AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037320 MtrunA17_Chr1g0201021 98.249 571 10 0 1 571 1 571 0.0 1178
Msa0037320 MtrunA17_Chr3g0130101 52.261 199 90 1 13 211 1 194 7.73e-69 226
Msa0037320 MtrunA17_Chr8g0364791 56.000 175 77 0 20 194 7 181 5.42e-67 224
Msa0037320 MtrunA17_Chr8g0384201 54.857 175 79 0 20 194 7 181 2.46e-65 221
Msa0037320 MtrunA17_Chr6g0481091 59.006 161 66 0 21 181 8 168 8.88e-61 201
Msa0037320 MtrunA17_Chr5g0433781 61.728 162 61 1 21 181 8 169 9.99e-61 212
Msa0037320 MtrunA17_Chr3g0092671 46.154 247 119 5 21 254 7 252 1.53e-59 207
Msa0037320 MtrunA17_Chr3g0109821 60.494 162 62 2 21 180 8 169 4.08e-59 208
Msa0037320 MtrunA17_Chr2g0309891 58.065 155 64 1 17 170 4 158 4.92e-58 197
Msa0037320 MtrunA17_Chr1g0197361 55.882 170 73 2 21 189 10 178 5.45e-58 204
Msa0037320 MtrunA17_Chr1g0197351 56.111 180 72 2 18 191 41 219 2.10e-57 199
Msa0037320 MtrunA17_Chr5g0400461 56.410 156 58 2 21 169 8 160 6.44e-53 183
Msa0037320 MtrunA17_Chr4g0054791 55.696 158 67 1 15 169 2 159 1.28e-52 182
Msa0037320 MtrunA17_Chr3g0128111 51.534 163 75 1 8 170 35 193 4.30e-52 178
Msa0037320 MtrunA17_Chr3g0128151 52.601 173 79 2 1 170 1 173 1.57e-50 183
Msa0037320 MtrunA17_Chr5g0428991 49.714 175 82 1 1 169 1 175 5.47e-48 177
Msa0037320 MtrunA17_Chr4g0018391 49.333 150 73 2 21 169 9 156 2.96e-47 168
Msa0037320 MtrunA17_Chr2g0309331 47.682 151 75 3 21 169 12 160 7.74e-46 164
Msa0037320 MtrunA17_Chr5g0405211 52.672 131 61 1 21 150 10 140 9.98e-46 164
Msa0037320 MtrunA17_Chr6g0461661 42.718 206 105 7 22 221 21 219 1.34e-45 165
Msa0037320 MtrunA17_Chr4g0060931 47.853 163 81 2 15 175 13 173 2.17e-45 164
Msa0037320 MtrunA17_Chr4g0056541 46.067 178 85 6 21 194 9 179 3.02e-45 164
Msa0037320 MtrunA17_Chr2g0316971 51.266 158 69 4 21 173 25 179 3.03e-45 164
Msa0037320 MtrunA17_Chr8g0372121 47.333 150 76 2 21 169 8 155 4.70e-45 161
Msa0037320 MtrunA17_Chr4g0017921 49.333 150 72 2 21 169 10 156 1.02e-44 162
Msa0037320 MtrunA17_Chr3g0091921 49.045 157 76 2 21 175 18 172 1.04e-44 160
Msa0037320 MtrunA17_Chr5g0417791 47.134 157 77 2 17 169 1 155 1.43e-44 159
Msa0037320 MtrunA17_Chr6g0453131 50.000 162 67 5 20 170 16 174 1.60e-44 162
Msa0037320 MtrunA17_Chr5g0398971 47.682 151 76 3 21 169 9 158 1.73e-44 161
Msa0037320 MtrunA17_Chr2g0318081 45.283 159 85 1 17 175 14 170 2.03e-44 161
Msa0037320 MtrunA17_Chr8g0361731 47.024 168 72 5 15 170 12 174 2.75e-44 162
Msa0037320 MtrunA17_Chr1g0200561 48.750 160 75 3 21 177 21 176 3.37e-44 160
Msa0037320 MtrunA17_Chr4g0042561 46.497 157 78 2 21 173 11 165 5.16e-44 157
Msa0037320 MtrunA17_Chr4g0076731 50.327 153 71 3 20 171 55 203 5.60e-44 162
Msa0037320 MtrunA17_Chr7g0252971 46.012 163 73 4 21 170 10 170 9.34e-44 159
Msa0037320 MtrunA17_Chr6g0453451 49.367 158 74 4 21 175 22 176 1.33e-43 158
Msa0037320 MtrunA17_Chr3g0139331 50.955 157 71 3 21 175 13 165 1.46e-43 158
Msa0037320 MtrunA17_Chr5g0417001 45.963 161 75 3 20 170 15 173 1.48e-43 159
Msa0037320 MtrunA17_Chr3g0124761 49.351 154 72 3 21 171 9 159 1.80e-43 156
Msa0037320 MtrunA17_Chr2g0318101 48.980 147 71 2 6 150 2 146 4.71e-43 157
Msa0037320 MtrunA17_Chr6g0484441 48.667 150 73 2 21 170 7 152 5.33e-43 156
Msa0037320 MtrunA17_Chr7g0253011 47.771 157 72 4 21 170 19 172 1.14e-42 157
Msa0037320 MtrunA17_Chr8g0384721 41.414 198 109 4 21 214 9 203 1.72e-42 154
Msa0037320 MtrunA17_Chr4g0038751 48.387 155 70 4 19 170 15 162 1.76e-42 154
Msa0037320 MtrunA17_Chr4g0047841 53.030 132 58 2 21 150 17 146 1.79e-42 155
Msa0037320 MtrunA17_Chr8g0346001 49.231 130 65 1 21 149 17 146 2.36e-42 157
Msa0037320 MtrunA17_Chr8g0359921 46.795 156 79 3 17 170 12 165 3.76e-42 154
Msa0037320 MtrunA17_Chr3g0130731 48.701 154 73 3 21 171 9 159 4.15e-42 153
Msa0037320 MtrunA17_Chr2g0326361 49.635 137 65 2 21 155 16 150 1.55e-41 152
Msa0037320 MtrunA17_Chr1g0147421 50.314 159 70 5 21 175 29 182 2.75e-41 152
Msa0037320 MtrunA17_Chr7g0214071 48.171 164 70 5 21 179 17 170 7.85e-41 148
Msa0037320 MtrunA17_Chr7g0263931 43.312 157 81 3 21 171 13 167 1.22e-39 147
Msa0037320 MtrunA17_Chr3g0144271 53.425 146 58 6 21 159 25 167 2.15e-39 149
Msa0037320 MtrunA17_Chr7g0217721 51.538 130 61 1 22 151 22 149 3.52e-39 146
Msa0037320 MtrunA17_Chr7g0217711 51.587 126 59 1 22 147 22 145 4.46e-39 141
Msa0037320 MtrunA17_Chr2g0311651 42.169 166 80 4 20 170 23 187 5.16e-38 142
Msa0037320 MtrunA17_Chr5g0442771 44.444 162 76 4 20 169 19 178 2.36e-37 140
Msa0037320 MtrunA17_Chr2g0311661 48.855 131 62 2 20 146 22 151 2.99e-37 139
Msa0037320 MtrunA17_Chr1g0183741 45.033 151 75 3 21 169 12 156 3.15e-36 136
Msa0037320 MtrunA17_Chr2g0312321 51.181 127 58 3 21 147 13 135 4.17e-36 137
Msa0037320 MtrunA17_Chr2g0321741 53.333 120 52 2 39 155 12 130 1.04e-35 137
Msa0037320 MtrunA17_Chr8g0345671 53.968 126 54 3 22 144 14 138 3.96e-35 136
Msa0037320 MtrunA17_Chr7g0261411 44.966 149 74 3 21 167 12 154 5.62e-35 133
Msa0037320 MtrunA17_Chr8g0345711 47.794 136 66 4 13 144 5 139 1.60e-33 125
Msa0037320 MtrunA17_Chr8g0345691 47.368 152 70 6 13 155 5 155 3.27e-33 131
Msa0037320 MtrunA17_Chr8g0385991 47.656 128 61 2 21 146 16 139 2.20e-31 121
Msa0037320 MtrunA17_Chr3g0131911 40.719 167 85 3 21 177 16 178 3.78e-31 121
Msa0037320 MtrunA17_Chr3g0113001 37.017 181 80 5 71 223 15 189 1.08e-30 121
Msa0037320 MtrunA17_Chr7g0266701 42.236 161 81 6 21 170 6 165 3.40e-30 119
Msa0037320 MtrunA17_Chr8g0345731 45.736 129 63 5 22 144 27 154 3.13e-28 110
Msa0037320 MtrunA17_Chr2g0321631 39.752 161 89 5 19 171 4 164 1.62e-27 111
Msa0037320 MtrunA17_Chr8g0345741 44.915 118 61 3 30 144 2 118 9.09e-27 106
Msa0037320 MtrunA17_Chr4g0026141 44.961 129 65 4 21 144 7 134 2.60e-25 105
Msa0037320 MtrunA17_Chr3g0113031 49.038 104 46 3 84 181 3 105 3.88e-25 105
Msa0037320 MtrunA17_Chr8g0345721 36.774 155 65 4 22 144 38 191 2.44e-24 101
Msa0037320 MtrunA17_Chr8g0345701 41.892 148 65 6 15 144 2 146 4.46e-24 99.4
Msa0037320 MtrunA17_Chr4g0050701 39.062 128 66 4 21 146 13 130 1.51e-22 95.5
Msa0037320 MtrunA17_Chr7g0243371 39.394 99 58 1 74 170 17 115 8.78e-19 82.4
Msa0037320 MtrunA17_Chr7g0251651 31.361 169 106 5 3 168 2 163 2.61e-16 77.8
Msa0037320 MtrunA17_Chr7g0251661 31.746 126 82 3 22 146 13 135 9.13e-16 75.1
Msa0037320 MtrunA17_Chr8g0384351 33.333 126 66 5 21 146 12 119 3.18e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037320 AT1G34190.1 43.121 596 266 19 4 569 1 553 7.71e-139 414
Msa0037320 AT1G34180.1 41.356 590 286 19 6 567 3 560 3.13e-125 380
Msa0037320 AT1G34180.2 40.532 602 286 20 6 567 3 572 1.35e-121 370
Msa0037320 AT1G34180.3 47.354 378 161 10 6 370 3 355 4.77e-99 308
Msa0037320 AT1G34180.4 45.897 390 161 11 6 370 3 367 1.29e-95 300
Msa0037320 AT1G32870.1 37.655 563 285 16 21 567 12 524 6.36e-86 276
Msa0037320 AT1G32870.3 37.655 563 285 16 21 567 48 560 2.73e-85 276
Msa0037320 AT5G09330.5 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0037320 AT5G09330.2 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0037320 AT5G09330.4 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0037320 AT5G09330.3 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0037320 AT5G09330.1 41.791 335 173 8 21 339 8 336 1.22e-72 241
Msa0037320 AT1G32870.2 59.829 234 86 5 21 249 12 242 2.15e-70 236
Msa0037320 AT1G32870.2 27.444 266 161 7 330 567 257 518 5.13e-13 72.0
Msa0037320 AT5G04410.1 58.333 180 75 0 16 195 6 185 2.70e-69 234
Msa0037320 AT5G64060.1 54.971 171 77 0 21 191 8 178 3.50e-66 219
Msa0037320 AT3G10500.1 59.763 169 68 0 16 184 6 174 6.97e-65 221
Msa0037320 AT3G10480.2 45.560 259 131 5 1 250 6 263 1.21e-62 213
Msa0037320 AT3G10490.1 55.026 189 82 3 7 193 14 201 1.26e-61 204
Msa0037320 AT3G10480.1 45.385 260 131 6 1 250 6 264 2.12e-61 209
Msa0037320 AT1G65910.1 60.366 164 65 0 17 180 4 167 2.44e-61 214
Msa0037320 AT3G17730.1 61.589 151 58 0 21 171 8 158 5.59e-61 202
Msa0037320 AT3G10490.2 48.291 234 112 4 7 238 14 240 5.91e-61 209
Msa0037320 AT5G17260.1 60.000 150 59 1 21 169 8 157 7.13e-58 201
Msa0037320 AT3G03200.1 60.667 150 58 1 21 169 8 157 2.91e-57 199
Msa0037320 AT3G10480.3 43.580 257 104 5 1 217 6 261 9.74e-56 196
Msa0037320 AT1G54330.1 56.604 159 66 1 17 175 4 159 1.50e-52 182
Msa0037320 AT1G33060.1 56.494 154 66 1 17 169 21 174 2.55e-51 187
Msa0037320 AT1G33060.2 56.494 154 66 1 17 169 21 174 3.03e-51 187
Msa0037320 AT5G46590.1 53.289 152 69 2 21 170 8 159 4.69e-51 177
Msa0037320 AT4G35580.1 54.118 170 66 2 1 169 1 159 1.11e-50 182
Msa0037320 AT4G35580.2 54.118 170 66 2 1 169 1 159 1.13e-50 183
Msa0037320 AT4G35580.3 54.118 170 66 2 1 169 1 159 1.13e-50 183
Msa0037320 AT1G32510.1 54.430 158 64 2 21 170 8 165 2.48e-50 175
Msa0037320 AT4G17980.1 55.556 153 64 2 21 169 8 160 4.61e-50 174
Msa0037320 AT5G46590.2 55.319 141 61 2 21 159 8 148 5.78e-50 174
Msa0037320 AT4G17980.2 55.195 154 65 2 21 170 8 161 1.10e-49 174
Msa0037320 AT3G49530.2 45.274 201 98 3 17 215 10 200 1.85e-48 174
Msa0037320 AT5G24590.2 53.548 155 70 2 17 169 10 164 2.28e-48 174
Msa0037320 AT2G27300.1 53.289 152 67 2 7 155 2 152 4.80e-48 171
Msa0037320 AT3G49530.1 45.274 201 98 3 17 215 10 200 5.66e-48 174
Msa0037320 AT1G62700.1 44.134 179 89 5 21 194 9 181 1.07e-47 171
Msa0037320 AT1G62700.2 44.134 179 89 5 21 194 9 181 1.07e-47 171
Msa0037320 AT3G44290.2 52.448 143 64 2 16 155 11 152 1.36e-47 166
Msa0037320 AT5G22290.1 49.045 157 75 2 3 155 5 160 4.37e-47 168
Msa0037320 AT2G18060.3 44.211 190 97 4 15 202 5 187 5.16e-47 169
Msa0037320 AT2G18060.1 44.211 190 97 4 15 202 5 187 5.16e-47 169
Msa0037320 AT3G44290.1 52.448 143 64 2 16 155 11 152 6.05e-47 167
Msa0037320 AT4G36160.2 49.669 151 70 2 1 150 1 146 7.67e-47 169
Msa0037320 AT1G33280.1 50.667 150 70 2 21 169 10 156 2.82e-46 165
Msa0037320 AT1G12260.2 48.684 152 71 3 21 169 9 156 2.95e-46 166
Msa0037320 AT1G12260.1 44.068 177 90 4 21 194 9 179 3.26e-46 167
Msa0037320 AT4G36160.1 53.435 131 60 1 21 150 12 142 3.53e-46 167
Msa0037320 AT4G36160.3 53.435 131 60 1 21 150 12 142 3.53e-46 167
Msa0037320 AT1G69490.1 45.312 192 96 5 21 208 11 197 5.68e-46 163
Msa0037320 AT5G66300.1 46.951 164 85 2 21 183 14 176 7.29e-46 163
Msa0037320 AT4G27410.2 47.403 154 79 1 17 170 12 163 8.07e-46 163
Msa0037320 AT5G07680.1 47.853 163 81 2 15 175 13 173 1.01e-45 164
Msa0037320 AT4G10350.1 48.667 150 76 1 21 169 11 160 1.41e-45 164
Msa0037320 AT5G07680.2 47.826 161 80 2 17 175 1 159 1.66e-45 163
Msa0037320 AT5G61430.1 47.853 163 81 2 15 175 12 172 1.97e-45 164
Msa0037320 AT5G39820.1 51.049 143 64 3 6 146 9 147 8.16e-45 162
Msa0037320 AT1G01720.1 44.865 185 89 5 13 188 1 181 8.38e-45 160
Msa0037320 AT5G39610.1 50.000 160 70 3 21 175 22 176 1.18e-44 160
Msa0037320 AT5G62380.2 53.435 131 60 1 21 150 9 139 1.28e-44 162
Msa0037320 AT5G62380.1 53.435 131 60 1 21 150 9 139 1.28e-44 162
Msa0037320 AT1G71930.2 44.444 180 85 5 16 191 5 173 1.40e-44 161
Msa0037320 AT1G71930.1 44.444 180 85 5 16 191 5 173 1.40e-44 161
Msa0037320 AT3G15500.1 47.059 153 79 1 17 169 12 162 3.25e-44 160
Msa0037320 AT1G79580.3 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0037320 AT1G79580.5 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0037320 AT1G79580.4 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0037320 AT1G79580.2 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0037320 AT1G79580.1 47.097 155 77 3 17 169 15 166 5.44e-44 160
Msa0037320 AT3G29035.1 46.552 174 85 3 14 183 19 188 1.04e-43 158
Msa0037320 AT3G04060.1 48.780 164 73 4 15 172 16 174 1.17e-43 159
Msa0037320 AT5G18270.1 40.000 215 107 6 15 225 17 213 1.68e-43 158
Msa0037320 AT5G18270.2 40.000 215 107 6 15 225 17 213 1.88e-43 158
Msa0037320 AT2G17040.1 50.649 154 66 4 20 170 7 153 1.94e-43 156
Msa0037320 AT1G52890.1 45.283 159 85 1 17 175 12 168 3.56e-43 157
Msa0037320 AT4G27410.3 43.787 169 80 1 17 170 12 180 5.73e-43 156
Msa0037320 AT2G02450.1 48.366 153 74 3 20 171 52 200 8.84e-43 157
Msa0037320 AT2G24430.2 50.327 153 69 4 21 170 18 166 9.41e-43 155
Msa0037320 AT2G24430.1 50.327 153 69 4 21 170 18 166 9.41e-43 155
Msa0037320 AT1G77450.1 48.052 154 74 3 21 171 12 162 1.10e-42 154
Msa0037320 AT2G02450.2 48.366 153 74 3 20 171 52 200 1.17e-42 158
Msa0037320 AT3G18400.1 46.452 155 80 2 21 175 7 158 1.46e-42 155
Msa0037320 AT2G43000.1 47.059 153 78 2 18 169 17 167 1.50e-42 154
Msa0037320 AT1G61110.1 52.857 140 63 2 21 159 18 155 1.52e-42 155
Msa0037320 AT2G46770.1 46.667 150 76 2 1 149 1 147 1.55e-42 156
Msa0037320 AT3G61910.1 49.275 138 68 2 21 156 13 150 2.16e-42 155
Msa0037320 AT1G76420.1 50.968 155 67 4 21 171 24 173 2.76e-42 155
Msa0037320 AT3G15170.1 51.282 156 68 4 21 171 22 174 3.54e-42 154
Msa0037320 AT1G32770.1 50.388 129 63 1 21 148 18 146 3.63e-42 155
Msa0037320 AT1G26870.1 46.626 163 72 4 20 170 17 176 4.10e-42 157
Msa0037320 AT5G63790.1 46.452 155 75 3 22 171 53 204 5.70e-42 154
Msa0037320 AT5G63790.2 46.452 155 75 3 22 171 63 214 8.21e-42 153
Msa0037320 AT5G53950.1 50.641 156 67 5 21 170 19 170 1.06e-41 154
Msa0037320 AT5G08790.1 47.097 155 74 3 22 171 10 161 1.38e-41 152
Msa0037320 AT5G13180.1 47.853 163 77 3 16 176 11 167 3.74e-41 149
Msa0037320 AT3G04070.2 42.593 162 79 4 21 170 12 171 4.06e-41 152
Msa0037320 AT3G15510.1 38.571 210 104 4 23 219 21 218 7.11e-41 152
Msa0037320 AT3G04070.1 48.092 131 61 2 21 146 12 140 2.24e-40 150
Msa0037320 AT2G33480.1 48.701 154 74 1 16 169 12 160 1.50e-39 145
Msa0037320 AT2G33480.2 48.701 154 72 2 16 169 12 158 2.96e-39 145
Msa0037320 AT3G12977.1 44.156 154 83 2 21 173 20 171 6.68e-38 141
Msa0037320 AT1G56010.2 41.765 170 93 3 21 186 21 188 3.77e-37 140
Msa0037320 AT5G04395.1 42.683 164 79 3 2 150 10 173 5.13e-35 130
Msa0037320 AT1G52880.1 46.250 160 72 3 23 170 21 178 7.24e-35 134
Msa0037320 AT3G12910.1 48.485 132 60 3 20 146 22 150 6.87e-34 131
Msa0037320 AT4G28530.1 42.604 169 69 6 21 169 12 172 1.02e-31 126
Msa0037320 AT5G61430.2 50.467 107 51 1 71 175 3 109 1.19e-30 121
Msa0037320 AT3G44350.2 39.355 155 89 5 22 171 8 162 1.66e-28 114
Msa0037320 AT4G01550.1 38.857 175 94 5 16 183 1 169 1.78e-28 119
Msa0037320 AT5G22380.1 40.764 157 86 6 22 171 8 164 6.17e-28 112
Msa0037320 AT3G44350.1 40.523 153 86 5 22 169 8 160 1.01e-27 109
Msa0037320 AT3G10490.4 45.205 146 72 3 94 238 2 140 1.24e-27 114
Msa0037320 AT3G10490.3 45.205 146 72 3 94 238 2 140 1.24e-27 114
Msa0037320 AT4G10350.2 45.918 98 53 0 72 169 16 113 8.69e-27 110
Msa0037320 AT1G56010.1 44.444 117 62 1 73 186 5 121 1.09e-26 109
Msa0037320 AT3G04420.2 40.800 125 72 1 22 144 6 130 2.98e-26 109
Msa0037320 AT3G12977.2 46.154 104 55 1 71 173 15 118 4.17e-26 107
Msa0037320 AT3G04420.1 40.800 125 72 1 22 144 6 130 1.08e-25 108
Msa0037320 AT4G01520.1 39.706 136 77 3 16 146 1 136 1.18e-24 105
Msa0037320 AT4G01540.3 39.706 136 77 3 16 146 1 136 2.00e-24 106
Msa0037320 AT4G01540.2 39.706 136 77 3 16 146 1 136 2.11e-24 106
Msa0037320 AT4G01540.1 39.706 136 77 3 16 146 1 136 2.75e-24 106
Msa0037320 AT4G01540.4 39.706 136 77 3 16 146 1 136 2.91e-24 105
Msa0037320 AT5G64530.2 39.552 134 65 5 17 148 1 120 6.76e-23 95.9
Msa0037320 AT5G64530.1 40.152 132 63 5 17 146 1 118 4.05e-22 94.7
Msa0037320 AT1G02230.1 40.625 128 68 3 22 144 6 130 1.07e-21 97.4
Msa0037320 AT1G02250.1 38.346 133 74 3 17 144 1 130 2.57e-21 96.3
Msa0037320 AT2G33480.3 46.000 100 52 1 72 169 4 103 3.79e-21 92.4
Msa0037320 AT1G02220.1 37.692 130 76 2 17 144 1 127 7.15e-20 92.4
Msa0037320 AT4G28530.2 45.370 108 41 3 21 112 12 117 3.03e-19 89.4
Msa0037320 AT1G01010.1 37.589 141 76 3 17 147 1 139 9.36e-18 86.3
Msa0037320 AT5G14000.2 32.283 127 80 2 22 146 18 140 4.56e-17 79.0
Msa0037320 AT5G22290.2 56.667 60 22 1 100 155 2 61 7.14e-17 80.9
Msa0037320 AT2G18060.2 39.583 96 55 2 100 194 3 96 3.88e-16 79.3
Msa0037320 AT3G56530.1 31.544 149 97 4 21 167 54 199 5.54e-16 79.7
Msa0037320 AT5G14000.1 30.263 152 97 3 22 171 18 162 5.81e-16 77.4
Msa0037320 AT2G43000.2 42.045 88 50 1 83 169 2 89 2.45e-15 75.5
Msa0037320 AT3G55210.1 30.000 160 94 4 21 167 13 167 4.90e-15 76.3
Msa0037320 AT1G28470.1 34.659 176 85 11 17 172 74 239 1.02e-11 66.6

Find 166 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAAATTTAAGACTATT+AGG 0.168141 1_1:-66322618 Msa0037320:CDS
GCCCATTCTTCTTCTTTAAA+TGG 0.196298 1_1:+66324429 None:intergenic
ACAGTTTGATTTGCGTCTTC+TGG 0.203030 1_1:+66323376 None:intergenic
TCTAGAATTAAAGCTGAATT+TGG 0.211729 1_1:+66322425 None:intergenic
CCATACTGTTCACCGTTCTT+AGG 0.238231 1_1:+66324456 None:intergenic
GAAATTGATGAAATCATTAA+AGG 0.241716 1_1:-66324297 Msa0037320:CDS
GATCGAGATGGGTGCGGTTT+CGG 0.256333 1_1:-66325963 Msa0037320:exon
CAAAATATCGAGAGAGAAAA+TGG 0.259622 1_1:+66326303 None:intergenic
ATCAAACTGTTGATGAATTC+TGG 0.264215 1_1:-66323363 Msa0037320:CDS
CTGAAAATCCCTTGGTAAAT+CGG 0.287533 1_1:-66322809 Msa0037320:CDS
AAAACCCACAACAAAATAAT+AGG 0.305550 1_1:+66326219 None:intergenic
TATTGTAAGGTGAAAGGTTT+AGG 0.308091 1_1:+66326351 None:intergenic
GCTTTCTTGTGGGTTTCTAT+TGG 0.323704 1_1:-66322636 Msa0037320:CDS
TCAGCTTTAATTCTAGAGTA+AGG 0.332283 1_1:-66322419 Msa0037320:three_prime_UTR
GAACAATCTTTCCTGAAAAC+TGG 0.333240 1_1:-66324898 Msa0037320:CDS
TCCTCCCCGCTTTGAATGTT+CGG 0.334586 1_1:+66323661 None:intergenic
TCGTCAATTCCAACTATCTA+AGG 0.339515 1_1:-66326082 Msa0037320:five_prime_UTR
TGCTTTATGTGCTTTCTTGT+GGG 0.339931 1_1:-66322646 Msa0037320:CDS
TTGGAAATTTAAGACTATTA+GGG 0.350725 1_1:-66322617 Msa0037320:CDS
TGATGAAGAAACACGAAATA+TGG 0.352461 1_1:-66323842 Msa0037320:CDS
GAGATGTTTCTTTGTGGCCT+GGG 0.356280 1_1:-66323487 Msa0037320:CDS
TTCAACTCAAGGTAAGGTTT+AGG 0.361601 1_1:-66322453 Msa0037320:three_prime_UTR
AAATAATAGGATCGAACCTC+TGG 0.362954 1_1:+66326232 None:intergenic
TATCTATAGCAGCAAAACTT+TGG 0.381183 1_1:+66322566 None:intergenic
GCACATAAAGCAATAAGAAT+CGG 0.388701 1_1:+66322657 None:intergenic
TGATTCAAGCCTTAGATAGT+TGG 0.389714 1_1:+66326073 None:intergenic
TCCCGCGTAGTATCAAGTTT+TGG 0.394458 1_1:-66322313 Msa0037320:three_prime_UTR
GGTACGAGGATTCGAGGATT+AGG 0.400673 1_1:+66326254 None:intergenic
CACTCAACACATCTTCAAAC+TGG 0.409957 1_1:+66323533 None:intergenic
TAAGACATGCCGTGATGTTA+AGG 0.415877 1_1:-66324641 Msa0037320:intron
ATCTGAAAAGGAAGATTTGT+GGG 0.421125 1_1:-66325850 Msa0037320:CDS
TTGATTTGCGTCTTCTGGAT+TGG 0.421770 1_1:+66323381 None:intergenic
AGAGATGTTTCTTTGTGGCC+TGG 0.424888 1_1:-66323488 Msa0037320:CDS
GAAATGTGATATACAATTCT+CGG 0.433492 1_1:-66324768 Msa0037320:CDS
ATGAAGAGAGCAGGCAGAAA+GGG 0.435247 1_1:-66322699 Msa0037320:CDS
GTTGAAGTTCAACGTTATCA+AGG 0.436333 1_1:-66325822 Msa0037320:CDS
GAATCAGTCAATATTGTTGT+GGG 0.439215 1_1:-66326056 Msa0037320:five_prime_UTR
AAAGGTTTAGGATAGTGTTA+TGG 0.442553 1_1:+66326363 None:intergenic
TTGCTTTATGTGCTTTCTTG+TGG 0.443767 1_1:-66322647 Msa0037320:CDS
CCTAAGAACGGTGAACAGTA+TGG 0.447178 1_1:-66324456 Msa0037320:CDS
CTTCTGGATTGGACAACAAC+TGG 0.447857 1_1:+66323392 None:intergenic
ACTTTGGATTTACATATTCA+AGG 0.452308 1_1:+66322582 None:intergenic
CAATAAGAATCGGGAAGAAA+AGG 0.454768 1_1:+66322667 None:intergenic
CACCATTTAAAGAAGAAGAA+TGG 0.455058 1_1:-66324431 Msa0037320:CDS
TGTATTTGAAAATGTAGATT+CGG 0.456852 1_1:+66323588 None:intergenic
GATGCAGAGATGTTTCTTTG+TGG 0.460432 1_1:-66323493 Msa0037320:CDS
TAAATATTCAACTCAAGGTA+AGG 0.461844 1_1:-66322459 Msa0037320:three_prime_UTR
CACATAAAGCAATAAGAATC+GGG 0.470798 1_1:+66322658 None:intergenic
AAATTGATGAAATCATTAAA+GGG 0.472368 1_1:-66324296 Msa0037320:CDS
TTAATGTAAATTCAGTTGAC+CGG 0.472399 1_1:-66324386 Msa0037320:CDS
TAGTGGTGAGCGAACTGATT+GGG 0.473263 1_1:-66324698 Msa0037320:CDS
TAGTGAGTTTGTGAGCTTGT+TGG 0.473308 1_1:+66326471 None:intergenic
GAGGTGATGTCGTCGATGCC+AGG 0.473742 1_1:-66325914 Msa0037320:CDS
TGAAAATCCCTTGGTAAATC+GGG 0.476781 1_1:-66322808 Msa0037320:CDS
TGGTTATGTTGACTTTCCTC+AGG 0.478965 1_1:-66324232 Msa0037320:intron
ACCATTTAAAGAAGAAGAAT+GGG 0.480249 1_1:-66324430 Msa0037320:CDS
TCTTTCTCTCTAACAAATCC+AGG 0.483310 1_1:-66323292 Msa0037320:intron
TGGTGATGTATTATCTGAAA+AGG 0.485179 1_1:-66325862 Msa0037320:CDS
TGAATCAGTCAATATTGTTG+TGG 0.485192 1_1:-66326057 Msa0037320:five_prime_UTR
CCTCTGGGTACGAGGATTCG+AGG 0.488887 1_1:+66326248 None:intergenic
CAGCTTTAATTCTAGAGTAA+GGG 0.489608 1_1:-66322418 Msa0037320:three_prime_UTR
AAAGAAACATCTCTGCATCT+TGG 0.490156 1_1:+66323497 None:intergenic
CTTTGGATTTACATATTCAA+GGG 0.491520 1_1:+66322583 None:intergenic
GGACTATTATGCACTTTACA+AGG 0.492066 1_1:-66324502 Msa0037320:CDS
TGTTGTAAATATTCAACTCA+AGG 0.494233 1_1:-66322464 Msa0037320:three_prime_UTR
AGAGTATGAAGGTTATTGTA+AGG 0.494765 1_1:+66326338 None:intergenic
GATAGTGTTATGGTCAAAGA+AGG 0.494857 1_1:+66326373 None:intergenic
CGACTAGACCTTCCACCGTT+AGG 0.494968 1_1:+66324832 None:intergenic
ATCGAATGTCTAGCTTCAGC+AGG 0.496594 1_1:-66322779 Msa0037320:CDS
GAAGGTTATTGTAAGGTGAA+AGG 0.497229 1_1:+66326345 None:intergenic
ATCACCAACTCCTCATCTGT+TGG 0.497258 1_1:+66325878 None:intergenic
AGGAAGCTAAGGTAAGTGGT+TGG 0.497513 1_1:+66326393 None:intergenic
CATGGCTACTGGAAAGCTAC+TGG 0.501589 1_1:-66324799 Msa0037320:CDS
TTGATGATTGAAGTCAAAGC+TGG 0.501672 1_1:+66323735 None:intergenic
ACCTGCAGCAATGTTGTTGT+CGG 0.505799 1_1:+66322740 None:intergenic
TATCTGAAAAGGAAGATTTG+TGG 0.507777 1_1:-66325851 Msa0037320:CDS
ACATTGTCAACAGCAGCCTC+TGG 0.508902 1_1:+66324357 None:intergenic
CAAATACCAGGTAAATCCTC+AGG 0.509072 1_1:+66325776 None:intergenic
AACATCTCTGCATCTTGGTA+AGG 0.509554 1_1:+66323502 None:intergenic
AGGAAACTGATGTGTACAAG+TGG 0.511941 1_1:-66325802 Msa0037320:CDS
TTCGGAGTGGAAGTGACCTC+AGG 0.519504 1_1:+66323679 None:intergenic
TAGATTCTCCTCAGCTCTGT+GGG 0.520308 1_1:-66322871 Msa0037320:CDS
TGCAGCAATGTTGTTGTCGG+TGG 0.520896 1_1:+66322743 None:intergenic
CATAACCATTCACATGTTGC+TGG 0.521973 1_1:+66324247 None:intergenic
GAGCAACTAGACATGGCTAC+TGG 0.524027 1_1:-66324810 Msa0037320:CDS
CAATCAGTTCGCTCACCACT+AGG 0.525126 1_1:+66324700 None:intergenic
AGATGTTTCTTTGTGGCCTG+GGG 0.525648 1_1:-66323486 Msa0037320:CDS
CTTTCCTGAAAACTGGAGAC+AGG 0.526319 1_1:-66324891 Msa0037320:CDS
ATAACCTTCAGCTGGACTGC+GGG 0.526602 1_1:+66323321 None:intergenic
GTTGGATGAAAGCGAAAACC+TGG 0.526637 1_1:+66325896 None:intergenic
ACATGTTGCTGGTCAAGGAC+AGG 0.530141 1_1:+66324258 None:intergenic
CTAGTGGTGAGCGAACTGAT+TGG 0.530398 1_1:-66324699 Msa0037320:CDS
GAACCATCATAACCTTCAGC+TGG 0.532336 1_1:+66323313 None:intergenic
TCATCCAACAGATGAGGAGT+TGG 0.537248 1_1:-66325882 Msa0037320:CDS
ACTTGGATCAGGGAATATCA+TGG 0.537254 1_1:+66323798 None:intergenic
CCACTCCGAACATTCAAAGC+GGG 0.539242 1_1:-66323666 Msa0037320:CDS
TCTTCTGATCGAGATGGGTG+CGG 0.539716 1_1:-66325969 Msa0037320:exon
GGTGTTGTGTGTGACTCTGT+CGG 0.542109 1_1:-66322951 Msa0037320:CDS
ATCAGCTGCTGAAAATCCCT+TGG 0.543692 1_1:-66322817 Msa0037320:CDS
TATGAAGAGAGCAGGCAGAA+AGG 0.544360 1_1:-66322700 Msa0037320:CDS
ATATACAATTCTCGGTCAGT+TGG 0.550050 1_1:-66324760 Msa0037320:CDS
CATGCATATATGAATAGCAC+TGG 0.554571 1_1:-66323439 Msa0037320:CDS
CTTAAGCTCATCTTCATCCA+TGG 0.555126 1_1:+66324660 None:intergenic
TGGAAGGTTCCTACAAAATG+AGG 0.557920 1_1:+66326413 None:intergenic
ATGGTCAAAGAAGGAAGCTA+AGG 0.562583 1_1:+66326382 None:intergenic
ACCGACAACAACATTGCTGC+AGG 0.564654 1_1:-66322741 Msa0037320:CDS
TTTCTTCGTTAATAGACCCC+AGG 0.566378 1_1:+66323470 None:intergenic
GCAGCTGATGCAGGAGTGGT+AGG 0.567625 1_1:+66322831 None:intergenic
AAGAAGGAAGCTAAGGTAAG+TGG 0.567857 1_1:+66326389 None:intergenic
CATTCACATGTTGCTGGTCA+AGG 0.569092 1_1:+66324253 None:intergenic
AGCTAAGGTAAGTGGTTGGA+AGG 0.569646 1_1:+66326397 None:intergenic
AGTCCAGCTGAAGGTTATGA+TGG 0.570391 1_1:-66323316 Msa0037320:CDS
GGTCATGGATCAATTCTATG+AGG 0.570510 1_1:-66323821 Msa0037320:CDS
TTCAGCAGCTGATGCAGGAG+TGG 0.571280 1_1:+66322827 None:intergenic
CTTGACCAGCAACATGTGAA+TGG 0.574283 1_1:-66324252 Msa0037320:CDS
GTGTATTTCTGAAGCACCTG+AGG 0.574286 1_1:-66323695 Msa0037320:CDS
GGAAGTATCCTAACGGTGGA+AGG 0.576876 1_1:-66324840 Msa0037320:CDS
TGTTCACCGTTCTTAGGACC+CGG 0.583775 1_1:+66324462 None:intergenic
GCAGCAATGTTGTTGTCGGT+GGG 0.584407 1_1:+66322744 None:intergenic
TGAAGAGAGCAGGCAGAAAG+GGG 0.585879 1_1:-66322698 Msa0037320:CDS
TCGCTTTCATCCAACAGATG+AGG 0.586681 1_1:-66325888 Msa0037320:CDS
TCTCTTCAGAATTAAATGAA+AGG 0.586845 1_1:-66322529 Msa0037320:three_prime_UTR
TTCAAAGCCCGATTTACCAA+GGG 0.588762 1_1:+66322801 None:intergenic
TAATGTAAATTCAGTTGACC+GGG 0.596335 1_1:-66324385 Msa0037320:CDS
ATTCAAAGCCCGATTTACCA+AGG 0.600157 1_1:+66322800 None:intergenic
CAGCAGCCTCTGGAACCTCC+CGG 0.601016 1_1:+66324367 None:intergenic
ACTGCAACTATGAAGAGAGC+AGG 0.602471 1_1:-66322708 Msa0037320:CDS
TGAAAACTGGAGACAGGCAA+TGG 0.602773 1_1:-66324885 Msa0037320:CDS
AATAATAGGATCGAACCTCT+GGG 0.606378 1_1:+66326233 None:intergenic
TTTGGATTTACATATTCAAG+GGG 0.609182 1_1:+66322584 None:intergenic
GAAATTTAAGACTATTAGGG+AGG 0.609647 1_1:-66322614 Msa0037320:CDS
CCCGCTTTGAATGTTCGGAG+TGG 0.613926 1_1:+66323666 None:intergenic
AGAAACACGAAATATGGTCA+TGG 0.614827 1_1:-66323836 Msa0037320:CDS
TGATTCAGTGCCTTTGAGTG+AGG 0.615063 1_1:+66326441 None:intergenic
TCTAGAGTAAGGGCTTGTAT+CGG 0.617355 1_1:-66322408 Msa0037320:three_prime_UTR
AGTTGACCGGGAGGTTCCAG+AGG 0.618649 1_1:-66324373 Msa0037320:CDS
TGGGATCCTGAGGATTTACC+TGG 0.620679 1_1:-66325782 Msa0037320:intron
GTAGATTCTCCTCAGCTCTG+TGG 0.621558 1_1:-66322872 Msa0037320:CDS
TGTAAATTCAGTTGACCGGG+AGG 0.624909 1_1:-66324382 Msa0037320:CDS
CATAACCTTCAGCTGGACTG+CGG 0.625001 1_1:+66323320 None:intergenic
AACACCCGCAGTCCAGCTGA+AGG 0.628590 1_1:-66323325 Msa0037320:CDS
TCAATTTCATCATCAAACAA+CGG 0.629730 1_1:+66324312 None:intergenic
TTCTGCTGATTGTTTCAGTG+AGG 0.630580 1_1:-66325933 Msa0037320:CDS
ACCAAAACTTGATACTACGC+GGG 0.631310 1_1:+66322312 None:intergenic
CTAGTCACTACCTCACTCAA+AGG 0.632055 1_1:-66326451 Msa0037320:five_prime_UTR
AGTGGACCGGGTCCTAAGAA+CGG 0.632315 1_1:-66324468 Msa0037320:CDS
AACAAAGGCCCACAGAGCTG+AGG 0.632369 1_1:+66322863 None:intergenic
TCTAGTCGAGCAACTAGACA+TGG 0.640127 1_1:-66324817 Msa0037320:CDS
TATCTTGGCAGAGCTCCTAG+TGG 0.644063 1_1:-66324715 Msa0037320:CDS
TCAACACATCTTCAAACTGG+AGG 0.645209 1_1:+66323536 None:intergenic
TGATGATTGAAGTCAAAGCT+GGG 0.651527 1_1:+66323736 None:intergenic
GGATCGAACCTCTGGGTACG+AGG 0.652799 1_1:+66326240 None:intergenic
CACTCCGAACATTCAAAGCG+GGG 0.660148 1_1:-66323665 Msa0037320:CDS
AAGGTAATACCTTAACATCA+CGG 0.661498 1_1:+66324632 None:intergenic
GGAAACTGATGTGTACAAGT+GGG 0.664415 1_1:-66325801 Msa0037320:CDS
GGTAGGTATTGAATCAACAA+AGG 0.665588 1_1:+66322848 None:intergenic
AGAGATAGGAAGTATCCTAA+CGG 0.667183 1_1:-66324847 Msa0037320:CDS
GATAGGAAGTATCCTAACGG+TGG 0.667673 1_1:-66324844 Msa0037320:CDS
TCGAATGTCTAGCTTCAGCA+GGG 0.672244 1_1:-66322778 Msa0037320:CDS
GAAGAGAGCAGGCAGAAAGG+GGG 0.676486 1_1:-66322697 Msa0037320:CDS
TCCACTCCGAACATTCAAAG+CGG 0.683841 1_1:-66323667 Msa0037320:CDS
GACCAAAACTTGATACTACG+CGG 0.691769 1_1:+66322311 None:intergenic
TCCGAACATTCAAAGCGGGG+AGG 0.705397 1_1:-66323662 Msa0037320:CDS
CCTCGAATCCTCGTACCCAG+AGG 0.706992 1_1:-66326248 Msa0037320:five_prime_UTR
TGTGTACAAGTGGGATCCTG+AGG 0.709821 1_1:-66325792 Msa0037320:CDS
GGTTATGCATGAGTACACCA+TGG 0.756724 1_1:-66324677 Msa0037320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAATTTGATTTTTTAATT+AGG - chr1_1:66322572-66322591 Msa0037320:three_prime_UTR 10.0%
!!! GAAATTTGATTTTTTAATTA+GGG - chr1_1:66322573-66322592 Msa0037320:three_prime_UTR 10.0%
!! AATTTATTTCCTTAAAATAA+TGG - chr1_1:66323664-66323683 Msa0037320:CDS 10.0%
!! ATTTATTTCCTTAAAATAAT+GGG - chr1_1:66323665-66323684 Msa0037320:CDS 10.0%
!!! TTTAAAATTATTGTTTCTGT+TGG - chr1_1:66324112-66324131 Msa0037320:intron 15.0%
!! TTTGATATAAATTCATTATC+AGG - chr1_1:66324182-66324201 Msa0037320:intron 15.0%
!! AAATTGATGAAATCATTAAA+GGG - chr1_1:66324409-66324428 Msa0037320:CDS 15.0%
!!! AGTTTTTTTTTTTGTCAAAT+GGG + chr1_1:66324673-66324692 None:intergenic 15.0%
!!! AAGTTTTTTTTTTTGTCAAA+TGG + chr1_1:66324674-66324693 None:intergenic 15.0%
!!! AAGCTTTTTGAATAAATAAG+TGG + chr1_1:66322520-66322539 None:intergenic 20.0%
!!! TTTTGTTTTGTTATCTCTTT+TGG - chr1_1:66322545-66322564 Msa0037320:three_prime_UTR 20.0%
!!! TTTGTTTTGTTATCTCTTTT+GGG - chr1_1:66322546-66322565 Msa0037320:three_prime_UTR 20.0%
!! ATAACCAACAAAAAAAAACT+AGG + chr1_1:66323022-66323041 None:intergenic 20.0%
!!! TTGGTTATGTTTATGATTTT+TGG - chr1_1:66323034-66323053 Msa0037320:intron 20.0%
!!! GTTGGTTATATTAATGTTTT+TGG - chr1_1:66323065-66323084 Msa0037320:intron 20.0%
!!! ATGTTTTTGGTTTTGTTTAA+TGG - chr1_1:66323109-66323128 Msa0037320:intron 20.0%
!! TTCATGTTATGACTTATAAT+TGG - chr1_1:66323337-66323356 Msa0037320:CDS 20.0%
!! GAAATTGATGAAATCATTAA+AGG - chr1_1:66324408-66324427 Msa0037320:CDS 20.0%
!!! TTTTAGAAAAAAAATACTCC+AGG + chr1_1:66324510-66324529 None:intergenic 20.0%
!!! CATTTTTCCATGAATAATAT+AGG - chr1_1:66324836-66324855 Msa0037320:CDS 20.0%
!! TGTATTTGAAAATGTAGATT+CGG + chr1_1:66325120-66325139 None:intergenic 20.0%
!! ACAAAATTTAAACTCCATAA+AGG + chr1_1:66325596-66325615 None:intergenic 20.0%
!!! ATTGGAAATTTAAGACTATT+AGG - chr1_1:66326087-66326106 Msa0037320:five_prime_UTR 20.0%
!!! TTGGAAATTTAAGACTATTA+GGG - chr1_1:66326088-66326107 Msa0037320:five_prime_UTR 20.0%
!! CAAAAAAGAAAACAGAAATA+AGG + chr1_1:66326371-66326390 None:intergenic 20.0%
!!! CTTATTTCTGTTTTCTTTTT+TGG - chr1_1:66326369-66326388 Msa0037320:five_prime_UTR 20.0%
! TGAAAAATAACAGAGTATGA+AGG + chr1_1:66322381-66322400 None:intergenic 25.0%
!! ATTTTCTCTCTCGATATTTT+GGG - chr1_1:66322404-66322423 Msa0037320:three_prime_UTR 25.0%
! AAAACCCACAACAAAATAAT+AGG + chr1_1:66322489-66322508 None:intergenic 25.0%
!!! TTGTTTTGTTATCTCTTTTG+GGG - chr1_1:66322547-66322566 Msa0037320:three_prime_UTR 25.0%
!!! TTGACCTAGTTTTTTTTTGT+TGG - chr1_1:66323015-66323034 Msa0037320:intron 25.0%
!!! TGATTTTTGGTTTTGTTTGT+TGG - chr1_1:66323047-66323066 Msa0037320:intron 25.0%
!!! ATGTTTTTGGTTTTGTTTGT+TGG - chr1_1:66323078-66323097 Msa0037320:intron 25.0%
!!! GGTTTTGTTTAATGGTTATA+AGG - chr1_1:66323117-66323136 Msa0037320:intron 25.0%
! TGTACATAATATTCACAACA+AGG + chr1_1:66323172-66323191 None:intergenic 25.0%
! CCAAAATATCAAATAAGCAT+AGG + chr1_1:66323218-66323237 None:intergenic 25.0%
!! CCTATGCTTATTTGATATTT+TGG - chr1_1:66323215-66323234 Msa0037320:intron 25.0%
!!! ATATTTTGGATGTGTTTTTC+AGG - chr1_1:66323229-66323248 Msa0037320:intron 25.0%
! AAAAACCTTATCGAAACAAA+TGG + chr1_1:66323277-66323296 None:intergenic 25.0%
!!! TAAGGTTTTTGTGTGTTATT+TGG - chr1_1:66323287-66323306 Msa0037320:intron 25.0%
!!! AAGGTTTTTGTGTGTTATTT+GGG - chr1_1:66323288-66323307 Msa0037320:intron 25.0%
!! TATAATTGGTGTTTATTCGA+TGG - chr1_1:66323351-66323370 Msa0037320:CDS 25.0%
!! ATAATTGGTGTTTATTCGAT+GGG - chr1_1:66323352-66323371 Msa0037320:CDS 25.0%
!!! TGTCAGCTTTATCTATTTTT+TGG - chr1_1:66323478-66323497 Msa0037320:CDS 25.0%
!!! GTCAGCTTTATCTATTTTTT+GGG - chr1_1:66323479-66323498 Msa0037320:CDS 25.0%
!!! TCAGCTTTATCTATTTTTTG+GGG - chr1_1:66323480-66323499 Msa0037320:CDS 25.0%
! TTGAGAACCAAAAATATCTA+CGG + chr1_1:66323582-66323601 None:intergenic 25.0%
!! CTTGTATATGTTGGTAAATA+TGG - chr1_1:66323624-66323643 Msa0037320:CDS 25.0%
!!! TCCTTAAAATAATGGGTTTT+TGG - chr1_1:66323672-66323691 Msa0037320:CDS 25.0%
!!! TCCAAAAACCCATTATTTTA+AGG + chr1_1:66323676-66323695 None:intergenic 25.0%
! AAACCAAAAGAAATGAAGAA+GGG + chr1_1:66323758-66323777 None:intergenic 25.0%
! GAAATGTGATATACAATTCT+CGG - chr1_1:66323937-66323956 Msa0037320:intron 25.0%
! AAATCAAAATAGTCAGTTGA+AGG + chr1_1:66324095-66324114 None:intergenic 25.0%
! ACCATTTAAAGAAGAAGAAT+GGG - chr1_1:66324275-66324294 Msa0037320:CDS 25.0%
! TTAATGTAAATTCAGTTGAC+CGG - chr1_1:66324319-66324338 Msa0037320:CDS 25.0%
! TCAATTTCATCATCAAACAA+CGG + chr1_1:66324396-66324415 None:intergenic 25.0%
! CAACAACAAAAAAGGAATAA+AGG + chr1_1:66324553-66324572 None:intergenic 25.0%
!!! TTATTCCTTTTTTGTTGTTG+CGG - chr1_1:66324553-66324572 Msa0037320:intron 25.0%
! AAAACAGATGATTACATACA+TGG + chr1_1:66324604-66324623 None:intergenic 25.0%
!! AAACTTTGCAGCTTTTTATA+AGG - chr1_1:66324688-66324707 Msa0037320:CDS 25.0%
!! AACTTTGCAGCTTTTTATAA+GGG - chr1_1:66324689-66324708 Msa0037320:CDS 25.0%
!! TGATTTTACTTTCTTCGATT+TGG - chr1_1:66325481-66325500 Msa0037320:intron 25.0%
! CCAAAAACTATGACAAATTA+GGG + chr1_1:66325725-66325744 None:intergenic 25.0%
! ACCAAAAACTATGACAAATT+AGG + chr1_1:66325726-66325745 None:intergenic 25.0%
! TTTGGATTTACATATTCAAG+GGG + chr1_1:66326124-66326143 None:intergenic 25.0%
! CTTTGGATTTACATATTCAA+GGG + chr1_1:66326125-66326144 None:intergenic 25.0%
! ACTTTGGATTTACATATTCA+AGG + chr1_1:66326126-66326145 None:intergenic 25.0%
! TCTCTTCAGAATTAAATGAA+AGG - chr1_1:66326176-66326195 Msa0037320:five_prime_UTR 25.0%
! TGTTGTAAATATTCAACTCA+AGG - chr1_1:66326241-66326260 Msa0037320:five_prime_UTR 25.0%
! TAAATATTCAACTCAAGGTA+AGG - chr1_1:66326246-66326265 Msa0037320:five_prime_UTR 25.0%
!! TCTAGAATTAAAGCTGAATT+TGG + chr1_1:66326283-66326302 None:intergenic 25.0%
! ATCATTCTTCCTCATTTTGT+AGG - chr1_1:66322283-66322302 Msa0037320:three_prime_UTR 30.0%
! AAAGGTTTAGGATAGTGTTA+TGG + chr1_1:66322345-66322364 None:intergenic 30.0%
TATTGTAAGGTGAAAGGTTT+AGG + chr1_1:66322357-66322376 None:intergenic 30.0%
AGAGTATGAAGGTTATTGTA+AGG + chr1_1:66322370-66322389 None:intergenic 30.0%
CAAAATATCGAGAGAGAAAA+TGG + chr1_1:66322405-66322424 None:intergenic 30.0%
! CATTTTCTCTCTCGATATTT+TGG - chr1_1:66322403-66322422 Msa0037320:three_prime_UTR 30.0%
!! TCGATCCTATTATTTTGTTG+TGG - chr1_1:66322481-66322500 Msa0037320:three_prime_UTR 30.0%
!! CGATCCTATTATTTTGTTGT+GGG - chr1_1:66322482-66322501 Msa0037320:three_prime_UTR 30.0%
TGAATCAGTCAATATTGTTG+TGG - chr1_1:66322648-66322667 Msa0037320:CDS 30.0%
GAATCAGTCAATATTGTTGT+GGG - chr1_1:66322649-66322668 Msa0037320:CDS 30.0%
! TCAATATTGTTGTGGGTTTT+TGG - chr1_1:66322656-66322675 Msa0037320:CDS 30.0%
!! GGTTTTGATCGAAAAAGTTT+CGG - chr1_1:66322677-66322696 Msa0037320:CDS 30.0%
! ATCGAAAAAGTTTCGGTTTT+TGG - chr1_1:66322684-66322703 Msa0037320:CDS 30.0%
! TGGTGATGTATTATCTGAAA+AGG - chr1_1:66322843-66322862 Msa0037320:CDS 30.0%
TATCTGAAAAGGAAGATTTG+TGG - chr1_1:66322854-66322873 Msa0037320:CDS 30.0%
ATCTGAAAAGGAAGATTTGT+GGG - chr1_1:66322855-66322874 Msa0037320:CDS 30.0%
! ACCTTTTATGTTTTTCCGAT+TGG - chr1_1:66322978-66322997 Msa0037320:intron 30.0%
ACCAATCGGAAAAACATAAA+AGG + chr1_1:66322982-66323001 None:intergenic 30.0%
ACAAAATGACAATCACCAAT+CGG + chr1_1:66322996-66323015 None:intergenic 30.0%
! GTTGGTTATGTTCATGTTTT+TGG - chr1_1:66323096-66323115 Msa0037320:intron 30.0%
!! ATGGTTATAAGGTGTTGATT+TGG - chr1_1:66323128-66323147 Msa0037320:intron 30.0%
!! TGGTTATAAGGTGTTGATTT+GGG - chr1_1:66323129-66323148 Msa0037320:intron 30.0%
! TTACCCTTCTTCATTTCTTT+TGG - chr1_1:66323752-66323771 Msa0037320:CDS 30.0%
CAAACCAAAAGAAATGAAGA+AGG + chr1_1:66323759-66323778 None:intergenic 30.0%
! TCTTTTTCTGTCATAGAGAT+AGG - chr1_1:66323844-66323863 Msa0037320:CDS 30.0%
!! AAGACACTTGTTTTCTATCT+TGG - chr1_1:66323975-66323994 Msa0037320:intron 30.0%
AAGGTAATACCTTAACATCA+CGG + chr1_1:66324076-66324095 None:intergenic 30.0%
!! TACAAGGTTTTCAAGAAAAG+TGG - chr1_1:66324219-66324238 Msa0037320:intron 30.0%
CACCATTTAAAGAAGAAGAA+TGG - chr1_1:66324274-66324293 Msa0037320:CDS 30.0%
TAATGTAAATTCAGTTGACC+GGG - chr1_1:66324320-66324339 Msa0037320:CDS 30.0%
!!! TATTCCTTTTTTGTTGTTGC+GGG - chr1_1:66324554-66324573 Msa0037320:intron 30.0%
GAGATCAAAACTACAAAAAC+AGG + chr1_1:66324632-66324651 None:intergenic 30.0%
AGAAGAACAATACTACAATC+AGG + chr1_1:66324760-66324779 None:intergenic 30.0%
TCAGCAACCTATATTATTCA+TGG + chr1_1:66324846-66324865 None:intergenic 30.0%
TGATGAAGAAACACGAAATA+TGG - chr1_1:66324863-66324882 Msa0037320:CDS 30.0%
! ATCAAACTGTTGATGAATTC+TGG - chr1_1:66325342-66325361 Msa0037320:intron 30.0%
!! TTTACTTTCTTCGATTTGGA+TGG - chr1_1:66325485-66325504 Msa0037320:intron 30.0%
TTCTGCTTAGAAAATGTCAT+AGG - chr1_1:66325695-66325714 Msa0037320:intron 30.0%
!! CCCTAATTTGTCATAGTTTT+TGG - chr1_1:66325722-66325741 Msa0037320:intron 30.0%
!!! CATAGTTTTTGGTCATGTTT+AGG - chr1_1:66325733-66325752 Msa0037320:intron 30.0%
CACATAAAGCAATAAGAATC+GGG + chr1_1:66326050-66326069 None:intergenic 30.0%
GCACATAAAGCAATAAGAAT+CGG + chr1_1:66326051-66326070 None:intergenic 30.0%
! GAAATTTAAGACTATTAGGG+AGG - chr1_1:66326091-66326110 Msa0037320:five_prime_UTR 30.0%
TATCTATAGCAGCAAAACTT+TGG + chr1_1:66326142-66326161 None:intergenic 30.0%
!! TCAGCTTTAATTCTAGAGTA+AGG - chr1_1:66326286-66326305 Msa0037320:five_prime_UTR 30.0%
!! CAGCTTTAATTCTAGAGTAA+GGG - chr1_1:66326287-66326306 Msa0037320:five_prime_UTR 30.0%
! TTGGTCATCTTTTATTCTAC+AGG - chr1_1:66326411-66326430 Msa0037320:five_prime_UTR 30.0%
! TGGTCATCTTTTATTCTACA+GGG - chr1_1:66326412-66326431 Msa0037320:five_prime_UTR 30.0%
GATAGTGTTATGGTCAAAGA+AGG + chr1_1:66322335-66322354 None:intergenic 35.0%
GAAGGTTATTGTAAGGTGAA+AGG + chr1_1:66322363-66322382 None:intergenic 35.0%
AATAATAGGATCGAACCTCT+GGG + chr1_1:66322475-66322494 None:intergenic 35.0%
AAATAATAGGATCGAACCTC+TGG + chr1_1:66322476-66322495 None:intergenic 35.0%
TCGTCAATTCCAACTATCTA+AGG - chr1_1:66322623-66322642 Msa0037320:CDS 35.0%
TGATTCAAGCCTTAGATAGT+TGG + chr1_1:66322635-66322654 None:intergenic 35.0%
!!! AAAGTTTCGGTTTTTGGTTC+TGG - chr1_1:66322690-66322709 Msa0037320:CDS 35.0%
!!! AAGTTTCGGTTTTTGGTTCT+GGG - chr1_1:66322691-66322710 Msa0037320:CDS 35.0%
! TTTTTGTCTTCTGATCGAGA+TGG - chr1_1:66322730-66322749 Msa0037320:CDS 35.0%
! TTTTGTCTTCTGATCGAGAT+GGG - chr1_1:66322731-66322750 Msa0037320:CDS 35.0%
GTTGAAGTTCAACGTTATCA+AGG - chr1_1:66322883-66322902 Msa0037320:CDS 35.0%
GAAGAGCAAAATCAAATACC+AGG + chr1_1:66322944-66322963 None:intergenic 35.0%
TGTACAGTACTTAGCAATTC+AGG - chr1_1:66323186-66323205 Msa0037320:intron 35.0%
GACTTCCATTTGTTTCGATA+AGG - chr1_1:66323269-66323288 Msa0037320:intron 35.0%
! TTGAGATCTCTTGGTTGATA+TGG - chr1_1:66323507-66323526 Msa0037320:CDS 35.0%
! GATAGGTCCGTAGATATTTT+TGG - chr1_1:66323572-66323591 Msa0037320:CDS 35.0%
GATGATCTGCTTGTATATGT+TGG - chr1_1:66323615-66323634 Msa0037320:CDS 35.0%
GAACAATCTTTCCTGAAAAC+TGG - chr1_1:66323807-66323826 Msa0037320:CDS 35.0%
!! AGAGATAGGAAGTATCCTAA+CGG - chr1_1:66323858-66323877 Msa0037320:intron 35.0%
ATATACAATTCTCGGTCAGT+TGG - chr1_1:66323945-66323964 Msa0037320:intron 35.0%
GGACTATTATGCACTTTACA+AGG - chr1_1:66324203-66324222 Msa0037320:intron 35.0%
GCCCATTCTTCTTCTTTAAA+TGG + chr1_1:66324279-66324298 None:intergenic 35.0%
! GCAGCTTTTTATAAGGGTTT+TGG - chr1_1:66324695-66324714 Msa0037320:CDS 35.0%
!! GCTTTTTATAAGGGTTTTGG+TGG - chr1_1:66324698-66324717 Msa0037320:CDS 35.0%
!!! CTCTCTTGTTTTCCTTCTAT+TGG - chr1_1:66324778-66324797 Msa0037320:CDS 35.0%
TATGAGAGAAGACCAATAGA+AGG + chr1_1:66324793-66324812 None:intergenic 35.0%
AGAAACACGAAATATGGTCA+TGG - chr1_1:66324869-66324888 Msa0037320:CDS 35.0%
!!! CTAGATTGCTGTTTTTCACT+TGG + chr1_1:66324927-66324946 None:intergenic 35.0%
TGATGATTGAAGTCAAAGCT+GGG + chr1_1:66324972-66324991 None:intergenic 35.0%
! TTGATGATTGAAGTCAAAGC+TGG + chr1_1:66324973-66324992 None:intergenic 35.0%
AAAGAAACATCTCTGCATCT+TGG + chr1_1:66325211-66325230 None:intergenic 35.0%
CATGCATATATGAATAGCAC+TGG - chr1_1:66325266-66325285 Msa0037320:intron 35.0%
TCTTTCTCTCTAACAAATCC+AGG - chr1_1:66325413-66325432 Msa0037320:intron 35.0%
ACAAATCCAGGTATAGTCAT+TGG - chr1_1:66325425-66325444 Msa0037320:intron 35.0%
!! GTTTTTGAGCCAATTTCAAG+TGG - chr1_1:66325669-66325688 Msa0037320:intron 35.0%
! TGATTTTCAGTGCTTTCAGT+AGG + chr1_1:66325784-66325803 None:intergenic 35.0%
!! GGTAGGTATTGAATCAACAA+AGG + chr1_1:66325860-66325879 None:intergenic 35.0%
CTGAAAATCCCTTGGTAAAT+CGG - chr1_1:66325896-66325915 Msa0037320:CDS 35.0%
TGAAAATCCCTTGGTAAATC+GGG - chr1_1:66325897-66325916 Msa0037320:CDS 35.0%
CAATAAGAATCGGGAAGAAA+AGG + chr1_1:66326041-66326060 None:intergenic 35.0%
TTGCTTTATGTGCTTTCTTG+TGG - chr1_1:66326058-66326077 Msa0037320:five_prime_UTR 35.0%
TGCTTTATGTGCTTTCTTGT+GGG - chr1_1:66326059-66326078 Msa0037320:five_prime_UTR 35.0%
TTCAACTCAAGGTAAGGTTT+AGG - chr1_1:66326252-66326271 Msa0037320:five_prime_UTR 35.0%
TAGTGAGTTTGTGAGCTTGT+TGG + chr1_1:66322237-66322256 None:intergenic 40.0%
TGGAAGGTTCCTACAAAATG+AGG + chr1_1:66322295-66322314 None:intergenic 40.0%
AAGAAGGAAGCTAAGGTAAG+TGG + chr1_1:66322319-66322338 None:intergenic 40.0%
ATGGTCAAAGAAGGAAGCTA+AGG + chr1_1:66322326-66322345 None:intergenic 40.0%
!!! TTTTTGGTTCTGGGTAATCG+AGG - chr1_1:66322700-66322719 Msa0037320:CDS 40.0%
!!! TTTTGGTTCTGGGTAATCGA+GGG - chr1_1:66322701-66322720 Msa0037320:CDS 40.0%
! TTCTGCTGATTGTTTCAGTG+AGG - chr1_1:66322772-66322791 Msa0037320:CDS 40.0%
AGGAAACTGATGTGTACAAG+TGG - chr1_1:66322903-66322922 Msa0037320:CDS 40.0%
GGAAACTGATGTGTACAAGT+GGG - chr1_1:66322904-66322923 Msa0037320:CDS 40.0%
CAAATACCAGGTAAATCCTC+AGG + chr1_1:66322932-66322951 None:intergenic 40.0%
CAAATGGAAGTCAACTCTTG+AGG + chr1_1:66323261-66323280 None:intergenic 40.0%
! ATTGGTGTTTATTCGATGGG+TGG - chr1_1:66323355-66323374 Msa0037320:CDS 40.0%
AACTCGTACAAACAGATTCG+CGG + chr1_1:66323383-66323402 None:intergenic 40.0%
TGGTGATCAGTCTTACATCT+AGG + chr1_1:66323426-66323445 None:intergenic 40.0%
AGTTTCCTTCAGTGCATGAT+AGG - chr1_1:66323555-66323574 Msa0037320:CDS 40.0%
CTTAAGCTCATCTTCATCCA+TGG + chr1_1:66324048-66324067 None:intergenic 40.0%
TAAGACATGCCGTGATGTTA+AGG - chr1_1:66324064-66324083 Msa0037320:intron 40.0%
!! GGTTTTCAAGAAAAGTGGAC+CGG - chr1_1:66324224-66324243 Msa0037320:intron 40.0%
!! GTTTTCAAGAAAAGTGGACC+GGG - chr1_1:66324225-66324244 Msa0037320:intron 40.0%
CATAACCATTCACATGTTGC+TGG + chr1_1:66324461-66324480 None:intergenic 40.0%
!! TGGTTATGTTGACTTTCCTC+AGG - chr1_1:66324473-66324492 Msa0037320:CDS 40.0%
!!! CTTTTTTGTTGTTGCGGGTA+GGG - chr1_1:66324559-66324578 Msa0037320:intron 40.0%
!!! TTTTTTGTTGTTGCGGGTAG+GGG - chr1_1:66324560-66324579 Msa0037320:intron 40.0%
CATGGAAAAATGTCTGTCAG+CGG + chr1_1:66324828-66324847 None:intergenic 40.0%
GGTCATGGATCAATTCTATG+AGG - chr1_1:66324884-66324903 Msa0037320:CDS 40.0%
ACTTGGATCAGGGAATATCA+TGG + chr1_1:66324910-66324929 None:intergenic 40.0%
!!! GCTGTTTTTCACTTGGATCA+GGG + chr1_1:66324920-66324939 None:intergenic 40.0%
!!! TGCTGTTTTTCACTTGGATC+AGG + chr1_1:66324921-66324940 None:intergenic 40.0%
TCAACACATCTTCAAACTGG+AGG + chr1_1:66325172-66325191 None:intergenic 40.0%
CACTCAACACATCTTCAAAC+TGG + chr1_1:66325175-66325194 None:intergenic 40.0%
AACATCTCTGCATCTTGGTA+AGG + chr1_1:66325206-66325225 None:intergenic 40.0%
GATGCAGAGATGTTTCTTTG+TGG - chr1_1:66325212-66325231 Msa0037320:intron 40.0%
TTTCTTCGTTAATAGACCCC+AGG + chr1_1:66325238-66325257 None:intergenic 40.0%
!! TTGATTTGCGTCTTCTGGAT+TGG + chr1_1:66325327-66325346 None:intergenic 40.0%
!! ACAGTTTGATTTGCGTCTTC+TGG + chr1_1:66325332-66325351 None:intergenic 40.0%
AAGCTACAATGTTGCTCAAC+TGG - chr1_1:66325451-66325470 Msa0037320:intron 40.0%
TTCAAAGCCCGATTTACCAA+GGG + chr1_1:66325907-66325926 None:intergenic 40.0%
ATTCAAAGCCCGATTTACCA+AGG + chr1_1:66325908-66325927 None:intergenic 40.0%
GCTTTCTTGTGGGTTTCTAT+TGG - chr1_1:66326069-66326088 Msa0037320:five_prime_UTR 40.0%
! TCTAGAGTAAGGGCTTGTAT+CGG - chr1_1:66326297-66326316 Msa0037320:five_prime_UTR 40.0%
ACCAAAACTTGATACTACGC+GGG + chr1_1:66326396-66326415 None:intergenic 40.0%
GACCAAAACTTGATACTACG+CGG + chr1_1:66326397-66326416 None:intergenic 40.0%
CTAGTCACTACCTCACTCAA+AGG - chr1_1:66322254-66322273 Msa0037320:three_prime_UTR 45.0%
TGATTCAGTGCCTTTGAGTG+AGG + chr1_1:66322267-66322286 None:intergenic 45.0%
AGCTAAGGTAAGTGGTTGGA+AGG + chr1_1:66322311-66322330 None:intergenic 45.0%
AGGAAGCTAAGGTAAGTGGT+TGG + chr1_1:66322315-66322334 None:intergenic 45.0%
GTTGGATGAAAGCGAAAACC+TGG + chr1_1:66322812-66322831 None:intergenic 45.0%
TCGCTTTCATCCAACAGATG+AGG - chr1_1:66322817-66322836 Msa0037320:CDS 45.0%
TCATCCAACAGATGAGGAGT+TGG - chr1_1:66322823-66322842 Msa0037320:CDS 45.0%
ATCACCAACTCCTCATCTGT+TGG + chr1_1:66322830-66322849 None:intergenic 45.0%
TGTCAATGAACCCCACAAAG+GGG + chr1_1:66323457-66323476 None:intergenic 45.0%
GTGTCAATGAACCCCACAAA+GGG + chr1_1:66323458-66323477 None:intergenic 45.0%
AGTGTCAATGAACCCCACAA+AGG + chr1_1:66323459-66323478 None:intergenic 45.0%
TGGGGTATGTTGAGATCTCT+TGG - chr1_1:66323498-66323517 Msa0037320:CDS 45.0%
! CTCTTGGTTGATATGGTCAG+TGG - chr1_1:66323514-66323533 Msa0037320:CDS 45.0%
CTTTCCTGAAAACTGGAGAC+AGG - chr1_1:66323814-66323833 Msa0037320:CDS 45.0%
! ATTGCCTGTCTCCAGTTTTC+AGG + chr1_1:66323821-66323840 None:intergenic 45.0%
TGAAAACTGGAGACAGGCAA+TGG - chr1_1:66323820-66323839 Msa0037320:CDS 45.0%
!! GATAGGAAGTATCCTAACGG+TGG - chr1_1:66323861-66323880 Msa0037320:intron 45.0%
TCTAGTCGAGCAACTAGACA+TGG - chr1_1:66323888-66323907 Msa0037320:intron 45.0%
TAGTGGTGAGCGAACTGATT+GGG - chr1_1:66324007-66324026 Msa0037320:intron 45.0%
GGTTATGCATGAGTACACCA+TGG - chr1_1:66324028-66324047 Msa0037320:intron 45.0%
CCATACTGTTCACCGTTCTT+AGG + chr1_1:66324252-66324271 None:intergenic 45.0%
CCTAAGAACGGTGAACAGTA+TGG - chr1_1:66324249-66324268 Msa0037320:CDS 45.0%
TGTAAATTCAGTTGACCGGG+AGG - chr1_1:66324323-66324342 Msa0037320:CDS 45.0%
CATTCACATGTTGCTGGTCA+AGG + chr1_1:66324455-66324474 None:intergenic 45.0%
CTTGACCAGCAACATGTGAA+TGG - chr1_1:66324453-66324472 Msa0037320:CDS 45.0%
CCTACCCGCAACAACAAAAA+AGG + chr1_1:66324561-66324580 None:intergenic 45.0%
!!! CCTTTTTTGTTGTTGCGGGT+AGG - chr1_1:66324558-66324577 Msa0037320:intron 45.0%
!!! TTTTTGTTGTTGCGGGTAGG+GGG - chr1_1:66324561-66324580 Msa0037320:intron 45.0%
!! GTGTATTTCTGAAGCACCTG+AGG - chr1_1:66325010-66325029 Msa0037320:intron 45.0%
TCCACTCCGAACATTCAAAG+CGG - chr1_1:66325038-66325057 Msa0037320:intron 45.0%
! GAGCTTGTCTTTTACGAGGA+AGG - chr1_1:66325065-66325084 Msa0037320:intron 45.0%
! CTTTTACGAGGAAGGCTTCT+TGG - chr1_1:66325073-66325092 Msa0037320:intron 45.0%
AGAGATGTTTCTTTGTGGCC+TGG - chr1_1:66325217-66325236 Msa0037320:intron 45.0%
GAGATGTTTCTTTGTGGCCT+GGG - chr1_1:66325218-66325237 Msa0037320:intron 45.0%
AGATGTTTCTTTGTGGCCTG+GGG - chr1_1:66325219-66325238 Msa0037320:intron 45.0%
! CTTCTGGATTGGACAACAAC+TGG + chr1_1:66325316-66325335 None:intergenic 45.0%
AGTCCAGCTGAAGGTTATGA+TGG - chr1_1:66325389-66325408 Msa0037320:intron 45.0%
GAACCATCATAACCTTCAGC+TGG + chr1_1:66325395-66325414 None:intergenic 45.0%
CTTGTGCCAATGACTATACC+TGG + chr1_1:66325434-66325453 None:intergenic 45.0%
GAGCTCAGCAGAAATGAGAT+GGG + chr1_1:66325523-66325542 None:intergenic 45.0%
GCAGAAGAGCCACTTGAAAT+TGG + chr1_1:66325681-66325700 None:intergenic 45.0%
TAGATTCTCCTCAGCTCTGT+GGG - chr1_1:66325834-66325853 Msa0037320:CDS 45.0%
ATCAGCTGCTGAAAATCCCT+TGG - chr1_1:66325888-66325907 Msa0037320:CDS 45.0%
! ATCGAATGTCTAGCTTCAGC+AGG - chr1_1:66325926-66325945 Msa0037320:CDS 45.0%
! TCGAATGTCTAGCTTCAGCA+GGG - chr1_1:66325927-66325946 Msa0037320:CDS 45.0%
ACCTGCAGCAATGTTGTTGT+CGG + chr1_1:66325968-66325987 None:intergenic 45.0%
ACTGCAACTATGAAGAGAGC+AGG - chr1_1:66325997-66326016 Msa0037320:five_prime_UTR 45.0%
TATGAAGAGAGCAGGCAGAA+AGG - chr1_1:66326005-66326024 Msa0037320:five_prime_UTR 45.0%
ATGAAGAGAGCAGGCAGAAA+GGG - chr1_1:66326006-66326025 Msa0037320:five_prime_UTR 45.0%
! TCCCGCGTAGTATCAAGTTT+TGG - chr1_1:66326392-66326411 Msa0037320:five_prime_UTR 45.0%
GGTACGAGGATTCGAGGATT+AGG + chr1_1:66322454-66322473 None:intergenic 50.0%
TCTTCTGATCGAGATGGGTG+CGG - chr1_1:66322736-66322755 Msa0037320:CDS 50.0%
TGTGTACAAGTGGGATCCTG+AGG - chr1_1:66322913-66322932 Msa0037320:CDS 50.0%
TGGGATCCTGAGGATTTACC+TGG - chr1_1:66322923-66322942 Msa0037320:CDS 50.0%
AATGAACCCCACAAAGGGGA+GGG + chr1_1:66323453-66323472 None:intergenic 50.0%
ACGGACCTATCATGCACTGA+AGG + chr1_1:66323563-66323582 None:intergenic 50.0%
!! GGAAGTATCCTAACGGTGGA+AGG - chr1_1:66323865-66323884 Msa0037320:intron 50.0%
GAGCAACTAGACATGGCTAC+TGG - chr1_1:66323895-66323914 Msa0037320:intron 50.0%
CATGGCTACTGGAAAGCTAC+TGG - chr1_1:66323906-66323925 Msa0037320:intron 50.0%
TATCTTGGCAGAGCTCCTAG+TGG - chr1_1:66323990-66324009 Msa0037320:intron 50.0%
CAATCAGTTCGCTCACCACT+AGG + chr1_1:66324008-66324027 None:intergenic 50.0%
CTAGTGGTGAGCGAACTGAT+TGG - chr1_1:66324006-66324025 Msa0037320:intron 50.0%
TGTTCACCGTTCTTAGGACC+CGG + chr1_1:66324246-66324265 None:intergenic 50.0%
ACATTGTCAACAGCAGCCTC+TGG + chr1_1:66324351-66324370 None:intergenic 50.0%
ACATGTTGCTGGTCAAGGAC+AGG + chr1_1:66324450-66324469 None:intergenic 50.0%
CCACTCCGAACATTCAAAGC+GGG - chr1_1:66325039-66325058 Msa0037320:intron 50.0%
CACTCCGAACATTCAAAGCG+GGG - chr1_1:66325040-66325059 Msa0037320:intron 50.0%
! TCCTCCCCGCTTTGAATGTT+CGG + chr1_1:66325047-66325066 None:intergenic 50.0%
! GGAGGAGCTTGTCTTTTACG+AGG - chr1_1:66325061-66325080 Msa0037320:intron 50.0%
ATAACCTTCAGCTGGACTGC+GGG + chr1_1:66325387-66325406 None:intergenic 50.0%
CATAACCTTCAGCTGGACTG+CGG + chr1_1:66325388-66325407 None:intergenic 50.0%
CGAGCTCAGCAGAAATGAGA+TGG + chr1_1:66325524-66325543 None:intergenic 50.0%
TCGTCACAGTTTACTGCTCC+TGG - chr1_1:66325541-66325560 Msa0037320:intron 50.0%
! GGTGTTGTGTGTGACTCTGT+CGG - chr1_1:66325754-66325773 Msa0037320:intron 50.0%
GTAGATTCTCCTCAGCTCTG+TGG - chr1_1:66325833-66325852 Msa0037320:CDS 50.0%
! GGATTTTCAGCAGCTGATGC+AGG + chr1_1:66325886-66325905 None:intergenic 50.0%
GCAGCAATGTTGTTGTCGGT+GGG + chr1_1:66325964-66325983 None:intergenic 50.0%
TGCAGCAATGTTGTTGTCGG+TGG + chr1_1:66325965-66325984 None:intergenic 50.0%
ACCGACAACAACATTGCTGC+AGG - chr1_1:66325964-66325983 Msa0037320:exon 50.0%
TGAAGAGAGCAGGCAGAAAG+GGG - chr1_1:66326007-66326026 Msa0037320:five_prime_UTR 50.0%
GATCGAGATGGGTGCGGTTT+CGG - chr1_1:66322742-66322761 Msa0037320:CDS 55.0%
ATGAACCCCACAAAGGGGAG+GGG + chr1_1:66323452-66323471 None:intergenic 55.0%
CAATGAACCCCACAAAGGGG+AGG + chr1_1:66323454-66323473 None:intergenic 55.0%
CGACTAGACCTTCCACCGTT+AGG + chr1_1:66323876-66323895 None:intergenic 55.0%
AGTGGACCGGGTCCTAAGAA+CGG - chr1_1:66324237-66324256 Msa0037320:CDS 55.0%
TTCGGAGTGGAAGTGACCTC+AGG + chr1_1:66325029-66325048 None:intergenic 55.0%
! CCCGCTTTGAATGTTCGGAG+TGG + chr1_1:66325042-66325061 None:intergenic 55.0%
TCCGAACATTCAAAGCGGGG+AGG - chr1_1:66325043-66325062 Msa0037320:intron 55.0%
GCGCGTGGCAGAAACCTTTA+TGG - chr1_1:66325579-66325598 Msa0037320:intron 55.0%
AACAAAGGCCCACAGAGCTG+AGG + chr1_1:66325845-66325864 None:intergenic 55.0%
TTCAGCAGCTGATGCAGGAG+TGG + chr1_1:66325881-66325900 None:intergenic 55.0%
GAAGAGAGCAGGCAGAAAGG+GGG - chr1_1:66326008-66326027 Msa0037320:five_prime_UTR 55.0%
CCTCTGGGTACGAGGATTCG+AGG + chr1_1:66322460-66322479 None:intergenic 60.0%
CCTCGAATCCTCGTACCCAG+AGG - chr1_1:66322457-66322476 Msa0037320:three_prime_UTR 60.0%
GGATCGAACCTCTGGGTACG+AGG + chr1_1:66322468-66322487 None:intergenic 60.0%
GAGGTGATGTCGTCGATGCC+AGG - chr1_1:66322791-66322810 Msa0037320:CDS 60.0%
ACCAGTTCCCCTCCCCTTTG+TGG - chr1_1:66323442-66323461 Msa0037320:CDS 60.0%
CCAGTTCCCCTCCCCTTTGT+GGG - chr1_1:66323443-66323462 Msa0037320:CDS 60.0%
CAGTTCCCCTCCCCTTTGTG+GGG - chr1_1:66323444-66323463 Msa0037320:CDS 60.0%
AGTTGACCGGGAGGTTCCAG+AGG - chr1_1:66324332-66324351 Msa0037320:CDS 60.0%
CCAGGCAGATCACACACCTG+AGG + chr1_1:66324492-66324511 None:intergenic 60.0%
CCTCAGGTGTGTGATCTGCC+TGG - chr1_1:66324489-66324508 Msa0037320:CDS 60.0%
! TTGTTGTTGCGGGTAGGGGG+AGG - chr1_1:66324564-66324583 Msa0037320:intron 60.0%
AACACCCGCAGTCCAGCTGA+AGG - chr1_1:66325380-66325399 Msa0037320:intron 60.0%
! CGCAAGTTGGCGTGTCAACC+AGG + chr1_1:66325562-66325581 None:intergenic 60.0%
TTGACACGCCAACTTGCGCG+TGG - chr1_1:66325564-66325583 Msa0037320:intron 60.0%
GGTTTCTGCCACGCGCAAGT+TGG + chr1_1:66325575-66325594 None:intergenic 60.0%
GCAGCTGATGCAGGAGTGGT+AGG + chr1_1:66325877-66325896 None:intergenic 60.0%
CCCACAAAGGGGAGGGGAAC+TGG + chr1_1:66323446-66323465 None:intergenic 65.0%
!! CAGCAGCCTCTGGAACCTCC+CGG + chr1_1:66324341-66324360 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66322232 66326495 66322232 ID=Msa0037320;Name=Msa0037320
chr1_1 mRNA 66322232 66326495 66322232 ID=Msa0037320-mRNA-1;Parent=Msa0037320;Name=Msa0037320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=517|1|1|1|1|1|5|367|571
chr1_1 exon 66322232 66322972 66322232 ID=Msa0037320-mRNA-1:exon:21428;Parent=Msa0037320-mRNA-1
chr1_1 exon 66323293 66323869 66323293 ID=Msa0037320-mRNA-1:exon:21427;Parent=Msa0037320-mRNA-1
chr1_1 exon 66324233 66324523 66324233 ID=Msa0037320-mRNA-1:exon:21426;Parent=Msa0037320-mRNA-1
chr1_1 exon 66324642 66324919 66324642 ID=Msa0037320-mRNA-1:exon:21425;Parent=Msa0037320-mRNA-1
chr1_1 exon 66325783 66326495 66325783 ID=Msa0037320-mRNA-1:exon:21424;Parent=Msa0037320-mRNA-1
chr1_1 five_prime_UTR 66325979 66326495 66325979 ID=Msa0037320-mRNA-1:five_prime_utr;Parent=Msa0037320-mRNA-1
chr1_1 CDS 66325783 66325978 66325783 ID=Msa0037320-mRNA-1:cds;Parent=Msa0037320-mRNA-1
chr1_1 CDS 66324642 66324919 66324642 ID=Msa0037320-mRNA-1:cds;Parent=Msa0037320-mRNA-1
chr1_1 CDS 66324233 66324523 66324233 ID=Msa0037320-mRNA-1:cds;Parent=Msa0037320-mRNA-1
chr1_1 CDS 66323293 66323869 66323293 ID=Msa0037320-mRNA-1:cds;Parent=Msa0037320-mRNA-1
chr1_1 CDS 66322599 66322972 66322599 ID=Msa0037320-mRNA-1:cds;Parent=Msa0037320-mRNA-1
chr1_1 three_prime_UTR 66322232 66322598 66322232 ID=Msa0037320-mRNA-1:three_prime_utr;Parent=Msa0037320-mRNA-1
Gene Sequence

>Msa0037320

ATGGGTGCGGTTTCGGAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCGATGCCAGGTTTTCGCTTTCATCCAACAGATGAGGAGTTGGTGATGTATTATCTGAAAAGGAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTTATCAAGGAAACTGATGTGTACAAGTGGGATCCTGAGGATTTACCTGAACAATCTTTCCTGAAAACTGGAGACAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAACGGTGGAAGGTCTAGTCGAGCAACTAGACATGGCTACTGGAAAGCTACTGGAAAAGATCGAAATGTGATATACAATTCTCGGTCAGTTGGAGTGAAAAAGACACTTGTTTTCTATCTTGGCAGAGCTCCTAGTGGTGAGCGAACTGATTGGGTTATGCATGAGTACACCATGGATGAAGATGAGCTTAAGACATGCCGTGATGTTAAGGACTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCGGGTCCTAAGAACGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGAATGGGCAGATGACGATGTTGTAGATTTTAATGTAAATTCAGTTGACCGGGAGGTTCCAGAGGCTGCTGTTGACAATGTTATTGATCAGCATCAGCTGCAGCCGTTGTTTGATGATGAAATTGATGAAATCATTAAAGGGATGCTTGATGTTGAGCCTGTCCTTGACCAGCAACATGTGAATGGTTATGTTGACTTTCCTCAGGTTGCTGATGAAGAAACACGAAATATGGTCATGGATCAATTCTATGAGGCCATGATATTCCCTGATCCAAGTGAAAAACAGCAATCTAGCAGTCAGCTTTATGATGCGCAGCCCAGCTTTGACTTCAATCATCAATCAGTTGATTCTCACTTGTGTATTTCTGAAGCACCTGAGGTCACTTCCACTCCGAACATTCAAAGCGGGGAGGAGCTTGTCTTTTACGAGGAAGGCTTCTTGGAAATTAATGATCTCATTGATACCGAATCTACATTTTCAAATACAGATAAGCTTAACAACGATCTCATTGAGAACCTCCAGTTTGAAGATGTGTTGAGTGAATTTGATCCTTACCAAGATGCAGAGATGTTTCTTTGTGGCCTGGGGTCTATTAACGAAGAAACAGTTTCACATGCATATATGAATAGCACTGGCAGCAATATTGAAAATCAGAGTTACCAGTTGTTGTCCAATCCAGAAGACGCAAATCAAACTGTTGATGAATTCTGGATGCATGTTGAAAGAAACACCCGCAGTCCAGCTGAAGGTTATGATGGTTCTTTCTCTCTAACAAATCCAGGTGTTGTGTGTGACTCTGTCGGCTTTCCTACTGAAAGCACTGAAAATCAAAGAAGCACTGTAGAAGATGTTAAAACAAGTAGATTCTCCTCAGCTCTGTGGGCCTTTGTTGATTCAATACCTACCACTCCTGCATCAGCTGCTGAAAATCCCTTGGTAAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAAGATCAAGCCCACCGACAACAACATTGCTGCAGGTAATAATGACACTGCAACTATGAAGAGAGCAGGCAGAAAGGGGGTCTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGGTGCGTCTCCCCTTGA
Protein sequence

>Msa0037320

MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVIKETDVYKWDPEDLPEQSFLKTGDRQWFFFCHRDRKYPNGGRSSRATRHGYWKATGKDRNVIYNSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTMDEDELKTCRDVKDYYALYKVFKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNVNSVDREVPEAAVDNVIDQHQLQPLFDDEIDEIIKGMLDVEPVLDQQHVNGYVDFPQVADEETRNMVMDQFYEAMIFPDPSEKQQSSSQLYDAQPSFDFNHQSVDSHLCISEAPEVTSTPNIQSGEELVFYEEGFLEINDLIDTESTFSNTDKLNNDLIENLQFEDVLSEFDPYQDAEMFLCGLGSINEETVSHAYMNSTGSNIENQSYQLLSNPEDANQTVDEFWMHVERNTRSPAEGYDGSFSLTNPGVVCDSVGFPTESTENQRSTVEDVKTSRFSSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSRVKIKPTDNNIAAGNNDTATMKRAGRKGVSFLFFPILIALCAFLWVSIGNLRLLGRCVSP*