Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882400 | XP_013451617.1 | 95.627 | 343 | 15 | 0 | 1 | 343 | 1 | 343 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882400 | sp|Q9FMU6|MPCP3_ARATH | 68.392 | 367 | 98 | 2 | 3 | 352 | 6 | 371 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882400 | A0A072UIJ9 | 95.627 | 343 | 15 | 0 | 1 | 343 | 1 | 343 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0882400 | 0.815527 | 8.833316e-52 | -8.615850e-47 |
| Msa0007470 | Msa0882400 | 0.801446 | 8.970473e-49 | -8.615850e-47 |
| Msa0009340 | Msa0882400 | 0.803051 | 4.191472e-49 | -8.615850e-47 |
| Msa0012710 | Msa0882400 | 0.803247 | 3.817742e-49 | -8.615850e-47 |
| Msa0017320 | Msa0882400 | 0.811694 | 6.157852e-51 | -8.615850e-47 |
| Msa0679810 | Msa0882400 | 0.803716 | 3.052217e-49 | -8.615850e-47 |
| Msa0689780 | Msa0882400 | 0.811658 | 6.271203e-51 | -8.615850e-47 |
| Msa0724370 | Msa0882400 | 0.815681 | 8.163102e-52 | -8.615850e-47 |
| Msa0734940 | Msa0882400 | 0.829283 | 5.612610e-55 | -8.615850e-47 |
| Msa0742150 | Msa0882400 | 0.810521 | 1.106199e-50 | -8.615850e-47 |
| Msa0764920 | Msa0882400 | 0.847331 | 1.237160e-59 | -8.615850e-47 |
| Msa0775560 | Msa0882400 | 0.859721 | 3.399351e-63 | -8.615850e-47 |
| Msa0786070 | Msa0882400 | 0.801603 | 8.329415e-49 | -8.615850e-47 |
| Msa0805920 | Msa0882400 | 0.819950 | 8.871126e-53 | -8.615850e-47 |
| Msa0812950 | Msa0882400 | 0.867906 | 9.688531e-66 | -8.615850e-47 |
| Msa0823440 | Msa0882400 | 0.809567 | 1.775324e-50 | -8.615850e-47 |
| Msa0138020 | Msa0882400 | 0.804244 | 2.370854e-49 | -8.615850e-47 |
| Msa0142500 | Msa0882400 | 0.809939 | 1.476942e-50 | -8.615850e-47 |
| Msa0152560 | Msa0882400 | 0.813857 | 2.070160e-51 | -8.615850e-47 |
| Msa0187310 | Msa0882400 | 0.800240 | 1.581247e-48 | -8.615850e-47 |
| Msa0189610 | Msa0882400 | 0.819809 | 9.558655e-53 | -8.615850e-47 |
| Msa0213550 | Msa0882400 | 0.802942 | 4.415051e-49 | -8.615850e-47 |
| Msa0236420 | Msa0882400 | 0.812520 | 4.068112e-51 | -8.615850e-47 |
| Msa0364790 | Msa0882400 | 0.842588 | 2.359405e-58 | -8.615850e-47 |
| Msa0371950 | Msa0882400 | 0.817813 | 2.713949e-52 | -8.615850e-47 |
| Msa0388730 | Msa0882400 | 0.801421 | 9.074454e-49 | -8.615850e-47 |
| Msa0397250 | Msa0882400 | 0.816317 | 5.886739e-52 | -8.615850e-47 |
| Msa0397270 | Msa0882400 | 0.802368 | 5.798986e-49 | -8.615850e-47 |
| Msa0403490 | Msa0882400 | 0.801425 | 9.058127e-49 | -8.615850e-47 |
| Msa0427580 | Msa0882400 | 0.810003 | 1.430585e-50 | -8.615850e-47 |
| Msa0448610 | Msa0882400 | 0.811507 | 6.764109e-51 | -8.615850e-47 |
| Msa0240270 | Msa0882400 | 0.801126 | 1.043262e-48 | -8.615850e-47 |
| Msa0244140 | Msa0882400 | 0.803048 | 4.198310e-49 | -8.615850e-47 |
| Msa0244190 | Msa0882400 | 0.809928 | 1.485045e-50 | -8.615850e-47 |
| Msa0262370 | Msa0882400 | 0.802718 | 4.912700e-49 | -8.615850e-47 |
| Msa0270960 | Msa0882400 | 0.809182 | 2.147027e-50 | -8.615850e-47 |
| Msa0271550 | Msa0882400 | 0.809384 | 1.942903e-50 | -8.615850e-47 |
| Msa0302730 | Msa0882400 | 0.803271 | 3.774767e-49 | -8.615850e-47 |
| Msa0319290 | Msa0882400 | 0.832321 | 1.010580e-55 | -8.615850e-47 |
| Msa0347750 | Msa0882400 | 0.801511 | 8.700967e-49 | -8.615850e-47 |
| Msa0357830 | Msa0882400 | 0.803652 | 3.146926e-49 | -8.615850e-47 |
| Msa0484630 | Msa0882400 | 0.816316 | 5.888664e-52 | -8.615850e-47 |
| Msa0496970 | Msa0882400 | 0.810390 | 1.180234e-50 | -8.615850e-47 |
| Msa0518170 | Msa0882400 | 0.803352 | 3.632110e-49 | -8.615850e-47 |
| Msa0524440 | Msa0882400 | 0.818161 | 2.265144e-52 | -8.615850e-47 |
| Msa0545290 | Msa0882400 | 0.803699 | 3.077387e-49 | -8.615850e-47 |
| Msa0566750 | Msa0882400 | 0.800613 | 1.327724e-48 | -8.615850e-47 |
| Msa0600890 | Msa0882400 | 0.804225 | 2.392073e-49 | -8.615850e-47 |
| Msa0844110 | Msa0882400 | 0.821317 | 4.306792e-53 | -8.615850e-47 |
| Msa0844610 | Msa0882400 | 0.812813 | 3.509940e-51 | -8.615850e-47 |
| Msa0853440 | Msa0882400 | 0.848186 | 7.194284e-60 | -8.615850e-47 |
| Msa0882400 | Msa0898320 | 0.814322 | 1.634455e-51 | -8.615850e-47 |
| Msa0882400 | Msa0947480 | 0.909783 | 3.886836e-82 | -8.615850e-47 |
| Msa0882400 | Msa1013070 | 0.839918 | 1.188541e-57 | -8.615850e-47 |
| Msa0882400 | Msa1023300 | 0.834964 | 2.209760e-56 | -8.615850e-47 |
| Msa0882400 | Msa1023310 | 0.836010 | 1.202304e-56 | -8.615850e-47 |
| Msa0882400 | Msa1042660 | 0.805148 | 1.535193e-49 | -8.615850e-47 |
| Msa0882400 | Msa1054510 | 0.803759 | 2.990239e-49 | -8.615850e-47 |
| Msa0882400 | Msa1062040 | 0.830857 | 2.319325e-55 | -8.615850e-47 |
| Msa0882400 | Msa1094280 | 0.837541 | 4.890639e-57 | -8.615850e-47 |
| Msa0882400 | Msa1107190 | 0.812902 | 3.355826e-51 | -8.615850e-47 |
| Msa0882400 | Msa1107200 | 0.849940 | 2.340940e-60 | -8.615850e-47 |
| Msa0882400 | Msa1150780 | 0.852911 | 3.383339e-61 | -8.615850e-47 |
| Msa0882400 | Msa1150790 | 0.812919 | 3.326963e-51 | -8.615850e-47 |
| Msa0882400 | Msa1150800 | 0.832943 | 7.082554e-56 | -8.615850e-47 |
| Msa0882400 | Msa1150810 | 0.836768 | 7.709435e-57 | -8.615850e-47 |
| Msa0882400 | Msa1187590 | 0.810348 | 1.205185e-50 | -8.615850e-47 |
| Msa0882400 | Msa1208370 | 0.833628 | 4.780159e-56 | -8.615850e-47 |
| Msa0882400 | Msa1209190 | 0.800649 | 1.305304e-48 | -8.615850e-47 |
| Msa0882400 | Msa1209860 | 0.806340 | 8.627140e-50 | -8.615850e-47 |
| Msa0882400 | Msa1229610 | 0.810318 | 1.223177e-50 | -8.615850e-47 |
| Msa0882400 | Msa1270660 | 0.830153 | 3.447699e-55 | -8.615850e-47 |
| Msa0882400 | Msa1270730 | 0.823428 | 1.392449e-53 | -8.615850e-47 |
| Msa0882400 | Msa1272320 | 0.809029 | 2.314982e-50 | -8.615850e-47 |
| Msa0882400 | Msa1280170 | 0.822722 | 2.035073e-53 | -8.615850e-47 |
| Msa0882400 | Msa1332050 | 0.803183 | 3.936836e-49 | -8.615850e-47 |
| Msa0882400 | Msa1335230 | 0.836012 | 1.200950e-56 | -8.615850e-47 |
| Msa0882400 | Msa1352660 | 0.856725 | 2.649681e-62 | -8.615850e-47 |
| Msa0882400 | Msa1355890 | 0.833489 | 5.179419e-56 | -8.615850e-47 |
| Msa0882400 | Msa1360020 | 0.801821 | 7.513982e-49 | -8.615850e-47 |
| Msa0882400 | Msa1420270 | 0.820275 | 7.475353e-53 | -8.615850e-47 |
| Msa0882400 | Msa1421210 | 0.849852 | 2.478330e-60 | -8.615850e-47 |
| Msa0882400 | Msa1423820 | 0.815610 | 8.465578e-52 | -8.615850e-47 |
| Msa0882400 | Msa1428780 | 0.802744 | 4.851586e-49 | -8.615850e-47 |
| Msa0882400 | Msa1430130 | 0.821533 | 3.837756e-53 | -8.615850e-47 |
| Msa0882400 | Msa1460750 | 0.821921 | 3.122421e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882400 | MtrunA17_Chr6g0461981 | 95.627 | 343 | 15 | 0 | 1 | 343 | 1 | 343 | 0.0 | 678 |
| Msa0882400 | MtrunA17_Chr7g0251981 | 71.955 | 353 | 89 | 3 | 3 | 346 | 14 | 365 | 0.0 | 520 |
| Msa0882400 | MtrunA17_Chr8g0385891 | 76.589 | 299 | 66 | 1 | 39 | 337 | 53 | 347 | 1.22e-174 | 488 |
| Msa0882400 | MtrunA17_Chr5g0407451 | 49.129 | 287 | 142 | 1 | 58 | 344 | 16 | 298 | 1.99e-100 | 298 |
| Msa0882400 | MtrunA17_Chr4g0051841 | 44.138 | 290 | 160 | 1 | 57 | 344 | 23 | 312 | 9.32e-92 | 277 |
| Msa0882400 | MtrunA17_Chr6g0463351 | 26.690 | 281 | 172 | 9 | 73 | 335 | 77 | 341 | 2.57e-16 | 79.3 |
| Msa0882400 | MtrunA17_Chr8g0347451 | 25.500 | 200 | 125 | 5 | 64 | 239 | 154 | 353 | 1.33e-14 | 73.9 |
| Msa0882400 | MtrunA17_Chr8g0347451 | 27.313 | 227 | 151 | 5 | 64 | 279 | 52 | 275 | 3.67e-13 | 69.7 |
| Msa0882400 | MtrunA17_Chr5g0431531 | 26.552 | 290 | 186 | 5 | 58 | 332 | 34 | 311 | 1.54e-14 | 73.6 |
| Msa0882400 | MtrunA17_Chr5g0396801 | 25.253 | 198 | 126 | 5 | 64 | 239 | 141 | 338 | 3.07e-14 | 72.8 |
| Msa0882400 | MtrunA17_Chr5g0396801 | 28.821 | 229 | 145 | 8 | 64 | 279 | 39 | 262 | 5.82e-13 | 68.9 |
| Msa0882400 | MtrunA17_Chr8g0372531 | 26.368 | 201 | 116 | 6 | 61 | 239 | 115 | 305 | 3.34e-14 | 72.4 |
| Msa0882400 | MtrunA17_Chr8g0372531 | 26.590 | 173 | 109 | 5 | 79 | 239 | 30 | 196 | 6.84e-12 | 65.5 |
| Msa0882400 | MtrunA17_Chr8g0386871 | 25.610 | 328 | 210 | 13 | 27 | 340 | 289 | 596 | 5.69e-14 | 73.2 |
| Msa0882400 | MtrunA17_Chr1g0149111 | 26.154 | 195 | 140 | 3 | 64 | 258 | 140 | 330 | 1.22e-13 | 71.6 |
| Msa0882400 | MtrunA17_Chr1g0149111 | 31.395 | 172 | 106 | 5 | 69 | 233 | 238 | 404 | 1.81e-13 | 71.2 |
| Msa0882400 | MtrunA17_Chr8g0385571 | 28.436 | 211 | 142 | 5 | 64 | 271 | 228 | 432 | 2.32e-13 | 70.9 |
| Msa0882400 | MtrunA17_Chr8g0385571 | 26.404 | 178 | 120 | 4 | 66 | 235 | 324 | 498 | 4.18e-12 | 67.0 |
| Msa0882400 | MtrunA17_Chr3g0137941 | 29.379 | 177 | 112 | 4 | 61 | 233 | 220 | 387 | 2.77e-13 | 70.5 |
| Msa0882400 | MtrunA17_Chr3g0137941 | 24.706 | 170 | 125 | 2 | 66 | 235 | 125 | 291 | 2.78e-11 | 64.3 |
| Msa0882400 | MtrunA17_Chr7g0241521 | 26.872 | 227 | 134 | 8 | 72 | 279 | 26 | 239 | 1.26e-12 | 67.8 |
| Msa0882400 | MtrunA17_Chr4g0028531 | 23.214 | 224 | 157 | 4 | 63 | 279 | 22 | 237 | 2.26e-12 | 67.0 |
| Msa0882400 | MtrunA17_Chr2g0296061 | 26.768 | 198 | 118 | 7 | 59 | 233 | 125 | 318 | 2.26e-12 | 67.4 |
| Msa0882400 | MtrunA17_Chr2g0296061 | 22.857 | 245 | 158 | 5 | 60 | 279 | 12 | 250 | 1.47e-11 | 64.7 |
| Msa0882400 | MtrunA17_Chr4g0067231 | 22.269 | 238 | 158 | 4 | 66 | 279 | 17 | 251 | 2.62e-12 | 67.0 |
| Msa0882400 | MtrunA17_Chr4g0067231 | 23.902 | 205 | 127 | 7 | 59 | 239 | 126 | 325 | 3.83e-12 | 66.6 |
| Msa0882400 | MtrunA17_Chr4g0063561 | 25.946 | 185 | 131 | 3 | 61 | 242 | 216 | 397 | 3.92e-12 | 67.0 |
| Msa0882400 | MtrunA17_Chr4g0063561 | 24.312 | 218 | 147 | 6 | 49 | 257 | 104 | 312 | 6.88e-12 | 66.2 |
| Msa0882400 | MtrunA17_Chr3g0133111 | 25.000 | 260 | 153 | 6 | 59 | 289 | 6 | 252 | 4.14e-12 | 66.2 |
| Msa0882400 | MtrunA17_Chr7g0240341 | 26.036 | 169 | 113 | 4 | 79 | 239 | 150 | 314 | 5.89e-12 | 65.9 |
| Msa0882400 | MtrunA17_Chr7g0252401 | 25.887 | 282 | 193 | 8 | 64 | 337 | 208 | 481 | 1.94e-11 | 65.1 |
| Msa0882400 | MtrunA17_Chr4g0008061 | 27.313 | 227 | 133 | 8 | 72 | 279 | 24 | 237 | 2.34e-11 | 63.9 |
| Msa0882400 | MtrunA17_Chr7g0242311 | 24.645 | 211 | 135 | 6 | 79 | 281 | 103 | 297 | 2.42e-11 | 64.3 |
| Msa0882400 | MtrunA17_Chr7g0242311 | 24.561 | 171 | 121 | 4 | 70 | 239 | 193 | 356 | 3.33e-11 | 63.9 |
| Msa0882400 | MtrunA17_Chr1g0195101 | 27.168 | 173 | 106 | 6 | 77 | 235 | 33 | 199 | 3.88e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882400 | AT5G14040.1 | 68.392 | 367 | 98 | 2 | 3 | 352 | 6 | 371 | 0.0 | 522 |
| Msa0882400 | AT3G48850.1 | 68.079 | 354 | 100 | 3 | 2 | 346 | 5 | 354 | 0.0 | 507 |
| Msa0882400 | AT2G17270.1 | 48.161 | 299 | 151 | 2 | 52 | 350 | 11 | 305 | 9.93e-102 | 302 |
| Msa0882400 | AT5G51050.1 | 27.273 | 286 | 184 | 8 | 64 | 337 | 224 | 497 | 2.82e-17 | 83.2 |
| Msa0882400 | AT5G66380.1 | 27.232 | 224 | 126 | 9 | 49 | 249 | 99 | 308 | 2.46e-15 | 76.3 |
| Msa0882400 | AT5G66380.1 | 24.510 | 204 | 139 | 4 | 63 | 255 | 10 | 209 | 7.01e-11 | 63.2 |
| Msa0882400 | AT4G01100.2 | 25.442 | 283 | 179 | 8 | 23 | 279 | 4 | 280 | 1.41e-14 | 74.3 |
| Msa0882400 | AT4G01100.2 | 24.500 | 200 | 127 | 5 | 64 | 239 | 159 | 358 | 2.22e-12 | 67.8 |
| Msa0882400 | AT1G25380.1 | 29.730 | 185 | 114 | 6 | 73 | 245 | 131 | 311 | 2.80e-14 | 73.6 |
| Msa0882400 | AT1G25380.2 | 29.730 | 185 | 114 | 6 | 73 | 245 | 131 | 311 | 2.80e-14 | 73.6 |
| Msa0882400 | AT4G01100.1 | 25.926 | 270 | 180 | 8 | 23 | 279 | 4 | 266 | 3.37e-14 | 73.2 |
| Msa0882400 | AT4G01100.1 | 24.500 | 200 | 127 | 5 | 64 | 239 | 145 | 344 | 1.48e-12 | 68.2 |
| Msa0882400 | AT3G53940.1 | 25.581 | 172 | 116 | 4 | 76 | 239 | 193 | 360 | 4.18e-13 | 70.1 |
| Msa0882400 | AT1G07030.1 | 26.590 | 173 | 118 | 2 | 64 | 233 | 41 | 207 | 8.28e-13 | 68.9 |
| Msa0882400 | AT4G01100.3 | 24.500 | 200 | 127 | 5 | 64 | 239 | 95 | 294 | 1.08e-12 | 68.2 |
| Msa0882400 | AT4G01100.3 | 26.941 | 219 | 146 | 6 | 72 | 279 | 1 | 216 | 3.06e-12 | 67.0 |
| Msa0882400 | AT4G03115.1 | 26.160 | 237 | 152 | 8 | 67 | 299 | 46 | 263 | 1.33e-12 | 68.2 |
| Msa0882400 | AT2G30160.1 | 26.804 | 194 | 129 | 3 | 64 | 250 | 43 | 230 | 1.45e-12 | 68.2 |
| Msa0882400 | AT5G01500.1 | 27.684 | 177 | 120 | 4 | 64 | 239 | 219 | 388 | 1.90e-12 | 68.6 |
| Msa0882400 | AT4G32400.1 | 30.000 | 170 | 111 | 4 | 69 | 233 | 213 | 379 | 2.11e-12 | 68.2 |
| Msa0882400 | AT4G32400.1 | 24.590 | 244 | 172 | 5 | 64 | 307 | 115 | 346 | 2.98e-11 | 64.7 |
| Msa0882400 | AT4G03115.3 | 26.160 | 237 | 152 | 8 | 67 | 299 | 78 | 295 | 2.71e-12 | 67.4 |
| Msa0882400 | AT3G21390.2 | 26.866 | 201 | 118 | 7 | 59 | 233 | 149 | 346 | 3.52e-12 | 67.4 |
| Msa0882400 | AT3G21390.1 | 26.866 | 201 | 118 | 7 | 59 | 233 | 127 | 324 | 3.86e-12 | 67.0 |
| Msa0882400 | AT5G48970.2 | 26.263 | 198 | 122 | 5 | 59 | 233 | 61 | 257 | 8.98e-12 | 65.1 |
| Msa0882400 | AT1G79900.1 | 23.651 | 241 | 172 | 4 | 7 | 247 | 62 | 290 | 1.18e-11 | 65.1 |
| Msa0882400 | AT3G51870.1 | 22.093 | 172 | 126 | 3 | 69 | 239 | 196 | 360 | 1.28e-11 | 65.9 |
| Msa0882400 | AT3G54110.1 | 24.719 | 267 | 158 | 10 | 46 | 291 | 4 | 248 | 1.30e-11 | 65.1 |
| Msa0882400 | AT5G48970.1 | 26.263 | 198 | 122 | 5 | 59 | 233 | 132 | 328 | 1.34e-11 | 65.5 |
| Msa0882400 | AT5G48970.1 | 22.857 | 245 | 161 | 5 | 60 | 279 | 19 | 260 | 5.56e-11 | 63.5 |
| Msa0882400 | AT2G37890.1 | 26.163 | 172 | 115 | 4 | 76 | 239 | 165 | 332 | 1.40e-11 | 65.5 |
| Msa0882400 | AT4G11440.1 | 24.542 | 273 | 187 | 6 | 75 | 337 | 342 | 605 | 2.00e-11 | 65.5 |
| Msa0882400 | AT4G11440.2 | 24.542 | 273 | 187 | 6 | 75 | 337 | 342 | 605 | 2.00e-11 | 65.5 |
| Msa0882400 | AT3G20240.1 | 23.292 | 322 | 203 | 9 | 36 | 332 | 34 | 336 | 2.10e-11 | 64.7 |
| Msa0882400 | AT4G03115.4 | 26.667 | 180 | 117 | 5 | 67 | 242 | 46 | 214 | 2.62e-11 | 63.2 |
| Msa0882400 | AT4G03115.2 | 26.667 | 180 | 117 | 5 | 67 | 242 | 46 | 214 | 3.01e-11 | 63.2 |
| Msa0882400 | AT2G33820.1 | 25.847 | 236 | 157 | 7 | 79 | 300 | 34 | 265 | 3.79e-11 | 63.9 |
Find 116 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCTATTTCTTAGCTTAT+TGG | 0.140288 | 6_1:+31711140 | Msa0882400:three_prime_UTR |
| TCCTTCAGATCTGAGCAATT+TGG | 0.187636 | 6_1:-31709282 | None:intergenic |
| ACGATCCATGAAGAAATAAA+TGG | 0.235509 | 6_1:-31708196 | None:intergenic |
| GCACAAGGTGCTTTCAAATA+TGG | 0.247065 | 6_1:+31709062 | Msa0882400:CDS |
| AGAAAACAAAGAAGCCAATT+TGG | 0.255666 | 6_1:+31708084 | Msa0882400:five_prime_UTR |
| TTGTCCATTTGAGGCAATTA+AGG | 0.262012 | 6_1:+31709208 | Msa0882400:CDS |
| CAAGGGCGTTGTACCTCTTT+GGG | 0.263647 | 6_1:+31709755 | Msa0882400:CDS |
| GGAATAAGTTGGAACCAAAT+TGG | 0.264485 | 6_1:-31708098 | None:intergenic |
| TCTCCCTCTTCGAATTCTTA+TGG | 0.265900 | 6_1:+31710629 | Msa0882400:CDS |
| TCCAACTTATTCCAAGGAAT+TGG | 0.282120 | 6_1:+31708108 | Msa0882400:five_prime_UTR |
| ATTCCTTCTCCCAGTGAATC+TGG | 0.282142 | 6_1:+31708327 | Msa0882400:CDS |
| ACAAGGGCGTTGTACCTCTT+TGG | 0.286638 | 6_1:+31709754 | Msa0882400:CDS |
| CTGTGAAGAAGTTGGGATTA+TGG | 0.287366 | 6_1:+31710589 | Msa0882400:CDS |
| TGCCTATTTCTTAGCTTATT+GGG | 0.288130 | 6_1:+31711141 | Msa0882400:three_prime_UTR |
| TCTTCCCATTTATTTCTTCA+TGG | 0.289130 | 6_1:+31708191 | Msa0882400:exon |
| AAGAGCATTTCCTCAGGATT+TGG | 0.293211 | 6_1:+31708969 | Msa0882400:CDS |
| ATACAAAGAATGAATTAGTT+TGG | 0.293752 | 6_1:-31708169 | None:intergenic |
| TTCCCAATAAGCTAAGAAAT+AGG | 0.311689 | 6_1:-31711143 | None:intergenic |
| TTGAGTTATTACAGTACTTT+TGG | 0.313024 | 6_1:-31711114 | None:intergenic |
| ATCAGCAGCAGTTGCTCCTT+TGG | 0.315192 | 6_1:-31710223 | None:intergenic |
| GGATGGGCACCAACATTTCT+TGG | 0.315259 | 6_1:+31709032 | Msa0882400:CDS |
| AACTCTAACCGGAGCTCAAT+GGG | 0.324460 | 6_1:+31710656 | Msa0882400:CDS |
| CCTTCAGATCTGAGCAATTT+GGG | 0.337308 | 6_1:-31709281 | None:intergenic |
| TGTGAAGAAGTTGGGATTAT+GGG | 0.338340 | 6_1:+31710590 | Msa0882400:CDS |
| TACTATCTTGCTTGCGCCGT+TGG | 0.367277 | 6_1:+31708381 | Msa0882400:CDS |
| CCCAATTCCTTGGAATAAGT+TGG | 0.374242 | 6_1:-31708109 | None:intergenic |
| TATTCTTTCTCCCAATTCCT+TGG | 0.374570 | 6_1:-31708119 | None:intergenic |
| CACAAGGTGCTTTCAAATAT+GGG | 0.381124 | 6_1:+31709063 | Msa0882400:CDS |
| CTCAGATCTGAAGGAGTCTC+AGG | 0.382857 | 6_1:+31709290 | Msa0882400:CDS |
| CCAACTTATTCCAAGGAATT+GGG | 0.387644 | 6_1:+31708109 | Msa0882400:five_prime_UTR |
| GTGCATTCTTCCTTTGGTGT+AGG | 0.391511 | 6_1:-31710093 | None:intergenic |
| CTTATGGTTGGAACTCTAAC+CGG | 0.393210 | 6_1:+31710645 | Msa0882400:CDS |
| TTATAGATATTACTTTAGTT+AGG | 0.394269 | 6_1:+31711043 | Msa0882400:three_prime_UTR |
| GAAGCAGAAGCTGGAGCAGC+AGG | 0.403395 | 6_1:-31710853 | None:intergenic |
| CTCAAGGAACAAGGAGTTAG+AGG | 0.409377 | 6_1:+31708999 | Msa0882400:CDS |
| AAGACATTAGTCTACCTTGC+TGG | 0.423131 | 6_1:+31709149 | Msa0882400:CDS |
| TGGACCAACAACATCTGAAT+AGG | 0.423609 | 6_1:-31709108 | None:intergenic |
| TTTGCTAGAGGTCTTTCTGA+TGG | 0.431106 | 6_1:+31709254 | Msa0882400:CDS |
| CTAACCTTAATTGCCTCAAA+TGG | 0.433715 | 6_1:-31709212 | None:intergenic |
| ATTCCTTCTCCCAGATTCAC+TGG | 0.435366 | 6_1:-31708337 | None:intergenic |
| TGCATTCTTCCTTTGGTGTA+GGG | 0.436971 | 6_1:-31710092 | None:intergenic |
| CAAAGCTAAGAAGCAGAAGC+TGG | 0.438550 | 6_1:-31710862 | None:intergenic |
| CCTCTTCGAATTCTTATGGT+TGG | 0.441909 | 6_1:+31710633 | Msa0882400:CDS |
| GAAATGCTCTTGTACTTAGC+AGG | 0.446308 | 6_1:-31708957 | None:intergenic |
| TTCTTCCTTTGGTGTAGGGA+TGG | 0.448749 | 6_1:-31710088 | None:intergenic |
| TTGTTGTGGATTTACTCATA+TGG | 0.450811 | 6_1:+31708413 | Msa0882400:CDS |
| CAATGATTTCAGGTTGTACA+AGG | 0.451404 | 6_1:+31709737 | Msa0882400:intron |
| TCCTTTATCAGGCCAACCAC+TGG | 0.452524 | 6_1:+31710820 | Msa0882400:intron |
| CATACTACACTTGTCTATCA+AGG | 0.454076 | 6_1:-31711200 | None:intergenic |
| CAACACTCACACCAAGTTGT+AGG | 0.458197 | 6_1:-31710122 | None:intergenic |
| TATCTTGCTTGCGCCGTTGG+TGG | 0.461277 | 6_1:+31708384 | Msa0882400:CDS |
| TGTTGCACTTTGTCCATTTG+AGG | 0.466804 | 6_1:+31709199 | Msa0882400:CDS |
| GAACTCTAACCGGAGCTCAA+TGG | 0.482681 | 6_1:+31710655 | Msa0882400:CDS |
| CAACTTGGTGTGAGTGTTGT+CGG | 0.483390 | 6_1:+31710126 | Msa0882400:CDS |
| CCCAAATTGCTCAGATCTGA+AGG | 0.485546 | 6_1:+31709281 | Msa0882400:CDS |
| CGATCCATGAAGAAATAAAT+GGG | 0.491253 | 6_1:-31708195 | None:intergenic |
| AACACTCACACCAAGTTGTA+GGG | 0.491562 | 6_1:-31710121 | None:intergenic |
| AGAGAGCTTAAATAAACAAA+AGG | 0.492126 | 6_1:+31710968 | Msa0882400:three_prime_UTR |
| GGAGAAGGAATCATAAACTT+AGG | 0.505347 | 6_1:-31708315 | None:intergenic |
| GCAGTTGAGTAGAGGAAGCT+TGG | 0.516553 | 6_1:-31708228 | None:intergenic |
| CTCCCAGATTCACTGGGAGA+AGG | 0.522248 | 6_1:-31708330 | None:intergenic |
| TTCCTTCTCCCAGTGAATCT+GGG | 0.522764 | 6_1:+31708328 | Msa0882400:CDS |
| TTTGGTTCCAACTTATTCCA+AGG | 0.523285 | 6_1:+31708102 | Msa0882400:five_prime_UTR |
| TTGCTCCTTTGGAACTGTTG+AGG | 0.524603 | 6_1:-31710212 | None:intergenic |
| AAAGAGACAAGATTATCTGC+AGG | 0.540708 | 6_1:-31710189 | None:intergenic |
| CACAACTGCACATAATATAC+CGG | 0.540838 | 6_1:-31710160 | None:intergenic |
| TGATGCATTCAAAGTTTCTG+TGG | 0.542954 | 6_1:+31710686 | Msa0882400:CDS |
| AAGTCCTATTCAGATGTTGT+TGG | 0.545723 | 6_1:+31709104 | Msa0882400:CDS |
| ATAAATTCCCCATTGAGCTC+CGG | 0.548121 | 6_1:-31710664 | None:intergenic |
| TGCTGGATCAGCTTCTGCTG+AGG | 0.551750 | 6_1:+31709166 | Msa0882400:CDS |
| GAGATTCCGCCGCCACATGA+TGG | 0.552179 | 6_1:-31708293 | None:intergenic |
| GATGCATTCAAAGTTTCTGT+GGG | 0.552496 | 6_1:+31710687 | Msa0882400:CDS |
| CCACGTCCATCATGTGGCGG+CGG | 0.557007 | 6_1:+31708287 | Msa0882400:CDS |
| CTCCCAGTGAATCTGGGAGA+AGG | 0.560633 | 6_1:+31708334 | Msa0882400:CDS |
| TCTTTCCTCAACAGTTCCAA+AGG | 0.563971 | 6_1:+31710207 | Msa0882400:CDS |
| AAGGGCGTTGTACCTCTTTG+GGG | 0.565393 | 6_1:+31709756 | Msa0882400:CDS |
| ATGCAGGCTGTGAAGAAGTT+GGG | 0.568691 | 6_1:+31710582 | Msa0882400:intron |
| TTCCTTCTCCCAGATTCACT+GGG | 0.570507 | 6_1:-31708336 | None:intergenic |
| AAGTACAAGAGCATTTCCTC+AGG | 0.571463 | 6_1:+31708963 | Msa0882400:CDS |
| TTTATCAGGCCAACCACTGG+TGG | 0.576104 | 6_1:+31710823 | Msa0882400:intron |
| AATGCAGGCTGTGAAGAAGT+TGG | 0.576794 | 6_1:+31710581 | Msa0882400:intron |
| ATACTACACTTGTCTATCAA+GGG | 0.576878 | 6_1:-31711199 | None:intergenic |
| GTCGCCTCAGAAGAAGATCA+TGG | 0.578742 | 6_1:+31708254 | Msa0882400:CDS |
| GTTGTCGGTGGATATTTAGC+CGG | 0.581741 | 6_1:+31710141 | Msa0882400:CDS |
| GGAGCAACACCACCAGTGGT+TGG | 0.584791 | 6_1:-31710832 | None:intergenic |
| GTTAGAGTTCAAACTCAACC+TGG | 0.590024 | 6_1:+31709230 | Msa0882400:CDS |
| GCGACGAGGCAGTTGAGTAG+AGG | 0.592476 | 6_1:-31708236 | None:intergenic |
| TTACATTTGACAAGATCAAG+AGG | 0.607792 | 6_1:-31708444 | None:intergenic |
| TCTTCCATGATCTTCTTCTG+AGG | 0.607964 | 6_1:-31708258 | None:intergenic |
| TTTCTTGGTTACAGTGCACA+AGG | 0.613928 | 6_1:+31709047 | Msa0882400:CDS |
| GATAGTTTGCTTGAGAAACA+AGG | 0.614192 | 6_1:+31710932 | Msa0882400:three_prime_UTR |
| GTGAAGAAGTTGGGATTATG+GGG | 0.615409 | 6_1:+31710591 | Msa0882400:CDS |
| TCTTGTCAAATGTAACATGC+AGG | 0.616213 | 6_1:+31708452 | Msa0882400:CDS |
| GTTGGTGGAAGTATTTGTTG+TGG | 0.617067 | 6_1:+31708399 | Msa0882400:CDS |
| GGAGTGATGCTCAAGGAACA+AGG | 0.620748 | 6_1:+31708990 | Msa0882400:CDS |
| AAATGCTCTTGTACTTAGCA+GGG | 0.620905 | 6_1:-31708956 | None:intergenic |
| CAGCAGAAGCTGATCCAGCA+AGG | 0.621627 | 6_1:-31709163 | None:intergenic |
| CAACCATAAGAATTCGAAGA+GGG | 0.629648 | 6_1:-31710632 | None:intergenic |
| AGGATTTGGAGTGATGCTCA+AGG | 0.637160 | 6_1:+31708983 | Msa0882400:CDS |
| ACAACAAATACTTCCACCAA+CGG | 0.638726 | 6_1:-31708397 | None:intergenic |
| CGCCGCCACATGATGGACGT+GGG | 0.639778 | 6_1:-31708286 | None:intergenic |
| CGTTTCCCACGTCCATCATG+TGG | 0.641929 | 6_1:+31708281 | Msa0882400:CDS |
| AGCAGGAGCAACACCACCAG+TGG | 0.645069 | 6_1:-31710836 | None:intergenic |
| GCATGCCATCCCTACACCAA+AGG | 0.646638 | 6_1:+31710083 | Msa0882400:CDS |
| GGAACTTGTCTTCCCCAAAG+AGG | 0.653133 | 6_1:-31709768 | None:intergenic |
| TTCCCACGTCCATCATGTGG+CGG | 0.653553 | 6_1:+31708284 | Msa0882400:CDS |
| GATCTTCTTCTGAGGCGACG+AGG | 0.657464 | 6_1:-31708250 | None:intergenic |
| GCACTGTAACCAAGAAATGT+TGG | 0.663444 | 6_1:-31709041 | None:intergenic |
| GAAAGACCTCTAGCAAAACC+AGG | 0.669110 | 6_1:-31709248 | None:intergenic |
| GAGCATCACTCCAAATCCTG+AGG | 0.669573 | 6_1:-31708979 | None:intergenic |
| TCAGATCTGAAGGAGTCTCA+GGG | 0.672635 | 6_1:+31709291 | Msa0882400:CDS |
| AATGATTTCAGGTTGTACAA+GGG | 0.688012 | 6_1:+31709738 | Msa0882400:intron |
| ACTCTAACCGGAGCTCAATG+GGG | 0.705197 | 6_1:+31710657 | Msa0882400:CDS |
| CTTGGTGTGAGTGTTGTCGG+TGG | 0.705258 | 6_1:+31710129 | Msa0882400:CDS |
| TTATGGGGTATGTGTACACG+CGG | 0.708012 | 6_1:+31710606 | Msa0882400:CDS |
| CCAACCATAAGAATTCGAAG+AGG | 0.749924 | 6_1:-31710633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTGTTAATAATTTTGTA+TGG | + | chr6_1:31709486-31709505 | Msa0882400:intron | 15.0% |
| !!! | ATTACTAACATTTTTTATGT+AGG | - | chr6_1:31710330-31710349 | None:intergenic | 15.0% |
| !!! | TGAATTTGTTTAGATTATTA+CGG | + | chr6_1:31710781-31710800 | Msa0882400:intron | 15.0% |
| !! | TTATAGATATTACTTTAGTT+AGG | + | chr6_1:31711043-31711062 | Msa0882400:three_prime_UTR | 15.0% |
| !! | ATACAAAGAATGAATTAGTT+TGG | - | chr6_1:31708172-31708191 | None:intergenic | 20.0% |
| !!! | CATGACTTTTACATTATTTT+AGG | + | chr6_1:31708523-31708542 | Msa0882400:intron | 20.0% |
| !! | CATGCTTTATCAATTAATAT+GGG | + | chr6_1:31708892-31708911 | Msa0882400:intron | 20.0% |
| !!! | TTATATTTTGTAGCATATTC+TGG | - | chr6_1:31709131-31709150 | None:intergenic | 20.0% |
| !! | AATAACGAAAGACATAATTT+AGG | + | chr6_1:31709518-31709537 | Msa0882400:intron | 20.0% |
| !! | ATAACGAAAGACATAATTTA+GGG | + | chr6_1:31709519-31709538 | Msa0882400:intron | 20.0% |
| !!! | GTTTATGAACTTTTATACAT+TGG | + | chr6_1:31709607-31709626 | Msa0882400:intron | 20.0% |
| !! | CTAAACAAATTCAAAAAGTT+GGG | - | chr6_1:31710774-31710793 | None:intergenic | 20.0% |
| !! | TCTAAACAAATTCAAAAAGT+TGG | - | chr6_1:31710775-31710794 | None:intergenic | 20.0% |
| !!! | AAAATTGTTTTTCCTTTATC+AGG | + | chr6_1:31710809-31710828 | Msa0882400:intron | 20.0% |
| ! | TGAAAAATCTTCAATGCAAA+GGG | - | chr6_1:31708505-31708524 | None:intergenic | 25.0% |
| ! | ATGAAAAATCTTCAATGCAA+AGG | - | chr6_1:31708506-31708525 | None:intergenic | 25.0% |
| ! | GCATGCTTTATCAATTAATA+TGG | + | chr6_1:31708891-31708910 | Msa0882400:intron | 25.0% |
| ! | CTTTATCAATTAATATGGGA+CGG | + | chr6_1:31708896-31708915 | Msa0882400:intron | 25.0% |
| !!! | TACTACTTCAGTAGATTTTT+TGG | + | chr6_1:31709334-31709353 | Msa0882400:intron | 25.0% |
| ! | ATCAAAATGCCAAAATTGTT+AGG | - | chr6_1:31709445-31709464 | None:intergenic | 25.0% |
| ! | ATGTCTTTCGTTATTCAATT+TGG | - | chr6_1:31709513-31709532 | None:intergenic | 25.0% |
| !!! | TTGTTGGTAATTTTGATACT+CGG | - | chr6_1:31709570-31709589 | None:intergenic | 25.0% |
| !! | TACATAAATGTGTCTTTTGT+TGG | - | chr6_1:31709586-31709605 | None:intergenic | 25.0% |
| !! | ACATGTACAATTTTAAGCAA+TGG | - | chr6_1:31709676-31709695 | None:intergenic | 25.0% |
| ! | ATCATTGTACATTTCATCAA+AGG | - | chr6_1:31709724-31709743 | None:intergenic | 25.0% |
| ! | ATGAAATGTACAATGATTTC+AGG | + | chr6_1:31709727-31709746 | Msa0882400:intron | 25.0% |
| ! | TTAGTTTATTGTTCACATAG+TGG | - | chr6_1:31709982-31710001 | None:intergenic | 25.0% |
| ! | CTGCAACAAAAAAACATTAT+AGG | - | chr6_1:31710011-31710030 | None:intergenic | 25.0% |
| ! | TTAGGGACTAAAATAAGAAA+GGG | - | chr6_1:31710273-31710292 | None:intergenic | 25.0% |
| ! | TTTAGGGACTAAAATAAGAA+AGG | - | chr6_1:31710274-31710293 | None:intergenic | 25.0% |
| ! | GTTATATATCTAAGAAAGAG+CGG | - | chr6_1:31710300-31710319 | None:intergenic | 25.0% |
| ! | GTCAATAACAATGATGAAAT+AGG | - | chr6_1:31710551-31710570 | None:intergenic | 25.0% |
| !!! | TCTAGTTCTGATATATTGAT+TGG | + | chr6_1:31710743-31710762 | Msa0882400:intron | 25.0% |
| !! | TATTTAAGCTCTCTTTTACT+TGG | - | chr6_1:31710962-31710981 | None:intergenic | 25.0% |
| ! | AGAGAGCTTAAATAAACAAA+AGG | + | chr6_1:31710968-31710987 | Msa0882400:three_prime_UTR | 25.0% |
| !! | TAAAAAATTCGCATTAGCTT+TGG | - | chr6_1:31710998-31711017 | None:intergenic | 25.0% |
| !! | TTGAGTTATTACAGTACTTT+TGG | - | chr6_1:31711117-31711136 | None:intergenic | 25.0% |
| AGAAAACAAAGAAGCCAATT+TGG | + | chr6_1:31708084-31708103 | Msa0882400:five_prime_UTR | 30.0% | |
| ! | TCTTCCCATTTATTTCTTCA+TGG | + | chr6_1:31708191-31708210 | Msa0882400:exon | 30.0% |
| CGATCCATGAAGAAATAAAT+GGG | - | chr6_1:31708198-31708217 | None:intergenic | 30.0% | |
| ACGATCCATGAAGAAATAAA+TGG | - | chr6_1:31708199-31708218 | None:intergenic | 30.0% | |
| TTGTTGTGGATTTACTCATA+TGG | + | chr6_1:31708413-31708432 | Msa0882400:CDS | 30.0% | |
| TTACATTTGACAAGATCAAG+AGG | - | chr6_1:31708447-31708466 | None:intergenic | 30.0% | |
| !!! | TTTTTGGTTGATAGACGAAA+TGG | + | chr6_1:31709350-31709369 | Msa0882400:intron | 30.0% |
| TGTTGCTCATTCTAGATATT+AGG | + | chr6_1:31709693-31709712 | Msa0882400:intron | 30.0% | |
| !! | AATGATTTCAGGTTGTACAA+GGG | + | chr6_1:31709738-31709757 | Msa0882400:intron | 30.0% |
| AATAAGTGTGGAAACTTACA+TGG | - | chr6_1:31709792-31709811 | None:intergenic | 30.0% | |
| CTGCTAAGTATAAATAAGTG+TGG | - | chr6_1:31709804-31709823 | None:intergenic | 30.0% | |
| TTTATAGAATTGGATCGAAC+TGG | - | chr6_1:31709908-31709927 | None:intergenic | 30.0% | |
| ! | AGTCTTGTCAAACAAGAAAA+GGG | + | chr6_1:31710393-31710412 | Msa0882400:intron | 30.0% |
| CATAGATTCCACTTTCAATT+CGG | - | chr6_1:31710424-31710443 | None:intergenic | 30.0% | |
| ! | TACTGATTATCTTATACTCG+AGG | + | chr6_1:31710525-31710544 | Msa0882400:intron | 30.0% |
| TTGACTATACTTTGTAATGC+AGG | + | chr6_1:31710566-31710585 | Msa0882400:intron | 30.0% | |
| ! | TTGCCTATTTCTTAGCTTAT+TGG | + | chr6_1:31711140-31711159 | Msa0882400:three_prime_UTR | 30.0% |
| ! | TGCCTATTTCTTAGCTTATT+GGG | + | chr6_1:31711141-31711160 | Msa0882400:three_prime_UTR | 30.0% |
| TTCCCAATAAGCTAAGAAAT+AGG | - | chr6_1:31711146-31711165 | None:intergenic | 30.0% | |
| ATACTACACTTGTCTATCAA+GGG | - | chr6_1:31711202-31711221 | None:intergenic | 30.0% | |
| ! | GGAATAAGTTGGAACCAAAT+TGG | - | chr6_1:31708101-31708120 | None:intergenic | 35.0% |
| ! | TTTGGTTCCAACTTATTCCA+AGG | + | chr6_1:31708102-31708121 | Msa0882400:five_prime_UTR | 35.0% |
| TCCAACTTATTCCAAGGAAT+TGG | + | chr6_1:31708108-31708127 | Msa0882400:five_prime_UTR | 35.0% | |
| CCAACTTATTCCAAGGAATT+GGG | + | chr6_1:31708109-31708128 | Msa0882400:five_prime_UTR | 35.0% | |
| TATTCTTTCTCCCAATTCCT+TGG | - | chr6_1:31708122-31708141 | None:intergenic | 35.0% | |
| GGAGAAGGAATCATAAACTT+AGG | - | chr6_1:31708318-31708337 | None:intergenic | 35.0% | |
| ACAACAAATACTTCCACCAA+CGG | - | chr6_1:31708400-31708419 | None:intergenic | 35.0% | |
| TCTTGTCAAATGTAACATGC+AGG | + | chr6_1:31708452-31708471 | Msa0882400:CDS | 35.0% | |
| TATCAATTAATATGGGACGG+AGG | + | chr6_1:31708899-31708918 | Msa0882400:intron | 35.0% | |
| ATCAATTAATATGGGACGGA+GGG | + | chr6_1:31708900-31708919 | Msa0882400:intron | 35.0% | |
| AAATGCTCTTGTACTTAGCA+GGG | - | chr6_1:31708959-31708978 | None:intergenic | 35.0% | |
| !! | TTAGAGGATTTTTCAGAGGA+TGG | + | chr6_1:31709015-31709034 | Msa0882400:CDS | 35.0% |
| !! | TAGAGGATTTTTCAGAGGAT+GGG | + | chr6_1:31709016-31709035 | Msa0882400:CDS | 35.0% |
| ! | CACAAGGTGCTTTCAAATAT+GGG | + | chr6_1:31709063-31709082 | Msa0882400:CDS | 35.0% |
| AAGTCCTATTCAGATGTTGT+TGG | + | chr6_1:31709104-31709123 | Msa0882400:CDS | 35.0% | |
| ! | TTGTCCATTTGAGGCAATTA+AGG | + | chr6_1:31709208-31709227 | Msa0882400:CDS | 35.0% |
| CTAACCTTAATTGCCTCAAA+TGG | - | chr6_1:31709215-31709234 | None:intergenic | 35.0% | |
| !! | CAATGATTTCAGGTTGTACA+AGG | + | chr6_1:31709737-31709756 | Msa0882400:intron | 35.0% |
| !! | TTAATCAGGTTCGTTTTAGC+AGG | - | chr6_1:31709868-31709887 | None:intergenic | 35.0% |
| ! | AAACCACAGTTTGCTTAATC+AGG | - | chr6_1:31709882-31709901 | None:intergenic | 35.0% |
| !!! | GGTTGTCGGTTTTATAGAAT+TGG | - | chr6_1:31709918-31709937 | None:intergenic | 35.0% |
| CTATAAAACCGACAACCAAT+CGG | + | chr6_1:31709921-31709940 | Msa0882400:intron | 35.0% | |
| ! | GTTTTTGTGCATTCTTCCTT+TGG | - | chr6_1:31710102-31710121 | None:intergenic | 35.0% |
| CACAACTGCACATAATATAC+CGG | - | chr6_1:31710163-31710182 | None:intergenic | 35.0% | |
| AAAGAGACAAGATTATCTGC+AGG | - | chr6_1:31710192-31710211 | None:intergenic | 35.0% | |
| TAAGAAAGAGCGGTAGTTTA+GGG | - | chr6_1:31710290-31710309 | None:intergenic | 35.0% | |
| ! | CAGTCTTGTCAAACAAGAAA+AGG | + | chr6_1:31710392-31710411 | Msa0882400:intron | 35.0% |
| TGTGAAGAAGTTGGGATTAT+GGG | + | chr6_1:31710590-31710609 | Msa0882400:CDS | 35.0% | |
| CAACCATAAGAATTCGAAGA+GGG | - | chr6_1:31710635-31710654 | None:intergenic | 35.0% | |
| TGATGCATTCAAAGTTTCTG+TGG | + | chr6_1:31710686-31710705 | Msa0882400:CDS | 35.0% | |
| GATGCATTCAAAGTTTCTGT+GGG | + | chr6_1:31710687-31710706 | Msa0882400:CDS | 35.0% | |
| !! | GATAGTTTGCTTGAGAAACA+AGG | + | chr6_1:31710932-31710951 | Msa0882400:three_prime_UTR | 35.0% |
| CATACTACACTTGTCTATCA+AGG | - | chr6_1:31711203-31711222 | None:intergenic | 35.0% | |
| CCCAATTCCTTGGAATAAGT+TGG | - | chr6_1:31708112-31708131 | None:intergenic | 40.0% | |
| TCTTCCATGATCTTCTTCTG+AGG | - | chr6_1:31708261-31708280 | None:intergenic | 40.0% | |
| !! | GTTGGTGGAAGTATTTGTTG+TGG | + | chr6_1:31708399-31708418 | Msa0882400:CDS | 40.0% |
| GTCAAATGTAACATGCAGGT+TGG | + | chr6_1:31708456-31708475 | Msa0882400:intron | 40.0% | |
| GAAATGCTCTTGTACTTAGC+AGG | - | chr6_1:31708960-31708979 | None:intergenic | 40.0% | |
| !! | AAGTACAAGAGCATTTCCTC+AGG | + | chr6_1:31708963-31708982 | Msa0882400:CDS | 40.0% |
| !! | AAGAGCATTTCCTCAGGATT+TGG | + | chr6_1:31708969-31708988 | Msa0882400:CDS | 40.0% |
| !! | GGAGTTAGAGGATTTTTCAG+AGG | + | chr6_1:31709011-31709030 | Msa0882400:CDS | 40.0% |
| GCACTGTAACCAAGAAATGT+TGG | - | chr6_1:31709044-31709063 | None:intergenic | 40.0% | |
| TTTCTTGGTTACAGTGCACA+AGG | + | chr6_1:31709047-31709066 | Msa0882400:CDS | 40.0% | |
| ! | GCACAAGGTGCTTTCAAATA+TGG | + | chr6_1:31709062-31709081 | Msa0882400:CDS | 40.0% |
| TGGACCAACAACATCTGAAT+AGG | - | chr6_1:31709111-31709130 | None:intergenic | 40.0% | |
| ! | AAGACATTAGTCTACCTTGC+TGG | + | chr6_1:31709149-31709168 | Msa0882400:CDS | 40.0% |
| TGTTGCACTTTGTCCATTTG+AGG | + | chr6_1:31709199-31709218 | Msa0882400:CDS | 40.0% | |
| GTTAGAGTTCAAACTCAACC+TGG | + | chr6_1:31709230-31709249 | Msa0882400:CDS | 40.0% | |
| TTTGCTAGAGGTCTTTCTGA+TGG | + | chr6_1:31709254-31709273 | Msa0882400:CDS | 40.0% | |
| CCTTCAGATCTGAGCAATTT+GGG | - | chr6_1:31709284-31709303 | None:intergenic | 40.0% | |
| TCCTTCAGATCTGAGCAATT+TGG | - | chr6_1:31709285-31709304 | None:intergenic | 40.0% | |
| AAACTCACACACACAAGTAG+AGG | + | chr6_1:31709386-31709405 | Msa0882400:intron | 40.0% | |
| ACACACACAAGTAGAGGAAT+CGG | + | chr6_1:31709392-31709411 | Msa0882400:intron | 40.0% | |
| ! | AGCGTTTGGCCTAACAATTT+TGG | + | chr6_1:31709433-31709452 | Msa0882400:intron | 40.0% |
| !! | GCATTTTGATCAGTTGAGCT+AGG | + | chr6_1:31709455-31709474 | Msa0882400:intron | 40.0% |
| GAACCTGATTAAGCAAACTG+TGG | + | chr6_1:31709876-31709895 | Msa0882400:intron | 40.0% | |
| ! | TGCATTCTTCCTTTGGTGTA+GGG | - | chr6_1:31710095-31710114 | None:intergenic | 40.0% |
| TGCACAAAAACCCTACAACT+TGG | + | chr6_1:31710111-31710130 | Msa0882400:CDS | 40.0% | |
| AACACTCACACCAAGTTGTA+GGG | - | chr6_1:31710124-31710143 | None:intergenic | 40.0% | |
| TCTTTCCTCAACAGTTCCAA+AGG | + | chr6_1:31710207-31710226 | Msa0882400:CDS | 40.0% | |
| GGGACTAAAATAAGAAAGGG+CGG | - | chr6_1:31710270-31710289 | None:intergenic | 40.0% | |
| CTAAGAAAGAGCGGTAGTTT+AGG | - | chr6_1:31710291-31710310 | None:intergenic | 40.0% | |
| TTGAGCGTACTCTCGATTAT+TGG | + | chr6_1:31710356-31710375 | Msa0882400:intron | 40.0% | |
| CTGTGAAGAAGTTGGGATTA+TGG | + | chr6_1:31710589-31710608 | Msa0882400:CDS | 40.0% | |
| GTGAAGAAGTTGGGATTATG+GGG | + | chr6_1:31710591-31710610 | Msa0882400:CDS | 40.0% | |
| TCTCCCTCTTCGAATTCTTA+TGG | + | chr6_1:31710629-31710648 | Msa0882400:CDS | 40.0% | |
| CCAACCATAAGAATTCGAAG+AGG | - | chr6_1:31710636-31710655 | None:intergenic | 40.0% | |
| CCTCTTCGAATTCTTATGGT+TGG | + | chr6_1:31710633-31710652 | Msa0882400:CDS | 40.0% | |
| CTTATGGTTGGAACTCTAAC+CGG | + | chr6_1:31710645-31710664 | Msa0882400:CDS | 40.0% | |
| ATAAATTCCCCATTGAGCTC+CGG | - | chr6_1:31710667-31710686 | None:intergenic | 40.0% | |
| CTATCTATCTTGCTTCTGCA+CGG | - | chr6_1:31710905-31710924 | None:intergenic | 40.0% | |
| ATTCCTTCTCCCAGTGAATC+TGG | + | chr6_1:31708327-31708346 | Msa0882400:CDS | 45.0% | |
| TTCCTTCTCCCAGTGAATCT+GGG | + | chr6_1:31708328-31708347 | Msa0882400:CDS | 45.0% | |
| TTCCTTCTCCCAGATTCACT+GGG | - | chr6_1:31708339-31708358 | None:intergenic | 45.0% | |
| ATTCCTTCTCCCAGATTCAC+TGG | - | chr6_1:31708340-31708359 | None:intergenic | 45.0% | |
| ! | AGGATTTGGAGTGATGCTCA+AGG | + | chr6_1:31708983-31709002 | Msa0882400:CDS | 45.0% |
| CTCAAGGAACAAGGAGTTAG+AGG | + | chr6_1:31708999-31709018 | Msa0882400:CDS | 45.0% | |
| !!! | ACTCAACCTGGTTTTGCTAG+AGG | + | chr6_1:31709242-31709261 | Msa0882400:CDS | 45.0% |
| GAAAGACCTCTAGCAAAACC+AGG | - | chr6_1:31709251-31709270 | None:intergenic | 45.0% | |
| CCCAAATTGCTCAGATCTGA+AGG | + | chr6_1:31709281-31709300 | Msa0882400:CDS | 45.0% | |
| TCAGATCTGAAGGAGTCTCA+GGG | + | chr6_1:31709291-31709310 | Msa0882400:CDS | 45.0% | |
| CACACACAAGTAGAGGAATC+GGG | + | chr6_1:31709393-31709412 | Msa0882400:intron | 45.0% | |
| ACACACAAGTAGAGGAATCG+GGG | + | chr6_1:31709394-31709413 | Msa0882400:intron | 45.0% | |
| GGCTCGTTCAACCAATTGAA+CGG | + | chr6_1:31709950-31709969 | Msa0882400:intron | 45.0% | |
| AGTGGAACAGTCCGTTCAAT+TGG | - | chr6_1:31709964-31709983 | None:intergenic | 45.0% | |
| ! | TTCTTCCTTTGGTGTAGGGA+TGG | - | chr6_1:31710091-31710110 | None:intergenic | 45.0% |
| ! | GTGCATTCTTCCTTTGGTGT+AGG | - | chr6_1:31710096-31710115 | None:intergenic | 45.0% |
| CAACACTCACACCAAGTTGT+AGG | - | chr6_1:31710125-31710144 | None:intergenic | 45.0% | |
| !! | CAACTTGGTGTGAGTGTTGT+CGG | + | chr6_1:31710126-31710145 | Msa0882400:CDS | 45.0% |
| GTTGTCGGTGGATATTTAGC+CGG | + | chr6_1:31710141-31710160 | Msa0882400:CDS | 45.0% | |
| !! | TTGCTCCTTTGGAACTGTTG+AGG | - | chr6_1:31710215-31710234 | None:intergenic | 45.0% |
| CTTGTTTGACAAGACTGACG+TGG | - | chr6_1:31710389-31710408 | None:intergenic | 45.0% | |
| AATGCAGGCTGTGAAGAAGT+TGG | + | chr6_1:31710581-31710600 | Msa0882400:intron | 45.0% | |
| ATGCAGGCTGTGAAGAAGTT+GGG | + | chr6_1:31710582-31710601 | Msa0882400:intron | 45.0% | |
| TTATGGGGTATGTGTACACG+CGG | + | chr6_1:31710606-31710625 | Msa0882400:CDS | 45.0% | |
| AACTCTAACCGGAGCTCAAT+GGG | + | chr6_1:31710656-31710675 | Msa0882400:CDS | 45.0% | |
| CAAAGCTAAGAAGCAGAAGC+TGG | - | chr6_1:31710865-31710884 | None:intergenic | 45.0% | |
| GCAGTTGAGTAGAGGAAGCT+TGG | - | chr6_1:31708231-31708250 | None:intergenic | 50.0% | |
| GTCGCCTCAGAAGAAGATCA+TGG | + | chr6_1:31708254-31708273 | Msa0882400:CDS | 50.0% | |
| TACTATCTTGCTTGCGCCGT+TGG | + | chr6_1:31708381-31708400 | Msa0882400:CDS | 50.0% | |
| GAGCATCACTCCAAATCCTG+AGG | - | chr6_1:31708982-31709001 | None:intergenic | 50.0% | |
| GGAGTGATGCTCAAGGAACA+AGG | + | chr6_1:31708990-31709009 | Msa0882400:CDS | 50.0% | |
| GGATGGGCACCAACATTTCT+TGG | + | chr6_1:31709032-31709051 | Msa0882400:CDS | 50.0% | |
| CTCAGATCTGAAGGAGTCTC+AGG | + | chr6_1:31709290-31709309 | Msa0882400:CDS | 50.0% | |
| GACGAAATGGCAAGAGCTGT+TGG | + | chr6_1:31709363-31709382 | Msa0882400:intron | 50.0% | |
| TTAGGCCAAACGCTGTGATC+GGG | - | chr6_1:31709427-31709446 | None:intergenic | 50.0% | |
| GTTAGGCCAAACGCTGTGAT+CGG | - | chr6_1:31709428-31709447 | None:intergenic | 50.0% | |
| !! | ACAAGGGCGTTGTACCTCTT+TGG | + | chr6_1:31709754-31709773 | Msa0882400:CDS | 50.0% |
| !! | CAAGGGCGTTGTACCTCTTT+GGG | + | chr6_1:31709755-31709774 | Msa0882400:CDS | 50.0% |
| !! | AAGGGCGTTGTACCTCTTTG+GGG | + | chr6_1:31709756-31709775 | Msa0882400:CDS | 50.0% |
| GGAACTTGTCTTCCCCAAAG+AGG | - | chr6_1:31709771-31709790 | None:intergenic | 50.0% | |
| ATCAGCAGCAGTTGCTCCTT+TGG | - | chr6_1:31710226-31710245 | None:intergenic | 50.0% | |
| GGGTCTCACCGAATTGAAAG+TGG | + | chr6_1:31710413-31710432 | Msa0882400:intron | 50.0% | |
| GAACTCTAACCGGAGCTCAA+TGG | + | chr6_1:31710655-31710674 | Msa0882400:CDS | 50.0% | |
| ACTCTAACCGGAGCTCAATG+GGG | + | chr6_1:31710657-31710676 | Msa0882400:CDS | 50.0% | |
| TCCTTTATCAGGCCAACCAC+TGG | + | chr6_1:31710820-31710839 | Msa0882400:intron | 50.0% | |
| !! | ACCAGTGGTTGGCCTGATAA+AGG | - | chr6_1:31710824-31710843 | None:intergenic | 50.0% |
| TTTATCAGGCCAACCACTGG+TGG | + | chr6_1:31710823-31710842 | Msa0882400:intron | 50.0% | |
| !! | GATCTTCTTCTGAGGCGACG+AGG | - | chr6_1:31708253-31708272 | None:intergenic | 55.0% |
| CGTTTCCCACGTCCATCATG+TGG | + | chr6_1:31708281-31708300 | Msa0882400:CDS | 55.0% | |
| TTCCCACGTCCATCATGTGG+CGG | + | chr6_1:31708284-31708303 | Msa0882400:CDS | 55.0% | |
| CTCCCAGATTCACTGGGAGA+AGG | - | chr6_1:31708333-31708352 | None:intergenic | 55.0% | |
| CTCCCAGTGAATCTGGGAGA+AGG | + | chr6_1:31708334-31708353 | Msa0882400:CDS | 55.0% | |
| TATCTTGCTTGCGCCGTTGG+TGG | + | chr6_1:31708384-31708403 | Msa0882400:CDS | 55.0% | |
| CAGCAGAAGCTGATCCAGCA+AGG | - | chr6_1:31709166-31709185 | None:intergenic | 55.0% | |
| TGCTGGATCAGCTTCTGCTG+AGG | + | chr6_1:31709166-31709185 | Msa0882400:CDS | 55.0% | |
| CAAACCCCGATCACAGCGTT+TGG | + | chr6_1:31709419-31709438 | Msa0882400:intron | 55.0% | |
| TAGGCCAAACGCTGTGATCG+GGG | - | chr6_1:31709426-31709445 | None:intergenic | 55.0% | |
| ! | CCAGTCTGCCGATTGGTTGT+CGG | - | chr6_1:31709932-31709951 | None:intergenic | 55.0% |
| GCATGCCATCCCTACACCAA+AGG | + | chr6_1:31710083-31710102 | Msa0882400:CDS | 55.0% | |
| ! | CTTGGTGTGAGTGTTGTCGG+TGG | + | chr6_1:31710129-31710148 | Msa0882400:CDS | 55.0% |
| GCGACGAGGCAGTTGAGTAG+AGG | - | chr6_1:31708239-31708258 | None:intergenic | 60.0% | |
| GAGATTCCGCCGCCACATGA+TGG | - | chr6_1:31708296-31708315 | None:intergenic | 60.0% | |
| CCGACAACCAATCGGCAGAC+TGG | + | chr6_1:31709929-31709948 | Msa0882400:intron | 60.0% | |
| GAACGAGCCAGTCTGCCGAT+TGG | - | chr6_1:31709939-31709958 | None:intergenic | 60.0% | |
| GGAGCAACACCACCAGTGGT+TGG | - | chr6_1:31710835-31710854 | None:intergenic | 60.0% | |
| AGCAGGAGCAACACCACCAG+TGG | - | chr6_1:31710839-31710858 | None:intergenic | 60.0% | |
| GAAGCAGAAGCTGGAGCAGC+AGG | - | chr6_1:31710856-31710875 | None:intergenic | 60.0% | |
| !! | CGCCGCCACATGATGGACGT+GGG | - | chr6_1:31708289-31708308 | None:intergenic | 65.0% |
| CCACGTCCATCATGTGGCGG+CGG | + | chr6_1:31708287-31708306 | Msa0882400:CDS | 65.0% | |
| !! | CCGCCGCCACATGATGGACG+TGG | - | chr6_1:31708290-31708309 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 31708084 | 31711243 | 31708084 | ID=Msa0882400;Name=Msa0882400 |
| chr6_1 | mRNA | 31708084 | 31711243 | 31708084 | ID=Msa0882400-mRNA-1;Parent=Msa0882400;Name=Msa0882400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=126|1|1|1|0.83|0.71|7|339|352 |
| chr6_1 | exon | 31708084 | 31708473 | 31708084 | ID=Msa0882400-mRNA-1:exon:7832;Parent=Msa0882400-mRNA-1 |
| chr6_1 | exon | 31708951 | 31709312 | 31708951 | ID=Msa0882400-mRNA-1:exon:7833;Parent=Msa0882400-mRNA-1 |
| chr6_1 | exon | 31709749 | 31709792 | 31709749 | ID=Msa0882400-mRNA-1:exon:7834;Parent=Msa0882400-mRNA-1 |
| chr6_1 | exon | 31710031 | 31710245 | 31710031 | ID=Msa0882400-mRNA-1:exon:7835;Parent=Msa0882400-mRNA-1 |
| chr6_1 | exon | 31710588 | 31710712 | 31710588 | ID=Msa0882400-mRNA-1:exon:7836;Parent=Msa0882400-mRNA-1 |
| chr6_1 | exon | 31710831 | 31710884 | 31710831 | ID=Msa0882400-mRNA-1:exon:7837;Parent=Msa0882400-mRNA-1 |
| chr6_1 | exon | 31710910 | 31711243 | 31710910 | ID=Msa0882400-mRNA-1:exon:7838;Parent=Msa0882400-mRNA-1 |
| chr6_1 | five_prime_UTR | 31708084 | 31708209 | 31708084 | ID=Msa0882400-mRNA-1:five_prime_utr;Parent=Msa0882400-mRNA-1 |
| chr6_1 | CDS | 31708210 | 31708473 | 31708210 | ID=Msa0882400-mRNA-1:cds;Parent=Msa0882400-mRNA-1 |
| chr6_1 | CDS | 31708951 | 31709312 | 31708951 | ID=Msa0882400-mRNA-1:cds;Parent=Msa0882400-mRNA-1 |
| chr6_1 | CDS | 31709749 | 31709792 | 31709749 | ID=Msa0882400-mRNA-1:cds;Parent=Msa0882400-mRNA-1 |
| chr6_1 | CDS | 31710031 | 31710245 | 31710031 | ID=Msa0882400-mRNA-1:cds;Parent=Msa0882400-mRNA-1 |
| chr6_1 | CDS | 31710588 | 31710712 | 31710588 | ID=Msa0882400-mRNA-1:cds;Parent=Msa0882400-mRNA-1 |
| chr6_1 | CDS | 31710831 | 31710879 | 31710831 | ID=Msa0882400-mRNA-1:cds;Parent=Msa0882400-mRNA-1 |
| chr6_1 | three_prime_UTR | 31710880 | 31710884 | 31710880 | ID=Msa0882400-mRNA-1:three_prime_utr;Parent=Msa0882400-mRNA-1 |
| chr6_1 | three_prime_UTR | 31710910 | 31711243 | 31710910 | ID=Msa0882400-mRNA-1:three_prime_utr;Parent=Msa0882400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
