron 35.0%
! TGATTTTCAGTGCTTTCAGT+AGG + chr1_4:65406755-65406774 None:intergenic 35.0%
!! GGTAGGTATTGAATCAACAA+AGG + chr1_4:65406831-65406850 None:intergenic 35.0%
CTGAAAATCCCTTGGTAAAT+CGG - chr1_4:65406867-65406886 Msa0178040:CDS 35.0%
TGAAAATCCCTTGGTAAATC+GGG - chr1_4:65406868-65406887 Msa0178040:CDS 35.0%
CAATAAGAATCGGGAAGAAA+AGG + chr1_4:65407012-65407031 None:intergenic 35.0%
TTGCTTTATGTGCTTTCTTG+TGG - chr1_4:65407029-65407048 Msa0178040:five_prime_UTR 35.0%
TGCTTTATGTGCTTTCTTGT+GGG - chr1_4:65407030-65407049 Msa0178040:five_prime_UTR 35.0%
TTCAACTCAAGGTAAGGTTT+AGG - chr1_4:65407223-65407242 Msa0178040:five_prime_UTR 35.0%
TAGTGAGTTTGTGAGCTTGT+TGG + chr1_4:65403208-65403227 None:intergenic 40.0%
TGGAAGGTTCCTACAAAATG+AGG + chr1_4:65403266-65403285 None:intergenic 40.0%
AAGAAGGAAGCTAAGGTAAG+TGG + chr1_4:65403290-65403309 None:intergenic 40.0%
ATGGTCAAAGAAGGAAGCTA+AGG + chr1_4:65403297-65403316 None:intergenic 40.0%
!!! TTTTTGGTTCTGGGTAATCG+AGG - chr1_4:65403671-65403690 Msa0178040:CDS 40.0%
!!! TTTTGGTTCTGGGTAATCGA+GGG - chr1_4:65403672-65403691 Msa0178040:CDS 40.0%
! TTCTGCTGATTGTTTCAGTG+AGG - chr1_4:65403743-65403762 Msa0178040:CDS 40.0%
AGGAAACTGATGTGTACAAG+TGG - chr1_4:65403874-65403893 Msa0178040:CDS 40.0%
GGAAACTGATGTGTACAAGT+GGG - chr1_4:65403875-65403894 Msa0178040:CDS 40.0%
CAAATACCAGGTAAATCCTC+AGG + chr1_4:65403903-65403922 None:intergenic 40.0%
CAAATGGAAGTCAACTCTTG+AGG + chr1_4:65404232-65404251 None:intergenic 40.0%
! ATTGGTGTTTATTCGATGGG+TGG - chr1_4:65404326-65404345 Msa0178040:CDS 40.0%
AACTCGTACAAACAGATTCG+CGG + chr1_4:65404354-65404373 None:intergenic 40.0%
TGGTGATCAGTCTTACATCT+AGG + chr1_4:65404397-65404416 None:intergenic 40.0%
AGTTTCCTTCAGTGCATGAT+AGG - chr1_4:65404526-65404545 Msa0178040:CDS 40.0%
CTTAAGCTCATCTTCATCCA+TGG + chr1_4:65405019-65405038 None:intergenic 40.0%
TAAGACATGCCGTGATGTTA+AGG - chr1_4:65405035-65405054 Msa0178040:intron 40.0%
!! GGTTTTCAAGAAAAGTGGAC+CGG - chr1_4:65405195-65405214 Msa0178040:intron 40.0%
!! GTTTTCAAGAAAAGTGGACC+GGG - chr1_4:65405196-65405215 Msa0178040:intron 40.0%
CATAACCATTCACATGTTGC+TGG + chr1_4:65405432-65405451 None:intergenic 40.0%
!! TGGTTATGTTGACTTTCCTC+AGG - chr1_4:65405444-65405463 Msa0178040:CDS 40.0%
!!! CTTTTTTGTTGTTGCGGGTA+GGG - chr1_4:65405530-65405549 Msa0178040:intron 40.0%
!!! TTTTTTGTTGTTGCGGGTAG+GGG - chr1_4:65405531-65405550 Msa0178040:intron 40.0%
CATGGAAAAATGTCTGTCAG+CGG + chr1_4:65405799-65405818 None:intergenic 40.0%
GGTCATGGATCAATTCTATG+AGG - chr1_4:65405855-65405874 Msa0178040:CDS 40.0%
ACTTGGATCAGGGAATATCA+TGG + chr1_4:65405881-65405900 None:intergenic 40.0%
!!! GCTGTTTTTCACTTGGATCA+GGG + chr1_4:65405891-65405910 None:intergenic 40.0%
!!! TGCTGTTTTTCACTTGGATC+AGG + chr1_4:65405892-65405911 None:intergenic 40.0%
TCAACACATCTTCAAACTGG+AGG + chr1_4:65406143-65406162 None:intergenic 40.0%
CACTCAACACATCTTCAAAC+TGG + chr1_4:65406146-65406165 None:intergenic 40.0%
AACATCTCTGCATCTTGGTA+AGG + chr1_4:65406177-65406196 None:intergenic 40.0%
GATGCAGAGATGTTTCTTTG+TGG - chr1_4:65406183-65406202 Msa0178040:intron 40.0%
TTTCTTCGTTAATAGACCCC+AGG + chr1_4:65406209-65406228 None:intergenic 40.0%
!! TTGATTTGCGTCTTCTGGAT+TGG + chr1_4:65406298-65406317 None:intergenic 40.0%
!! ACAGTTTGATTTGCGTCTTC+TGG + chr1_4:65406303-65406322 None:intergenic 40.0%
AAGCTACAATGTTGCTCAAC+TGG - chr1_4:65406422-65406441 Msa0178040:intron 40.0%
TTCAAAGCCCGATTTACCAA+GGG + chr1_4:65406878-65406897 None:intergenic 40.0%
ATTCAAAGCCCGATTTACCA+AGG + chr1_4:65406879-65406898 None:intergenic 40.0%
GCTTTCTTGTGGGTTTCTAT+TGG - chr1_4:65407040-65407059 Msa0178040:five_prime_UTR 40.0%
! TCTAGAGTAAGGGCTTGTAT+CGG - chr1_4:65407268-65407287 Msa0178040:five_prime_UTR 40.0%
ACCAAAACTTGATACTACGC+GGG + chr1_4:65407367-65407386 None:intergenic 40.0%
GACCAAAACTTGATACTACG+CGG + chr1_4:65407368-65407387 None:intergenic 40.0%
CTAGTCACTACCTCACTCAA+AGG - chr1_4:65403225-65403244 Msa0178040:three_prime_UTR 45.0%
TGATTCAGTGCCTTTGAGTG+AGG + chr1_4:65403238-65403257 None:intergenic 45.0%
AGCTAAGGTAAGTGGTTGGA+AGG + chr1_4:65403282-65403301 None:intergenic 45.0%
AGGAAGCTAAGGTAAGTGGT+TGG + chr1_4:65403286-65403305 None:intergenic 45.0%
GTTGGATGAAAGCGAAAACC+TGG + chr1_4:65403783-65403802 None:intergenic 45.0%
TCGCTTTCATCCAACAGATG+AGG - chr1_4:65403788-65403807 Msa0178040:CDS 45.0%
TCATCCAACAGATGAGGAGT+TGG - chr1_4:65403794-65403813 Msa0178040:CDS 45.0%
ATCACCAACTCCTCATCTGT+TGG + chr1_4:65403801-65403820 None:intergenic 45.0%
TGTCAATGAACCCCACAAAG+GGG + chr1_4:65404428-65404447 None:intergenic 45.0%
GTGTCAATGAACCCCACAAA+GGG + chr1_4:65404429-65404448 None:intergenic 45.0%
AGTGTCAATGAACCCCACAA+AGG + chr1_4:65404430-65404449 None:intergenic 45.0%
TGGGGTATGTTGAGATCTCT+TGG - chr1_4:65404469-65404488 Msa0178040:CDS 45.0%
! CTCTTGGTTGATATGGTCAG+TGG - chr1_4:65404485-65404504 Msa0178040:CDS 45.0%
CTTTCCTGAAAACTGGAGAC+AGG - chr1_4:65404785-65404804 Msa0178040:CDS 45.0%
! ATTGCCTGTCTCCAGTTTTC+AGG + chr1_4:65404792-65404811 None:intergenic 45.0%
TGAAAACTGGAGACAGGCAA+TGG - chr1_4:65404791-65404810 Msa0178040:CDS 45.0%
!! GATAGGAAGTATCCTAACGG+TGG - chr1_4:65404832-65404851 Msa0178040:intron 45.0%
TCTAGTCGAGCAACTAGACA+TGG - chr1_4:65404859-65404878 Msa0178040:intron 45.0%
TAGTGGTGAGCGAACTGATT+GGG - chr1_4:65404978-65404997 Msa0178040:intron 45.0%
GGTTATGCATGAGTACACCA+TGG - chr1_4:65404999-65405018 Msa0178040:intron 45.0%
CCATACTGTTCACCGTTCTT+AGG + chr1_4:65405223-65405242 None:intergenic 45.0%
CCTAAGAACGGTGAACAGTA+TGG - chr1_4:65405220-65405239 Msa0178040:CDS 45.0%
TGTAAATTCAGTTGACCGGG+AGG - chr1_4:65405294-65405313 Msa0178040:CDS 45.0%
CATTCACATGTTGCTGGTCA+AGG + chr1_4:65405426-65405445 None:intergenic 45.0%
CTTGACCAGCAACATGTGAA+TGG - chr1_4:65405424-65405443 Msa0178040:CDS 45.0%
CCTACCCGCAACAACAAAAA+AGG + chr1_4:65405532-65405551 None:intergenic 45.0%
!!! CCTTTTTTGTTGTTGCGGGT+AGG - chr1_4:65405529-65405548 Msa0178040:intron 45.0%
!!! TTTTTGTTGTTGCGGGTAGG+GGG - chr1_4:65405532-65405551 Msa0178040:intron 45.0%
!! GTGTATTTCTGAAGCACCTG+AGG - chr1_4:65405981-65406000 Msa0178040:intron 45.0%
TCCACTCCGAACATTCAAAG+CGG - chr1_4:65406009-65406028 Msa0178040:intron 45.0%
! GAGCTTGTCTTTTACGAGGA+AGG - chr1_4:65406036-65406055 Msa0178040:intron 45.0%
! CTTTTACGAGGAAGGCTTCT+TGG - chr1_4:65406044-65406063 Msa0178040:intron 45.0%
AGAGATGTTTCTTTGTGGCC+TGG - chr1_4:65406188-65406207 Msa0178040:intron 45.0%
GAGATGTTTCTTTGTGGCCT+GGG - chr1_4:65406189-65406208 Msa0178040:intron 45.0%
AGATGTTTCTTTGTGGCCTG+GGG - chr1_4:65406190-65406209 Msa0178040:intron 45.0%
! CTTCTGGATTGGACAACAAC+TGG + chr1_4:65406287-65406306 None:intergenic 45.0%
AGTCCAGCTGAAGGTTATGA+TGG - chr1_4:65406360-65406379 Msa0178040:intron 45.0%
GAACCATCATAACCTTCAGC+TGG + chr1_4:65406366-65406385 None:intergenic 45.0%
CTTGTGCCAATGACTATACC+TGG + chr1_4:65406405-65406424 None:intergenic 45.0%
GAGCTCAGCAGAAATGAGAT+GGG + chr1_4:65406494-65406513 None:intergenic 45.0%
GCAGAAGAGCCACTTGAAAT+TGG + chr1_4:65406652-65406671 None:intergenic 45.0%
TAGATTCTCCTCAGCTCTGT+GGG - chr1_4:65406805-65406824 Msa0178040:CDS 45.0%
ATCAGCTGCTGAAAATCCCT+TGG - chr1_4:65406859-65406878 Msa0178040:CDS 45.0%
! ATCGAATGTCTAGCTTCAGC+AGG - chr1_4:65406897-65406916 Msa0178040:CDS 45.0%
! TCGAATGTCTAGCTTCAGCA+GGG - chr1_4:65406898-65406917 Msa0178040:CDS 45.0%
ACCTGCAGCAATGTTGTTGT+CGG + chr1_4:65406939-65406958 None:intergenic 45.0%
ACTGCAACTATGAAGAGAGC+AGG - chr1_4:65406968-65406987 Msa0178040:five_prime_UTR 45.0%
TATGAAGAGAGCAGGCAGAA+AGG - chr1_4:65406976-65406995 Msa0178040:five_prime_UTR 45.0%
ATGAAGAGAGCAGGCAGAAA+GGG - chr1_4:65406977-65406996 Msa0178040:five_prime_UTR 45.0%
! TCCCGCGTAGTATCAAGTTT+TGG - chr1_4:65407363-65407382 Msa0178040:five_prime_UTR 45.0%
GGTACGAGGATTCGAGGATT+AGG + chr1_4:65403425-65403444 None:intergenic 50.0%
TCTTCTGATCGAGATGGGTG+CGG - chr1_4:65403707-65403726 Msa0178040:CDS 50.0%
TGTGTACAAGTGGGATCCTG+AGG - chr1_4:65403884-65403903 Msa0178040:CDS 50.0%
TGGGATCCTGAGGATTTACC+TGG - chr1_4:65403894-65403913 Msa0178040:CDS 50.0%
AATGAACCCCACAAAGGGGA+GGG + chr1_4:65404424-65404443 None:intergenic 50.0%
ACGGACCTATCATGCACTGA+AGG + chr1_4:65404534-65404553 None:intergenic 50.0%
!! GGAAGTATCCTAACGGTGGA+AGG - chr1_4:65404836-65404855 Msa0178040:intron 50.0%
GAGCAACTAGACATGGCTAC+TGG - chr1_4:65404866-65404885 Msa0178040:intron 50.0%
CATGGCTACTGGAAAGCTAC+TGG - chr1_4:65404877-65404896 Msa0178040:intron 50.0%
TATCTTGGCAGAGCTCCTAG+TGG - chr1_4:65404961-65404980 Msa0178040:intron 50.0%
CAATCAGTTCGCTCACCACT+AGG + chr1_4:65404979-65404998 None:intergenic 50.0%
CTAGTGGTGAGCGAACTGAT+TGG - chr1_4:65404977-65404996 Msa0178040:intron 50.0%
TGTTCACCGTTCTTAGGACC+CGG + chr1_4:65405217-65405236 None:intergenic 50.0%
ACATTGTCAACAGCAGCCTC+TGG + chr1_4:65405322-65405341 None:intergenic 50.0%
ACATGTTGCTGGTCAAGGAC+AGG + chr1_4:65405421-65405440 None:intergenic 50.0%
CCACTCCGAACATTCAAAGC+GGG - chr1_4:65406010-65406029 Msa0178040:intron 50.0%
CACTCCGAACATTCAAAGCG+GGG - chr1_4:65406011-65406030 Msa0178040:intron 50.0%
! TCCTCCCCGCTTTGAATGTT+CGG + chr1_4:65406018-65406037 None:intergenic 50.0%
! GGAGGAGCTTGTCTTTTACG+AGG - chr1_4:65406032-65406051 Msa0178040:intron 50.0%
ATAACCTTCAGCTGGACTGC+GGG + chr1_4:65406358-65406377 None:intergenic 50.0%
CATAACCTTCAGCTGGACTG+CGG + chr1_4:65406359-65406378 None:intergenic 50.0%
CGAGCTCAGCAGAAATGAGA+TGG + chr1_4:65406495-65406514 None:intergenic 50.0%
TCGTCACAGTTTACTGCTCC+TGG - chr1_4:65406512-65406531 Msa0178040:intron 50.0%
! GGTGTTGTGTGTGACTCTGT+CGG - chr1_4:65406725-65406744 Msa0178040:intron 50.0%
GTAGATTCTCCTCAGCTCTG+TGG - chr1_4:65406804-65406823 Msa0178040:CDS 50.0%
! GGATTTTCAGCAGCTGATGC+AGG + chr1_4:65406857-65406876 None:intergenic 50.0%
GCAGCAATGTTGTTGTCGGT+GGG + chr1_4:65406935-65406954 None:intergenic 50.0%
TGCAGCAATGTTGTTGTCGG+TGG + chr1_4:65406936-65406955 None:intergenic 50.0%
ACCGACAACAACATTGCTGC+AGG - chr1_4:65406935-65406954 Msa0178040:exon 50.0%
TGAAGAGAGCAGGCAGAAAG+GGG - chr1_4:65406978-65406997 Msa0178040:five_prime_UTR 50.0%
GATCGAGATGGGTGCGGTTT+CGG - chr1_4:65403713-65403732 Msa0178040:CDS 55.0%
ATGAACCCCACAAAGGGGAG+GGG + chr1_4:65404423-65404442 None:intergenic 55.0%
CAATGAACCCCACAAAGGGG+AGG + chr1_4:65404425-65404444 None:intergenic 55.0%
CGACTAGACCTTCCACCGTT+AGG + chr1_4:65404847-65404866 None:intergenic 55.0%
AGTGGACCGGGTCCTAAGAA+CGG - chr1_4:65405208-65405227 Msa0178040:CDS 55.0%
TTCGGAGTGGAAGTGACCTC+AGG + chr1_4:65406000-65406019 None:intergenic 55.0%
! CCCGCTTTGAATGTTCGGAG+TGG + chr1_4:65406013-65406032 None:intergenic 55.0%
TCCGAACATTCAAAGCGGGG+AGG - chr1_4:65406014-65406033 Msa0178040:intron 55.0%
GCGCGTGGCAGAAACCTTTA+TGG - chr1_4:65406550-65406569 Msa0178040:intron 55.0%
AACAAAGGCCCACAGAGCTG+AGG + chr1_4:65406816-65406835 None:intergenic 55.0%
TTCAGCAGCTGATGCAGGAG+TGG + chr1_4:65406852-65406871 None:intergenic 55.0%
GAAGAGAGCAGGCAGAAAGG+GGG - chr1_4:65406979-65406998 Msa0178040:five_prime_UTR 55.0%
CCTCTGGGTACGAGGATTCG+AGG + chr1_4:65403431-65403450 None:intergenic 60.0%
CCTCGAATCCTCGTACCCAG+AGG - chr1_4:65403428-65403447 Msa0178040:three_prime_UTR 60.0%
GGATCGAACCTCTGGGTACG+AGG + chr1_4:65403439-65403458 None:intergenic 60.0%
GAGGTGATGTCGTCGATGCC+AGG - chr1_4:65403762-65403781 Msa0178040:CDS 60.0%
ACCAGTTCCCCTCCCCTTTG+TGG - chr1_4:65404413-65404432 Msa0178040:CDS 60.0%
CCAGTTCCCCTCCCCTTTGT+GGG - chr1_4:65404414-65404433 Msa0178040:CDS 60.0%
CAGTTCCCCTCCCCTTTGTG+GGG - chr1_4:65404415-65404434 Msa0178040:CDS 60.0%
AGTTGACCGGGAGGTTCCAG+AGG - chr1_4:65405303-65405322 Msa0178040:CDS 60.0%
CCAGGCAGATCACACACCTG+AGG + chr1_4:65405463-65405482 None:intergenic 60.0%
CCTCAGGTGTGTGATCTGCC+TGG - chr1_4:65405460-65405479 Msa0178040:CDS 60.0%
! TTGTTGTTGCGGGTAGGGGG+AGG - chr1_4:65405535-65405554 Msa0178040:intron 60.0%
AACACCCGCAGTCCAGCTGA+AGG - chr1_4:65406351-65406370 Msa0178040:intron 60.0%
! CGCAAGTTGGCGTGTCAACC+AGG + chr1_4:65406533-65406552 None:intergenic 60.0%
TTGACACGCCAACTTGCGCG+TGG - chr1_4:65406535-65406554 Msa0178040:intron 60.0%
GGTTTCTGCCACGCGCAAGT+TGG + chr1_4:65406546-65406565 None:intergenic 60.0%
GCAGCTGATGCAGGAGTGGT+AGG + chr1_4:65406848-65406867 None:intergenic 60.0%
CCCACAAAGGGGAGGGGAAC+TGG + chr1_4:65404417-65404436 None:intergenic 65.0%
!! CAGCAGCCTCTGGAACCTCC+CGG + chr1_4:65405312-65405331 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 65403203 65407466 65403203 ID=Msa0178040;Name=Msa0178040
chr1_4 mRNA 65403203 65407466 65403203 ID=Msa0178040-mRNA-1;Parent=Msa0178040;Name=Msa0178040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=517|1|1|1|1|1|5|367|571
chr1_4 exon 65403203 65403943 65403203 ID=Msa0178040-mRNA-1:exon:21278;Parent=Msa0178040-mRNA-1
chr1_4 exon 65404264 65404840 65404264 ID=Msa0178040-mRNA-1:exon:21277;Parent=Msa0178040-mRNA-1
chr1_4 exon 65405204 65405494 65405204 ID=Msa0178040-mRNA-1:exon:21276;Parent=Msa0178040-mRNA-1
chr1_4 exon 65405613 65405890 65405613 ID=Msa0178040-mRNA-1:exon:21275;Parent=Msa0178040-mRNA-1
chr1_4 exon 65406754 65407466 65406754 ID=Msa0178040-mRNA-1:exon:21274;Parent=Msa0178040-mRNA-1
chr1_4 five_prime_UTR 65406950 65407466 65406950 ID=Msa0178040-mRNA-1:five_prime_utr;Parent=Msa0178040-mRNA-1
chr1_4 CDS 65406754 65406949 65406754 ID=Msa0178040-mRNA-1:cds;Parent=Msa0178040-mRNA-1
chr1_4 CDS 65405613 65405890 65405613 ID=Msa0178040-mRNA-1:cds;Parent=Msa0178040-mRNA-1
chr1_4 CDS 65405204 65405494 65405204 ID=Msa0178040-mRNA-1:cds;Parent=Msa0178040-mRNA-1
chr1_4 CDS 65404264 65404840 65404264 ID=Msa0178040-mRNA-1:cds;Parent=Msa0178040-mRNA-1
chr1_4 CDS 65403570 65403943 65403570 ID=Msa0178040-mRNA-1:cds;Parent=Msa0178040-mRNA-1
chr1_4 three_prime_UTR 65403203 65403569 65403203 ID=Msa0178040-mRNA-1:three_prime_utr;Parent=Msa0178040-mRNA-1
Gene Sequence

>Msa0178040

ATGGGTGCGGTTTCGGAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCGATGCCAGGTTTTCGCTTTCATCCAACAGATGAGGAGTTGGTGATGTATTATCTGAAAAGGAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTTATCAAGGAAACTGATGTGTACAAGTGGGATCCTGAGGATTTACCTGAACAATCTTTCCTGAAAACTGGAGACAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAACGGTGGAAGGTCTAGTCGAGCAACTAGACATGGCTACTGGAAAGCTACTGGAAAAGATCGAAATGTGATATACAATTCTCGGTCAGTTGGAGTGAAAAAGACACTTGTTTTCTATCTTGGCAGAGCTCCTAGTGGTGAGCGAACTGATTGGGTTATGCATGAGTACACCATGGATGAAGATGAGCTTAAGACATGCCGTGATGTTAAGGACTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCGGGTCCTAAGAACGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGAATGGGCAGATGACGATGTTGTAGATTTTAATGTAAATTCAGTTGACCGGGAGGTTCCAGAGGCTGCTGTTGACAATGTTATTGATCAGCATCAGCTGCAGCCGTTGTTTGATGATGAAATTGATGAAATCATTAAAGGGATGCTTGATGTTGAGCCTGTCCTTGACCAGCAACATGTGAATGGTTATGTTGACTTTCCTCAGGTTGCTGATGAAGAAACACGAAATATGGTCATGGATCAATTCTATGAGGCCATGATATTCCCTGATCCAAGTGAAAAACAGCAATCTAGCAGTCAGCTTTATGATGCGCAGCCCAGCTTTGACTTCAATCATCAATCAGTTGATTCTCACTTGTGTATTTCTGAAGCACCTGAGGTCACTTCCACTCCGAACATTCAAAGCGGGGAGGAGCTTGTCTTTTACGAGGAAGGCTTCTTGGAAATTAATGATCTCATTGATACCGAATCTACATTTTCAAATACAGATAAGCTTAACAACGATCTCATTGAGAACCTCCAGTTTGAAGATGTGTTGAGTGAATTTGATCCTTACCAAGATGCAGAGATGTTTCTTTGTGGCCTGGGGTCTATTAACGAAGAAACAGTTTCACATGCATATATGAATAGCACTGGCAGCAATATTGAAAATCAGAGTTACCAGTTGTTGTCCAATCCAGAAGACGCAAATCAAACTGTTGATGAATTCTGGATGCATGTTGAAAGAAACACCCGCAGTCCAGCTGAAGGTTATGATGGTTCTTTCTCTCTAACAAATCCAGGTGTTGTGTGTGACTCTGTCGGCTTTCCTACTGAAAGCACTGAAAATCAAAGAAGCACTGTAGAAGATGTTAAAACAAGTAGATTCTCCTCAGCTCTGTGGGCCTTTGTTGATTCAATACCTACCACTCCTGCATCAGCTGCTGAAAATCCCTTGGTAAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAAGATCAAGCCCACCGACAACAACATTGCTGCAGGTAATAATGACACTGCAACTATGAAGAGAGCAGGCAGAAAGGGGGTCTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGGTGCGTCTCCCCTTGA
Protein sequence

>Msa0178040

MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVIKETDVYKWDPEDLPEQSFLKTGDRQWFFFCHRDRKYPNGGRSSRATRHGYWKATGKDRNVIYNSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTMDEDELKTCRDVKDYYALYKVFKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNVNSVDREVPEAAVDNVIDQHQLQPLFDDEIDEIIKGMLDVEPVLDQQHVNGYVDFPQVADEETRNMVMDQFYEAMIFPDPSEKQQSSSQLYDAQPSFDFNHQSVDSHLCISEAPEVTSTPNIQSGEELVFYEEGFLEINDLIDTESTFSNTDKLNNDLIENLQFEDVLSEFDPYQDAEMFLCGLGSINEETVSHAYMNSTGSNIENQSYQLLSNPEDANQTVDEFWMHVERNTRSPAEGYDGSFSLTNPGVVCDSVGFPTESTENQRSTVEDVKTSRFSSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSRVKIKPTDNNIAAGNNDTATMKRAGRKGVSFLFFPILIALCAFLWVSIGNLRLLGRCVSP*