Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310490 | XP_003593210.1 | 92.347 | 196 | 11 | 1 | 1 | 196 | 183 | 374 | 5.02e-126 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012260 | Msa0310490 | 0.806420 | 8.297118e-50 | -8.615850e-47 |
| Msa0030030 | Msa0310490 | 0.803916 | 2.773660e-49 | -8.615850e-47 |
| Msa0039200 | Msa0310490 | 0.802380 | 5.767422e-49 | -8.615850e-47 |
| Msa0060970 | Msa0310490 | 0.812027 | 5.211102e-51 | -8.615850e-47 |
| Msa0077330 | Msa0310490 | 0.807226 | 5.605020e-50 | -8.615850e-47 |
| Msa0086820 | Msa0310490 | 0.801576 | 8.435053e-49 | -8.615850e-47 |
| Msa0133670 | Msa0310490 | 0.806011 | 1.012008e-49 | -8.615850e-47 |
| Msa0133880 | Msa0310490 | 0.816418 | 5.586931e-52 | -8.615850e-47 |
| Msa0139740 | Msa0310490 | 0.805952 | 1.041081e-49 | -8.615850e-47 |
| Msa0149810 | Msa0310490 | 0.816958 | 4.229135e-52 | -8.615850e-47 |
| Msa0175720 | Msa0310490 | 0.818990 | 1.468578e-52 | -8.615850e-47 |
| Msa0175900 | Msa0310490 | 0.800579 | 1.349032e-48 | -8.615850e-47 |
| Msa0184120 | Msa0310490 | 0.803975 | 2.696927e-49 | -8.615850e-47 |
| Msa0189880 | Msa0310490 | 0.916914 | 1.003415e-85 | -8.615850e-47 |
| Msa0216010 | Msa0310490 | 0.820383 | 7.062869e-53 | -8.615850e-47 |
| Msa0216560 | Msa0310490 | 0.854963 | 8.673535e-62 | -8.615850e-47 |
| Msa0226290 | Msa0310490 | 0.801794 | 7.609977e-49 | -8.615850e-47 |
| Msa0256170 | Msa0310490 | 0.838498 | 2.774885e-57 | -8.615850e-47 |
| Msa0256430 | Msa0310490 | 0.830815 | 2.374789e-55 | -8.615850e-47 |
| Msa0288320 | Msa0310490 | 0.837677 | 4.514050e-57 | -8.615850e-47 |
| Msa0295840 | Msa0310490 | 0.859517 | 3.917199e-63 | -8.615850e-47 |
| Msa0310490 | Msa0334180 | 0.801906 | 7.219153e-49 | -8.615850e-47 |
| Msa0310490 | Msa0365150 | 0.833535 | 5.045284e-56 | -8.615850e-47 |
| Msa0310490 | Msa0369750 | 0.805628 | 1.217700e-49 | -8.615850e-47 |
| Msa0310490 | Msa0370870 | 0.809352 | 1.974663e-50 | -8.615850e-47 |
| Msa0310490 | Msa0390950 | 0.809644 | 1.708533e-50 | -8.615850e-47 |
| Msa0310490 | Msa0416990 | 0.804978 | 1.666497e-49 | -8.615850e-47 |
| Msa0310490 | Msa0417130 | 0.810667 | 1.028421e-50 | -8.615850e-47 |
| Msa0310490 | Msa0456480 | 0.831734 | 1.411594e-55 | -8.615850e-47 |
| Msa0310490 | Msa0463960 | 0.808214 | 3.457043e-50 | -8.615850e-47 |
| Msa0310490 | Msa0471790 | 0.820918 | 5.322118e-53 | -8.615850e-47 |
| Msa0310490 | Msa0473450 | 0.813782 | 2.149737e-51 | -8.615850e-47 |
| Msa0310490 | Msa0508540 | 0.835462 | 1.654586e-56 | -8.615850e-47 |
| Msa0310490 | Msa0509500 | 0.810238 | 1.272871e-50 | -8.615850e-47 |
| Msa0310490 | Msa0522120 | 0.800524 | 1.383926e-48 | -8.615850e-47 |
| Msa0310490 | Msa0558890 | 0.819491 | 1.129602e-52 | -8.615850e-47 |
| Msa0310490 | Msa0598560 | 0.820250 | 7.575901e-53 | -8.615850e-47 |
| Msa0310490 | Msa0622340 | 0.809416 | 1.912390e-50 | -8.615850e-47 |
| Msa0310490 | Msa0654060 | 0.824104 | 9.670848e-54 | -8.615850e-47 |
| Msa0310490 | Msa0662850 | 0.834293 | 3.259963e-56 | -8.615850e-47 |
| Msa0310490 | Msa0698900 | 0.802093 | 6.607621e-49 | -8.615850e-47 |
| Msa0310490 | Msa0736930 | 0.852720 | 3.836486e-61 | -8.615850e-47 |
| Msa0310490 | Msa0739610 | 0.812456 | 4.201765e-51 | -8.615850e-47 |
| Msa0310490 | Msa0766880 | 0.806992 | 6.282672e-50 | -8.615850e-47 |
| Msa0310490 | Msa0771960 | 0.824069 | 9.854985e-54 | -8.615850e-47 |
| Msa0310490 | Msa0782330 | 0.800933 | 1.142421e-48 | -8.615850e-47 |
| Msa0310490 | Msa0794040 | 0.802928 | 4.444083e-49 | -8.615850e-47 |
| Msa0310490 | Msa0796450 | 0.803549 | 3.306523e-49 | -8.615850e-47 |
| Msa0310490 | Msa0873930 | 0.802149 | 6.434126e-49 | -8.615850e-47 |
| Msa0310490 | Msa0923910 | 0.811694 | 6.157812e-51 | -8.615850e-47 |
| Msa0310490 | Msa0975970 | 0.804787 | 1.826855e-49 | -8.615850e-47 |
| Msa0310490 | Msa0978000 | 0.817898 | 2.596679e-52 | -8.615850e-47 |
| Msa0310490 | Msa0981300 | 0.804887 | 1.740517e-49 | -8.615850e-47 |
| Msa0310490 | Msa0981900 | 0.854615 | 1.093656e-61 | -8.615850e-47 |
| Msa0310490 | Msa0982590 | 0.849709 | 2.717751e-60 | -8.615850e-47 |
| Msa0310490 | Msa1016130 | 0.820742 | 5.841869e-53 | -8.615850e-47 |
| Msa0310490 | Msa1030280 | 0.822641 | 2.125349e-53 | -8.615850e-47 |
| Msa0310490 | Msa1057320 | 0.800773 | 1.231201e-48 | -8.615850e-47 |
| Msa0310490 | Msa1102180 | 0.814172 | 1.764034e-51 | -8.615850e-47 |
| Msa0310490 | Msa1102200 | 0.804017 | 2.642993e-49 | -8.615850e-47 |
| Msa0310490 | Msa1138600 | 0.800650 | 1.305001e-48 | -8.615850e-47 |
| Msa0310490 | Msa1188820 | 0.831729 | 1.414989e-55 | -8.615850e-47 |
| Msa0310490 | Msa1190990 | 0.811390 | 7.170762e-51 | -8.615850e-47 |
| Msa0310490 | Msa1218650 | 0.812010 | 5.255757e-51 | -8.615850e-47 |
| Msa0310490 | Msa1242990 | 0.809018 | 2.327742e-50 | -8.615850e-47 |
| Msa0310490 | Msa1248400 | 0.824460 | 7.977915e-54 | -8.615850e-47 |
| Msa0310490 | Msa1265250 | 0.810137 | 1.338841e-50 | -8.615850e-47 |
| Msa0310490 | Msa1306700 | 0.816420 | 5.580528e-52 | -8.615850e-47 |
| Msa0310490 | Msa1310260 | 0.800076 | 1.707874e-48 | -8.615850e-47 |
| Msa0310490 | Msa1316170 | 0.807081 | 6.017613e-50 | -8.615850e-47 |
| Msa0310490 | Msa1323440 | 0.802116 | 6.535574e-49 | -8.615850e-47 |
| Msa0310490 | Msa1327820 | 0.802088 | 6.623942e-49 | -8.615850e-47 |
| Msa0310490 | Msa1346540 | 0.838628 | 2.567973e-57 | -8.615850e-47 |
| Msa0310490 | Msa1368180 | 0.856345 | 3.425217e-62 | -8.615850e-47 |
| Msa0310490 | Msa1373590 | 0.854173 | 1.467845e-61 | -8.615850e-47 |
| Msa0310490 | Msa1385580 | 0.854352 | 1.303800e-61 | -8.615850e-47 |
| Msa0310490 | Msa1404720 | 0.832494 | 9.157762e-56 | -8.615850e-47 |
| Msa0310490 | Msa1415820 | 0.807580 | 4.715349e-50 | -8.615850e-47 |
| Msa0310490 | Msa1419110 | 0.806042 | 9.965707e-50 | -8.615850e-47 |
| Msa0310490 | Msa1422750 | 0.826004 | 3.440545e-54 | -8.615850e-47 |
| Msa0310490 | Msa1439230 | 0.804496 | 2.101079e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310490 | MtrunA17_Chr2g0279241 | 92.347 | 196 | 11 | 1 | 1 | 196 | 183 | 374 | 4.62e-130 | 370 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310490 | AT5G64230.1 | 52.717 | 184 | 84 | 2 | 10 | 192 | 197 | 378 | 1.12e-58 | 188 |
| Msa0310490 | AT3G19920.1 | 40.000 | 165 | 88 | 3 | 28 | 191 | 262 | 416 | 2.15e-33 | 123 |
| Msa0310490 | AT3G19920.2 | 40.000 | 165 | 88 | 3 | 28 | 191 | 303 | 457 | 4.45e-33 | 123 |
Find 139 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTATACCATTCATAAATT+TGG | 0.120700 | 2_4:+5321305 | Msa0310490:three_prime_UTR |
| TGGGCGGTGGCGGATAATTT+AGG | 0.162639 | 2_4:+5319444 | Msa0310490:CDS |
| TTCAAAGAAGCCAAAGATTT+TGG | 0.169588 | 2_4:+5320779 | Msa0310490:CDS |
| TTTCGCGTTCTTCCCCATTT+TGG | 0.215075 | 2_4:-5318732 | None:intergenic |
| GAGGAGGGTGTGGAGGGTGG+TGG | 0.218739 | 2_4:+5319293 | Msa0310490:CDS |
| CGAAAAGAAAATAACCAAAA+TGG | 0.222336 | 2_4:+5318718 | Msa0310490:five_prime_UTR |
| TACTGCTGATCCTCGTTTGC+AGG | 0.243765 | 2_4:+5319479 | Msa0310490:CDS |
| AGCTTTAAATGTGTGCAAAA+TGG | 0.264969 | 2_4:-5318653 | None:intergenic |
| GGGTGTGGAGGGTGGTGGGG+TGG | 0.285106 | 2_4:+5319298 | Msa0310490:CDS |
| GGAGGGTGTGGAGGGTGGTG+GGG | 0.287513 | 2_4:+5319295 | Msa0310490:CDS |
| CTCTCATTGATGCTCAATGC+TGG | 0.290296 | 2_4:-5320911 | None:intergenic |
| GAGGAGGAGGGTGTGGAGGG+TGG | 0.291263 | 2_4:+5319290 | Msa0310490:CDS |
| TGGGGCATCGATGCCATTAC+TGG | 0.294293 | 2_4:-5320891 | None:intergenic |
| AAGAACAGGTTCTTTCTCTT+TGG | 0.297051 | 2_4:+5320990 | Msa0310490:CDS |
| GCTTCGCTTGTTAAACTTGC+AGG | 0.297214 | 2_4:+5319501 | Msa0310490:CDS |
| TGGTTTAAGTGGTGGTGTTC+CGG | 0.299500 | 2_4:+5319341 | Msa0310490:CDS |
| ATCGTCTGCGCCAAAATCTT+TGG | 0.300403 | 2_4:-5320789 | None:intergenic |
| GTGGAGGGTGGTGGGGTGGA+AGG | 0.327039 | 2_4:+5319302 | Msa0310490:CDS |
| AGGAGGGTGTGGAGGGTGGT+GGG | 0.327315 | 2_4:+5319294 | Msa0310490:CDS |
| TGGTGAGGAGGAGGGTGTGG+AGG | 0.336421 | 2_4:+5319286 | Msa0310490:CDS |
| GGGCGGTGGCGGATAATTTA+GGG | 0.342904 | 2_4:+5319445 | Msa0310490:CDS |
| GTGATGGAGGAGAGTGGTAT+AGG | 0.357153 | 2_4:+5319262 | Msa0310490:five_prime_UTR |
| AATTGGCAGCGGAGTTGGTT+TGG | 0.367956 | 2_4:+5319370 | Msa0310490:CDS |
| GAAAAGAAAATAACCAAAAT+GGG | 0.374894 | 2_4:+5318719 | Msa0310490:five_prime_UTR |
| GTGGAAGGTGAAGGGAGGTG+AGG | 0.381406 | 2_4:+5319317 | Msa0310490:CDS |
| GGATGATGAAACGGAGGGTT+TGG | 0.381540 | 2_4:-5318886 | None:intergenic |
| GGATGGTGAGGAGGAGGGTG+TGG | 0.384248 | 2_4:+5319283 | Msa0310490:exon |
| GCATAACATGATTGGAGGTT+TGG | 0.384676 | 2_4:-5321049 | None:intergenic |
| GGTGAAAAGGGAAGAGATTA+GGG | 0.395429 | 2_4:-5318804 | None:intergenic |
| GAATGAAACGGAGGAGGAAG+AGG | 0.397994 | 2_4:-5318919 | None:intergenic |
| GTTGCTTTGTCTTCAGCGTT+TGG | 0.402044 | 2_4:+5319175 | Msa0310490:five_prime_UTR |
| TGGTGTTCCGGCGGAGAAAT+TGG | 0.402368 | 2_4:+5319353 | Msa0310490:CDS |
| GGTGAGGAGGAGGGTGTGGA+GGG | 0.415395 | 2_4:+5319287 | Msa0310490:CDS |
| TGGTGAAAAGGGAAGAGATT+AGG | 0.417039 | 2_4:-5318805 | None:intergenic |
| GGTATAGGATGGTGAGGAGG+AGG | 0.417760 | 2_4:+5319277 | Msa0310490:exon |
| CACACATTTAAAGCTAGAAA+AGG | 0.421159 | 2_4:+5318661 | Msa0310490:five_prime_UTR |
| CATGGCTGCCATTGTTGTGC+AGG | 0.422978 | 2_4:+5320867 | Msa0310490:CDS |
| GGTGGTGGGGTGGAAGGTGA+AGG | 0.423207 | 2_4:+5319308 | Msa0310490:CDS |
| TTGCTTTGTCTTCAGCGTTT+GGG | 0.424552 | 2_4:+5319176 | Msa0310490:five_prime_UTR |
| TATGAATGGTATAAGTATAA+CGG | 0.426115 | 2_4:-5321298 | None:intergenic |
| CTTGCTGTTTAAGTTTAATA+CGG | 0.427939 | 2_4:+5321359 | Msa0310490:three_prime_UTR |
| CGAAGCAGTTCGATCGTTAA+CGG | 0.429812 | 2_4:+5319093 | Msa0310490:five_prime_UTR |
| TACATTTCCAAATTTATGAA+TGG | 0.435152 | 2_4:-5321312 | None:intergenic |
| TCTCATTGATGCTCAATGCT+GGG | 0.437571 | 2_4:-5320910 | None:intergenic |
| GTGGGGTGGAAGGTGAAGGG+AGG | 0.443740 | 2_4:+5319312 | Msa0310490:CDS |
| CAACGGCGGTGGTGGTGAAA+AGG | 0.444067 | 2_4:-5318817 | None:intergenic |
| GAATGTCAAAGAACTATCAT+AGG | 0.446139 | 2_4:+5321235 | Msa0310490:three_prime_UTR |
| TGGAAGGTGAAGGGAGGTGA+GGG | 0.448134 | 2_4:+5319318 | Msa0310490:CDS |
| GGCTGAGTTGGAGAGGGTGT+TGG | 0.448458 | 2_4:+5320934 | Msa0310490:CDS |
| CATCAATGAGAGGGCTGAGT+TGG | 0.451437 | 2_4:+5320922 | Msa0310490:CDS |
| AAGTTCTAAGTTATATCAAC+AGG | 0.453490 | 2_4:+5321195 | Msa0310490:three_prime_UTR |
| GGAGAAATTGGCAGCGGAGT+TGG | 0.458127 | 2_4:+5319365 | Msa0310490:CDS |
| TGTAGTTGACAGAGAAGGAG+AGG | 0.458499 | 2_4:-5318856 | None:intergenic |
| GAGGGTGAACAAGGTGATGG+AGG | 0.472780 | 2_4:+5319249 | Msa0310490:five_prime_UTR |
| AGGATGAGCAATGTGTAAAA+TGG | 0.472912 | 2_4:-5321018 | None:intergenic |
| GTTCGGAGGAGCGGCGGAAG+TGG | 0.474833 | 2_4:-5318782 | None:intergenic |
| GGAAAGCATTATAGAGGGGT+TGG | 0.475155 | 2_4:+5320955 | Msa0310490:CDS |
| GTTGACAGAGAAGGAGAGGA+AGG | 0.478361 | 2_4:-5318852 | None:intergenic |
| GGTGGCGGAGAGAGAGATCA+AGG | 0.484055 | 2_4:+5319225 | Msa0310490:five_prime_UTR |
| AGGAGCGGCGGAAGTGGTAG+TGG | 0.486154 | 2_4:-5318776 | None:intergenic |
| TCCAATCATGTTATGCTCGC+TGG | 0.490686 | 2_4:+5321056 | Msa0310490:CDS |
| GTATAGGATGGTGAGGAGGA+GGG | 0.494671 | 2_4:+5319278 | Msa0310490:exon |
| CTGATGAAGCTCTTCAGAGA+TGG | 0.495288 | 2_4:+5319424 | Msa0310490:CDS |
| GGAGGTGAGGGTGGTTTAAG+TGG | 0.502354 | 2_4:+5319330 | Msa0310490:CDS |
| GGAGGAAGAGGTAGAAAGTG+AGG | 0.503057 | 2_4:-5318907 | None:intergenic |
| AGAAAGTGAGGATGATGAAA+CGG | 0.504841 | 2_4:-5318895 | None:intergenic |
| CTTTGTCTTCAGCGTTTGGG+AGG | 0.507256 | 2_4:+5319179 | Msa0310490:five_prime_UTR |
| AAGAAGGAATGAAACGGAGG+AGG | 0.508172 | 2_4:-5318925 | None:intergenic |
| GGAACAAGCGAAGCAAGAAC+AGG | 0.510730 | 2_4:+5320976 | Msa0310490:CDS |
| AGAGAAGGAGAGGAAGGTGG+TGG | 0.511463 | 2_4:-5318846 | None:intergenic |
| AACGGCGGTGGTGGTGAAAA+GGG | 0.514502 | 2_4:-5318816 | None:intergenic |
| GTGGTGGGGTGGAAGGTGAA+GGG | 0.517185 | 2_4:+5319309 | Msa0310490:CDS |
| TCTTCAGAGATGGGCGGTGG+CGG | 0.518241 | 2_4:+5319434 | Msa0310490:CDS |
| ACCAGCGAGCATAACATGAT+TGG | 0.520683 | 2_4:-5321057 | None:intergenic |
| GAGAGTGGTATAGGATGGTG+AGG | 0.520943 | 2_4:+5319271 | Msa0310490:exon |
| ACAACTACTAGAGCTGAAGT+TGG | 0.523016 | 2_4:-5321169 | None:intergenic |
| ACATTCAAGAAATATTTAAG+TGG | 0.523311 | 2_4:-5321218 | None:intergenic |
| GAGTTTGTAGTTGACAGAGA+AGG | 0.525446 | 2_4:-5318861 | None:intergenic |
| AGCGAGCATAACATGATTGG+AGG | 0.527880 | 2_4:-5321054 | None:intergenic |
| TGGATCGACAAAGGTTGACT+TGG | 0.529788 | 2_4:-5318633 | None:intergenic |
| GAGATTAGGGTTCGGAGGAG+CGG | 0.531244 | 2_4:-5318791 | None:intergenic |
| GGCAGCGGAGTTGGTTTGGA+TGG | 0.531399 | 2_4:+5319374 | Msa0310490:CDS |
| GGTGTTGGAAAGCATTATAG+AGG | 0.532617 | 2_4:+5320949 | Msa0310490:CDS |
| CTCATTGATGCTCAATGCTG+GGG | 0.535606 | 2_4:-5320909 | None:intergenic |
| TGGGAGGGCGTTGAGGCAGT+TGG | 0.535862 | 2_4:+5319195 | Msa0310490:five_prime_UTR |
| AGTGGTATAGGATGGTGAGG+AGG | 0.536537 | 2_4:+5319274 | Msa0310490:exon |
| GACAGAGAAGGAGAGGAAGG+TGG | 0.536632 | 2_4:-5318849 | None:intergenic |
| TCCGCTGCCAATTTCTCCGC+CGG | 0.537453 | 2_4:-5319360 | None:intergenic |
| CACATTGCTCATCCTCTGAC+TGG | 0.539240 | 2_4:+5321026 | Msa0310490:CDS |
| AAGGTGAAGGGAGGTGAGGG+TGG | 0.541781 | 2_4:+5319321 | Msa0310490:CDS |
| GATCAAGGAGAGGGTGAACA+AGG | 0.543520 | 2_4:+5319240 | Msa0310490:five_prime_UTR |
| CAGCGTTTGGGAGGGCGTTG+AGG | 0.545073 | 2_4:+5319188 | Msa0310490:five_prime_UTR |
| AAAGGGAAGAGATTAGGGTT+CGG | 0.546803 | 2_4:-5318799 | None:intergenic |
| TAAGTTTAATACGGTTGTTG+TGG | 0.551016 | 2_4:+5321368 | Msa0310490:three_prime_UTR |
| CAAGATGAAGCAATGCATGC+AGG | 0.557965 | 2_4:+5320823 | Msa0310490:CDS |
| CGGCGGAAGTGGTAGTGGCA+TGG | 0.558032 | 2_4:-5318771 | None:intergenic |
| TGATGAAGCTCTTCAGAGAT+GGG | 0.561498 | 2_4:+5319425 | Msa0310490:CDS |
| ATTAGGGTTCGGAGGAGCGG+CGG | 0.562847 | 2_4:-5318788 | None:intergenic |
| TTTGTCTTCAGCGTTTGGGA+GGG | 0.563106 | 2_4:+5319180 | Msa0310490:five_prime_UTR |
| TTGTTGTGCAGGGCCAGTAA+TGG | 0.566356 | 2_4:+5320878 | Msa0310490:CDS |
| AACAGCAAGAACCAACATAG+TGG | 0.577713 | 2_4:-5321345 | None:intergenic |
| GGAGAGGGTGAACAAGGTGA+TGG | 0.578772 | 2_4:+5319246 | Msa0310490:five_prime_UTR |
| AGCTCTTCAGAGATGGGCGG+TGG | 0.579015 | 2_4:+5319431 | Msa0310490:CDS |
| GTAACGAATGAACACCTTCG+AGG | 0.580463 | 2_4:-5319138 | None:intergenic |
| GGGAAGAGATTAGGGTTCGG+AGG | 0.585432 | 2_4:-5318796 | None:intergenic |
| AACAAGGTGATGGAGGAGAG+TGG | 0.587077 | 2_4:+5319256 | Msa0310490:five_prime_UTR |
| AGCATATCAAGCCACTATGT+TGG | 0.590782 | 2_4:+5321334 | Msa0310490:three_prime_UTR |
| GTGTTGGAAAGCATTATAGA+GGG | 0.592426 | 2_4:+5320950 | Msa0310490:CDS |
| GGTGAGGGTGGTTTAAGTGG+TGG | 0.593095 | 2_4:+5319333 | Msa0310490:CDS |
| AAGTGAGGATGATGAAACGG+AGG | 0.593185 | 2_4:-5318892 | None:intergenic |
| ATGAGAGGGCTGAGTTGGAG+AGG | 0.593214 | 2_4:+5320927 | Msa0310490:CDS |
| GTTGAGGCAGTTGGAAGTGA+AGG | 0.595100 | 2_4:+5319204 | Msa0310490:five_prime_UTR |
| ACAAGCGAAGCCTGCAAACG+AGG | 0.601298 | 2_4:-5319489 | None:intergenic |
| GGAGAGAGAGATCAAGGAGA+GGG | 0.606521 | 2_4:+5319231 | Msa0310490:five_prime_UTR |
| TTGGAGGTTTGGCCAGTCAG+AGG | 0.607532 | 2_4:-5321038 | None:intergenic |
| GGTTTGGATGGTGAAGAAGA+TGG | 0.612162 | 2_4:+5319386 | Msa0310490:CDS |
| AGCATTGAGCATCAATGAGA+GGG | 0.612874 | 2_4:+5320913 | Msa0310490:CDS |
| CTGAGAAAGAGCACGTCCGA+TGG | 0.614254 | 2_4:-5319026 | None:intergenic |
| GAGGCAGTTGGAAGTGAAGG+TGG | 0.615671 | 2_4:+5319207 | Msa0310490:five_prime_UTR |
| TCCGGCGGAGAAATTGGCAG+CGG | 0.615724 | 2_4:+5319359 | Msa0310490:CDS |
| GTGAAGAAGATGGTGGAGTG+TGG | 0.615961 | 2_4:+5319396 | Msa0310490:CDS |
| ATGGCTGCCATTGTTGTGCA+GGG | 0.617221 | 2_4:+5320868 | Msa0310490:CDS |
| CAGCATTGAGCATCAATGAG+AGG | 0.617619 | 2_4:+5320912 | Msa0310490:CDS |
| AGTGAGGATGATGAAACGGA+GGG | 0.622730 | 2_4:-5318891 | None:intergenic |
| GCAGTTGGAAGTGAAGGTGG+CGG | 0.625405 | 2_4:+5319210 | Msa0310490:five_prime_UTR |
| ACACGAAACGACACTGCCAT+CGG | 0.626709 | 2_4:+5319010 | Msa0310490:five_prime_UTR |
| TTACTGGCCCTGCACAACAA+TGG | 0.626932 | 2_4:-5320875 | None:intergenic |
| TTTAAGTGGTGGTGTTCCGG+CGG | 0.628276 | 2_4:+5319344 | Msa0310490:CDS |
| CGGAGAGAGAGATCAAGGAG+AGG | 0.631132 | 2_4:+5319230 | Msa0310490:five_prime_UTR |
| ATGAGCAATGTGTAAAATGG+TGG | 0.634351 | 2_4:-5321015 | None:intergenic |
| TGAGAGGGCTGAGTTGGAGA+GGG | 0.635529 | 2_4:+5320928 | Msa0310490:CDS |
| TTGGATGGTGAAGAAGATGG+TGG | 0.645396 | 2_4:+5319389 | Msa0310490:CDS |
| TGTTGGAAAGCATTATAGAG+GGG | 0.646831 | 2_4:+5320951 | Msa0310490:CDS |
| TGGAGGAGAGTGGTATAGGA+TGG | 0.647947 | 2_4:+5319266 | Msa0310490:exon |
| ATCGACGATAATCACCTCGA+AGG | 0.649591 | 2_4:+5319124 | Msa0310490:five_prime_UTR |
| AGTTAAAGATGTTACAGACA+TGG | 0.655695 | 2_4:+5320849 | Msa0310490:CDS |
| AAAAGAAAATAACCAAAATG+GGG | 0.656227 | 2_4:+5318720 | Msa0310490:five_prime_UTR |
| TGAAGCTCTTCAGAGATGGG+CGG | 0.671325 | 2_4:+5319428 | Msa0310490:CDS |
| TGTGCAAAATGGATCGACAA+AGG | 0.696464 | 2_4:-5318642 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTAAATCATTTAAAA+TGG | + | chr2_4:5320153-5320172 | Msa0310490:intron | 10.0% |
| !! | ATATGAAGAATGAATATATA+TGG | - | chr2_4:5319529-5319548 | None:intergenic | 15.0% |
| !!! | TAATTTTACAATTTTGAACA+TGG | + | chr2_4:5319585-5319604 | Msa0310490:intron | 15.0% |
| !!! | TTTAAATCATTTAAAATGGT+TGG | + | chr2_4:5320157-5320176 | Msa0310490:intron | 15.0% |
| !! | GAAAAGAAAATAACCAAAAT+GGG | + | chr2_4:5318719-5318738 | Msa0310490:five_prime_UTR | 20.0% |
| !! | AAAAGAAAATAACCAAAATG+GGG | + | chr2_4:5318720-5318739 | Msa0310490:five_prime_UTR | 20.0% |
| !!! | TTTTCATTGAAGAAAAAAGA+AGG | - | chr2_4:5318944-5318963 | None:intergenic | 20.0% |
| !! | TCTTATTGTATGTATAACTT+TGG | - | chr2_4:5320111-5320130 | None:intergenic | 20.0% |
| !! | ATTTATGATCAAGAATCTAA+TGG | - | chr2_4:5320442-5320461 | None:intergenic | 20.0% |
| !! | TCAAAGCATAAACTAAAAAT+TGG | - | chr2_4:5320520-5320539 | None:intergenic | 20.0% |
| !!! | AAATGTATTTCTAGTTAAAG+TGG | + | chr2_4:5320539-5320558 | Msa0310490:intron | 20.0% |
| !!! | AATGTATTTCTAGTTAAAGT+GGG | + | chr2_4:5320540-5320559 | Msa0310490:intron | 20.0% |
| !! | TACAGAGTAGTTAAATTTAT+AGG | + | chr2_4:5320689-5320708 | Msa0310490:intron | 20.0% |
| !! | ACATTCAAGAAATATTTAAG+TGG | - | chr2_4:5321221-5321240 | None:intergenic | 20.0% |
| !! | TATGAATGGTATAAGTATAA+CGG | - | chr2_4:5321301-5321320 | None:intergenic | 20.0% |
| !! | ACTTATACCATTCATAAATT+TGG | + | chr2_4:5321305-5321324 | Msa0310490:three_prime_UTR | 20.0% |
| !! | TACATTTCCAAATTTATGAA+TGG | - | chr2_4:5321315-5321334 | None:intergenic | 20.0% |
| ! | CGAAAAGAAAATAACCAAAA+TGG | + | chr2_4:5318718-5318737 | Msa0310490:five_prime_UTR | 25.0% |
| ! | AGAAAAAAGAAGGAATGAAA+CGG | - | chr2_4:5318934-5318953 | None:intergenic | 25.0% |
| ! | TAACTTTGGATATAATTTCC+CGG | - | chr2_4:5320097-5320116 | None:intergenic | 25.0% |
| ! | TTTATTGGCCATTATAAACT+TGG | - | chr2_4:5320310-5320329 | None:intergenic | 25.0% |
| ! | AATGGCCAATAAACTTATTA+TGG | + | chr2_4:5320317-5320336 | Msa0310490:intron | 25.0% |
| ! | ATGGCCAATAAACTTATTAT+GGG | + | chr2_4:5320318-5320337 | Msa0310490:intron | 25.0% |
| ! | TTGATCATAAATAACTTCCA+AGG | + | chr2_4:5320450-5320469 | Msa0310490:intron | 25.0% |
| ! | TAAACTAAAAATTGGATGAG+AGG | - | chr2_4:5320512-5320531 | None:intergenic | 25.0% |
| !!! | GTTCAAATTTAGAAGTGTTT+AGG | + | chr2_4:5320593-5320612 | Msa0310490:intron | 25.0% |
| !!! | AAGTTCTAAGTTATATCAAC+AGG | + | chr2_4:5321195-5321214 | Msa0310490:three_prime_UTR | 25.0% |
| !!! | CTTGCTGTTTAAGTTTAATA+CGG | + | chr2_4:5321359-5321378 | Msa0310490:three_prime_UTR | 25.0% |
| !! | AGCTTTAAATGTGTGCAAAA+TGG | - | chr2_4:5318656-5318675 | None:intergenic | 30.0% |
| ! | CACACATTTAAAGCTAGAAA+AGG | + | chr2_4:5318661-5318680 | Msa0310490:five_prime_UTR | 30.0% |
| ! | TCGTATTTTCTTGAACTAAC+TGG | - | chr2_4:5319076-5319095 | None:intergenic | 30.0% |
| CCAAGTAACTTTGATAAAGA+TGG | - | chr2_4:5319672-5319691 | None:intergenic | 30.0% | |
| CCATCTTTATCAAAGTTACT+TGG | + | chr2_4:5319669-5319688 | Msa0310490:intron | 30.0% | |
| TTTCAAACCACCTATATTCT+CGG | - | chr2_4:5319695-5319714 | None:intergenic | 30.0% | |
| AAAATATTAGCTCGAGAATG+TGG | + | chr2_4:5319712-5319731 | Msa0310490:intron | 30.0% | |
| !! | TTGGAAAATTTCTAAGGCAA+AGG | + | chr2_4:5319746-5319765 | Msa0310490:intron | 30.0% |
| !! | TTTTGTCTTGTTGCATTACA+AGG | - | chr2_4:5319838-5319857 | None:intergenic | 30.0% |
| TTTAAGCCTTTGTACTCATT+AGG | + | chr2_4:5320050-5320069 | Msa0310490:intron | 30.0% | |
| AACTTTGGATATAATTTCCC+GGG | - | chr2_4:5320096-5320115 | None:intergenic | 30.0% | |
| TCTTGTCTCCAAGTTTATAA+TGG | + | chr2_4:5320299-5320318 | Msa0310490:intron | 30.0% | |
| TGGCCAATAAACTTATTATG+GGG | + | chr2_4:5320319-5320338 | Msa0310490:intron | 30.0% | |
| AAGCCCCATAATAAGTTTAT+TGG | - | chr2_4:5320325-5320344 | None:intergenic | 30.0% | |
| TAAATAACTTCCAAGGATTG+TGG | + | chr2_4:5320457-5320476 | Msa0310490:intron | 30.0% | |
| TTTGAACCACTATGAAGTAT+TGG | - | chr2_4:5320580-5320599 | None:intergenic | 30.0% | |
| GCGAACATTAAAGATATCAT+AGG | - | chr2_4:5320723-5320742 | None:intergenic | 30.0% | |
| ! | TTCAAAGAAGCCAAAGATTT+TGG | + | chr2_4:5320779-5320798 | Msa0310490:CDS | 30.0% |
| AGTTAAAGATGTTACAGACA+TGG | + | chr2_4:5320849-5320868 | Msa0310490:CDS | 30.0% | |
| GAATGTCAAAGAACTATCAT+AGG | + | chr2_4:5321235-5321254 | Msa0310490:three_prime_UTR | 30.0% | |
| !! | GGTTATTTTCTTTTCGTACG+CGG | - | chr2_4:5318714-5318733 | None:intergenic | 35.0% |
| AGAAAGTGAGGATGATGAAA+CGG | - | chr2_4:5318898-5318917 | None:intergenic | 35.0% | |
| AAAAAGAAGGAATGAAACGG+AGG | - | chr2_4:5318931-5318950 | None:intergenic | 35.0% | |
| ! | GAACTTATTCTGCGTTTTGA+TGG | - | chr2_4:5318981-5319000 | None:intergenic | 35.0% |
| ! | GGTAGGTTGGAAAATTTCTA+AGG | + | chr2_4:5319740-5319759 | Msa0310490:intron | 35.0% |
| !! | GAAAATTTCTAAGGCAAAGG+AGG | + | chr2_4:5319749-5319768 | Msa0310490:intron | 35.0% |
| TCCAACTTGTAATTCTAGCA+AGG | + | chr2_4:5319867-5319886 | Msa0310490:intron | 35.0% | |
| CCAACTTGTAATTCTAGCAA+GGG | + | chr2_4:5319868-5319887 | Msa0310490:intron | 35.0% | |
| ! | ATAGTAGCTTTTGACACCAA+AGG | + | chr2_4:5319998-5320017 | Msa0310490:intron | 35.0% |
| TTAAGACAAATCGTTGCCTT+TGG | - | chr2_4:5320017-5320036 | None:intergenic | 35.0% | |
| CTAATGCCTAATGAGTACAA+AGG | - | chr2_4:5320059-5320078 | None:intergenic | 35.0% | |
| ! | TTAGATTAGACTAGTTGTCC+CGG | + | chr2_4:5320075-5320094 | Msa0310490:intron | 35.0% |
| AATGGTTGGCAGAAAGTTTA+TGG | + | chr2_4:5320171-5320190 | Msa0310490:intron | 35.0% | |
| ATGACTCCAATACTTCATAG+TGG | + | chr2_4:5320571-5320590 | Msa0310490:intron | 35.0% | |
| !! | GTGTTGGAAAGCATTATAGA+GGG | + | chr2_4:5320950-5320969 | Msa0310490:CDS | 35.0% |
| !! | TGTTGGAAAGCATTATAGAG+GGG | + | chr2_4:5320951-5320970 | Msa0310490:CDS | 35.0% |
| AAGAACAGGTTCTTTCTCTT+TGG | + | chr2_4:5320990-5321009 | Msa0310490:CDS | 35.0% | |
| ATGAGCAATGTGTAAAATGG+TGG | - | chr2_4:5321018-5321037 | None:intergenic | 35.0% | |
| AGGATGAGCAATGTGTAAAA+TGG | - | chr2_4:5321021-5321040 | None:intergenic | 35.0% | |
| TGTGCAAAATGGATCGACAA+AGG | - | chr2_4:5318645-5318664 | None:intergenic | 40.0% | |
| AAAGGGAAGAGATTAGGGTT+CGG | - | chr2_4:5318802-5318821 | None:intergenic | 40.0% | |
| GGTGAAAAGGGAAGAGATTA+GGG | - | chr2_4:5318807-5318826 | None:intergenic | 40.0% | |
| TGGTGAAAAGGGAAGAGATT+AGG | - | chr2_4:5318808-5318827 | None:intergenic | 40.0% | |
| GAGTTTGTAGTTGACAGAGA+AGG | - | chr2_4:5318864-5318883 | None:intergenic | 40.0% | |
| !! | CTTATTCTGCGTTTTGATGG+TGG | - | chr2_4:5318978-5318997 | None:intergenic | 40.0% |
| TTGCTTTGTCTTCAGCGTTT+GGG | + | chr2_4:5319176-5319195 | Msa0310490:five_prime_UTR | 40.0% | |
| TGATGAAGCTCTTCAGAGAT+GGG | + | chr2_4:5319425-5319444 | Msa0310490:CDS | 40.0% | |
| AGTTACTTGGCCGAGAATAT+AGG | + | chr2_4:5319682-5319701 | Msa0310490:intron | 40.0% | |
| GCAAAGGAGGAAAGATGATA+AGG | + | chr2_4:5319762-5319781 | Msa0310490:intron | 40.0% | |
| CACTTTGTCAAAGCTGTTTG+TGG | + | chr2_4:5319801-5319820 | Msa0310490:intron | 40.0% | |
| CCCTTGCTAGAATTACAAGT+TGG | - | chr2_4:5319871-5319890 | None:intergenic | 40.0% | |
| ! | TAGATTAGACTAGTTGTCCC+GGG | + | chr2_4:5320076-5320095 | Msa0310490:intron | 40.0% |
| TTTCAGTCACAGCAACATTC+TGG | + | chr2_4:5320271-5320290 | Msa0310490:intron | 40.0% | |
| GAGAGGTAACTCTTCATTCT+AGG | - | chr2_4:5320495-5320514 | None:intergenic | 40.0% | |
| CTTTGAACAGAAATGCTGCT+TGG | - | chr2_4:5320766-5320785 | None:intergenic | 40.0% | |
| TCTCATTGATGCTCAATGCT+GGG | - | chr2_4:5320913-5320932 | None:intergenic | 40.0% | |
| ! | AGCATTGAGCATCAATGAGA+GGG | + | chr2_4:5320913-5320932 | Msa0310490:CDS | 40.0% |
| !! | GGTGTTGGAAAGCATTATAG+AGG | + | chr2_4:5320949-5320968 | Msa0310490:CDS | 40.0% |
| GCATAACATGATTGGAGGTT+TGG | - | chr2_4:5321052-5321071 | None:intergenic | 40.0% | |
| ACAACTACTAGAGCTGAAGT+TGG | - | chr2_4:5321172-5321191 | None:intergenic | 40.0% | |
| AGCATATCAAGCCACTATGT+TGG | + | chr2_4:5321334-5321353 | Msa0310490:three_prime_UTR | 40.0% | |
| AACAGCAAGAACCAACATAG+TGG | - | chr2_4:5321348-5321367 | None:intergenic | 40.0% | |
| TGGATCGACAAAGGTTGACT+TGG | - | chr2_4:5318636-5318655 | None:intergenic | 45.0% | |
| ! | TTTCGCGTTCTTCCCCATTT+TGG | - | chr2_4:5318735-5318754 | None:intergenic | 45.0% |
| AAGAACGCGAAAAACACGGA+CGG | + | chr2_4:5318743-5318762 | Msa0310490:five_prime_UTR | 45.0% | |
| !!! | GAAGGTGGTGGTTTTGTCAA+CGG | - | chr2_4:5318837-5318856 | None:intergenic | 45.0% |
| TGTAGTTGACAGAGAAGGAG+AGG | - | chr2_4:5318859-5318878 | None:intergenic | 45.0% | |
| AGTGAGGATGATGAAACGGA+GGG | - | chr2_4:5318894-5318913 | None:intergenic | 45.0% | |
| AAGTGAGGATGATGAAACGG+AGG | - | chr2_4:5318895-5318914 | None:intergenic | 45.0% | |
| AAGAAGGAATGAAACGGAGG+AGG | - | chr2_4:5318928-5318947 | None:intergenic | 45.0% | |
| CGAAGCAGTTCGATCGTTAA+CGG | + | chr2_4:5319093-5319112 | Msa0310490:five_prime_UTR | 45.0% | |
| ATCGACGATAATCACCTCGA+AGG | + | chr2_4:5319124-5319143 | Msa0310490:five_prime_UTR | 45.0% | |
| GTAACGAATGAACACCTTCG+AGG | - | chr2_4:5319141-5319160 | None:intergenic | 45.0% | |
| ! | GTTGCTTTGTCTTCAGCGTT+TGG | + | chr2_4:5319175-5319194 | Msa0310490:five_prime_UTR | 45.0% |
| TTTGTCTTCAGCGTTTGGGA+GGG | + | chr2_4:5319180-5319199 | Msa0310490:five_prime_UTR | 45.0% | |
| ! | TGGTTTAAGTGGTGGTGTTC+CGG | + | chr2_4:5319341-5319360 | Msa0310490:CDS | 45.0% |
| GGTTTGGATGGTGAAGAAGA+TGG | + | chr2_4:5319386-5319405 | Msa0310490:CDS | 45.0% | |
| TTGGATGGTGAAGAAGATGG+TGG | + | chr2_4:5319389-5319408 | Msa0310490:CDS | 45.0% | |
| CTGATGAAGCTCTTCAGAGA+TGG | + | chr2_4:5319424-5319443 | Msa0310490:CDS | 45.0% | |
| ! | GCTTCGCTTGTTAAACTTGC+AGG | + | chr2_4:5319501-5319520 | Msa0310490:CDS | 45.0% |
| TACTTGGCCGAGAATATAGG+TGG | + | chr2_4:5319685-5319704 | Msa0310490:intron | 45.0% | |
| ATCGTCTGCGCCAAAATCTT+TGG | - | chr2_4:5320792-5320811 | None:intergenic | 45.0% | |
| ! | TTTTGGCGCAGACGATATTG+AGG | + | chr2_4:5320796-5320815 | Msa0310490:CDS | 45.0% |
| CAAGATGAAGCAATGCATGC+AGG | + | chr2_4:5320823-5320842 | Msa0310490:CDS | 45.0% | |
| CTCATTGATGCTCAATGCTG+GGG | - | chr2_4:5320912-5320931 | None:intergenic | 45.0% | |
| CTCTCATTGATGCTCAATGC+TGG | - | chr2_4:5320914-5320933 | None:intergenic | 45.0% | |
| ! | CAGCATTGAGCATCAATGAG+AGG | + | chr2_4:5320912-5320931 | Msa0310490:CDS | 45.0% |
| !! | GGAAAGCATTATAGAGGGGT+TGG | + | chr2_4:5320955-5320974 | Msa0310490:CDS | 45.0% |
| AGCGAGCATAACATGATTGG+AGG | - | chr2_4:5321057-5321076 | None:intergenic | 45.0% | |
| TCCAATCATGTTATGCTCGC+TGG | + | chr2_4:5321056-5321075 | Msa0310490:CDS | 45.0% | |
| ACCAGCGAGCATAACATGAT+TGG | - | chr2_4:5321060-5321079 | None:intergenic | 45.0% | |
| GGGGAAGAACGCGAAAAACA+CGG | + | chr2_4:5318739-5318758 | Msa0310490:five_prime_UTR | 50.0% | |
| GTTGACAGAGAAGGAGAGGA+AGG | - | chr2_4:5318855-5318874 | None:intergenic | 50.0% | |
| GGATGATGAAACGGAGGGTT+TGG | - | chr2_4:5318889-5318908 | None:intergenic | 50.0% | |
| GGAGGAAGAGGTAGAAAGTG+AGG | - | chr2_4:5318910-5318929 | None:intergenic | 50.0% | |
| GAATGAAACGGAGGAGGAAG+AGG | - | chr2_4:5318922-5318941 | None:intergenic | 50.0% | |
| ACACGAAACGACACTGCCAT+CGG | + | chr2_4:5319010-5319029 | Msa0310490:five_prime_UTR | 50.0% | |
| CTTTGTCTTCAGCGTTTGGG+AGG | + | chr2_4:5319179-5319198 | Msa0310490:five_prime_UTR | 50.0% | |
| GTTGAGGCAGTTGGAAGTGA+AGG | + | chr2_4:5319204-5319223 | Msa0310490:five_prime_UTR | 50.0% | |
| GGAGAGAGAGATCAAGGAGA+GGG | + | chr2_4:5319231-5319250 | Msa0310490:five_prime_UTR | 50.0% | |
| GATCAAGGAGAGGGTGAACA+AGG | + | chr2_4:5319240-5319259 | Msa0310490:five_prime_UTR | 50.0% | |
| !! | AACAAGGTGATGGAGGAGAG+TGG | + | chr2_4:5319256-5319275 | Msa0310490:five_prime_UTR | 50.0% |
| ! | GTGATGGAGGAGAGTGGTAT+AGG | + | chr2_4:5319262-5319281 | Msa0310490:five_prime_UTR | 50.0% |
| TGGAGGAGAGTGGTATAGGA+TGG | + | chr2_4:5319266-5319285 | Msa0310490:exon | 50.0% | |
| GAGAGTGGTATAGGATGGTG+AGG | + | chr2_4:5319271-5319290 | Msa0310490:exon | 50.0% | |
| AGTGGTATAGGATGGTGAGG+AGG | + | chr2_4:5319274-5319293 | Msa0310490:exon | 50.0% | |
| GTATAGGATGGTGAGGAGGA+GGG | + | chr2_4:5319278-5319297 | Msa0310490:exon | 50.0% | |
| ! | TTTAAGTGGTGGTGTTCCGG+CGG | + | chr2_4:5319344-5319363 | Msa0310490:CDS | 50.0% |
| ! | AATTGGCAGCGGAGTTGGTT+TGG | + | chr2_4:5319370-5319389 | Msa0310490:CDS | 50.0% |
| !! | GTGAAGAAGATGGTGGAGTG+TGG | + | chr2_4:5319396-5319415 | Msa0310490:CDS | 50.0% |
| TGAAGCTCTTCAGAGATGGG+CGG | + | chr2_4:5319428-5319447 | Msa0310490:CDS | 50.0% | |
| TACTGCTGATCCTCGTTTGC+AGG | + | chr2_4:5319479-5319498 | Msa0310490:CDS | 50.0% | |
| TAGCTCGAGAATGTGGACGT+AGG | + | chr2_4:5319719-5319738 | Msa0310490:intron | 50.0% | |
| TCGAGAATGTGGACGTAGGT+AGG | + | chr2_4:5319723-5319742 | Msa0310490:intron | 50.0% | |
| GAATGTGGACGTAGGTAGGT+TGG | + | chr2_4:5319727-5319746 | Msa0310490:intron | 50.0% | |
| TGCAGAGAGACCACAATCCT+TGG | - | chr2_4:5320470-5320489 | None:intergenic | 50.0% | |
| ATGGCTGCCATTGTTGTGCA+GGG | + | chr2_4:5320868-5320887 | Msa0310490:CDS | 50.0% | |
| TTACTGGCCCTGCACAACAA+TGG | - | chr2_4:5320878-5320897 | None:intergenic | 50.0% | |
| TTGTTGTGCAGGGCCAGTAA+TGG | + | chr2_4:5320878-5320897 | Msa0310490:CDS | 50.0% | |
| CATCAATGAGAGGGCTGAGT+TGG | + | chr2_4:5320922-5320941 | Msa0310490:CDS | 50.0% | |
| GGAACAAGCGAAGCAAGAAC+AGG | + | chr2_4:5320976-5320995 | Msa0310490:CDS | 50.0% | |
| CACATTGCTCATCCTCTGAC+TGG | + | chr2_4:5321026-5321045 | Msa0310490:CDS | 50.0% | |
| AACGCGAAAAACACGGACGG+CGG | + | chr2_4:5318746-5318765 | Msa0310490:five_prime_UTR | 55.0% | |
| GAGATTAGGGTTCGGAGGAG+CGG | - | chr2_4:5318794-5318813 | None:intergenic | 55.0% | |
| GGGAAGAGATTAGGGTTCGG+AGG | - | chr2_4:5318799-5318818 | None:intergenic | 55.0% | |
| ! | AACGGCGGTGGTGGTGAAAA+GGG | - | chr2_4:5318819-5318838 | None:intergenic | 55.0% |
| !!! | GGTGGTGGTTTTGTCAACGG+CGG | - | chr2_4:5318834-5318853 | None:intergenic | 55.0% |
| AGAGAAGGAGAGGAAGGTGG+TGG | - | chr2_4:5318849-5318868 | None:intergenic | 55.0% | |
| GACAGAGAAGGAGAGGAAGG+TGG | - | chr2_4:5318852-5318871 | None:intergenic | 55.0% | |
| ! | CTGAGAAAGAGCACGTCCGA+TGG | - | chr2_4:5319029-5319048 | None:intergenic | 55.0% |
| GAGGCAGTTGGAAGTGAAGG+TGG | + | chr2_4:5319207-5319226 | Msa0310490:five_prime_UTR | 55.0% | |
| GCAGTTGGAAGTGAAGGTGG+CGG | + | chr2_4:5319210-5319229 | Msa0310490:five_prime_UTR | 55.0% | |
| CGGAGAGAGAGATCAAGGAG+AGG | + | chr2_4:5319230-5319249 | Msa0310490:five_prime_UTR | 55.0% | |
| GGAGAGGGTGAACAAGGTGA+TGG | + | chr2_4:5319246-5319265 | Msa0310490:five_prime_UTR | 55.0% | |
| ! | GAGGGTGAACAAGGTGATGG+AGG | + | chr2_4:5319249-5319268 | Msa0310490:five_prime_UTR | 55.0% |
| GGTATAGGATGGTGAGGAGG+AGG | + | chr2_4:5319277-5319296 | Msa0310490:exon | 55.0% | |
| TGGAAGGTGAAGGGAGGTGA+GGG | + | chr2_4:5319318-5319337 | Msa0310490:CDS | 55.0% | |
| GGAGGTGAGGGTGGTTTAAG+TGG | + | chr2_4:5319330-5319349 | Msa0310490:CDS | 55.0% | |
| GGTGAGGGTGGTTTAAGTGG+TGG | + | chr2_4:5319333-5319352 | Msa0310490:CDS | 55.0% | |
| TGGTGTTCCGGCGGAGAAAT+TGG | + | chr2_4:5319353-5319372 | Msa0310490:CDS | 55.0% | |
| GGAGAAATTGGCAGCGGAGT+TGG | + | chr2_4:5319365-5319384 | Msa0310490:CDS | 55.0% | |
| !! | TGGGCGGTGGCGGATAATTT+AGG | + | chr2_4:5319444-5319463 | Msa0310490:CDS | 55.0% |
| !! | GGGCGGTGGCGGATAATTTA+GGG | + | chr2_4:5319445-5319464 | Msa0310490:CDS | 55.0% |
| ACAAGCGAAGCCTGCAAACG+AGG | - | chr2_4:5319492-5319511 | None:intergenic | 55.0% | |
| CATGGCTGCCATTGTTGTGC+AGG | + | chr2_4:5320867-5320886 | Msa0310490:CDS | 55.0% | |
| !! | TGGGGCATCGATGCCATTAC+TGG | - | chr2_4:5320894-5320913 | None:intergenic | 55.0% |
| ! | ATGAGAGGGCTGAGTTGGAG+AGG | + | chr2_4:5320927-5320946 | Msa0310490:CDS | 55.0% |
| ! | TGAGAGGGCTGAGTTGGAGA+GGG | + | chr2_4:5320928-5320947 | Msa0310490:CDS | 55.0% |
| TTGGAGGTTTGGCCAGTCAG+AGG | - | chr2_4:5321041-5321060 | None:intergenic | 55.0% | |
| ATTAGGGTTCGGAGGAGCGG+CGG | - | chr2_4:5318791-5318810 | None:intergenic | 60.0% | |
| ! | CAACGGCGGTGGTGGTGAAA+AGG | - | chr2_4:5318820-5318839 | None:intergenic | 60.0% |
| !! | GGTTTTGTCAACGGCGGTGG+TGG | - | chr2_4:5318828-5318847 | None:intergenic | 60.0% |
| !!! | GGTGGTTTTGTCAACGGCGG+TGG | - | chr2_4:5318831-5318850 | None:intergenic | 60.0% |
| !! | GGTGGCGGAGAGAGAGATCA+AGG | + | chr2_4:5319225-5319244 | Msa0310490:five_prime_UTR | 60.0% |
| ! | GTGGTGGGGTGGAAGGTGAA+GGG | + | chr2_4:5319309-5319328 | Msa0310490:CDS | 60.0% |
| GTGGAAGGTGAAGGGAGGTG+AGG | + | chr2_4:5319317-5319336 | Msa0310490:CDS | 60.0% | |
| AAGGTGAAGGGAGGTGAGGG+TGG | + | chr2_4:5319321-5319340 | Msa0310490:CDS | 60.0% | |
| TCCGGCGGAGAAATTGGCAG+CGG | + | chr2_4:5319359-5319378 | Msa0310490:CDS | 60.0% | |
| TCCGCTGCCAATTTCTCCGC+CGG | - | chr2_4:5319363-5319382 | None:intergenic | 60.0% | |
| !! | GGCAGCGGAGTTGGTTTGGA+TGG | + | chr2_4:5319374-5319393 | Msa0310490:CDS | 60.0% |
| AGCTCTTCAGAGATGGGCGG+TGG | + | chr2_4:5319431-5319450 | Msa0310490:CDS | 60.0% | |
| TCTTCAGAGATGGGCGGTGG+CGG | + | chr2_4:5319434-5319453 | Msa0310490:CDS | 60.0% | |
| ! | GGCTGAGTTGGAGAGGGTGT+TGG | + | chr2_4:5320934-5320953 | Msa0310490:CDS | 60.0% |
| !! | CGGCGGAAGTGGTAGTGGCA+TGG | - | chr2_4:5318774-5318793 | None:intergenic | 65.0% |
| AGGAGCGGCGGAAGTGGTAG+TGG | - | chr2_4:5318779-5318798 | None:intergenic | 65.0% | |
| !! | CAGCGTTTGGGAGGGCGTTG+AGG | + | chr2_4:5319188-5319207 | Msa0310490:five_prime_UTR | 65.0% |
| !! | TGGGAGGGCGTTGAGGCAGT+TGG | + | chr2_4:5319195-5319214 | Msa0310490:five_prime_UTR | 65.0% |
| GGATGGTGAGGAGGAGGGTG+TGG | + | chr2_4:5319283-5319302 | Msa0310490:exon | 65.0% | |
| ! | TGGTGAGGAGGAGGGTGTGG+AGG | + | chr2_4:5319286-5319305 | Msa0310490:CDS | 65.0% |
| ! | GGTGAGGAGGAGGGTGTGGA+GGG | + | chr2_4:5319287-5319306 | Msa0310490:CDS | 65.0% |
| ! | AGGAGGGTGTGGAGGGTGGT+GGG | + | chr2_4:5319294-5319313 | Msa0310490:CDS | 65.0% |
| !! | GGTGGTGGGGTGGAAGGTGA+AGG | + | chr2_4:5319308-5319327 | Msa0310490:CDS | 65.0% |
| GTGGGGTGGAAGGTGAAGGG+AGG | + | chr2_4:5319312-5319331 | Msa0310490:CDS | 65.0% | |
| GTTCGGAGGAGCGGCGGAAG+TGG | - | chr2_4:5318785-5318804 | None:intergenic | 70.0% | |
| ! | GAGGAGGAGGGTGTGGAGGG+TGG | + | chr2_4:5319290-5319309 | Msa0310490:CDS | 70.0% |
| ! | GAGGAGGGTGTGGAGGGTGG+TGG | + | chr2_4:5319293-5319312 | Msa0310490:CDS | 70.0% |
| ! | GGAGGGTGTGGAGGGTGGTG+GGG | + | chr2_4:5319295-5319314 | Msa0310490:CDS | 70.0% |
| !! | GTGGAGGGTGGTGGGGTGGA+AGG | + | chr2_4:5319302-5319321 | Msa0310490:CDS | 70.0% |
| !! | GGGTGTGGAGGGTGGTGGGG+TGG | + | chr2_4:5319298-5319317 | Msa0310490:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 5318632 | 5321387 | 5318632 | ID=Msa0310490;Name=Msa0310490 |
| chr2_4 | mRNA | 5318632 | 5321387 | 5318632 | ID=Msa0310490-mRNA-1;Parent=Msa0310490;Name=Msa0310490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=653|1|1|1|1|1|2|264|196 |
| chr2_4 | exon | 5318632 | 5319522 | 5318632 | ID=Msa0310490-mRNA-1:exon:1875;Parent=Msa0310490-mRNA-1 |
| chr2_4 | exon | 5320771 | 5321387 | 5320771 | ID=Msa0310490-mRNA-1:exon:1876;Parent=Msa0310490-mRNA-1 |
| chr2_4 | five_prime_UTR | 5318632 | 5319284 | 5318632 | ID=Msa0310490-mRNA-1:five_prime_utr;Parent=Msa0310490-mRNA-1 |
| chr2_4 | CDS | 5319285 | 5319522 | 5319285 | ID=Msa0310490-mRNA-1:cds;Parent=Msa0310490-mRNA-1 |
| chr2_4 | CDS | 5320771 | 5321123 | 5320771 | ID=Msa0310490-mRNA-1:cds;Parent=Msa0310490-mRNA-1 |
| chr2_4 | three_prime_UTR | 5321124 | 5321387 | 5321124 | ID=Msa0310490-mRNA-1:three_prime_utr;Parent=Msa0310490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
