Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013410 | sp|Q41140|PFPA_RICCO | 85.413 | 617 | 83 | 2 | 1 | 617 | 1 | 610 | 0.0 | 1102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013410 | A0A396JLW5 | 95.860 | 628 | 9 | 2 | 1 | 623 | 1 | 616 | 0.0 | 1233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0013410 | 0.816244 | 6.110929e-52 | -8.615850e-47 |
| Msa0013410 | Msa0045620 | 0.812492 | 4.126787e-51 | -8.615850e-47 |
| Msa0013410 | Msa0080440 | 0.815992 | 6.956714e-52 | -8.615850e-47 |
| Msa0013410 | Msa0288400 | 0.805353 | 1.390561e-49 | -8.615850e-47 |
| Msa0013410 | Msa0342220 | 0.810511 | 1.111787e-50 | -8.615850e-47 |
| Msa0013410 | Msa0521530 | 0.805567 | 1.254260e-49 | -8.615850e-47 |
| Msa0013410 | Msa0536410 | 0.804287 | 2.322801e-49 | -8.615850e-47 |
| Msa0013410 | Msa0618840 | 0.801816 | 7.533234e-49 | -8.615850e-47 |
| Msa0013410 | Msa0618990 | 0.809367 | 1.959395e-50 | -8.615850e-47 |
| Msa0013410 | Msa0623310 | 0.814102 | 1.827616e-51 | -8.615850e-47 |
| Msa0013410 | Msa0672420 | 0.803997 | 2.668631e-49 | -8.615850e-47 |
| Msa0013410 | Msa0687370 | 0.817656 | 2.945140e-52 | -8.615850e-47 |
| Msa0013410 | Msa0708980 | 0.814595 | 1.421949e-51 | -8.615850e-47 |
| Msa0013410 | Msa0945900 | 0.800191 | 1.617953e-48 | -8.615850e-47 |
| Msa0013410 | Msa0982960 | 0.811600 | 6.454704e-51 | -8.615850e-47 |
| Msa0013410 | Msa1008850 | 0.800416 | 1.455895e-48 | -8.615850e-47 |
| Msa0013410 | Msa1050260 | 0.804920 | 1.713272e-49 | -8.615850e-47 |
| Msa0013410 | Msa1105540 | 0.800518 | 1.388412e-48 | -8.615850e-47 |
| Msa0013410 | Msa1231490 | 0.801053 | 1.079414e-48 | -8.615850e-47 |
| Msa0013410 | Msa1278030 | 0.804565 | 2.031995e-49 | -8.615850e-47 |
| Msa0013410 | Msa1312240 | 0.807544 | 4.799988e-50 | -8.615850e-47 |
| Msa0013410 | Msa1371800 | 0.806894 | 6.589067e-50 | -8.615850e-47 |
| Msa0013410 | Msa1376310 | 0.806098 | 9.700690e-50 | -8.615850e-47 |
| Msa0013410 | Msa1385570 | 0.822851 | 1.898621e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013410 | MtrunA17_Chr1g0162751 | 95.860 | 628 | 9 | 2 | 1 | 623 | 1 | 616 | 0.0 | 1233 |
| Msa0013410 | MtrunA17_Chr2g0289271 | 40.357 | 560 | 302 | 9 | 12 | 565 | 27 | 560 | 9.36e-132 | 398 |
| Msa0013410 | MtrunA17_Chr4g0075371 | 39.356 | 559 | 309 | 8 | 12 | 565 | 31 | 564 | 5.44e-129 | 391 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013410 | AT1G20950.1 | 80.676 | 621 | 111 | 3 | 1 | 619 | 1 | 614 | 0.0 | 1038 |
| Msa0013410 | AT1G76550.1 | 80.328 | 610 | 113 | 2 | 1 | 610 | 1 | 603 | 0.0 | 1032 |
| Msa0013410 | AT4G04040.1 | 40.414 | 532 | 288 | 8 | 40 | 565 | 56 | 564 | 6.46e-130 | 394 |
| Msa0013410 | AT1G12000.1 | 40.072 | 559 | 304 | 8 | 12 | 565 | 30 | 562 | 1.47e-128 | 390 |
| Msa0013410 | AT5G56630.1 | 25.418 | 299 | 189 | 9 | 67 | 350 | 75 | 354 | 2.23e-14 | 76.6 |
Find 159 sgRNAs with CRISPR-Local
Find 390 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTATGTGCCTTCTTTC+TGG | 0.073326 | 1_1:+20729484 | None:intergenic |
| TTATTATTTCATTCGTCTTA+TGG | 0.195416 | 1_1:-20730903 | Msa0013410:CDS |
| TCACTCTGAATGTGACATTT+TGG | 0.207029 | 1_1:-20727744 | Msa0013410:exon |
| AATCCAAGCAAAACATTCTT+AGG | 0.212478 | 1_1:+20732362 | None:intergenic |
| CTGGTGGACACAATGTTATT+TGG | 0.218175 | 1_1:-20732415 | Msa0013410:CDS |
| AAAGGTTGTCCATAGGTATT+AGG | 0.237212 | 1_1:+20732648 | None:intergenic |
| TTTGCAATTTCAGTACATTT+AGG | 0.248059 | 1_1:+20727100 | None:intergenic |
| TGGTGGACACAATGTTATTT+GGG | 0.250228 | 1_1:-20732414 | Msa0013410:CDS |
| CGGCTTTGATACAATTTCTA+AGG | 0.252852 | 1_1:-20731225 | Msa0013410:intron |
| ACAACTGTTAGGGTTGAATT+TGG | 0.255337 | 1_1:-20732726 | Msa0013410:CDS |
| CCACATTTCCACTTGTTTAC+AGG | 0.258480 | 1_1:+20729208 | None:intergenic |
| AATTTCTACCACCATTTATC+AGG | 0.275144 | 1_1:-20729810 | Msa0013410:CDS |
| TTGATATTATTGCAGGTTCT+TGG | 0.276954 | 1_1:-20729301 | Msa0013410:intron |
| TCTTTCGTGAAATTTCAAAA+AGG | 0.283449 | 1_1:+20730697 | None:intergenic |
| ACCACCATGGATTCTGATTA+TGG | 0.286383 | 1_1:-20733195 | Msa0013410:exon |
| TATTATTTCATTCGTCTTAT+GGG | 0.287177 | 1_1:-20730902 | Msa0013410:CDS |
| TGCAACAATTTGAAACTTGA+TGG | 0.294729 | 1_1:-20731646 | Msa0013410:CDS |
| ACATTAATTCTTACCATGTT+TGG | 0.296855 | 1_1:+20730833 | None:intergenic |
| TAGCCTTGGGAAGTAGTTAT+TGG | 0.303535 | 1_1:-20727660 | Msa0013410:three_prime_UTR |
| AAATGCGACAAGCTTTCTTT+TGG | 0.307996 | 1_1:-20728467 | Msa0013410:CDS |
| TGCTCTGTTCAGGTAATTCT+TGG | 0.312281 | 1_1:-20730747 | Msa0013410:intron |
| CAATCAGACCCTCTGGAATA+AGG | 0.318332 | 1_1:+20730515 | None:intergenic |
| TTTACCTGTCTCCTGATAAA+TGG | 0.326354 | 1_1:+20729799 | None:intergenic |
| AATAGATAAACTAACCTAAT+AGG | 0.330539 | 1_1:+20732564 | None:intergenic |
| CGACATTTGTTTCCACAAAC+TGG | 0.339185 | 1_1:+20731246 | None:intergenic |
| TGATGTATGTTGTTGATTGC+AGG | 0.342500 | 1_1:-20728501 | Msa0013410:CDS |
| CCAGGCCCGCTTCAGTTTGA+TGG | 0.342585 | 1_1:-20728427 | Msa0013410:CDS |
| GTCATATTGCTTGGTAGTTA+AGG | 0.346515 | 1_1:-20728527 | Msa0013410:CDS |
| ATTGATGTGGCTCCAGGATT+AGG | 0.347191 | 1_1:+20729001 | None:intergenic |
| TAACTGAGCACCCTCCTATT+AGG | 0.347814 | 1_1:-20732578 | Msa0013410:intron |
| ATGTGCAGGGAACAACTGTT+AGG | 0.350716 | 1_1:-20732737 | Msa0013410:intron |
| CTTGATGGCCTTGTCATCAT+TGG | 0.353269 | 1_1:-20731631 | Msa0013410:CDS |
| TTGAAGATCTGAGAGTTCTC+TGG | 0.355423 | 1_1:+20733167 | None:intergenic |
| TGAAGGCAAGGAGGGAGTTC+AGG | 0.357395 | 1_1:+20733123 | None:intergenic |
| TCAAACCAGCAGCTAGTATA+TGG | 0.361979 | 1_1:+20729266 | None:intergenic |
| TGTGCTGAGTCATCTGATTC+AGG | 0.364211 | 1_1:+20729665 | None:intergenic |
| TCTTCAACATTAAGAGTGAT+AGG | 0.374271 | 1_1:+20728385 | None:intergenic |
| TATGCAGGTGGTTGGTGTTC+CGG | 0.377155 | 1_1:-20731294 | Msa0013410:intron |
| GCCAATTGACAATTTGTGTT+TGG | 0.385396 | 1_1:-20727518 | Msa0013410:three_prime_UTR |
| CCGCTTCAGTTTGATGGTCC+TGG | 0.386204 | 1_1:-20728421 | Msa0013410:CDS |
| GGCGGACGAAAGATCAAATT+AGG | 0.387319 | 1_1:-20731702 | Msa0013410:CDS |
| ACCGCCATGTCATCTTCTTC+CGG | 0.391094 | 1_1:-20727777 | Msa0013410:CDS |
| CCATCAAACTGAAGCGGGCC+TGG | 0.394290 | 1_1:+20728427 | None:intergenic |
| AAAGATTGCTGATGCAGTTC+AGG | 0.395394 | 1_1:-20730679 | Msa0013410:CDS |
| TTCAAAAGTGCATACACTTC+AGG | 0.401104 | 1_1:+20730484 | None:intergenic |
| TCAGAGTGATGAAGTGTTGC+CGG | 0.403240 | 1_1:+20727758 | None:intergenic |
| TTTCCGATTGATGTGGCTCC+AGG | 0.406513 | 1_1:+20728995 | None:intergenic |
| ATACTAGCTGCTGGTTTGAA+TGG | 0.408369 | 1_1:-20729262 | Msa0013410:CDS |
| GACCGATTATATACCTTTGT+AGG | 0.414337 | 1_1:+20731462 | None:intergenic |
| TCCAAACACAAATTGTCAAT+TGG | 0.414828 | 1_1:+20727517 | None:intergenic |
| GACGATATTTATAGAAATCC+AGG | 0.425078 | 1_1:-20728445 | Msa0013410:CDS |
| CTTTCTTCAGGTGGGTCAGA+AGG | 0.428161 | 1_1:-20731906 | Msa0013410:intron |
| TAGGTGGTTATGATTTGCTT+GGG | 0.438309 | 1_1:-20731723 | Msa0013410:CDS |
| GGTGTTCCGGTGACTTTGAA+TGG | 0.439764 | 1_1:-20731281 | Msa0013410:CDS |
| AGAGATACTATGTTCTACTA+TGG | 0.443302 | 1_1:+20733226 | None:intergenic |
| GGGAAAGATCTACTTATAGT+AGG | 0.451476 | 1_1:+20732669 | None:intergenic |
| TAATTCTTACCATGTTTGGA+TGG | 0.452936 | 1_1:+20730837 | None:intergenic |
| TTAGGTGGTTATGATTTGCT+TGG | 0.454502 | 1_1:-20731724 | Msa0013410:intron |
| CCTCTCAAATCCACAGTAGC+TGG | 0.454837 | 1_1:+20728959 | None:intergenic |
| TAATACCTATGGACAACCTT+TGG | 0.461790 | 1_1:-20732646 | Msa0013410:CDS |
| TCAAGTTAGTTACAGTTGCC+AGG | 0.469100 | 1_1:+20729236 | None:intergenic |
| GGGTCGCATCAAGAAACTTC+AGG | 0.472536 | 1_1:-20728350 | Msa0013410:CDS |
| TAGTCACAGTCAAACTTTGA+TGG | 0.474855 | 1_1:+20729405 | None:intergenic |
| TGAAGATCTGAGAGTTCTCT+GGG | 0.476135 | 1_1:+20733168 | None:intergenic |
| AAGGTTGTCCATAGGTATTA+GGG | 0.477959 | 1_1:+20732649 | None:intergenic |
| TCAGAATCCATGGTGGTTGT+TGG | 0.478334 | 1_1:+20733201 | None:intergenic |
| TGCAGACATTGCTGATGAGC+TGG | 0.479311 | 1_1:+20731041 | None:intergenic |
| AAAGCAGCTTTGAGCGTCAT+GGG | 0.481351 | 1_1:-20727819 | Msa0013410:CDS |
| TCAGTTATGATCTGAGCATC+AGG | 0.482089 | 1_1:+20732594 | None:intergenic |
| GGTTGAGAAATAAAAGTAGT+AGG | 0.483483 | 1_1:-20727639 | Msa0013410:three_prime_UTR |
| ACTTCAGGAATACCTTGAAC+AGG | 0.484401 | 1_1:-20728335 | Msa0013410:intron |
| AATCCTGGAGCCACATCAAT+CGG | 0.486016 | 1_1:-20728998 | Msa0013410:CDS |
| GATGGCCTTGTCATCATTGG+AGG | 0.491841 | 1_1:-20731628 | Msa0013410:intron |
| TGATGCGACCCATGTAGTCT+TGG | 0.492145 | 1_1:+20728362 | None:intergenic |
| ATGCTCTCAATCAGACCCTC+TGG | 0.492322 | 1_1:+20730508 | None:intergenic |
| TAATTGACAATACCTGTTCA+AGG | 0.493755 | 1_1:+20728323 | None:intergenic |
| AAGCGTTGGTCTCCTAATCC+TGG | 0.494473 | 1_1:-20729013 | Msa0013410:CDS |
| AGCTAGTCAGCTTTCACCAT+GGG | 0.495220 | 1_1:-20729848 | Msa0013410:CDS |
| TAAATTACAGTCATATTGCT+TGG | 0.495408 | 1_1:-20728536 | Msa0013410:intron |
| TGCTGGTTTGAATGGATACC+TGG | 0.497297 | 1_1:-20729254 | Msa0013410:CDS |
| AGATCTTTCCCTAATACCTA+TGG | 0.500361 | 1_1:-20732657 | Msa0013410:CDS |
| CCAGAAAGAAGGCACATACA+AGG | 0.501129 | 1_1:-20729484 | Msa0013410:CDS |
| TGTTGAAGACCAAGACTACA+TGG | 0.501354 | 1_1:-20728371 | Msa0013410:CDS |
| TGCTACCATATACTAGCTGC+TGG | 0.504321 | 1_1:-20729271 | Msa0013410:CDS |
| ATAAACAAGCGCCAGAAAGA+AGG | 0.509802 | 1_1:-20729495 | Msa0013410:CDS |
| ACAGTAGCTGGATGGATGGC+AGG | 0.514965 | 1_1:+20728971 | None:intergenic |
| TGACTCAGCACAATTGTCTC+AGG | 0.524565 | 1_1:-20729654 | Msa0013410:intron |
| GAAAGCAGCTTTGAGCGTCA+TGG | 0.524980 | 1_1:-20727820 | Msa0013410:CDS |
| CTTATAGTAGGCTCATCAGC+TGG | 0.526158 | 1_1:+20732681 | None:intergenic |
| ACCACCATTTATCAGGAGAC+AGG | 0.526931 | 1_1:-20729803 | Msa0013410:intron |
| AACTCACTTGAAGGCAAGGA+GGG | 0.527440 | 1_1:+20733115 | None:intergenic |
| GTACATGAATTCTATGGGCT+AGG | 0.527496 | 1_1:-20733423 | None:intergenic |
| AGATCTCCATTCAAAGTCAC+CGG | 0.527556 | 1_1:+20731275 | None:intergenic |
| AATTCTTACCATGTTTGGAT+GGG | 0.530181 | 1_1:+20730838 | None:intergenic |
| ACCGATTATATACCTTTGTA+GGG | 0.531671 | 1_1:+20731463 | None:intergenic |
| TCAGGTAATTCTTGGTGAGG+AGG | 0.534417 | 1_1:-20730739 | Msa0013410:intron |
| ATTGTGATTATGCAGGTGGT+TGG | 0.535844 | 1_1:-20731302 | Msa0013410:intron |
| GTACGAACCATTGTAAAGCC+AGG | 0.537334 | 1_1:-20727861 | Msa0013410:CDS |
| CACAGTCAAACTTTGATGGA+AGG | 0.538254 | 1_1:+20729409 | None:intergenic |
| CAGGACCATCAAACTGAAGC+GGG | 0.539235 | 1_1:+20728422 | None:intergenic |
| CAAGGCATCACATGTTGCAT+TGG | 0.540792 | 1_1:-20730876 | Msa0013410:CDS |
| AGATAAACTAACCTAATAGG+AGG | 0.545743 | 1_1:+20732567 | None:intergenic |
| ATAGGCTTGGCATCTGCACC+AGG | 0.546073 | 1_1:+20728403 | None:intergenic |
| AACATTAAGAGTGATAGGCT+TGG | 0.546466 | 1_1:+20728390 | None:intergenic |
| CATTCGTCTTATGGGACGCA+AGG | 0.564401 | 1_1:-20730894 | Msa0013410:CDS |
| TGAAAACTCACTTGAAGGCA+AGG | 0.565628 | 1_1:+20733111 | None:intergenic |
| ATCCACAGTAGCTGGATGGA+TGG | 0.566104 | 1_1:+20728967 | None:intergenic |
| TGAAGAATCCTGTAAACAAG+TGG | 0.566584 | 1_1:-20729216 | Msa0013410:CDS |
| AATACCATAATCAGAATCCA+TGG | 0.569143 | 1_1:+20733191 | None:intergenic |
| GCTGCTTTCAGAACCTCTTG+AGG | 0.572074 | 1_1:+20727834 | None:intergenic |
| CTATGATGACGGTGAAGCGT+TGG | 0.572709 | 1_1:-20729027 | Msa0013410:CDS |
| TCAAATCCACAGTAGCTGGA+TGG | 0.575789 | 1_1:+20728963 | None:intergenic |
| TGACATGGCGGTTAGAACTT+CGG | 0.576918 | 1_1:+20727788 | None:intergenic |
| CAAATAACATTGTGTCCACC+AGG | 0.577263 | 1_1:+20732416 | None:intergenic |
| ACAGTCAAACTTTGATGGAA+GGG | 0.578686 | 1_1:+20729410 | None:intergenic |
| TGATGCTCTCTCTGCAGAGA+AGG | 0.580031 | 1_1:-20731017 | Msa0013410:intron |
| GTTAGGGTTGAATTTGGTGA+TGG | 0.581275 | 1_1:-20732720 | Msa0013410:CDS |
| AGAACCTCTTGAGGACACCC+TGG | 0.583596 | 1_1:+20727843 | None:intergenic |
| TACGAACCATTGTAAAGCCA+GGG | 0.584554 | 1_1:-20727860 | Msa0013410:CDS |
| AGGACACCCTGGCTTTACAA+TGG | 0.586882 | 1_1:+20727854 | None:intergenic |
| TGTTCAGGTAATTCTTGGTG+AGG | 0.589535 | 1_1:-20730742 | Msa0013410:intron |
| GGTGGACACAATGTTATTTG+GGG | 0.591154 | 1_1:-20732413 | Msa0013410:CDS |
| GCCCTAAGAAAATGAGCCAA+AGG | 0.596725 | 1_1:+20732630 | None:intergenic |
| CCAGGACCATCAAACTGAAG+CGG | 0.598022 | 1_1:+20728421 | None:intergenic |
| TAGGCACTTGCATGTCGACA+TGG | 0.598775 | 1_1:-20727620 | Msa0013410:three_prime_UTR |
| TAGCTAGTCAGCTTTCACCA+TGG | 0.598932 | 1_1:-20729849 | Msa0013410:CDS |
| GGCAAGGAGGGAGTTCAGGT+TGG | 0.602957 | 1_1:+20733127 | None:intergenic |
| TGTGCAGGGAACAACTGTTA+GGG | 0.602989 | 1_1:-20732736 | Msa0013410:intron |
| GCAGACATTGCTGATGAGCT+GGG | 0.605421 | 1_1:+20731042 | None:intergenic |
| ATGAGCCAAAGGTTGTCCAT+AGG | 0.605710 | 1_1:+20732641 | None:intergenic |
| AGCAGCATTAACTTGTTCAG+TGG | 0.606084 | 1_1:+20731678 | None:intergenic |
| CAGAAAGAAGGCACATACAA+GGG | 0.606183 | 1_1:-20729483 | Msa0013410:CDS |
| TCAAATAAAGCAGAAGCCCA+TGG | 0.606957 | 1_1:+20729832 | None:intergenic |
| CAACCAATAACTACTTCCCA+AGG | 0.614163 | 1_1:+20727657 | None:intergenic |
| GATAAACTAACCTAATAGGA+GGG | 0.615627 | 1_1:+20732568 | None:intergenic |
| CCTGTAAACAAGTGGAAATG+TGG | 0.618788 | 1_1:-20729208 | Msa0013410:CDS |
| CAGTTTGTGGAAACAAATGT+CGG | 0.619001 | 1_1:-20731245 | Msa0013410:CDS |
| TCTTCAGTCCCATCCAAACA+TGG | 0.619255 | 1_1:-20730846 | Msa0013410:intron |
| GGAGTAATCCTTATTCCAGA+GGG | 0.625007 | 1_1:-20730523 | Msa0013410:CDS |
| ACCTGTCTCCTGATAAATGG+TGG | 0.625111 | 1_1:+20729802 | None:intergenic |
| TCTGGAAGACAATCTCCTGG+TGG | 0.634764 | 1_1:-20732431 | Msa0013410:CDS |
| TGGAGTAATCCTTATTCCAG+AGG | 0.640020 | 1_1:-20730524 | Msa0013410:CDS |
| GTGGTTATGATTTGCTTGGG+CGG | 0.640052 | 1_1:-20731720 | Msa0013410:CDS |
| TGTTGCAAAATGCCCTACAA+AGG | 0.640320 | 1_1:-20731475 | Msa0013410:intron |
| ATCAGGTGTGACATCAAACA+CGG | 0.641988 | 1_1:-20731526 | Msa0013410:intron |
| TGTTTATCTCTACTTCCACA+AGG | 0.642521 | 1_1:+20729511 | None:intergenic |
| AAAGCCAGGGTGTCCTCAAG+AGG | 0.643003 | 1_1:-20727847 | Msa0013410:CDS |
| TTATACCTCCAATGATGACA+AGG | 0.664015 | 1_1:+20731623 | None:intergenic |
| TCTCTCGCCAACAACCACCA+TGG | 0.664930 | 1_1:-20733208 | Msa0013410:exon |
| AAGCAGCTTTGAGCGTCATG+GGG | 0.669198 | 1_1:-20727818 | Msa0013410:CDS |
| AAACTCACTTGAAGGCAAGG+AGG | 0.675909 | 1_1:+20733114 | None:intergenic |
| TTATTGTATATAGAAACAGA+TGG | 0.677554 | 1_1:+20727563 | None:intergenic |
| GTTCAGGCTAGATCAGAACA+AGG | 0.679660 | 1_1:-20730663 | Msa0013410:intron |
| GTTGCCGGAAGAAGATGACA+TGG | 0.683585 | 1_1:+20727773 | None:intergenic |
| GAAACTTCTAGCATACCTTG+TGG | 0.691231 | 1_1:-20729526 | Msa0013410:CDS |
| GTTGAAGACCAAGACTACAT+GGG | 0.695040 | 1_1:-20728370 | Msa0013410:CDS |
| TGAACTTTAGGCTATGATGA+CGG | 0.695307 | 1_1:-20729038 | Msa0013410:intron |
| ACCATAATCAGAATCCATGG+TGG | 0.743675 | 1_1:+20733194 | None:intergenic |
| GCCGGAAGAAGATGACATGG+CGG | 0.748833 | 1_1:+20727776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATACAAAGAAAAAAATT+AGG | - | chr1_1:20727162-20727181 | Msa0013410:intron | 10.0% |
| !! | AATAACATGTTAAAAAATTT+CGG | + | chr1_1:20728746-20728765 | None:intergenic | 10.0% |
| !!! | TTTATTTAATCTTTTATTAC+AGG | + | chr1_1:20730283-20730302 | None:intergenic | 10.0% |
| !! | ATCTAATAAAAAATAAACAA+TGG | + | chr1_1:20733053-20733072 | None:intergenic | 10.0% |
| !!! | TTTTTTATTCTTTTTTTTCC+TGG | - | chr1_1:20729915-20729934 | Msa0013410:intron | 15.0% |
| !!! | GTATATATTTTGTTTAACTA+TGG | - | chr1_1:20730739-20730758 | Msa0013410:intron | 15.0% |
| !!! | GGTTTTATATAATATATCTA+CGG | - | chr1_1:20731403-20731422 | Msa0013410:intron | 15.0% |
| !! | AAAAAACACATTATCTAATA+TGG | + | chr1_1:20731432-20731451 | None:intergenic | 15.0% |
| !!! | CTTTTGTTATAGAAATAATA+AGG | + | chr1_1:20731679-20731698 | None:intergenic | 15.0% |
| !! | TATAATCTCATTTAATGATA+TGG | - | chr1_1:20732326-20732345 | Msa0013410:intron | 15.0% |
| !!! | TTTTTTCACCTAAAATTTTA+TGG | + | chr1_1:20733138-20733157 | None:intergenic | 15.0% |
| !!! | AAATTTTAGGTGAAAAAAAA+AGG | - | chr1_1:20733140-20733159 | Msa0013410:CDS | 15.0% |
| !! | AAATTTGAATTTATAACCAA+GGG | + | chr1_1:20733261-20733280 | None:intergenic | 15.0% |
| !! | AAAATTTGAATTTATAACCA+AGG | + | chr1_1:20733262-20733281 | None:intergenic | 15.0% |
| !!! | TTGGTTATAAATTCAAATTT+TGG | - | chr1_1:20733261-20733280 | Msa0013410:five_prime_UTR | 15.0% |
| !!! | TTTATATAAAACCAATTTTG+TGG | + | chr1_1:20733290-20733309 | None:intergenic | 15.0% |
| !! | TACAAAGAAAAAAATTAGGT+AGG | - | chr1_1:20727166-20727185 | Msa0013410:intron | 20.0% |
| !!! | TTTTAGGTACAACATAAAAA+GGG | - | chr1_1:20727206-20727225 | Msa0013410:intron | 20.0% |
| !!! | TTTTTGAGTTTTGTTATGTT+GGG | + | chr1_1:20727235-20727254 | None:intergenic | 20.0% |
| !!! | TTTTTATGAGATTTAGATCT+TGG | - | chr1_1:20727439-20727458 | Msa0013410:intron | 20.0% |
| !!! | TTTTATGAGATTTAGATCTT+GGG | - | chr1_1:20727440-20727459 | Msa0013410:intron | 20.0% |
| !!! | TTTTTGATTTGTTTTTGACT+TGG | - | chr1_1:20727489-20727508 | Msa0013410:three_prime_UTR | 20.0% |
| !!! | TTTTGATTTGTTTTTGACTT+GGG | - | chr1_1:20727490-20727509 | Msa0013410:three_prime_UTR | 20.0% |
| !!! | TTTTTTTGTTTTTGGATTGT+TGG | - | chr1_1:20727543-20727562 | Msa0013410:three_prime_UTR | 20.0% |
| !!! | TTTTTTGTTTTTGGATTGTT+GGG | - | chr1_1:20727544-20727563 | Msa0013410:three_prime_UTR | 20.0% |
| !!! | TTTTATGTTTTTTTGTGAGA+TGG | - | chr1_1:20727583-20727602 | Msa0013410:three_prime_UTR | 20.0% |
| !!! | TTTATGTTTTTTTGTGAGAT+GGG | - | chr1_1:20727584-20727603 | Msa0013410:three_prime_UTR | 20.0% |
| !!! | TAAAGTTTTGATTTTCAGAT+TGG | - | chr1_1:20727707-20727726 | Msa0013410:three_prime_UTR | 20.0% |
| !! | AATAGATAAACTAACCTAAT+AGG | + | chr1_1:20727951-20727970 | None:intergenic | 20.0% |
| !!! | TGATTTGTTGATTTTTTTGT+CGG | - | chr1_1:20727977-20727996 | Msa0013410:intron | 20.0% |
| !! | TTTAAAAAACTATGTATGCT+TGG | - | chr1_1:20728254-20728273 | Msa0013410:intron | 20.0% |
| !! | TGATTGACTAATAATAACAA+TGG | + | chr1_1:20728714-20728733 | None:intergenic | 20.0% |
| !! | TACAATGAATGTTCTTTATT+AGG | - | chr1_1:20728770-20728789 | Msa0013410:intron | 20.0% |
| !! | CAGTAATAATTTACTGATAA+TGG | - | chr1_1:20729185-20729204 | Msa0013410:intron | 20.0% |
| !! | ATTCTCAATAGTGTTTAAAT+AGG | + | chr1_1:20729338-20729357 | None:intergenic | 20.0% |
| !!! | TATTTTTGTTTTGTTTACTC+AGG | - | chr1_1:20729441-20729460 | Msa0013410:CDS | 20.0% |
| !! | TCATTTCATATGTATTTACT+AGG | + | chr1_1:20729540-20729559 | None:intergenic | 20.0% |
| !! | TTATTATTTCATTCGTCTTA+TGG | - | chr1_1:20729609-20729628 | Msa0013410:intron | 20.0% |
| !! | TATTATTTCATTCGTCTTAT+GGG | - | chr1_1:20729610-20729629 | Msa0013410:intron | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+GGG | + | chr1_1:20730199-20730218 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCAAAAC+AGG | + | chr1_1:20730200-20730219 | None:intergenic | 20.0% |
| !! | AAGATTAAATAAAGTCAAAC+TGG | - | chr1_1:20730290-20730309 | Msa0013410:intron | 20.0% |
| !! | TCAAATAAGTCAATCTAAAT+AGG | - | chr1_1:20730505-20730524 | Msa0013410:CDS | 20.0% |
| !!! | TTGATTGTTTCTTATGAATA+TGG | - | chr1_1:20730548-20730567 | Msa0013410:intron | 20.0% |
| !!! | TAATTTGTTGATATTATTGC+AGG | - | chr1_1:20731204-20731223 | Msa0013410:intron | 20.0% |
| !! | TAAATCACAATTGTTTGTAA+AGG | + | chr1_1:20732239-20732258 | None:intergenic | 20.0% |
| !! | ATCGAAAAATTCAAATCTTA+CGG | - | chr1_1:20732268-20732287 | Msa0013410:intron | 20.0% |
| !!! | GATGTTTATTGAGATATTTT+AGG | + | chr1_1:20732447-20732466 | None:intergenic | 20.0% |
| !!! | GTATTCTTTTAAGAATTTTC+TGG | - | chr1_1:20732796-20732815 | Msa0013410:intron | 20.0% |
| !! | TTATTGTATATAGAAACAGA+TGG | + | chr1_1:20732952-20732971 | None:intergenic | 20.0% |
| !!! | AGGCTTCTAAAAAATTAATT+TGG | - | chr1_1:20733160-20733179 | Msa0013410:CDS | 20.0% |
| !!! | TTTGAAGTAGTTGTTGTTTT+AGG | - | chr1_1:20727190-20727209 | Msa0013410:intron | 25.0% |
| !!! | GTTTTAGGTACAACATAAAA+AGG | - | chr1_1:20727205-20727224 | Msa0013410:intron | 25.0% |
| !!! | GTTTTTGAGTTTTGTTATGT+TGG | + | chr1_1:20727236-20727255 | None:intergenic | 25.0% |
| !!! | GGTTTTGAATTTGATCAAAT+GGG | - | chr1_1:20727511-20727530 | Msa0013410:three_prime_UTR | 25.0% |
| !!! | GTTTTGAATTTGATCAAATG+GGG | - | chr1_1:20727512-20727531 | Msa0013410:three_prime_UTR | 25.0% |
| !!! | TGGACTTGTTTTTTTGTTTT+TGG | - | chr1_1:20727535-20727554 | Msa0013410:three_prime_UTR | 25.0% |
| !!! | ATTTGAATGTAATGGACTAA+TGG | - | chr1_1:20727616-20727635 | Msa0013410:three_prime_UTR | 25.0% |
| !!! | TTTGAATGTAATGGACTAAT+GGG | - | chr1_1:20727617-20727636 | Msa0013410:three_prime_UTR | 25.0% |
| !!! | TGTTTTTGACTTTGATGAAA+TGG | - | chr1_1:20727655-20727674 | Msa0013410:three_prime_UTR | 25.0% |
| !!! | GTTTTTGACTTTGATGAAAT+GGG | - | chr1_1:20727656-20727675 | Msa0013410:three_prime_UTR | 25.0% |
| !!! | TTTTTGACTTTGATGAAATG+GGG | - | chr1_1:20727657-20727676 | Msa0013410:three_prime_UTR | 25.0% |
| !!! | AATAACGGTAATTTTAGTCT+TGG | + | chr1_1:20728326-20728345 | None:intergenic | 25.0% |
| !!! | AAAAAAACTATGGTTTTGAC+TGG | - | chr1_1:20728351-20728370 | Msa0013410:CDS | 25.0% |
| ! | TCAATATAATTGCATGTGTT+TGG | + | chr1_1:20728528-20728547 | None:intergenic | 25.0% |
| ! | TAACAAATATCTGCATTACA+TGG | + | chr1_1:20728551-20728570 | None:intergenic | 25.0% |
| !! | TCTATTTTCTCAGAAAACTT+TGG | - | chr1_1:20728629-20728648 | Msa0013410:intron | 25.0% |
| ! | AATGAATGTTCTTTATTAGG+TGG | - | chr1_1:20728773-20728792 | Msa0013410:intron | 25.0% |
| !! | GCTGAATTTTGTATTTTATC+AGG | - | chr1_1:20728969-20728988 | Msa0013410:intron | 25.0% |
| ! | AACACTATTGAGAATTAACT+TGG | - | chr1_1:20729343-20729362 | Msa0013410:intron | 25.0% |
| ! | ACACTATTGAGAATTAACTT+GGG | - | chr1_1:20729344-20729363 | Msa0013410:intron | 25.0% |
| ! | AAAAGAAAATTCAGTCAGAA+AGG | + | chr1_1:20729583-20729602 | None:intergenic | 25.0% |
| ! | ACATTAATTCTTACCATGTT+TGG | + | chr1_1:20729682-20729701 | None:intergenic | 25.0% |
| ! | CTTTCGTGAAATTTCAAAAA+GGG | + | chr1_1:20729817-20729836 | None:intergenic | 25.0% |
| ! | TCTTTCGTGAAATTTCAAAA+AGG | + | chr1_1:20729818-20729837 | None:intergenic | 25.0% |
| ! | AAAAAAGAAAATGTGAAGAC+TGG | + | chr1_1:20729900-20729919 | None:intergenic | 25.0% |
| !! | TTTTGTTCAGACAAATATCA+TGG | - | chr1_1:20729968-20729987 | Msa0013410:intron | 25.0% |
| !! | CTTGAATATTAGAGTATTCA+TGG | - | chr1_1:20730108-20730127 | Msa0013410:intron | 25.0% |
| !! | ATTATTTTCATAAGCTTTCC+AGG | + | chr1_1:20730351-20730370 | None:intergenic | 25.0% |
| ! | AATAATCTGAAAACAACTTC+TGG | - | chr1_1:20730365-20730384 | Msa0013410:intron | 25.0% |
| ! | CAACTAACATCAATGAAAAA+AGG | + | chr1_1:20730531-20730550 | None:intergenic | 25.0% |
| !!! | TATGATTAACAAAAAGCATC+TGG | + | chr1_1:20730893-20730912 | None:intergenic | 25.0% |
| !! | TAGGTATTAGGTTAGTTAAT+CGG | - | chr1_1:20731162-20731181 | Msa0013410:intron | 25.0% |
| ! | AAAAAGAAACGTACTGAAAT+TGG | + | chr1_1:20731337-20731356 | None:intergenic | 25.0% |
| ! | GATAAATAGCTTAGTTAAGT+GGG | - | chr1_1:20731641-20731660 | Msa0013410:CDS | 25.0% |
| ! | TAAATTACAGTCATATTGCT+TGG | - | chr1_1:20731976-20731995 | Msa0013410:intron | 25.0% |
| ! | AGCATTTCTAAATACTGAAT+CGG | - | chr1_1:20732300-20732319 | Msa0013410:intron | 25.0% |
| ! | TCTATGTAGTGAGATATAAT+TGG | - | chr1_1:20732465-20732484 | Msa0013410:intron | 25.0% |
| !! | TTTTTAACATTTTGTAGCCT+TGG | - | chr1_1:20732838-20732857 | Msa0013410:intron | 25.0% |
| !! | TTTTAACATTTTGTAGCCTT+GGG | - | chr1_1:20732839-20732858 | Msa0013410:intron | 25.0% |
| !!! | GTTTTAGGCCATAAAATTTT+AGG | - | chr1_1:20733127-20733146 | Msa0013410:CDS | 25.0% |
| ! | AGCTTAATTGATTACCAAAA+AGG | - | chr1_1:20733226-20733245 | Msa0013410:five_prime_UTR | 25.0% |
| ! | TTGAAGCAAAAAATTCAATG+TGG | + | chr1_1:20733342-20733361 | None:intergenic | 25.0% |
| AGAGATACTATGTTCTACTA+TGG | + | chr1_1:20727289-20727308 | None:intergenic | 30.0% | |
| AATACCATAATCAGAATCCA+TGG | + | chr1_1:20727324-20727343 | None:intergenic | 30.0% | |
| TTGAATGAAAACTCACTTGA+AGG | + | chr1_1:20727409-20727428 | None:intergenic | 30.0% | |
| !!! | GGGTTTTGAATTTGATCAAA+TGG | - | chr1_1:20727510-20727529 | Msa0013410:three_prime_UTR | 30.0% |
| GGTGATGAATTTGAATGTAA+TGG | - | chr1_1:20727608-20727627 | Msa0013410:three_prime_UTR | 30.0% | |
| !! | TTGAATGTAATGGACTAATG+GGG | - | chr1_1:20727618-20727637 | Msa0013410:three_prime_UTR | 30.0% |
| !!! | AGTTTTGATTTTCAGATTGG+TGG | - | chr1_1:20727710-20727729 | Msa0013410:three_prime_UTR | 30.0% |
| TGATGAATTTGAATGGAATG+AGG | - | chr1_1:20727733-20727752 | Msa0013410:three_prime_UTR | 30.0% | |
| GATAAACTAACCTAATAGGA+GGG | + | chr1_1:20727947-20727966 | None:intergenic | 30.0% | |
| AGATAAACTAACCTAATAGG+AGG | + | chr1_1:20727948-20727967 | None:intergenic | 30.0% | |
| ! | AATCCTAAGAATGTTTTGCT+TGG | - | chr1_1:20728147-20728166 | Msa0013410:intron | 30.0% |
| AATCCAAGCAAAACATTCTT+AGG | + | chr1_1:20728153-20728172 | None:intergenic | 30.0% | |
| ! | AATGTTTTGCTTGGATTTCT+TGG | - | chr1_1:20728156-20728175 | Msa0013410:intron | 30.0% |
| GAGATATCAATCGTTAAGAT+CGG | + | chr1_1:20728194-20728213 | None:intergenic | 30.0% | |
| AAAACTATGTATGCTTGGAT+TGG | - | chr1_1:20728259-20728278 | Msa0013410:intron | 30.0% | |
| !! | TTTTGGTTAAAGCTACACTT+TGG | - | chr1_1:20728405-20728424 | Msa0013410:CDS | 30.0% |
| ! | TGCAACAATTTGAAACTTGA+TGG | - | chr1_1:20728866-20728885 | Msa0013410:intron | 30.0% |
| ACCGATTATATACCTTTGTA+GGG | + | chr1_1:20729052-20729071 | None:intergenic | 30.0% | |
| ATTTGTCCAATGATCTGAAA+TGG | - | chr1_1:20729088-20729107 | Msa0013410:intron | 30.0% | |
| GATATTCCATTTCAGATCAT+TGG | + | chr1_1:20729097-20729116 | None:intergenic | 30.0% | |
| AATGGTTATTGTGATTATGC+AGG | - | chr1_1:20729203-20729222 | Msa0013410:CDS | 30.0% | |
| AGATCTTAAAAACCAGTTTG+TGG | - | chr1_1:20729254-20729273 | Msa0013410:CDS | 30.0% | |
| ! | TCTAAGGTATATTTCCTATC+AGG | - | chr1_1:20729303-20729322 | Msa0013410:intron | 30.0% |
| CTAAGGTATATTTCCTATCA+GGG | - | chr1_1:20729304-20729323 | Msa0013410:intron | 30.0% | |
| ! | CACTATTGAGAATTAACTTG+GGG | - | chr1_1:20729345-20729364 | Msa0013410:intron | 30.0% |
| AATTCTTACCATGTTTGGAT+GGG | + | chr1_1:20729677-20729696 | None:intergenic | 30.0% | |
| TAATTCTTACCATGTTTGGA+TGG | + | chr1_1:20729678-20729697 | None:intergenic | 30.0% | |
| CAAACAATTGAACAAACACT+CGG | + | chr1_1:20729721-20729740 | None:intergenic | 30.0% | |
| TTATTTACTATGCTCTGTTC+AGG | - | chr1_1:20729755-20729774 | Msa0013410:intron | 30.0% | |
| TTTCCTATTGTTCTGTAATC+GGG | + | chr1_1:20730086-20730105 | None:intergenic | 30.0% | |
| GTTTCCTATTGTTCTGTAAT+CGG | + | chr1_1:20730087-20730106 | None:intergenic | 30.0% | |
| ! | ATGTTTCTAAAAGCCATTTG+AGG | - | chr1_1:20730137-20730156 | Msa0013410:intron | 30.0% |
| GACATTAAACACTTGTGAAA+CGG | + | chr1_1:20730426-20730445 | None:intergenic | 30.0% | |
| GACATTAAACACTTGTGAAA+CGG | + | chr1_1:20730426-20730445 | None:intergenic | 30.0% | |
| ATGCAATCTTAATCCATTCT+TGG | - | chr1_1:20730577-20730596 | Msa0013410:intron | 30.0% | |
| AATTTCTACCACCATTTATC+AGG | - | chr1_1:20730702-20730721 | Msa0013410:CDS | 30.0% | |
| ! | TGATTTAGTTTCCTTTGCTT+AGG | - | chr1_1:20731143-20731162 | Msa0013410:intron | 30.0% |
| TTGATATTATTGCAGGTTCT+TGG | - | chr1_1:20731211-20731230 | Msa0013410:intron | 30.0% | |
| ATGTGTTTGCAATGAACTTT+AGG | - | chr1_1:20731462-20731481 | Msa0013410:intron | 30.0% | |
| CTAAGCTATTTATCCAAACA+GGG | + | chr1_1:20731635-20731654 | None:intergenic | 30.0% | |
| ACTAAGCTATTTATCCAAAC+AGG | + | chr1_1:20731636-20731655 | None:intergenic | 30.0% | |
| GGATAAATAGCTTAGTTAAG+TGG | - | chr1_1:20731640-20731659 | Msa0013410:CDS | 30.0% | |
| !! | GCTATTTTCATAAGCTATCT+TGG | - | chr1_1:20731724-20731743 | Msa0013410:intron | 30.0% |
| TTTGAGAGAACATAGGAAAA+CGG | + | chr1_1:20731797-20731816 | None:intergenic | 30.0% | |
| CTTAGCATATCTACAAACAA+TGG | + | chr1_1:20731840-20731859 | None:intergenic | 30.0% | |
| AATAAAGTCAAGAGTCTGTT+TGG | + | chr1_1:20731868-20731887 | None:intergenic | 30.0% | |
| GACGATATTTATAGAAATCC+AGG | - | chr1_1:20732067-20732086 | Msa0013410:intron | 30.0% | |
| TCTTCAACATTAAGAGTGAT+AGG | + | chr1_1:20732130-20732149 | None:intergenic | 30.0% | |
| TAATTGACAATACCTGTTCA+AGG | + | chr1_1:20732192-20732211 | None:intergenic | 30.0% | |
| TTAGGAAGTGATAAACAAAC+TGG | + | chr1_1:20732429-20732448 | None:intergenic | 30.0% | |
| GGTTGAGAAATAAAAGTAGT+AGG | - | chr1_1:20732873-20732892 | Msa0013410:intron | 30.0% | |
| TCCAAACACAAATTGTCAAT+TGG | + | chr1_1:20732998-20733017 | None:intergenic | 30.0% | |
| TATCATAGCTTGAGTTATCA+AGG | - | chr1_1:20733073-20733092 | Msa0013410:intron | 30.0% | |
| TTTATAACCAAGGGTAATCA+AGG | + | chr1_1:20733252-20733271 | None:intergenic | 30.0% | |
| !! | AATTTTGGTCTCCACAAAAT+TGG | - | chr1_1:20733276-20733295 | Msa0013410:five_prime_UTR | 30.0% |
| AATATTATAACTCCCACGTT+CGG | + | chr1_1:20733383-20733402 | None:intergenic | 30.0% | |
| TTGAATTTGATCAAATGGGG+TGG | - | chr1_1:20727515-20727534 | Msa0013410:three_prime_UTR | 35.0% | |
| !!! | ATGTTTTTTTGTGAGATGGG+TGG | - | chr1_1:20727587-20727606 | Msa0013410:three_prime_UTR | 35.0% |
| !!! | GTGGACTTGTTTTTGGTTTT+TGG | - | chr1_1:20727679-20727698 | Msa0013410:three_prime_UTR | 35.0% |
| !! | TTGGTGGTGATGAATTTGAA+TGG | - | chr1_1:20727726-20727745 | Msa0013410:three_prime_UTR | 35.0% |
| !!! | TTGTTACTGTTTTGATGTGC+AGG | - | chr1_1:20727761-20727780 | Msa0013410:CDS | 35.0% |
| !!! | TGTTACTGTTTTGATGTGCA+GGG | - | chr1_1:20727762-20727781 | Msa0013410:CDS | 35.0% |
| ACAACTGTTAGGGTTGAATT+TGG | - | chr1_1:20727786-20727805 | Msa0013410:CDS | 35.0% | |
| GGGAAAGATCTACTTATAGT+AGG | + | chr1_1:20727846-20727865 | None:intergenic | 35.0% | |
| AGATCTTTCCCTAATACCTA+TGG | - | chr1_1:20727855-20727874 | Msa0013410:CDS | 35.0% | |
| AAGGTTGTCCATAGGTATTA+GGG | + | chr1_1:20727866-20727885 | None:intergenic | 35.0% | |
| AAAGGTTGTCCATAGGTATT+AGG | + | chr1_1:20727867-20727886 | None:intergenic | 35.0% | |
| TAATACCTATGGACAACCTT+TGG | - | chr1_1:20727866-20727885 | Msa0013410:intron | 35.0% | |
| !! | AACCTTTGGCTCATTTTCTT+AGG | - | chr1_1:20727880-20727899 | Msa0013410:intron | 35.0% |
| !! | ACCTTTGGCTCATTTTCTTA+GGG | - | chr1_1:20727881-20727900 | Msa0013410:intron | 35.0% |
| !!! | AGGGTTGGAATTGTTTTTTC+TGG | - | chr1_1:20728063-20728082 | Msa0013410:intron | 35.0% |
| ! | TGGTGGACACAATGTTATTT+GGG | - | chr1_1:20728098-20728117 | Msa0013410:intron | 35.0% |
| TGGAATGCGTGAAAATTGAT+TGG | + | chr1_1:20728306-20728325 | None:intergenic | 35.0% | |
| !!! | AAAACTATGGTTTTGACTGG+CGG | - | chr1_1:20728354-20728373 | Msa0013410:CDS | 35.0% |
| ! | GCAGTGAATCATTGTGATTT+TGG | - | chr1_1:20728388-20728407 | Msa0013410:CDS | 35.0% |
| TTGAAAAACAGTGATGCCAT+GGG | + | chr1_1:20728499-20728518 | None:intergenic | 35.0% | |
| ATTGAAAAACAGTGATGCCA+TGG | + | chr1_1:20728500-20728519 | None:intergenic | 35.0% | |
| ! | ATGCTCTTTTTCCTTTCTTC+AGG | - | chr1_1:20728594-20728613 | Msa0013410:intron | 35.0% |
| ! | TCTTTTTCCTTTCTTCAGGT+GGG | - | chr1_1:20728598-20728617 | Msa0013410:intron | 35.0% |
| CTCTCCACATACAAAAATCA+AGG | - | chr1_1:20728669-20728688 | Msa0013410:intron | 35.0% | |
| ! | CCAACCTTGATTTTTGTATG+TGG | + | chr1_1:20728676-20728695 | None:intergenic | 35.0% |
| CCACATACAAAAATCAAGGT+TGG | - | chr1_1:20728673-20728692 | Msa0013410:intron | 35.0% | |
| !! | TTAGGTGGTTATGATTTGCT+TGG | - | chr1_1:20728788-20728807 | Msa0013410:intron | 35.0% |
| !! | TAGGTGGTTATGATTTGCTT+GGG | - | chr1_1:20728789-20728808 | Msa0013410:intron | 35.0% |
| TTATACCTCCAATGATGACA+AGG | + | chr1_1:20728892-20728911 | None:intergenic | 35.0% | |
| ! | ATTGGAGGTATAATTCTTCC+TGG | - | chr1_1:20728899-20728918 | Msa0013410:intron | 35.0% |
| GCAACAGTCACATCTTTAAA+AGG | - | chr1_1:20728935-20728954 | Msa0013410:intron | 35.0% | |
| ! | GCCCTACAAAGGTATATAAT+CGG | - | chr1_1:20729048-20729067 | Msa0013410:intron | 35.0% |
| GACCGATTATATACCTTTGT+AGG | + | chr1_1:20729053-20729072 | None:intergenic | 35.0% | |
| ! | AGGTATATAATCGGTCGTTT+TGG | - | chr1_1:20729057-20729076 | Msa0013410:intron | 35.0% |
| CAGTTTGTGGAAACAAATGT+CGG | - | chr1_1:20729267-20729286 | Msa0013410:CDS | 35.0% | |
| ! | CGGCTTTGATACAATTTCTA+AGG | - | chr1_1:20729287-20729306 | Msa0013410:CDS | 35.0% |
| !! | AGTCAGAAAGGTACTTCAAA+AGG | + | chr1_1:20729571-20729590 | None:intergenic | 35.0% |
| ATATCAGATCTCAAAAGACC+AGG | + | chr1_1:20729936-20729955 | None:intergenic | 35.0% | |
| ! | TTCAAAAGTGCATACACTTC+AGG | + | chr1_1:20730031-20730050 | None:intergenic | 35.0% |
| ! | TGAAGTGTATGCACTTTTGA+AGG | - | chr1_1:20730030-20730049 | Msa0013410:intron | 35.0% |
| CAGAGAATGAGAGTTTGATT+TGG | - | chr1_1:20730173-20730192 | Msa0013410:intron | 35.0% | |
| TTTCATAAGCTTTCCAGGAT+AGG | + | chr1_1:20730346-20730365 | None:intergenic | 35.0% | |
| AAACACTTGTGAAACGGTTT+AGG | + | chr1_1:20730420-20730439 | None:intergenic | 35.0% | |
| AAACACTTGTGAAACGGTTT+AGG | + | chr1_1:20730420-20730439 | None:intergenic | 35.0% | |
| ! | GCAAAAGGTTTTTCCAAGAA+TGG | + | chr1_1:20730593-20730612 | None:intergenic | 35.0% |
| TGAATTTCCTGAGATGCAAA+AGG | + | chr1_1:20730608-20730627 | None:intergenic | 35.0% | |
| ! | ATTCACGTTTTACTCAGACA+AGG | - | chr1_1:20730623-20730642 | Msa0013410:intron | 35.0% |
| TTTACCTGTCTCCTGATAAA+TGG | + | chr1_1:20730716-20730735 | None:intergenic | 35.0% | |
| AAAGGAGAACAAAGACATGA+AGG | + | chr1_1:20730937-20730956 | None:intergenic | 35.0% | |
| TGTTTATCTCTACTTCCACA+AGG | + | chr1_1:20731004-20731023 | None:intergenic | 35.0% | |
| !!! | AATGCGATTTGCCACTTTTT+TGG | - | chr1_1:20731062-20731081 | Msa0013410:intron | 35.0% |
| GAGCTTGATATCCAAAAAAG+TGG | + | chr1_1:20731076-20731095 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGATATCAAGCTCG+AGG | - | chr1_1:20731077-20731096 | Msa0013410:intron | 35.0% |
| TAGTCACAGTCAAACTTTGA+TGG | + | chr1_1:20731110-20731129 | None:intergenic | 35.0% | |
| GTTTCCTTTGCTTAGGTATT+AGG | - | chr1_1:20731150-20731169 | Msa0013410:intron | 35.0% | |
| CTAACCTAATACCTAAGCAA+AGG | + | chr1_1:20731157-20731176 | None:intergenic | 35.0% | |
| TGAAGAATCCTGTAAACAAG+TGG | - | chr1_1:20731296-20731315 | Msa0013410:intron | 35.0% | |
| ! | TGTTTATTTCTTGTGCTCAG+TGG | - | chr1_1:20731365-20731384 | Msa0013410:intron | 35.0% |
| CAGTGGTTATTCATTCATGA+TGG | - | chr1_1:20731382-20731401 | Msa0013410:intron | 35.0% | |
| TGAACTTTAGGCTATGATGA+CGG | - | chr1_1:20731474-20731493 | Msa0013410:intron | 35.0% | |
| ! | GTCATATTGCTTGGTAGTTA+AGG | - | chr1_1:20731985-20732004 | Msa0013410:intron | 35.0% |
| ! | TGATGTATGTTGTTGATTGC+AGG | - | chr1_1:20732011-20732030 | Msa0013410:intron | 35.0% |
| ! | AAATGCGACAAGCTTTCTTT+TGG | - | chr1_1:20732045-20732064 | Msa0013410:intron | 35.0% |
| AACATTAAGAGTGATAGGCT+TGG | + | chr1_1:20732125-20732144 | None:intergenic | 35.0% | |
| AACTGGCATTGTAGTGAAAT+AGG | + | chr1_1:20732412-20732431 | None:intergenic | 35.0% | |
| CAACAAGAAATGTGGATCAT+GGG | + | chr1_1:20732559-20732578 | None:intergenic | 35.0% | |
| ACAACAAGAAATGTGGATCA+TGG | + | chr1_1:20732560-20732579 | None:intergenic | 35.0% | |
| AACTTGCACAACAAGAAATG+TGG | + | chr1_1:20732567-20732586 | None:intergenic | 35.0% | |
| ! | TCACTCTGAATGTGACATTT+TGG | - | chr1_1:20732768-20732787 | Msa0013410:intron | 35.0% |
| GCCAATTGACAATTTGTGTT+TGG | - | chr1_1:20732994-20733013 | Msa0013410:intron | 35.0% | |
| ACCACCATGGATTCTGATTA+TGG | - | chr1_1:20727317-20727336 | Msa0013410:intron | 40.0% | |
| ACCATAATCAGAATCCATGG+TGG | + | chr1_1:20727321-20727340 | None:intergenic | 40.0% | |
| TGAAGATCTGAGAGTTCTCT+GGG | + | chr1_1:20727347-20727366 | None:intergenic | 40.0% | |
| TTGAAGATCTGAGAGTTCTC+TGG | + | chr1_1:20727348-20727367 | None:intergenic | 40.0% | |
| TGAAAACTCACTTGAAGGCA+AGG | + | chr1_1:20727404-20727423 | None:intergenic | 40.0% | |
| TTGACTTTGATGAAATGGGG+TGG | - | chr1_1:20727660-20727679 | Msa0013410:three_prime_UTR | 40.0% | |
| !! | AAATGGGGTGGACTTGTTTT+TGG | - | chr1_1:20727527-20727546 | Msa0013410:three_prime_UTR | 40.0% |
| ! | GTTAGGGTTGAATTTGGTGA+TGG | - | chr1_1:20727792-20727811 | Msa0013410:CDS | 40.0% |
| TCAGTTATGATCTGAGCATC+AGG | + | chr1_1:20727921-20727940 | None:intergenic | 40.0% | |
| TCACAAGTTTCATTGTCGCA+GGG | - | chr1_1:20728044-20728063 | Msa0013410:intron | 40.0% | |
| !! | TTTTCTGGAAGACAATCTCC+TGG | - | chr1_1:20728078-20728097 | Msa0013410:intron | 40.0% |
| CAAATAACATTGTGTCCACC+AGG | + | chr1_1:20728099-20728118 | None:intergenic | 40.0% | |
| ! | CTGGTGGACACAATGTTATT+TGG | - | chr1_1:20728097-20728116 | Msa0013410:intron | 40.0% |
| ! | GGTGGACACAATGTTATTTG+GGG | - | chr1_1:20728099-20728118 | Msa0013410:intron | 40.0% |
| TTCGTGCATGTTAGGAATCA+TGG | + | chr1_1:20728459-20728478 | None:intergenic | 40.0% | |
| !! | CATGGGTTAGCAAAATTCTC+CGG | + | chr1_1:20728482-20728501 | None:intergenic | 40.0% |
| ! | CTCTTTTTCCTTTCTTCAGG+TGG | - | chr1_1:20728597-20728616 | Msa0013410:intron | 40.0% |
| !! | AGCAGCATTAACTTGTTCAG+TGG | + | chr1_1:20728837-20728856 | None:intergenic | 40.0% |
| TCTTCCTGGATCTTCATCTA+TGG | - | chr1_1:20728913-20728932 | Msa0013410:intron | 40.0% | |
| ATCAGGTGTGACATCAAACA+CGG | - | chr1_1:20728986-20729005 | Msa0013410:CDS | 40.0% | |
| TGTTGCAAAATGCCCTACAA+AGG | - | chr1_1:20729037-20729056 | Msa0013410:intron | 40.0% | |
| GGTTATTGTGATTATGCAGG+TGG | - | chr1_1:20729206-20729225 | Msa0013410:CDS | 40.0% | |
| ATTGTGATTATGCAGGTGGT+TGG | - | chr1_1:20729210-20729229 | Msa0013410:CDS | 40.0% | |
| AGATCTCCATTCAAAGTCAC+CGG | + | chr1_1:20729240-20729259 | None:intergenic | 40.0% | |
| CGACATTTGTTTCCACAAAC+TGG | + | chr1_1:20729269-20729288 | None:intergenic | 40.0% | |
| ATAGGAGTTGTAACCCTGAT+AGG | + | chr1_1:20729320-20729339 | None:intergenic | 40.0% | |
| CACTCGGAAATAAATGATGC+AGG | + | chr1_1:20729705-20729724 | None:intergenic | 40.0% | |
| TGCTCTGTTCAGGTAATTCT+TGG | - | chr1_1:20729765-20729784 | Msa0013410:intron | 40.0% | |
| TGTTCAGGTAATTCTTGGTG+AGG | - | chr1_1:20729770-20729789 | Msa0013410:intron | 40.0% | |
| AAAGATTGCTGATGCAGTTC+AGG | - | chr1_1:20729833-20729852 | Msa0013410:CDS | 40.0% | |
| TGGAGTAATCCTTATTCCAG+AGG | - | chr1_1:20729988-20730007 | Msa0013410:intron | 40.0% | |
| GGAGTAATCCTTATTCCAGA+GGG | - | chr1_1:20729989-20730008 | Msa0013410:intron | 40.0% | |
| TATTGTTCTGTAATCGGGTG+GGG | + | chr1_1:20730081-20730100 | None:intergenic | 40.0% | |
| CTATTGTTCTGTAATCGGGT+GGG | + | chr1_1:20730082-20730101 | None:intergenic | 40.0% | |
| AAAGCTTCAACAGCCTCAAA+TGG | + | chr1_1:20730153-20730172 | None:intergenic | 40.0% | |
| !! | GCTGTTTTCATAACCTATCC+TGG | - | chr1_1:20730330-20730349 | Msa0013410:intron | 40.0% |
| ! | GGAAAAACCTTTTGCATCTC+AGG | - | chr1_1:20730598-20730617 | Msa0013410:intron | 40.0% |
| TCAAATAAAGCAGAAGCCCA+TGG | + | chr1_1:20730683-20730702 | None:intergenic | 40.0% | |
| ! | AACAAACTTGACTCGAGTCA+AGG | + | chr1_1:20730765-20730784 | None:intergenic | 40.0% |
| TTTCTCAGTCTCAATCTGCA+AGG | + | chr1_1:20730970-20730989 | None:intergenic | 40.0% | |
| GAAACTTCTAGCATACCTTG+TGG | - | chr1_1:20730986-20731005 | Msa0013410:intron | 40.0% | |
| ATAAACAAGCGCCAGAAAGA+AGG | - | chr1_1:20731017-20731036 | Msa0013410:intron | 40.0% | |
| ! | CAGAAAGAAGGCACATACAA+GGG | - | chr1_1:20731029-20731048 | Msa0013410:CDS | 40.0% |
| TCAAACCAGCAGCTAGTATA+TGG | + | chr1_1:20731249-20731268 | None:intergenic | 40.0% | |
| !! | ATACTAGCTGCTGGTTTGAA+TGG | - | chr1_1:20731250-20731269 | Msa0013410:CDS | 40.0% |
| TCAAGTTAGTTACAGTTGCC+AGG | + | chr1_1:20731279-20731298 | None:intergenic | 40.0% | |
| CCACATTTCCACTTGTTTAC+AGG | + | chr1_1:20731307-20731326 | None:intergenic | 40.0% | |
| CCTGTAAACAAGTGGAAATG+TGG | - | chr1_1:20731304-20731323 | Msa0013410:intron | 40.0% | |
| GGCTCAAAGCATAAACACAT+AGG | + | chr1_1:20731614-20731633 | None:intergenic | 40.0% | |
| ! | TTTATGCTTTGAGCCCTGTT+TGG | - | chr1_1:20731619-20731638 | Msa0013410:intron | 40.0% |
| ! | AAGCTATCTTGGAGCACTTA+TGG | - | chr1_1:20731735-20731754 | Msa0013410:intron | 40.0% |
| !! | CATGTGCACAAGTTGTTTTC+AGG | + | chr1_1:20731767-20731786 | None:intergenic | 40.0% |
| GAGACTGTTTGAGAGAACAT+AGG | + | chr1_1:20731804-20731823 | None:intergenic | 40.0% | |
| ACAAACAATGGCATATGCAC+TGG | + | chr1_1:20731828-20731847 | None:intergenic | 40.0% | |
| AGCGAGGAAAAAAGCAAGTA+TGG | + | chr1_1:20731920-20731939 | None:intergenic | 40.0% | |
| TGTTGAAGACCAAGACTACA+TGG | - | chr1_1:20732141-20732160 | Msa0013410:intron | 40.0% | |
| GTTGAAGACCAAGACTACAT+GGG | - | chr1_1:20732142-20732161 | Msa0013410:intron | 40.0% | |
| ACTTCAGGAATACCTTGAAC+AGG | - | chr1_1:20732177-20732196 | Msa0013410:intron | 40.0% | |
| GAAAATCTCTCGTTGTTGCT+AGG | - | chr1_1:20732629-20732648 | Msa0013410:CDS | 40.0% | |
| TACGAACCATTGTAAAGCCA+GGG | - | chr1_1:20732652-20732671 | Msa0013410:CDS | 40.0% | |
| ! | TAGCCTTGGGAAGTAGTTAT+TGG | - | chr1_1:20732852-20732871 | Msa0013410:intron | 40.0% |
| CAACCAATAACTACTTCCCA+AGG | + | chr1_1:20732858-20732877 | None:intergenic | 40.0% | |
| ATAGCTTGAGTTATCAAGGC+CGG | - | chr1_1:20733077-20733096 | Msa0013410:intron | 40.0% | |
| ! | AAGGGTAATCAAGGCCTTTT+TGG | + | chr1_1:20733243-20733262 | None:intergenic | 40.0% |
| AAAAAGGCCTTGATTACCCT+TGG | - | chr1_1:20733242-20733261 | Msa0013410:five_prime_UTR | 40.0% | |
| CTTCAAGTCTCCTAATCTGT+TGG | - | chr1_1:20733356-20733375 | Msa0013410:five_prime_UTR | 40.0% | |
| TCAGAATCCATGGTGGTTGT+TGG | + | chr1_1:20727314-20727333 | None:intergenic | 45.0% | |
| AACTCACTTGAAGGCAAGGA+GGG | + | chr1_1:20727400-20727419 | None:intergenic | 45.0% | |
| AAACTCACTTGAAGGCAAGG+AGG | + | chr1_1:20727401-20727420 | None:intergenic | 45.0% | |
| ATGTGCAGGGAACAACTGTT+AGG | - | chr1_1:20727775-20727794 | Msa0013410:CDS | 45.0% | |
| TGTGCAGGGAACAACTGTTA+GGG | - | chr1_1:20727776-20727795 | Msa0013410:CDS | 45.0% | |
| CTTATAGTAGGCTCATCAGC+TGG | + | chr1_1:20727834-20727853 | None:intergenic | 45.0% | |
| ATGAGCCAAAGGTTGTCCAT+AGG | + | chr1_1:20727874-20727893 | None:intergenic | 45.0% | |
| GCCCTAAGAAAATGAGCCAA+AGG | + | chr1_1:20727885-20727904 | None:intergenic | 45.0% | |
| TAACTGAGCACCCTCCTATT+AGG | - | chr1_1:20727934-20727953 | Msa0013410:intron | 45.0% | |
| CTCACAAGTTTCATTGTCGC+AGG | - | chr1_1:20728043-20728062 | Msa0013410:intron | 45.0% | |
| AAGTTTCATTGTCGCAGGGT+TGG | - | chr1_1:20728048-20728067 | Msa0013410:intron | 45.0% | |
| GATTCCTAACATGCACGAAC+CGG | - | chr1_1:20728460-20728479 | Msa0013410:CDS | 45.0% | |
| ! | CGGAGAATTTTGCTAACCCA+TGG | - | chr1_1:20728480-20728499 | Msa0013410:CDS | 45.0% |
| !! | GTGGTTATGATTTGCTTGGG+CGG | - | chr1_1:20728792-20728811 | Msa0013410:intron | 45.0% |
| GGCGGACGAAAGATCAAATT+AGG | - | chr1_1:20728810-20728829 | Msa0013410:intron | 45.0% | |
| !! | CTTGATGGCCTTGTCATCAT+TGG | - | chr1_1:20728881-20728900 | Msa0013410:intron | 45.0% |
| GTTGCCATAGATGAAGATCC+AGG | + | chr1_1:20728920-20728939 | None:intergenic | 45.0% | |
| ! | CAAGGCATCACATGTTGCAT+TGG | - | chr1_1:20729636-20729655 | Msa0013410:intron | 45.0% |
| TCTTCAGTCCCATCCAAACA+TGG | - | chr1_1:20729666-20729685 | Msa0013410:CDS | 45.0% | |
| TCAGGTAATTCTTGGTGAGG+AGG | - | chr1_1:20729773-20729792 | Msa0013410:intron | 45.0% | |
| GTTCAGGCTAGATCAGAACA+AGG | - | chr1_1:20729849-20729868 | Msa0013410:CDS | 45.0% | |
| !! | CAATCAGACCCTCTGGAATA+AGG | + | chr1_1:20730000-20730019 | None:intergenic | 45.0% |
| ATTGTTCTGTAATCGGGTGG+GGG | + | chr1_1:20730080-20730099 | None:intergenic | 45.0% | |
| CCTATTGTTCTGTAATCGGG+TGG | + | chr1_1:20730083-20730102 | None:intergenic | 45.0% | |
| CCACCCGATTACAGAACAAT+AGG | - | chr1_1:20730080-20730099 | Msa0013410:intron | 45.0% | |
| TAGCTAGTCAGCTTTCACCA+TGG | - | chr1_1:20730663-20730682 | Msa0013410:intron | 45.0% | |
| AGCTAGTCAGCTTTCACCAT+GGG | - | chr1_1:20730664-20730683 | Msa0013410:CDS | 45.0% | |
| ACCACCATTTATCAGGAGAC+AGG | - | chr1_1:20730709-20730728 | Msa0013410:CDS | 45.0% | |
| ACCTGTCTCCTGATAAATGG+TGG | + | chr1_1:20730713-20730732 | None:intergenic | 45.0% | |
| TGTGCTGAGTCATCTGATTC+AGG | + | chr1_1:20730850-20730869 | None:intergenic | 45.0% | |
| TGACTCAGCACAATTGTCTC+AGG | - | chr1_1:20730858-20730877 | Msa0013410:CDS | 45.0% | |
| !! | CTGCAAGGCATTGCATAGAA+AGG | + | chr1_1:20730955-20730974 | None:intergenic | 45.0% |
| CCTTGTATGTGCCTTCTTTC+TGG | + | chr1_1:20731031-20731050 | None:intergenic | 45.0% | |
| ! | CCAGAAAGAAGGCACATACA+AGG | - | chr1_1:20731028-20731047 | Msa0013410:CDS | 45.0% |
| TGCTACCATATACTAGCTGC+TGG | - | chr1_1:20731241-20731260 | Msa0013410:CDS | 45.0% | |
| !! | TGCTGGTTTGAATGGATACC+TGG | - | chr1_1:20731258-20731277 | Msa0013410:CDS | 45.0% |
| ATTGATGTGGCTCCAGGATT+AGG | + | chr1_1:20731514-20731533 | None:intergenic | 45.0% | |
| AATCCTGGAGCCACATCAAT+CGG | - | chr1_1:20731514-20731533 | Msa0013410:CDS | 45.0% | |
| TCAAATCCACAGTAGCTGGA+TGG | + | chr1_1:20731552-20731571 | None:intergenic | 45.0% | |
| AAGTGTGCATGTTATCAGCG+AGG | + | chr1_1:20731936-20731955 | None:intergenic | 45.0% | |
| GTACGAACCATTGTAAAGCC+AGG | - | chr1_1:20732651-20732670 | Msa0013410:CDS | 45.0% | |
| !! | AAAGCAGCTTTGAGCGTCAT+GGG | - | chr1_1:20732693-20732712 | Msa0013410:CDS | 45.0% |
| TGACATGGCGGTTAGAACTT+CGG | + | chr1_1:20732727-20732746 | None:intergenic | 45.0% | |
| !! | TCAGAGTGATGAAGTGTTGC+CGG | + | chr1_1:20732757-20732776 | None:intergenic | 45.0% |
| ATGGCCTAAAACCCTTGCTT+GGG | + | chr1_1:20733119-20733138 | None:intergenic | 45.0% | |
| TATGGCCTAAAACCCTTGCT+TGG | + | chr1_1:20733120-20733139 | None:intergenic | 45.0% | |
| TAATCTGTTGGACCGAACGT+GGG | - | chr1_1:20733368-20733387 | Msa0013410:five_prime_UTR | 45.0% | |
| !! | AGAATAAAAAAAAAATTAAT+TGG | - | chr1_1:20727126-20727145 | Msa0013410:intron | 5.0% |
| !! | GAATAAAAAAAAAATTAATT+GGG | - | chr1_1:20727127-20727146 | Msa0013410:intron | 5.0% |
| !!! | TAGTTTTTTTTAAAAAATAA+CGG | + | chr1_1:20728341-20728360 | None:intergenic | 5.0% |
| !!! | TTATTTTTTAAAAAAAACTA+TGG | - | chr1_1:20728341-20728360 | Msa0013410:CDS | 5.0% |
| TCTGGAAGACAATCTCCTGG+TGG | - | chr1_1:20728081-20728100 | Msa0013410:intron | 50.0% | |
| !!! | ACTATGGTTTTGACTGGCGG+TGG | - | chr1_1:20728357-20728376 | Msa0013410:CDS | 50.0% |
| !!! | CTATGGTTTTGACTGGCGGT+GGG | - | chr1_1:20728358-20728377 | Msa0013410:CDS | 50.0% |
| ! | TTCTCCGGTTCGTGCATGTT+AGG | + | chr1_1:20728467-20728486 | None:intergenic | 50.0% |
| CTTCTGACCCACCTGAAGAA+AGG | + | chr1_1:20728608-20728627 | None:intergenic | 50.0% | |
| CTTTCTTCAGGTGGGTCAGA+AGG | - | chr1_1:20728606-20728625 | Msa0013410:intron | 50.0% | |
| !! | GATGGCCTTGTCATCATTGG+AGG | - | chr1_1:20728884-20728903 | Msa0013410:intron | 50.0% |
| ! | TATGCAGGTGGTTGGTGTTC+CGG | - | chr1_1:20729218-20729237 | Msa0013410:CDS | 50.0% |
| GGTGTTCCGGTGACTTTGAA+TGG | - | chr1_1:20729231-20729250 | Msa0013410:CDS | 50.0% | |
| GCAGACATTGCTGATGAGCT+GGG | + | chr1_1:20729473-20729492 | None:intergenic | 50.0% | |
| TGCAGACATTGCTGATGAGC+TGG | + | chr1_1:20729474-20729493 | None:intergenic | 50.0% | |
| TGATGCTCTCTCTGCAGAGA+AGG | - | chr1_1:20729495-20729514 | Msa0013410:CDS | 50.0% | |
| CATTCGTCTTATGGGACGCA+AGG | - | chr1_1:20729618-20729637 | Msa0013410:intron | 50.0% | |
| ATGCTCTCAATCAGACCCTC+TGG | + | chr1_1:20730007-20730026 | None:intergenic | 50.0% | |
| !! | CTATGATGACGGTGAAGCGT+TGG | - | chr1_1:20731485-20731504 | Msa0013410:CDS | 50.0% |
| !! | AAGCGTTGGTCTCCTAATCC+TGG | - | chr1_1:20731499-20731518 | Msa0013410:CDS | 50.0% |
| TTTCCGATTGATGTGGCTCC+AGG | + | chr1_1:20731520-20731539 | None:intergenic | 50.0% | |
| ! | GGCAGGTTTTCCGATTGATG+TGG | + | chr1_1:20731527-20731546 | None:intergenic | 50.0% |
| ATCCACAGTAGCTGGATGGA+TGG | + | chr1_1:20731548-20731567 | None:intergenic | 50.0% | |
| CCTCTCAAATCCACAGTAGC+TGG | + | chr1_1:20731556-20731575 | None:intergenic | 50.0% | |
| CCAGCTACTGTGGATTTGAG+AGG | - | chr1_1:20731553-20731572 | Msa0013410:intron | 50.0% | |
| CAGGACCATCAAACTGAAGC+GGG | + | chr1_1:20732093-20732112 | None:intergenic | 50.0% | |
| CCAGGACCATCAAACTGAAG+CGG | + | chr1_1:20732094-20732113 | None:intergenic | 50.0% | |
| TGATGCGACCCATGTAGTCT+TGG | + | chr1_1:20732153-20732172 | None:intergenic | 50.0% | |
| GGGTCGCATCAAGAAACTTC+AGG | - | chr1_1:20732162-20732181 | Msa0013410:intron | 50.0% | |
| !! | AGGACACCCTGGCTTTACAA+TGG | + | chr1_1:20732661-20732680 | None:intergenic | 50.0% |
| ! | GCTGCTTTCAGAACCTCTTG+AGG | + | chr1_1:20732681-20732700 | None:intergenic | 50.0% |
| !! | GAAAGCAGCTTTGAGCGTCA+TGG | - | chr1_1:20732692-20732711 | Msa0013410:CDS | 50.0% |
| !! | AAGCAGCTTTGAGCGTCATG+GGG | - | chr1_1:20732694-20732713 | Msa0013410:CDS | 50.0% |
| ACCGCCATGTCATCTTCTTC+CGG | - | chr1_1:20732735-20732754 | Msa0013410:intron | 50.0% | |
| GTTGCCGGAAGAAGATGACA+TGG | + | chr1_1:20732742-20732761 | None:intergenic | 50.0% | |
| TAGGCACTTGCATGTCGACA+TGG | - | chr1_1:20732892-20732911 | Msa0013410:intron | 50.0% | |
| AGTTATCAAGGCCGGCCTAA+GGG | - | chr1_1:20733085-20733104 | Msa0013410:intron | 50.0% | |
| ! | AAACCCTTGCTTGGGTTGCT+TGG | + | chr1_1:20733111-20733130 | None:intergenic | 50.0% |
| ! | GCAACCCAAGCAAGGGTTTT+AGG | - | chr1_1:20733112-20733131 | Msa0013410:intron | 50.0% |
| CACGTTCGGTCCAACAGATT+AGG | + | chr1_1:20733369-20733388 | None:intergenic | 50.0% | |
| CTAATCTGTTGGACCGAACG+TGG | - | chr1_1:20733367-20733386 | Msa0013410:five_prime_UTR | 50.0% | |
| TCTCTCGCCAACAACCACCA+TGG | - | chr1_1:20727304-20727323 | Msa0013410:intron | 55.0% | |
| TGAAGGCAAGGAGGGAGTTC+AGG | + | chr1_1:20727392-20727411 | None:intergenic | 55.0% | |
| ACAGTAGCTGGATGGATGGC+AGG | + | chr1_1:20731544-20731563 | None:intergenic | 55.0% | |
| TGCCATCCATCCAGCTACTG+TGG | - | chr1_1:20731543-20731562 | Msa0013410:intron | 55.0% | |
| ! | CCGCTTCAGTTTGATGGTCC+TGG | - | chr1_1:20732091-20732110 | Msa0013410:intron | 55.0% |
| ATAGGCTTGGCATCTGCACC+AGG | + | chr1_1:20732112-20732131 | None:intergenic | 55.0% | |
| ! | AAAGCCAGGGTGTCCTCAAG+AGG | - | chr1_1:20732665-20732684 | Msa0013410:CDS | 55.0% |
| AGAACCTCTTGAGGACACCC+TGG | + | chr1_1:20732672-20732691 | None:intergenic | 55.0% | |
| GCCGGAAGAAGATGACATGG+CGG | + | chr1_1:20732739-20732758 | None:intergenic | 55.0% | |
| GAGTTATCAAGGCCGGCCTA+AGG | - | chr1_1:20733084-20733103 | Msa0013410:intron | 55.0% | |
| GGCAAGGAGGGAGTTCAGGT+TGG | + | chr1_1:20727388-20727407 | None:intergenic | 60.0% | |
| CCATCAAACTGAAGCGGGCC+TGG | + | chr1_1:20732088-20732107 | None:intergenic | 60.0% | |
| CCAGGCCCGCTTCAGTTTGA+TGG | - | chr1_1:20732085-20732104 | Msa0013410:intron | 60.0% | |
| ! | GCTTGGGTTGCTTGGCCCTT+AGG | + | chr1_1:20733103-20733122 | None:intergenic | 60.0% |
| AGGGCCAAGCAACCCAAGCA+AGG | - | chr1_1:20733104-20733123 | Msa0013410:intron | 60.0% | |
| GGGCCAAGCAACCCAAGCAA+GGG | - | chr1_1:20733105-20733124 | Msa0013410:intron | 60.0% | |
| GGGTTGCTTGGCCCTTAGGC+CGG | + | chr1_1:20733099-20733118 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 20727104 | 20733430 | 20727104 | ID=Msa0013410;Name=Msa0013410 |
| chr1_1 | mRNA | 20727104 | 20733430 | 20727104 | ID=Msa0013410-mRNA-1;Parent=Msa0013410;Name=Msa0013410-mRNA-1;_AED=0.09;_eAED=0.09;_QI=219|0.94|0.89|1|0.94|0.89|19|348|623 |
| chr1_1 | exon | 20727104 | 20727141 | 20727104 | ID=Msa0013410-mRNA-1:exon:7417;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20727448 | 20727883 | 20727448 | ID=Msa0013410-mRNA-1:exon:7416;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20728336 | 20728548 | 20728336 | ID=Msa0013410-mRNA-1:exon:7415;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20728973 | 20729050 | 20728973 | ID=Msa0013410-mRNA-1:exon:7414;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20729192 | 20729308 | 20729192 | ID=Msa0013410-mRNA-1:exon:7413;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20729398 | 20729559 | 20729398 | ID=Msa0013410-mRNA-1:exon:7412;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20729655 | 20729699 | 20729655 | ID=Msa0013410-mRNA-1:exon:7411;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20729804 | 20729914 | 20729804 | ID=Msa0013410-mRNA-1:exon:7410;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20730483 | 20730556 | 20730483 | ID=Msa0013410-mRNA-1:exon:7409;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20730664 | 20730757 | 20730664 | ID=Msa0013410-mRNA-1:exon:7408;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20730847 | 20730927 | 20730847 | ID=Msa0013410-mRNA-1:exon:7407;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20731018 | 20731071 | 20731018 | ID=Msa0013410-mRNA-1:exon:7406;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20731226 | 20731309 | 20731226 | ID=Msa0013410-mRNA-1:exon:7405;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20731476 | 20731543 | 20731476 | ID=Msa0013410-mRNA-1:exon:7404;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20731629 | 20731742 | 20731629 | ID=Msa0013410-mRNA-1:exon:7403;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20731844 | 20731918 | 20731844 | ID=Msa0013410-mRNA-1:exon:7402;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20732357 | 20732469 | 20732357 | ID=Msa0013410-mRNA-1:exon:7401;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20732579 | 20732751 | 20732579 | ID=Msa0013410-mRNA-1:exon:7400;Parent=Msa0013410-mRNA-1 |
| chr1_1 | exon | 20733122 | 20733430 | 20733122 | ID=Msa0013410-mRNA-1:exon:7399;Parent=Msa0013410-mRNA-1 |
| chr1_1 | five_prime_UTR | 20733212 | 20733430 | 20733212 | ID=Msa0013410-mRNA-1:five_prime_utr;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20733122 | 20733211 | 20733122 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20732579 | 20732751 | 20732579 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20732357 | 20732469 | 20732357 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20731844 | 20731918 | 20731844 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20731629 | 20731742 | 20731629 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20731476 | 20731543 | 20731476 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20731226 | 20731309 | 20731226 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20731018 | 20731071 | 20731018 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20730847 | 20730927 | 20730847 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20730664 | 20730757 | 20730664 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20730483 | 20730556 | 20730483 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20729804 | 20729914 | 20729804 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20729655 | 20729699 | 20729655 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20729398 | 20729559 | 20729398 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20729192 | 20729308 | 20729192 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20728973 | 20729050 | 20728973 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20728336 | 20728548 | 20728336 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | CDS | 20727758 | 20727883 | 20727758 | ID=Msa0013410-mRNA-1:cds;Parent=Msa0013410-mRNA-1 |
| chr1_1 | three_prime_UTR | 20727448 | 20727757 | 20727448 | ID=Msa0013410-mRNA-1:three_prime_utr;Parent=Msa0013410-mRNA-1 |
| chr1_1 | three_prime_UTR | 20727104 | 20727141 | 20727104 | ID=Msa0013410-mRNA-1:three_prime_utr;Parent=Msa0013410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
