AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008850 MtrunA17_Chr7g0219091 86.334 461 18 2 73 488 1 461 0.0 689
Msa1008850 MtrunA17_Chr4g0061541 47.967 369 141 10 58 382 3 364 1.12e-88 276
Msa1008850 MtrunA17_Chr7g0235151 39.009 464 222 14 60 477 1 449 1.84e-79 256
Msa1008850 MtrunA17_Chr1g0168741 30.172 464 237 15 55 458 7 443 2.46e-42 156
Msa1008850 MtrunA17_Chr4g0043211 63.964 111 40 0 68 178 9 119 4.80e-39 147
Msa1008850 MtrunA17_Chr7g0262051 32.895 228 128 7 253 472 242 452 1.70e-18 87.8
Msa1008850 MtrunA17_Chr7g0262051 40.000 110 62 3 70 178 9 115 1.15e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008850 AT5G60980.2 44.310 413 174 9 58 429 1 398 7.43e-84 266
Msa1008850 AT5G60980.3 44.310 413 174 9 58 429 1 398 7.43e-84 266
Msa1008850 AT5G60980.4 44.068 413 174 10 58 429 1 397 2.46e-81 260
Msa1008850 AT5G60980.1 44.068 413 174 10 58 429 1 397 2.46e-81 260
Msa1008850 AT3G25150.1 37.500 432 194 9 58 440 1 405 6.97e-72 236
Msa1008850 AT3G25150.2 36.927 436 200 9 52 440 97 504 1.50e-71 238
Msa1008850 AT5G48650.1 34.253 435 222 12 62 440 4 430 1.46e-54 189
Msa1008850 AT2G03640.2 32.536 418 242 9 58 448 1 405 1.73e-54 188
Msa1008850 AT2G03640.5 32.536 418 241 10 58 448 1 404 7.50e-54 187
Msa1008850 AT2G03640.1 32.536 418 241 10 58 448 1 404 7.50e-54 187
Msa1008850 AT2G03640.3 32.536 418 241 10 58 448 1 404 7.50e-54 187
Msa1008850 AT1G13730.2 34.328 402 215 9 58 429 1 383 2.58e-52 183
Msa1008850 AT1G13730.1 34.328 402 215 9 58 429 1 383 2.58e-52 183
Msa1008850 AT2G03640.4 31.626 449 235 13 58 448 1 435 4.20e-50 177
Msa1008850 AT1G69250.1 31.088 386 204 12 69 410 8 375 9.50e-41 152
Msa1008850 AT1G69250.2 31.818 330 171 9 67 360 6 317 1.44e-34 134
Msa1008850 AT5G43960.1 31.218 394 202 14 69 399 6 393 2.38e-31 126
Msa1008850 AT5G43960.2 30.769 338 166 13 125 399 2 334 8.98e-21 94.7
Msa1008850 AT3G07250.1 36.441 118 72 2 69 186 5 119 1.27e-13 73.9
Msa1008850 AT3G07250.1 41.772 79 46 0 321 399 271 349 5.08e-11 65.5

Find 138 sgRNAs with CRISPR-Local

Find 518 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCAAATTTCGAATGTAAA+TGG 0.177373 7_1:-9551402 None:intergenic
GAAGCAGAGTTTCAGAAATT+TGG 0.209981 7_1:+9551449 Msa1008850:CDS
CAGGCTTCACCTATTGCTAT+TGG 0.217866 7_1:+9552977 Msa1008850:intron
TAAAGTCCCAAAAGGAAATT+TGG 0.227636 7_1:+9550842 Msa1008850:CDS
AGGCTTCACCTATTGCTATT+GGG 0.229861 7_1:+9552978 Msa1008850:intron
AATAAGAAAACTTACTTTCA+TGG 0.246801 7_1:-9550042 None:intergenic
AATGCATTACCAACCATTTC+GGG 0.257065 7_1:-9549903 None:intergenic
TGGAAATTTCGGTGGTGGTC+GGG 0.263013 7_1:+9553784 Msa1008850:CDS
AAACATTCTCAGCAACAATT+TGG 0.265731 7_1:-9550587 None:intergenic
TTTCAGTTGGCGGTGGCACC+GGG 0.277271 7_1:+9553696 Msa1008850:intron
ACAGTTTCCGCACGGAAATA+AGG 0.280370 7_1:-9546510 None:intergenic
TTCGGTGGTGGTCGGGGCTA+TGG 0.280647 7_1:+9553791 Msa1008850:CDS
GCCGGTACCAAATTTCCTTT+TGG 0.283644 7_1:-9550849 None:intergenic
TTCAATGAATAATGCAATTC+AGG 0.292406 7_1:+9551654 Msa1008850:CDS
ATCGATGCATACGACTTCTT+TGG 0.299869 7_1:-9550741 None:intergenic
TTCTCATTTGACTGAAAATC+AGG 0.302484 7_1:-9550669 None:intergenic
AAATGCATTACCAACCATTT+CGG 0.303516 7_1:-9549904 None:intergenic
GTTTCAGTTGGCGGTGGCAC+CGG 0.312481 7_1:+9553695 Msa1008850:intron
TTCAGAGGTCGTGGAAATTT+CGG 0.316573 7_1:+9553773 Msa1008850:CDS
CATCCAAGTCAGAAATAATA+AGG 0.326652 7_1:+9551490 Msa1008850:CDS
CAGCAGCAGGGATACTGTTT+CGG 0.338179 7_1:+9551607 Msa1008850:intron
CAGTTTCCGCACGGAAATAA+GGG 0.341516 7_1:-9546509 None:intergenic
CTAGGACCACGACCTCTAAT+AGG 0.360777 7_1:-9553848 None:intergenic
CGTGCGGAAACTGTTCCCTT+TGG 0.362713 7_1:+9546519 Msa1008850:CDS
CCGGAGAATGGTGAAGAATA+TGG 0.373779 7_1:-9549941 None:intergenic
TATTCATTGAATTTACTGAT+AGG 0.379005 7_1:-9551642 None:intergenic
CTTGTGACCGGATGCTTGAC+TGG 0.391034 7_1:+9550250 Msa1008850:CDS
CGAGGTGAGTTTCCTATTAG+AGG 0.393112 7_1:+9553836 Msa1008850:CDS
CGCCACCTCTTCCTCTCCCT+TGG 0.398041 7_1:-9553892 None:intergenic
GTCATCACACCATTGGAATC+AGG 0.399741 7_1:-9550008 None:intergenic
TGGAAGACCTAGGTTTCCTT+CGG 0.401704 7_1:+9553724 Msa1008850:CDS
TGAGCAACCGTAACATTTAA+CGG 0.403267 7_1:-9551422 None:intergenic
TCGGGGTTGCCAACATTATC+CGG 0.409067 7_1:-9550996 None:intergenic
AACATGTCTGTATTTGATAC+TGG 0.410684 7_1:+9554173 Msa1008850:three_prime_UTR
ACATGAGAATTTGCGGGGTC+CGG 0.417253 7_1:-9550555 None:intergenic
TCGGTGGTGGTCGGGGCTAT+GGG 0.418000 7_1:+9553792 Msa1008850:CDS
GGAAATTTCGGTGGTGGTCG+GGG 0.421717 7_1:+9553785 Msa1008850:CDS
TTCTTTCACATGAGAATTTG+CGG 0.423611 7_1:-9550562 None:intergenic
GTGGAAATTTCGGTGGTGGT+CGG 0.431299 7_1:+9553783 Msa1008850:CDS
TGCTAAAACCACTGAGATCA+TGG 0.436711 7_1:-9554102 None:intergenic
ATTTCGGGACTGGGAGTAGT+TGG 0.444535 7_1:-9549888 None:intergenic
ACATTATCCGGTGCTGCATC+AGG 0.444678 7_1:-9550984 None:intergenic
GGCTTCACCTATTGCTATTG+GGG 0.444733 7_1:+9552979 Msa1008850:intron
AAATTTGCCGTTAAATGTTA+CGG 0.446479 7_1:+9551415 Msa1008850:CDS
TCTTTCACATGAGAATTTGC+GGG 0.454955 7_1:-9550561 None:intergenic
GGAAGACCTAGGTTTCCTTC+GGG 0.459157 7_1:+9553725 Msa1008850:CDS
AACTACTCCCAGTCCCGAAA+TGG 0.459367 7_1:+9549890 Msa1008850:CDS
TTACCTTATTATTTCTGACT+TGG 0.460817 7_1:-9551493 None:intergenic
AATCACTTCTCTGTCTCAAA+AGG 0.464912 7_1:+9550713 Msa1008850:CDS
AAATGAGAATGATGATTCTC+AGG 0.471569 7_1:+9550683 Msa1008850:CDS
TGCGTTTCATGATGGTTAGA+AGG 0.471847 7_1:-9550615 None:intergenic
CCATATTCTTCACCATTCTC+CGG 0.472553 7_1:+9549941 Msa1008850:CDS
TTTCTGACTTGGATGCATCC+TGG 0.473445 7_1:-9551482 None:intergenic
TGCAGTGCCTGATGCAGCAC+CGG 0.476092 7_1:+9550977 Msa1008850:CDS
TATCACCAAGGGAGAGGAAG+AGG 0.479109 7_1:+9553887 Msa1008850:CDS
ATTACCAACCATTTCGGGAC+TGG 0.482428 7_1:-9549898 None:intergenic
TTACCAACCATTTCGGGACT+GGG 0.487486 7_1:-9549897 None:intergenic
GCCTGCTTTACAGTATTAGT+TGG 0.489014 7_1:-9550909 None:intergenic
TTGCAGGTTAAAGTCCCAAA+AGG 0.489323 7_1:+9550834 Msa1008850:intron
ATCCTTTCCAGTCAAGCATC+CGG 0.494347 7_1:-9550257 None:intergenic
AACATATGAGAAGTCTTTGA+AGG 0.495292 7_1:-9554033 None:intergenic
CAACTATCTGCGTTTCATGA+TGG 0.496176 7_1:-9550623 None:intergenic
GTTGGCACATACACTTTAGC+CGG 0.498098 7_1:-9550867 None:intergenic
TTTAAAATTACCTCGGGCAG+TGG 0.500033 7_1:-9553032 None:intergenic
GAAGGATCAGCAATGTGAAT+CGG 0.501939 7_1:-9550528 None:intergenic
GGAGAGGAAGAGGTGGCGGC+CGG 0.502292 7_1:+9553897 Msa1008850:CDS
AAATGTTACGGTTGCTCAGT+TGG 0.504697 7_1:+9551427 Msa1008850:CDS
TTTGCGGGGTCCGGTGGAGA+AGG 0.506954 7_1:-9550546 None:intergenic
TTTCGAAATGATTCATTCAG+AGG 0.521602 7_1:+9553758 Msa1008850:CDS
ATGTTGGTGAATTTGATTGA+AGG 0.523047 7_1:-9546593 None:intergenic
GGTCCTAGTGGACGTGGAGA+AGG 0.529839 7_1:+9553863 Msa1008850:CDS
AAATTTGGACCGATCAAGCC+AGG 0.530806 7_1:+9551464 Msa1008850:CDS
TGGATGCATCCTGGCTTGAT+CGG 0.535677 7_1:-9551473 None:intergenic
AGGTTTCCTTCGGGAAGAAG+TGG 0.536808 7_1:+9553734 Msa1008850:CDS
TCAGTTGGCGGTGGCACCGG+GGG 0.537253 7_1:+9553698 Msa1008850:intron
AACTGATGTCATCACACCAT+TGG 0.537745 7_1:-9550015 None:intergenic
GGCTTATCACACTAGACTCC+TGG 0.538042 7_1:-9549983 None:intergenic
GCCAACTAATACTGTAAAGC+AGG 0.538243 7_1:+9550908 Msa1008850:CDS
AATGATTCATTCAGAGGTCG+TGG 0.539211 7_1:+9553764 Msa1008850:CDS
CGAAATCCACTTCTTCCCGA+AGG 0.539572 7_1:-9553740 None:intergenic
TGACTGAAAATCAGGTTCTA+CGG 0.540434 7_1:-9550661 None:intergenic
TTCAGTTGGCGGTGGCACCG+GGG 0.541103 7_1:+9553697 Msa1008850:intron
CAAGGGAGAGGAAGAGGTGG+CGG 0.542822 7_1:+9553893 Msa1008850:CDS
GAAGGTTATCACCAAGGGAG+AGG 0.543577 7_1:+9553881 Msa1008850:CDS
CATTGCTGATCCTTCTCCAC+CGG 0.544130 7_1:+9550536 Msa1008850:CDS
GAAACTCACCTCGGTTTCCA+TGG 0.544875 7_1:-9553826 None:intergenic
TTTGTTTGAATACACTAGAC+CGG 0.547856 7_1:-9553916 None:intergenic
GAGTTTCCTATTAGAGGTCG+TGG 0.548261 7_1:+9553842 Msa1008850:CDS
CTTCTTCCCGAAGGAAACCT+AGG 0.549762 7_1:-9553731 None:intergenic
TCGGGACTGGGAGTAGTTGG+AGG 0.551746 7_1:-9549885 None:intergenic
GGAGTGACTGTGCTTGTGAC+CGG 0.552760 7_1:+9550238 Msa1008850:CDS
GGTCGTGGAAATTTCGGTGG+TGG 0.554086 7_1:+9553779 Msa1008850:CDS
TAACCTTCTCCACGTCCACT+AGG 0.554942 7_1:-9553866 None:intergenic
AGTGTGAAGAAGAGACCAAA+GGG 0.556284 7_1:-9546534 None:intergenic
CCCAAAAGGAAATTTGGTAC+CGG 0.558103 7_1:+9550848 Msa1008850:CDS
AACCGTTGTCTTGTGGAGCA+AGG 0.562293 7_1:-9550312 None:intergenic
TGAGAATTTGCGGGGTCCGG+TGG 0.567129 7_1:-9550552 None:intergenic
TTTGCTGTTTCAGTTGGCGG+TGG 0.568996 7_1:+9553689 Msa1008850:intron
GATAGACTAACTCCGGAGAA+TGG 0.576363 7_1:-9549953 None:intergenic
AGGAGTCTAGTGTGATAAGC+CGG 0.577677 7_1:+9549985 Msa1008850:CDS
CAGAACTATCATTACTTTCG+GGG 0.579630 7_1:-9551013 None:intergenic
ATTCTCCGGAGTTAGTCTAT+CGG 0.584311 7_1:+9549955 Msa1008850:CDS
TGTTGGTGAATTTGATTGAA+GGG 0.586750 7_1:-9546592 None:intergenic
TAAGGGGAAGTGTGTGCGAA+AGG 0.587715 7_1:-9546492 None:intergenic
CCAACATCAACACATTCCTC+TGG 0.588059 7_1:+9546609 Msa1008850:CDS
GGTCGTGGTCCTAGTGGACG+TGG 0.588716 7_1:+9553857 Msa1008850:CDS
GTTATTTGCCATGATCTCAG+TGG 0.601128 7_1:+9554094 Msa1008850:three_prime_UTR
GCTTCACCTATTGCTATTGG+GGG 0.602708 7_1:+9552980 Msa1008850:CDS
TTCCTTGCTCCACAAGACAA+CGG 0.602718 7_1:+9550310 Msa1008850:CDS
GATGCAGCACCGGATAATGT+TGG 0.603557 7_1:+9550987 Msa1008850:CDS
ATTAGAGGTCGTGGTCCTAG+TGG 0.604114 7_1:+9553851 Msa1008850:CDS
AAGTGTGAAGAAGAGACCAA+AGG 0.609008 7_1:-9546535 None:intergenic
CCTAGGTCTTCCAATACCCC+CGG 0.610120 7_1:-9553714 None:intergenic
GTGGAGAAGGTTATCACCAA+GGG 0.612859 7_1:+9553876 Msa1008850:CDS
TTGGTGAATTTGATTGAAGG+GGG 0.613718 7_1:-9546590 None:intergenic
CTTTCACATGAGAATTTGCG+GGG 0.614726 7_1:-9550560 None:intergenic
ACATATGAGAAGTCTTTGAA+GGG 0.620044 7_1:-9554032 None:intergenic
TAAAACCGATAGACTAACTC+CGG 0.620507 7_1:-9549960 None:intergenic
TCACACCATTGGAATCAGGC+CGG 0.622077 7_1:-9550004 None:intergenic
GTTGGTGAATTTGATTGAAG+GGG 0.630520 7_1:-9546591 None:intergenic
CCAGAGGAATGTGTTGATGT+TGG 0.635867 7_1:-9546609 None:intergenic
AGAGGTCGTGGAAATTTCGG+TGG 0.637954 7_1:+9553776 Msa1008850:CDS
ACTGGGAGTAGTTGGAGGAG+CGG 0.638601 7_1:-9549880 None:intergenic
AGTTTCCGCACGGAAATAAG+GGG 0.639396 7_1:-9546508 None:intergenic
TGTCTGTCTTTGCAGCAGCA+GGG 0.641292 7_1:+9551595 Msa1008850:intron
CTTCACCTATTGCTATTGGG+GGG 0.642869 7_1:+9552981 Msa1008850:CDS
CACCAAGGGAGAGGAAGAGG+TGG 0.647559 7_1:+9553890 Msa1008850:CDS
ATAAAGAGAACCACTGCCCG+AGG 0.654446 7_1:+9553022 Msa1008850:CDS
ACTCCCAGTCCCGAAATGGT+TGG 0.655892 7_1:+9549894 Msa1008850:CDS
CGTGGAGAAGGTTATCACCA+AGG 0.656146 7_1:+9553875 Msa1008850:CDS
ATAAGCCGGCCTGATTCCAA+TGG 0.659947 7_1:+9549999 Msa1008850:CDS
AACAATGACCATGGAAACCG+AGG 0.662335 7_1:+9553818 Msa1008850:CDS
TATGAGAAGTCTTTGAAGGG+TGG 0.662376 7_1:-9554029 None:intergenic
CACTTCCCCTTATTTCCGTG+CGG 0.665089 7_1:+9546503 Msa1008850:CDS
CTCTAATAGGAAACTCACCT+CGG 0.674552 7_1:-9553835 None:intergenic
GACCGGATGCTTGACTGGAA+AGG 0.678649 7_1:+9550255 Msa1008850:CDS
CAAAGGGAACAGTTTCCGCA+CGG 0.678878 7_1:-9546518 None:intergenic
TATGGGCGAAACAATGACCA+TGG 0.679339 7_1:+9553809 Msa1008850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATGAAAATTAATGAAT+TGG - chr7_1:9546735-9546754 None:intergenic 10.0%
!!! AATTCATTAATTTTCATAAA+TGG + chr7_1:9546734-9546753 Msa1008850:intron 10.0%
!!! ATTCATTAATTTTCATAAAT+GGG + chr7_1:9546735-9546754 Msa1008850:intron 10.0%
!! ATTATCAATAATTAATTACA+TGG - chr7_1:9548234-9548253 None:intergenic 10.0%
!!! TAATTAATTATTGATAATCA+GGG + chr7_1:9548236-9548255 Msa1008850:intron 10.0%
!! ATTCATATAAGATAAAATTA+GGG + chr7_1:9548583-9548602 Msa1008850:intron 10.0%
!!! GAAATTTTTTTTTTTTAGAA+CGG + chr7_1:9553104-9553123 Msa1008850:intron 10.0%
!!! AAATTCTTAATTTTCTTTTT+TGG + chr7_1:9553173-9553192 Msa1008850:intron 10.0%
!!! AAAATAACCTTTTATATAAT+CGG + chr7_1:9553614-9553633 Msa1008850:intron 10.0%
!! TTAAACAATTAACGTAAAAT+GGG - chr7_1:9546766-9546785 None:intergenic 15.0%
!! TTTAAACAATTAACGTAAAA+TGG - chr7_1:9546767-9546786 None:intergenic 15.0%
!! ACGTTAATTGTTTAAAAAAT+TGG + chr7_1:9546771-9546790 Msa1008850:intron 15.0%
!!! GTTTAAAAAATTGGTTTTTT+CGG + chr7_1:9546780-9546799 Msa1008850:intron 15.0%
!!! TTGATTTGTATAATATAAGT+CGG + chr7_1:9546978-9546997 Msa1008850:intron 15.0%
!!! TTTTATTATTTTTGGAATCT+AGG + chr7_1:9547023-9547042 Msa1008850:intron 15.0%
!!! TTTATTATTTTTGGAATCTA+GGG + chr7_1:9547024-9547043 Msa1008850:intron 15.0%
!! ATCTAACACAAAAAATAAAA+GGG - chr7_1:9547220-9547239 None:intergenic 15.0%
!! TATCTAACACAAAAAATAAA+AGG - chr7_1:9547221-9547240 None:intergenic 15.0%
!! TTTATGTTTAATGAACAAAT+AGG + chr7_1:9548011-9548030 Msa1008850:intron 15.0%
!! TTATGTTTAATGAACAAATA+GGG + chr7_1:9548012-9548031 Msa1008850:intron 15.0%
!!! GTAATTAATTATTGATAATC+AGG + chr7_1:9548235-9548254 Msa1008850:intron 15.0%
!!! AATTAATTATTGATAATCAG+GGG + chr7_1:9548237-9548256 Msa1008850:intron 15.0%
!! GATTCATATAAGATAAAATT+AGG + chr7_1:9548582-9548601 Msa1008850:intron 15.0%
!!! ATCAATTTATGTTTTTTTAC+AGG + chr7_1:9548773-9548792 Msa1008850:intron 15.0%
!! ATTATCAATATGTAATTTCA+TGG - chr7_1:9549119-9549138 None:intergenic 15.0%
!!! AAATTACATATTGATAATCA+GGG + chr7_1:9549121-9549140 Msa1008850:intron 15.0%
!! AGCTTATAAATAATACATAA+AGG - chr7_1:9549612-9549631 None:intergenic 15.0%
!!! TTTTTTATCTAGAAAAGTTT+AGG + chr7_1:9551076-9551095 Msa1008850:intron 15.0%
!!! TATGTTATTGCAAAATATTT+TGG - chr7_1:9551348-9551367 None:intergenic 15.0%
!! TGATTAACTACTAAAATTAT+AGG - chr7_1:9551710-9551729 None:intergenic 15.0%
!!! ATGATATTTTCTAAAGTATA+AGG + chr7_1:9551867-9551886 Msa1008850:intron 15.0%
!! AACAAAATATAAAGATATTC+AGG - chr7_1:9551917-9551936 None:intergenic 15.0%
!!! AAATAACATAATTTTGGTTT+TGG + chr7_1:9552076-9552095 Msa1008850:intron 15.0%
!!! GTCTTTTGTAAATAATTTTT+TGG - chr7_1:9552622-9552641 None:intergenic 15.0%
!! AATAAAATTGTTAACTTTCA+TGG - chr7_1:9553671-9553690 None:intergenic 15.0%
!!! ATATACTCTTTTTTTTAAGA+TGG + chr7_1:9554142-9554161 Msa1008850:three_prime_UTR 15.0%
!! AATTAATGAATTGGTCAAAA+GGG - chr7_1:9546726-9546745 None:intergenic 20.0%
!! AAATTAATGAATTGGTCAAA+AGG - chr7_1:9546727-9546746 None:intergenic 20.0%
!! TAATGTAATGTAATGTAATG+AGG + chr7_1:9547047-9547066 Msa1008850:intron 20.0%
!!! TTGTATATTTGTTGAAATGT+TGG + chr7_1:9547108-9547127 Msa1008850:intron 20.0%
!!! ATCAAGTTATGTTTTTTTAC+AGG + chr7_1:9547343-9547362 Msa1008850:intron 20.0%
!! ATGTTAATGGTTCAAAAAAT+TGG + chr7_1:9547458-9547477 Msa1008850:intron 20.0%
!! TTAGTAATTATCAGACATTA+TGG + chr7_1:9547490-9547509 Msa1008850:intron 20.0%
!!! TATGATTCTTTTGTTTTTGT+TGG + chr7_1:9547763-9547782 Msa1008850:intron 20.0%
!!! TTTTGTTTTTGTTGGAATTT+GGG + chr7_1:9547771-9547790 Msa1008850:intron 20.0%
!! TTCATATGATAAACGAAATT+TGG + chr7_1:9547800-9547819 Msa1008850:intron 20.0%
!!! TTTTTTTGAGTTAGATAACT+TGG + chr7_1:9547886-9547905 Msa1008850:intron 20.0%
!!! AATTTTTCATACGAATTCAA+TGG - chr7_1:9548081-9548100 None:intergenic 20.0%
!! ATTGAATTCGTATGAAAAAT+TGG + chr7_1:9548080-9548099 Msa1008850:intron 20.0%
!!! TTTTCATTGAGTATTTTGTT+TGG + chr7_1:9548416-9548435 Msa1008850:intron 20.0%
!! ACAATTCAAAATATAATGAG+AGG - chr7_1:9548728-9548747 None:intergenic 20.0%
!! AAATTTGCATACAAATTCAA+TGG - chr7_1:9548882-9548901 None:intergenic 20.0%
!! ATTGAATTTGTATGCAAATT+TGG + chr7_1:9548881-9548900 Msa1008850:intron 20.0%
!! ATAAATAAAAGACGTTAGTT+GGG - chr7_1:9549078-9549097 None:intergenic 20.0%
!! TTATTTATGTTAATTTCCTC+AGG + chr7_1:9549090-9549109 Msa1008850:intron 20.0%
!!! GAAATTACATATTGATAATC+AGG + chr7_1:9549120-9549139 Msa1008850:intron 20.0%
!!! AATTACATATTGATAATCAG+GGG + chr7_1:9549122-9549141 Msa1008850:intron 20.0%
!! TTGCAAATATTTATTATGCT+AGG + chr7_1:9549272-9549291 Msa1008850:intron 20.0%
!! ATATTAAAGACAACAAATAG+AGG - chr7_1:9549389-9549408 None:intergenic 20.0%
!! TTTGGTTAATGAAACATAAT+CGG - chr7_1:9549497-9549516 None:intergenic 20.0%
!! AATAAGAAAACTTACTTTCA+TGG - chr7_1:9550045-9550064 None:intergenic 20.0%
!! TTACATATTACTAACAAACA+TGG + chr7_1:9551168-9551187 Msa1008850:intron 20.0%
!! TATTCATTGAATTTACTGAT+AGG - chr7_1:9551645-9551664 None:intergenic 20.0%
!! ACTAAAATTATAGGAATCTA+AGG - chr7_1:9551701-9551720 None:intergenic 20.0%
!! AAAGAAAAAGAAACTTGTAT+TGG + chr7_1:9551954-9551973 Msa1008850:intron 20.0%
!! ATTATTCTTTAGACAATTGT+TGG + chr7_1:9552169-9552188 Msa1008850:intron 20.0%
!!! TAGTGTATTTTATCCTTTTT+TGG + chr7_1:9552271-9552290 Msa1008850:intron 20.0%
!! AGTTCTATTGTATATGTTAA+GGG - chr7_1:9552340-9552359 None:intergenic 20.0%
!! TTTGTAGTTTGATAGATTAA+GGG - chr7_1:9552505-9552524 None:intergenic 20.0%
!!! TTTTGTAGTTTGATAGATTA+AGG - chr7_1:9552506-9552525 None:intergenic 20.0%
!!! TAGTTAGTTTAAAATTACCT+CGG - chr7_1:9553042-9553061 None:intergenic 20.0%
!!! TAATTTTCTTTTTTGGACAA+AGG + chr7_1:9553180-9553199 Msa1008850:intron 20.0%
!!! AATTTTCTTTTTTGGACAAA+GGG + chr7_1:9553181-9553200 Msa1008850:intron 20.0%
!! AAACTATAAGAGAAACTATT+AGG + chr7_1:9553460-9553479 Msa1008850:intron 20.0%
!!! TTTGTTACCGATTATATAAA+AGG - chr7_1:9553624-9553643 None:intergenic 20.0%
!! AAAACTTTCGAAAAATCATT+CGG - chr7_1:9553954-9553973 None:intergenic 20.0%
! TTAGTAATGATCAGACATTA+TGG + chr7_1:9546803-9546822 Msa1008850:intron 25.0%
!! TGTATAATATAAGTCGGTTT+AGG + chr7_1:9546984-9547003 Msa1008850:intron 25.0%
!! ATTTGTTGAAATGTTGGTAT+TGG + chr7_1:9547114-9547133 Msa1008850:intron 25.0%
! TTGAACCATTAACATAAAAC+CGG - chr7_1:9547453-9547472 None:intergenic 25.0%
!!! TTGAGATTTTTGTTTTCCTT+TGG + chr7_1:9547693-9547712 Msa1008850:intron 25.0%
!!! TGAGATTTTTGTTTTCCTTT+GGG + chr7_1:9547694-9547713 Msa1008850:intron 25.0%
!!! CTTTTGTTTTTGTTGGAATT+TGG + chr7_1:9547770-9547789 Msa1008850:intron 25.0%
!!! GAACTTTTTAGAGAAACTTA+GGG - chr7_1:9547921-9547940 None:intergenic 25.0%
! TGCTTGAGCATAATAAATAT+AGG + chr7_1:9548265-9548284 Msa1008850:intron 25.0%
!!! GTTTGATTTGTAACATAGAT+CGG + chr7_1:9548463-9548482 Msa1008850:intron 25.0%
! TAATAGTCCATCAATATGAT+GGG + chr7_1:9548828-9548847 Msa1008850:intron 25.0%
! CATAAATAAAAGACGTTAGT+TGG - chr7_1:9549079-9549098 None:intergenic 25.0%
! TAAGAAAGTAAGAGAAAGAA+GGG - chr7_1:9549315-9549334 None:intergenic 25.0%
! TTGTCTTTAATATCTTGACA+TGG + chr7_1:9549396-9549415 Msa1008850:intron 25.0%
! AAAATAAGCTAATCCAAACA+GGG - chr7_1:9549568-9549587 None:intergenic 25.0%
! TAAAATAAGCTAATCCAAAC+AGG - chr7_1:9549569-9549588 None:intergenic 25.0%
! TATGAAAAAACAGTTTACGA+AGG + chr7_1:9549645-9549664 Msa1008850:intron 25.0%
!! TTAAAAAGATTTAGAGCCAA+CGG - chr7_1:9550073-9550092 None:intergenic 25.0%
!! GATTCTTTCGCTAAATTTTA+AGG + chr7_1:9550165-9550184 Msa1008850:CDS 25.0%
!! TATTTTGTAATAAACTTGCC+TGG - chr7_1:9550442-9550461 None:intergenic 25.0%
!! TTTTGTAACTGAAATTGTTC+AGG + chr7_1:9550470-9550489 Msa1008850:intron 25.0%
!!! AGTTTTATTTATGCCGATAA+CGG + chr7_1:9550493-9550512 Msa1008850:intron 25.0%
! TCAAAGCTTAAACAAAAACA+GGG - chr7_1:9550800-9550819 None:intergenic 25.0%
! TTCAAAGCTTAAACAAAAAC+AGG - chr7_1:9550801-9550820 None:intergenic 25.0%
!!! ACATTCTTTACAGTTTTAGT+TGG - chr7_1:9550888-9550907 None:intergenic 25.0%
! CTAGAAAAGTTTAGGTAAAT+TGG + chr7_1:9551084-9551103 Msa1008850:intron 25.0%
! AAATTTGCCGTTAAATGTTA+CGG + chr7_1:9551415-9551434 Msa1008850:CDS 25.0%
!!! TTACCTTATTATTTCTGACT+TGG - chr7_1:9551496-9551515 None:intergenic 25.0%
! GATTGAAGAAACAACATAAA+GGG - chr7_1:9551547-9551566 None:intergenic 25.0%
! ATTTCCAGAAAAACTTCATT+AGG - chr7_1:9551569-9551588 None:intergenic 25.0%
! TTCAATGAATAATGCAATTC+AGG + chr7_1:9551654-9551673 Msa1008850:CDS 25.0%
!!! GCAAGTCACATATATTTTTA+TGG + chr7_1:9551731-9551750 Msa1008850:intron 25.0%
!!! AGTCACATATATTTTTATGG+TGG + chr7_1:9551734-9551753 Msa1008850:intron 25.0%
! TAAAGTATAAGGATCATATG+TGG + chr7_1:9551878-9551897 Msa1008850:intron 25.0%
!! AACAATGATGCTATTTAACA+TGG + chr7_1:9551986-9552005 Msa1008850:intron 25.0%
!!! TAACATAATTTTGGTTTTGG+TGG + chr7_1:9552079-9552098 Msa1008850:intron 25.0%
! AATAATACTACTTTCTACGA+AGG - chr7_1:9552155-9552174 None:intergenic 25.0%
!! AGTTGAAAGGATTTTATAGA+TGG - chr7_1:9552219-9552238 None:intergenic 25.0%
! ATCTATAAAATCCTTTCAAC+TGG + chr7_1:9552218-9552237 Msa1008850:intron 25.0%
! TCTATAAAATCCTTTCAACT+GGG + chr7_1:9552219-9552238 Msa1008850:intron 25.0%
!!! AGGGAAAAATCATTTTTATC+AGG - chr7_1:9552321-9552340 None:intergenic 25.0%
! GAGTTCTATTGTATATGTTA+AGG - chr7_1:9552341-9552360 None:intergenic 25.0%
!! AAACGAGTAAACAATTGTTT+TGG + chr7_1:9552447-9552466 Msa1008850:intron 25.0%
! ATACAATTATCTTGTTAGTC+AGG + chr7_1:9552649-9552668 Msa1008850:intron 25.0%
! TATTAGTGACAGACATTAAA+AGG + chr7_1:9552677-9552696 Msa1008850:intron 25.0%
! ATTAGTGACAGACATTAAAA+GGG + chr7_1:9552678-9552697 Msa1008850:intron 25.0%
! ATGAATATAAGAAACCATGT+TGG - chr7_1:9552705-9552724 None:intergenic 25.0%
! CAATTATCTAACATAACTGT+TGG + chr7_1:9552764-9552783 Msa1008850:intron 25.0%
! TATAAACTAGAACACAGTAA+AGG - chr7_1:9552805-9552824 None:intergenic 25.0%
!!! TTTTCTCATTTTGTTTCTTC+AGG + chr7_1:9552958-9552977 Msa1008850:intron 25.0%
!! AGTTAGTTTAAAATTACCTC+GGG - chr7_1:9553041-9553060 None:intergenic 25.0%
!!! TGTTTTTGAGTAGCTTTTTT+TGG + chr7_1:9553142-9553161 Msa1008850:intron 25.0%
! ATACTAGAAGAGATAAGATT+AGG + chr7_1:9553282-9553301 Msa1008850:intron 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - chr7_1:9553456-9553475 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr7_1:9553517-9553536 Msa1008850:intron 25.0%
!! AAATCAGTTGTTATTGACAA+AGG + chr7_1:9553641-9553660 Msa1008850:intron 25.0%
!!! ATTTTATTTGCTGTTTCAGT+TGG + chr7_1:9553683-9553702 Msa1008850:intron 25.0%
!! TTTTAGCAATGATCAGAAAT+AGG + chr7_1:9554117-9554136 Msa1008850:three_prime_UTR 25.0%
! TGTTGGTGAATTTGATTGAA+GGG - chr7_1:9546595-9546614 None:intergenic 30.0%
! ATGTTGGTGAATTTGATTGA+AGG - chr7_1:9546596-9546615 None:intergenic 30.0%
! ATTCTCAGTTTTCTCTCAAT+TGG + chr7_1:9546648-9546667 Msa1008850:intron 30.0%
! TTCTCAGTTTTCTCTCAATT+GGG + chr7_1:9546649-9546668 Msa1008850:intron 30.0%
TTGATTCAGTTTCTGTGAAA+TGG + chr7_1:9546948-9546967 Msa1008850:intron 30.0%
TGATTCAGTTTCTGTGAAAT+GGG + chr7_1:9546949-9546968 Msa1008850:intron 30.0%
! GAACTTTCTAGAGAAATCTA+GGG - chr7_1:9547260-9547279 None:intergenic 30.0%
GTGTTAGTTAAGACTTAAGA+CGG + chr7_1:9547377-9547396 Msa1008850:intron 30.0%
!! TTTTTCAATGTGCATGTTGA+TGG + chr7_1:9547598-9547617 Msa1008850:intron 30.0%
! TTTTGTTGGAATTTGGGTAT+TGG + chr7_1:9547777-9547796 Msa1008850:intron 30.0%
!! GGAACTTTTTAGAGAAACTT+AGG - chr7_1:9547922-9547941 None:intergenic 30.0%
AAATAGGGCAGTAATAAGAT+GGG + chr7_1:9548027-9548046 Msa1008850:intron 30.0%
! AAAGTAAGTGCTGTCAAATA+GGG - chr7_1:9548201-9548220 None:intergenic 30.0%
! AAAAGTAAGTGCTGTCAAAT+AGG - chr7_1:9548202-9548221 None:intergenic 30.0%
! TTCAGTTTTTGTCAAATCGA+CGG + chr7_1:9548439-9548458 Msa1008850:intron 30.0%
GTATTGTAATGATACTAGTG+TGG + chr7_1:9548492-9548511 Msa1008850:intron 30.0%
! CAACGATCATTTTCATAAAG+AGG - chr7_1:9548617-9548636 None:intergenic 30.0%
GTAATAGTCCATCAATATGA+TGG + chr7_1:9548827-9548846 Msa1008850:intron 30.0%
TTTATGTTAATTTCCTCAGG+TGG + chr7_1:9549093-9549112 Msa1008850:intron 30.0%
GCTTAATGCATAATAAGTGT+AGG + chr7_1:9549151-9549170 Msa1008850:intron 30.0%
ATAGTTGAGGAGAATCAATA+TGG - chr7_1:9549194-9549213 None:intergenic 30.0%
TCAACTATGTATCAGTTGAA+CGG + chr7_1:9549206-9549225 Msa1008850:intron 30.0%
GTAAGAAAGTAAGAGAAAGA+AGG - chr7_1:9549316-9549335 None:intergenic 30.0%
CATGATTATGGTTCATATCT+CGG + chr7_1:9549358-9549377 Msa1008850:intron 30.0%
CTGGAGCACATATATTAATT+TGG - chr7_1:9549515-9549534 None:intergenic 30.0%
ACAAAAGCCTATTCCTATTA+AGG + chr7_1:9549542-9549561 Msa1008850:intron 30.0%
CAAAATAAGCTCAATCCAAA+CGG + chr7_1:9549743-9549762 Msa1008850:intron 30.0%
AAAATAAGCTCAATCCAAAC+GGG + chr7_1:9549744-9549763 Msa1008850:intron 30.0%
! CAAAAACCAAGTCTTTGAAA+AGG + chr7_1:9549787-9549806 Msa1008850:intron 30.0%
TTCTCAAGTTTCAAAACAGA+TGG + chr7_1:9549845-9549864 Msa1008850:intron 30.0%
AAATGCATTACCAACCATTT+CGG - chr7_1:9549907-9549926 None:intergenic 30.0%
! GTTTTCTTATTCAAAACCGT+TGG + chr7_1:9550054-9550073 Msa1008850:intron 30.0%
GAATTCGTCTCTAATTCTAA+GGG + chr7_1:9550103-9550122 Msa1008850:intron 30.0%
AATTCGTCTCTAATTCTAAG+GGG + chr7_1:9550104-9550123 Msa1008850:intron 30.0%
!! TCGTTCTGAATGATGTTTTT+AGG + chr7_1:9550338-9550357 Msa1008850:intron 30.0%
TTCTTTCACATGAGAATTTG+CGG - chr7_1:9550565-9550584 None:intergenic 30.0%
AAACATTCTCAGCAACAATT+TGG - chr7_1:9550590-9550609 None:intergenic 30.0%
TTCTCATTTGACTGAAAATC+AGG - chr7_1:9550672-9550691 None:intergenic 30.0%
AAATGAGAATGATGATTCTC+AGG + chr7_1:9550683-9550702 Msa1008850:CDS 30.0%
TAAAGTCCCAAAAGGAAATT+TGG + chr7_1:9550842-9550861 Msa1008850:CDS 30.0%
TCAGAACTATCATTACTTTC+GGG - chr7_1:9551017-9551036 None:intergenic 30.0%
CTCAGAACTATCATTACTTT+CGG - chr7_1:9551018-9551037 None:intergenic 30.0%
TTTAGGTAAATTGGATTCCT+GGG + chr7_1:9551093-9551112 Msa1008850:intron 30.0%
CATCCAAGTCAGAAATAATA+AGG + chr7_1:9551490-9551509 Msa1008850:CDS 30.0%
GGATTGAAGAAACAACATAA+AGG - chr7_1:9551548-9551567 None:intergenic 30.0%
! CAATCCTAATGAAGTTTTTC+TGG + chr7_1:9551562-9551581 Msa1008850:intron 30.0%
! TTTGAACGCTAATTTCAAGT+TGG + chr7_1:9551770-9551789 Msa1008850:intron 30.0%
! TCTAGAGTAAGAAGAATACA+TGG - chr7_1:9551822-9551841 None:intergenic 30.0%
!!! AGTGCAATTGTTTGTTTTTG+TGG + chr7_1:9552123-9552142 Msa1008850:intron 30.0%
!! CTCGTTTTATTCCAAATAGA+AGG - chr7_1:9552434-9552453 None:intergenic 30.0%
AGATCAAACTGACTAACAAA+AGG - chr7_1:9552544-9552563 None:intergenic 30.0%
TTCATGATGTAATCTTGAGA+TGG + chr7_1:9552720-9552739 Msa1008850:intron 30.0%
AGAACATAGAACATAGCTTA+AGG - chr7_1:9552897-9552916 None:intergenic 30.0%
TGCCTTGAATTATTTGTGTT+TGG + chr7_1:9552916-9552935 Msa1008850:intron 30.0%
GCCTTGAATTATTTGTGTTT+GGG + chr7_1:9552917-9552936 Msa1008850:intron 30.0%
TCCCAAACACAAATAATTCA+AGG - chr7_1:9552921-9552940 None:intergenic 30.0%
ATGAGAAAAAAGACGATGAA+AGG - chr7_1:9552947-9552966 None:intergenic 30.0%
TAACACCATTAGAGAAAGTT+AGG + chr7_1:9553307-9553326 Msa1008850:intron 30.0%
AACACCATTAGAGAAAGTTA+GGG + chr7_1:9553308-9553327 Msa1008850:intron 30.0%
TAGCACCTATAGTAGAAAAT+AGG + chr7_1:9553331-9553350 Msa1008850:intron 30.0%
! CTAAGCCTATTTTCTACTAT+AGG - chr7_1:9553339-9553358 None:intergenic 30.0%
CTATAGTAGAAAATAGGCTT+AGG + chr7_1:9553337-9553356 Msa1008850:intron 30.0%
AACTATTAGGAAAGACTTAG+AGG + chr7_1:9553473-9553492 Msa1008850:intron 30.0%
! TAATGAGTTGGATCGAAATA+TGG + chr7_1:9553497-9553516 Msa1008850:intron 30.0%
TTTCGAAATGATTCATTCAG+AGG + chr7_1:9553758-9553777 Msa1008850:CDS 30.0%
TTTGTTTGAATACACTAGAC+CGG - chr7_1:9553919-9553938 None:intergenic 30.0%
!! GATTTTTCGAAAGTTTTCCA+AGG + chr7_1:9553957-9553976 Msa1008850:exon 30.0%
TGTTTGTATCCTACCAAAAA+AGG - chr7_1:9553983-9554002 None:intergenic 30.0%
ACATATGAGAAGTCTTTGAA+GGG - chr7_1:9554035-9554054 None:intergenic 30.0%
AACATATGAGAAGTCTTTGA+AGG - chr7_1:9554036-9554055 None:intergenic 30.0%
AACATGTCTGTATTTGATAC+TGG + chr7_1:9554173-9554192 Msa1008850:three_prime_UTR 30.0%
TTGGTGAATTTGATTGAAGG+GGG - chr7_1:9546593-9546612 None:intergenic 35.0%
! GTTGGTGAATTTGATTGAAG+GGG - chr7_1:9546594-9546613 None:intergenic 35.0%
! ATGAAAATGTGAAGTACCAG+AGG - chr7_1:9546628-9546647 None:intergenic 35.0%
GTTTAGTGATTGTGAGATAG+TGG + chr7_1:9546841-9546860 Msa1008850:intron 35.0%
! GTAATGTAATGAGGCTAGTT+TGG + chr7_1:9547061-9547080 Msa1008850:intron 35.0%
! GGAACTTTCTAGAGAAATCT+AGG - chr7_1:9547261-9547280 None:intergenic 35.0%
TCTAGAAAGTTCCTTGTATG+AGG + chr7_1:9547268-9547287 Msa1008850:intron 35.0%
CTAGAAAGTTCCTTGTATGA+GGG + chr7_1:9547269-9547288 Msa1008850:intron 35.0%
TTCGAATCTATCTCACGAAT+AGG + chr7_1:9547422-9547441 Msa1008850:intron 35.0%
CCATTAACATAAAACCGGAA+TGG - chr7_1:9547448-9547467 None:intergenic 35.0%
!! CCATTCCGGTTTTATGTTAA+TGG + chr7_1:9547445-9547464 Msa1008850:intron 35.0%
!! GACATTATGGATTGTTTCTG+TGG + chr7_1:9547503-9547522 Msa1008850:intron 35.0%
! TGTTGTTTGATTCGTACCAT+AGG + chr7_1:9547652-9547671 Msa1008850:intron 35.0%
!!! TTTGTTTTCCTTTGGGATCT+AGG + chr7_1:9547701-9547720 Msa1008850:intron 35.0%
!!! TTGTTTTCCTTTGGGATCTA+GGG + chr7_1:9547702-9547721 Msa1008850:intron 35.0%
! TAATGTAATGAGGCTAGTTC+AGG + chr7_1:9547725-9547744 Msa1008850:intron 35.0%
! AATGTAATGAGGCTAGTTCA+GGG + chr7_1:9547726-9547745 Msa1008850:intron 35.0%
CTAGTTCAGGGATACAAATA+GGG + chr7_1:9547738-9547757 Msa1008850:intron 35.0%
TCTAAAAAGTTCCTCTCATG+AGG + chr7_1:9547929-9547948 Msa1008850:intron 35.0%
CTAAAAAGTTCCTCTCATGA+GGG + chr7_1:9547930-9547949 Msa1008850:intron 35.0%
CAAATAGGGCAGTAATAAGA+TGG + chr7_1:9548026-9548045 Msa1008850:intron 35.0%
! AAGTAAGTGCTGTCAAATAG+GGG - chr7_1:9548200-9548219 None:intergenic 35.0%
! CTAAACACTGATTATCAGCA+TGG - chr7_1:9548308-9548327 None:intergenic 35.0%
! TTGTAACATAGATCGGCTTA+AGG + chr7_1:9548470-9548489 Msa1008850:intron 35.0%
GATTGTTGAAGTGTGTGTAT+TGG + chr7_1:9548557-9548576 Msa1008850:intron 35.0%
TTGCAAACCCATCATATTGA+TGG - chr7_1:9548838-9548857 None:intergenic 35.0%
TGTATGTAATGTACCAGCAT+AGG + chr7_1:9548912-9548931 Msa1008850:intron 35.0%
CGGTTACAATATTCAAACAC+AGG - chr7_1:9548970-9548989 None:intergenic 35.0%
TGAATATTGTAACCGATGTG+AGG + chr7_1:9548975-9548994 Msa1008850:intron 35.0%
GTTCAACTGATACATAGTTG+AGG - chr7_1:9549207-9549226 None:intergenic 35.0%
!!! ATAGGCTTTTGTTGTTCTTC+TGG - chr7_1:9549534-9549553 None:intergenic 35.0%
AAATAAGCTCAATCCAAACG+GGG + chr7_1:9549745-9549764 Msa1008850:intron 35.0%
AATGCATTACCAACCATTTC+GGG - chr7_1:9549906-9549925 None:intergenic 35.0%
TAAAACCGATAGACTAACTC+CGG - chr7_1:9549963-9549982 None:intergenic 35.0%
GGAATTCGTCTCTAATTCTA+AGG + chr7_1:9550102-9550121 Msa1008850:intron 35.0%
CACATCCAGTTAATGATGAT+GGG + chr7_1:9550389-9550408 Msa1008850:intron 35.0%
GTTCTGTAAAGAACCGTTAT+CGG - chr7_1:9550509-9550528 None:intergenic 35.0%
TCTTTCACATGAGAATTTGC+GGG - chr7_1:9550564-9550583 None:intergenic 35.0%
TGACTGAAAATCAGGTTCTA+CGG - chr7_1:9550664-9550683 None:intergenic 35.0%
AATCACTTCTCTGTCTCAAA+AGG + chr7_1:9550713-9550732 Msa1008850:CDS 35.0%
!! GAAGCTTATTAGTTTGTTGC+AGG + chr7_1:9550818-9550837 Msa1008850:intron 35.0%
CAGAACTATCATTACTTTCG+GGG - chr7_1:9551016-9551035 None:intergenic 35.0%
! CGAAAGTAATGATAGTTCTG+AGG + chr7_1:9551016-9551035 Msa1008850:intron 35.0%
!! AGTAATGATAGTTCTGAGGA+AGG + chr7_1:9551020-9551039 Msa1008850:intron 35.0%
GTTTAGGTAAATTGGATTCC+TGG + chr7_1:9551092-9551111 Msa1008850:intron 35.0%
!!! CTTCTGTTTTTAACAGTCGA+GGG + chr7_1:9551374-9551393 Msa1008850:intron 35.0%
CGGCAAATTTCGAATGTAAA+TGG - chr7_1:9551405-9551424 None:intergenic 35.0%
TGAGCAACCGTAACATTTAA+CGG - chr7_1:9551425-9551444 None:intergenic 35.0%
TCAGGTATGATCTTCATTAG+TGG + chr7_1:9551672-9551691 Msa1008850:intron 35.0%
ATTTCACGATAGAGAGAAAG+TGG + chr7_1:9552025-9552044 Msa1008850:intron 35.0%
!! GTTTTGGTGGATATCATCAT+GGG + chr7_1:9552092-9552111 Msa1008850:intron 35.0%
!!! ATCCTTTTTTGGCTGAAATG+TGG + chr7_1:9552282-9552301 Msa1008850:intron 35.0%
!!! TCCTTTTTTGGCTGAAATGT+GGG + chr7_1:9552283-9552302 Msa1008850:intron 35.0%
! GCACTTTTACTGAAGAGTAA+TGG - chr7_1:9552375-9552394 None:intergenic 35.0%
!!! TTTTGGTTCTTGAATGCATG+AGG + chr7_1:9552464-9552483 Msa1008850:intron 35.0%
CAAAACAGAAGACACTTTCA+AGG - chr7_1:9552597-9552616 None:intergenic 35.0%
!!! CTTGAAAGTGTCTTCTGTTT+TGG + chr7_1:9552595-9552614 Msa1008850:intron 35.0%
TAGAACATAGCTTAAGGACT+TGG - chr7_1:9552891-9552910 None:intergenic 35.0%
TAGTAGAAAATAGGCTTAGG+TGG + chr7_1:9553340-9553359 Msa1008850:intron 35.0%
AGACTTAGAGGTTAATGAGT+TGG + chr7_1:9553485-9553504 Msa1008850:intron 35.0%
!! TTATTTGCTGTTTCAGTTGG+CGG + chr7_1:9553686-9553705 Msa1008850:intron 35.0%
ACTTTCGAAAAATCATTCGG+TGG - chr7_1:9553951-9553970 None:intergenic 35.0%
! AAGTTTTCCAAGGCCTTTTT+TGG + chr7_1:9553967-9553986 Msa1008850:three_prime_UTR 35.0%
AGTGTGAAGAAGAGACCAAA+GGG - chr7_1:9546537-9546556 None:intergenic 40.0%
AAGTGTGAAGAAGAGACCAA+AGG - chr7_1:9546538-9546557 None:intergenic 40.0%
ATAGTGGTTGAAGTGAAGTG+TGG + chr7_1:9546857-9546876 Msa1008850:intron 40.0%
GTTTAGTGATCGTAAGGTAG+TGG + chr7_1:9547528-9547547 Msa1008850:intron 40.0%
!! TGATGGATTCTGTTTGTGAC+CGG + chr7_1:9547615-9547634 Msa1008850:intron 40.0%
! GTTTGATTCGTACCATAGGT+CGG + chr7_1:9547656-9547675 Msa1008850:intron 40.0%
TACATTACCCTAGATCCCAA+AGG - chr7_1:9547712-9547731 None:intergenic 40.0%
! GGATCTAGGGTAATGTAATG+AGG + chr7_1:9547715-9547734 Msa1008850:intron 40.0%
GCTAGTTCAGGGATACAAAT+AGG + chr7_1:9547737-9547756 Msa1008850:intron 40.0%
!! TGACAGCACTTACTTTTCAC+AGG + chr7_1:9548205-9548224 Msa1008850:intron 40.0%
TGTACCAGCATAGGTTAGTA+TGG + chr7_1:9548921-9548940 Msa1008850:intron 40.0%
GAATCCATACTAACCTATGC+TGG - chr7_1:9548928-9548947 None:intergenic 40.0%
ATTCAAACACAGGTCCTTGT+GGG - chr7_1:9548960-9548979 None:intergenic 40.0%
TATTCAAACACAGGTCCTTG+TGG - chr7_1:9548961-9548980 None:intergenic 40.0%
TAATTACACATTACCCACCG+AGG - chr7_1:9549002-9549021 None:intergenic 40.0%
TGCGCAGAAGGAATTCAAAT+TGG - chr7_1:9549340-9549359 None:intergenic 40.0%
ATTCCTTCTGCGCATGATTA+TGG + chr7_1:9549346-9549365 Msa1008850:intron 40.0%
AACAGGGCCTTAATAGGAAT+AGG - chr7_1:9549552-9549571 None:intergenic 40.0%
ATTCCTATTAAGGCCCTGTT+TGG + chr7_1:9549552-9549571 Msa1008850:intron 40.0%
AATCCAAACAGGGCCTTAAT+AGG - chr7_1:9549558-9549577 None:intergenic 40.0%
TTTGATAGAACGCACCACTT+AGG - chr7_1:9549771-9549790 None:intergenic 40.0%
! TAGGTGCCTTTTCAAAGACT+TGG - chr7_1:9549796-9549815 None:intergenic 40.0%
CGCATAAAACTGTAGCAACT+AGG - chr7_1:9549815-9549834 None:intergenic 40.0%
CCATATTCTTCACCATTCTC+CGG + chr7_1:9549941-9549960 Msa1008850:CDS 40.0%
! ATTCTCCGGAGTTAGTCTAT+CGG + chr7_1:9549955-9549974 Msa1008850:CDS 40.0%
!!! GTTAGTCTATCGGTTTTACC+AGG + chr7_1:9549965-9549984 Msa1008850:CDS 40.0%
AACTGATGTCATCACACCAT+TGG - chr7_1:9550018-9550037 None:intergenic 40.0%
! GGGGATTCACTGTCTTTTTA+TGG + chr7_1:9550123-9550142 Msa1008850:intron 40.0%
! TCACTGTCTTTTTATGGTGC+AGG + chr7_1:9550129-9550148 Msa1008850:intron 40.0%
! CACTGTCTTTTTATGGTGCA+GGG + chr7_1:9550130-9550149 Msa1008850:intron 40.0%
AGATGCTCAAAAATCGCACA+AGG + chr7_1:9550213-9550232 Msa1008850:CDS 40.0%
ACGAAAAAACCGTTGTCTTG+TGG - chr7_1:9550322-9550341 None:intergenic 40.0%
!! TTAACTGGATGTGGTTCTGA+AGG - chr7_1:9550382-9550401 None:intergenic 40.0%
CCATCATCATTAACTGGATG+TGG - chr7_1:9550391-9550410 None:intergenic 40.0%
CCACATCCAGTTAATGATGA+TGG + chr7_1:9550388-9550407 Msa1008850:intron 40.0%
ATAGGCCCATCATCATTAAC+TGG - chr7_1:9550397-9550416 None:intergenic 40.0%
GAGGTTACAGTAACAGCAAT+AGG - chr7_1:9550415-9550434 None:intergenic 40.0%
!! AATAAACTTGCCTGGTTCTG+AGG - chr7_1:9550434-9550453 None:intergenic 40.0%
GAAGGATCAGCAATGTGAAT+CGG - chr7_1:9550531-9550550 None:intergenic 40.0%
CTTTCACATGAGAATTTGCG+GGG - chr7_1:9550563-9550582 None:intergenic 40.0%
TGCGTTTCATGATGGTTAGA+AGG - chr7_1:9550618-9550637 None:intergenic 40.0%
CAACTATCTGCGTTTCATGA+TGG - chr7_1:9550626-9550645 None:intergenic 40.0%
ATCGATGCATACGACTTCTT+TGG - chr7_1:9550744-9550763 None:intergenic 40.0%
GCTTAAACAAAAACAGGGCT+TGG - chr7_1:9550795-9550814 None:intergenic 40.0%
TTGCAGGTTAAAGTCCCAAA+AGG + chr7_1:9550834-9550853 Msa1008850:intron 40.0%
! CCGGTACCAAATTTCCTTTT+GGG - chr7_1:9550851-9550870 None:intergenic 40.0%
CCCAAAAGGAAATTTGGTAC+CGG + chr7_1:9550848-9550867 Msa1008850:CDS 40.0%
GCCAACTAATACTGTAAAGC+AGG + chr7_1:9550908-9550927 Msa1008850:CDS 40.0%
GCCTGCTTTACAGTATTAGT+TGG - chr7_1:9550912-9550931 None:intergenic 40.0%
AACAAACATGGTTCTCACAC+CGG + chr7_1:9551180-9551199 Msa1008850:intron 40.0%
ATTCAAACCTAGGTCCTTGT+GGG + chr7_1:9551210-9551229 Msa1008850:intron 40.0%
GAATTGACTAAGATCCCACA+AGG - chr7_1:9551227-9551246 None:intergenic 40.0%
!!! GCTTCTGTTTTTAACAGTCG+AGG + chr7_1:9551373-9551392 Msa1008850:intron 40.0%
AAATGTTACGGTTGCTCAGT+TGG + chr7_1:9551427-9551446 Msa1008850:CDS 40.0%
!! GGTTTTGGTGGATATCATCA+TGG + chr7_1:9552091-9552110 Msa1008850:intron 40.0%
TTGTTGGACAGTACACATCT+TGG + chr7_1:9552185-9552204 Msa1008850:intron 40.0%
!!! TGCTTTTTGGCTAGTTGTTC+AGG + chr7_1:9552242-9552261 Msa1008850:intron 40.0%
ACCCACATTTCAGCCAAAAA+AGG - chr7_1:9552287-9552306 None:intergenic 40.0%
TAAGTGCTTAGACATGTCGT+TGG - chr7_1:9552397-9552416 None:intergenic 40.0%
GACATGTCTAAGCACTTAGA+AGG + chr7_1:9552399-9552418 Msa1008850:intron 40.0%
TCTAAGCACTTAGAAGGATG+CGG + chr7_1:9552405-9552424 Msa1008850:intron 40.0%
GACTAACAAAAGGCGACTTT+AGG - chr7_1:9552534-9552553 None:intergenic 40.0%
GACATTAAAAGGGACCAACA+TGG + chr7_1:9552688-9552707 Msa1008850:intron 40.0%
CATAGCTTAAGGACTTGGAA+TGG - chr7_1:9552886-9552905 None:intergenic 40.0%
! AGGCTTCACCTATTGCTATT+GGG + chr7_1:9552978-9552997 Msa1008850:intron 40.0%
! TTTAAAATTACCTCGGGCAG+TGG - chr7_1:9553035-9553054 None:intergenic 40.0%
GCTACCCTAACTTTCTCTAA+TGG - chr7_1:9553315-9553334 None:intergenic 40.0%
AATGATTCATTCAGAGGTCG+TGG + chr7_1:9553764-9553783 Msa1008850:CDS 40.0%
TTCAGAGGTCGTGGAAATTT+CGG + chr7_1:9553773-9553792 Msa1008850:CDS 40.0%
CTCTAATAGGAAACTCACCT+CGG - chr7_1:9553838-9553857 None:intergenic 40.0%
! AAAAATCATTCGGTGGCAAC+GGG - chr7_1:9553944-9553963 None:intergenic 40.0%
! GAAAAATCATTCGGTGGCAA+CGG - chr7_1:9553945-9553964 None:intergenic 40.0%
!!! TTTCCAAGGCCTTTTTTGGT+AGG + chr7_1:9553971-9553990 Msa1008850:three_prime_UTR 40.0%
TATCCTACCAAAAAAGGCCT+TGG - chr7_1:9553977-9553996 None:intergenic 40.0%
! TATGAGAAGTCTTTGAAGGG+TGG - chr7_1:9554032-9554051 None:intergenic 40.0%
GTTATTTGCCATGATCTCAG+TGG + chr7_1:9554094-9554113 Msa1008850:three_prime_UTR 40.0%
TGCTAAAACCACTGAGATCA+TGG - chr7_1:9554105-9554124 None:intergenic 40.0%
AGTTTCCGCACGGAAATAAG+GGG - chr7_1:9546511-9546530 None:intergenic 45.0%
CAGTTTCCGCACGGAAATAA+GGG - chr7_1:9546512-9546531 None:intergenic 45.0%
ACAGTTTCCGCACGGAAATA+AGG - chr7_1:9546513-9546532 None:intergenic 45.0%
! CCAGAGGAATGTGTTGATGT+TGG - chr7_1:9546612-9546631 None:intergenic 45.0%
CCAACATCAACACATTCCTC+TGG + chr7_1:9546609-9546628 Msa1008850:CDS 45.0%
AAGTCAGGTCCTCACATTGA+CGG - chr7_1:9547404-9547423 None:intergenic 45.0%
CGTGAGATAGATTCGAAGTC+AGG - chr7_1:9547419-9547438 None:intergenic 45.0%
ATCTCACGAATAGGCCATTC+CGG + chr7_1:9547431-9547450 Msa1008850:intron 45.0%
GTGGCTGTTTAGTGATCGTA+AGG + chr7_1:9547522-9547541 Msa1008850:intron 45.0%
CAACATCCACTTGAGTTCAC+CGG - chr7_1:9547637-9547656 None:intergenic 45.0%
! TTCGTACCATAGGTCGGTTT+AGG + chr7_1:9547662-9547681 Msa1008850:intron 45.0%
! TCGTACCATAGGTCGGTTTA+GGG + chr7_1:9547663-9547682 Msa1008850:intron 45.0%
CTAAACCCTAAACCGACCTA+TGG - chr7_1:9547671-9547690 None:intergenic 45.0%
TGCTGTCAAATAGGGGCTAT+AGG - chr7_1:9548193-9548212 None:intergenic 45.0%
!! CAGCACTTACTTTTCACAGG+AGG + chr7_1:9548208-9548227 Msa1008850:intron 45.0%
GATTCAACTCAGATCCCACA+AGG + chr7_1:9548943-9548962 Msa1008850:intron 45.0%
ATCTGTAATCTCTCGCCCTT+GGG + chr7_1:9549024-9549043 Msa1008850:intron 45.0%
AAAAGACGTTAGTTGGGTCC+CGG - chr7_1:9549072-9549091 None:intergenic 45.0%
TGTAATTTCATGGCCACCTG+AGG - chr7_1:9549109-9549128 None:intergenic 45.0%
GAACCATAATCATGCGCAGA+AGG - chr7_1:9549352-9549371 None:intergenic 45.0%
ATGCTATCTCTTGCTGAGTG+TGG + chr7_1:9549430-9549449 Msa1008850:intron 45.0%
TTACCAACCATTTCGGGACT+GGG - chr7_1:9549900-9549919 None:intergenic 45.0%
ATTACCAACCATTTCGGGAC+TGG - chr7_1:9549901-9549920 None:intergenic 45.0%
CCGGAGAATGGTGAAGAATA+TGG - chr7_1:9549944-9549963 None:intergenic 45.0%
GATAGACTAACTCCGGAGAA+TGG - chr7_1:9549956-9549975 None:intergenic 45.0%
AGGAGTCTAGTGTGATAAGC+CGG + chr7_1:9549985-9550004 Msa1008850:CDS 45.0%
GTCATCACACCATTGGAATC+AGG - chr7_1:9550011-9550030 None:intergenic 45.0%
!! GTGCGATTTTTGAGCATCTG+CGG - chr7_1:9550212-9550231 None:intergenic 45.0%
GCTCAAAAATCGCACAAGGA+AGG + chr7_1:9550217-9550236 Msa1008850:CDS 45.0%
ATCCTTTCCAGTCAAGCATC+CGG - chr7_1:9550260-9550279 None:intergenic 45.0%
TTCCTTGCTCCACAAGACAA+CGG + chr7_1:9550310-9550329 Msa1008850:CDS 45.0%
!! GATGTGGTTCTGAAGGTTCA+GGG - chr7_1:9550375-9550394 None:intergenic 45.0%
GTTACTGTAACCTCAGAACC+AGG + chr7_1:9550421-9550440 Msa1008850:intron 45.0%
! GCCGGTACCAAATTTCCTTT+TGG - chr7_1:9550852-9550871 None:intergenic 45.0%
GTTGGCACATACACTTTAGC+CGG - chr7_1:9550870-9550889 None:intergenic 45.0%
AAGGACCTAGGTTTGAATCC+CGG - chr7_1:9551208-9551227 None:intergenic 45.0%
GATTCAAACCTAGGTCCTTG+TGG + chr7_1:9551209-9551228 Msa1008850:intron 45.0%
!! GTAGGTTGGTTCAGTTGGTA+AGG - chr7_1:9551249-9551268 None:intergenic 45.0%
!! CCAATGTAGGTTGGTTCAGT+TGG - chr7_1:9551254-9551273 None:intergenic 45.0%
CCAACTGAACCAACCTACAT+TGG + chr7_1:9551251-9551270 Msa1008850:intron 45.0%
ACCAACCTACATTGGCACTT+CGG + chr7_1:9551259-9551278 Msa1008850:intron 45.0%
! TTTGACCGAAGTGCCAATGT+AGG - chr7_1:9551267-9551286 None:intergenic 45.0%
AAATTTGGACCGATCAAGCC+AGG + chr7_1:9551464-9551483 Msa1008850:CDS 45.0%
!! TTTCTGACTTGGATGCATCC+TGG - chr7_1:9551485-9551504 None:intergenic 45.0%
! TTGGTGGATATCATCATGGG+TGG + chr7_1:9552095-9552114 Msa1008850:intron 45.0%
!! CCAAAAAGCACCCAGTTGAA+AGG - chr7_1:9552232-9552251 None:intergenic 45.0%
! CCTTTCAACTGGGTGCTTTT+TGG + chr7_1:9552229-9552248 Msa1008850:intron 45.0%
GGATGCGGTATCCTTCTATT+TGG + chr7_1:9552420-9552439 Msa1008850:intron 45.0%
CAGGCTTCACCTATTGCTAT+TGG + chr7_1:9552977-9552996 Msa1008850:intron 45.0%
! GGCTTCACCTATTGCTATTG+GGG + chr7_1:9552979-9552998 Msa1008850:intron 45.0%
! GCTTCACCTATTGCTATTGG+GGG + chr7_1:9552980-9552999 Msa1008850:CDS 45.0%
! CTTCACCTATTGCTATTGGG+GGG + chr7_1:9552981-9553000 Msa1008850:CDS 45.0%
GAGAAGAGCAAGATCAGAAG+AGG + chr7_1:9553420-9553439 Msa1008850:intron 45.0%
AGCAAGATCAGAAGAGGTAG+AGG + chr7_1:9553426-9553445 Msa1008850:intron 45.0%
TGGAAGACCTAGGTTTCCTT+CGG + chr7_1:9553724-9553743 Msa1008850:CDS 45.0%
TATGGGCGAAACAATGACCA+TGG + chr7_1:9553809-9553828 Msa1008850:CDS 45.0%
AACAATGACCATGGAAACCG+AGG + chr7_1:9553818-9553837 Msa1008850:CDS 45.0%
CGAGGTGAGTTTCCTATTAG+AGG + chr7_1:9553836-9553855 Msa1008850:CDS 45.0%
GAGTTTCCTATTAGAGGTCG+TGG + chr7_1:9553842-9553861 Msa1008850:CDS 45.0%
GTGGAGAAGGTTATCACCAA+GGG + chr7_1:9553876-9553895 Msa1008850:CDS 45.0%
!!! TTGAATTTTTTTATTATTTT+TGG + chr7_1:9547015-9547034 Msa1008850:intron 5.0%
!!! TAAATCTTTTTAAAAAATTT+AGG + chr7_1:9550080-9550099 Msa1008850:intron 5.0%
!!! AAATCTTTTTAAAAAATTTA+GGG + chr7_1:9550081-9550100 Msa1008850:intron 5.0%
!!! ATATTAAAATAACATAATTT+TGG + chr7_1:9552070-9552089 Msa1008850:intron 5.0%
! TAAGGGGAAGTGTGTGCGAA+AGG - chr7_1:9546495-9546514 None:intergenic 50.0%
! CACTTCCCCTTATTTCCGTG+CGG + chr7_1:9546503-9546522 Msa1008850:CDS 50.0%
CAAAGGGAACAGTTTCCGCA+CGG - chr7_1:9546521-9546540 None:intergenic 50.0%
CGTGTCATCTCCCTCATACA+AGG - chr7_1:9547282-9547301 None:intergenic 50.0%
TAAGACGGTCCGTCAATGTG+AGG + chr7_1:9547392-9547411 Msa1008850:intron 50.0%
TTGTGACCGGTGAACTCAAG+TGG + chr7_1:9547628-9547647 Msa1008850:intron 50.0%
TATGCTACGCTACACGACCA+TGG + chr7_1:9548163-9548182 Msa1008850:intron 50.0%
TGTAACCGATGTGAGGACCT+CGG + chr7_1:9548982-9549001 Msa1008850:intron 50.0%
CAAGGGCGAGAGATTACAGA+TGG - chr7_1:9549025-9549044 None:intergenic 50.0%
CATCTGTAATCTCTCGCCCT+TGG + chr7_1:9549023-9549042 Msa1008850:intron 50.0%
ATTTCGGGACTGGGAGTAGT+TGG - chr7_1:9549891-9549910 None:intergenic 50.0%
AACTACTCCCAGTCCCGAAA+TGG + chr7_1:9549890-9549909 Msa1008850:CDS 50.0%
GGCTTATCACACTAGACTCC+TGG - chr7_1:9549986-9550005 None:intergenic 50.0%
ATAAGCCGGCCTGATTCCAA+TGG + chr7_1:9549999-9550018 Msa1008850:CDS 50.0%
TCACACCATTGGAATCAGGC+CGG - chr7_1:9550007-9550026 None:intergenic 50.0%
AACCGTTGTCTTGTGGAGCA+AGG - chr7_1:9550315-9550334 None:intergenic 50.0%
!! GGATGTGGTTCTGAAGGTTC+AGG - chr7_1:9550376-9550395 None:intergenic 50.0%
CATTGCTGATCCTTCTCCAC+CGG + chr7_1:9550536-9550555 Msa1008850:CDS 50.0%
ACATGAGAATTTGCGGGGTC+CGG - chr7_1:9550558-9550577 None:intergenic 50.0%
!! ACATTATCCGGTGCTGCATC+AGG - chr7_1:9550987-9551006 None:intergenic 50.0%
! GATGCAGCACCGGATAATGT+TGG + chr7_1:9550987-9551006 Msa1008850:CDS 50.0%
TCGGGGTTGCCAACATTATC+CGG - chr7_1:9550999-9551018 None:intergenic 50.0%
ATTGGATTCCTGGGTTCACC+AGG + chr7_1:9551102-9551121 Msa1008850:intron 50.0%
TTGGATTCCTGGGTTCACCA+GGG + chr7_1:9551103-9551122 Msa1008850:intron 50.0%
TTTAAGCGCTCTCTGAGCCT+TGG - chr7_1:9551141-9551160 None:intergenic 50.0%
CTAAGATCCCACAAGGACCT+AGG - chr7_1:9551220-9551239 None:intergenic 50.0%
! ACCGAAGTGCCAATGTAGGT+TGG - chr7_1:9551263-9551282 None:intergenic 50.0%
! TGGATGCATCCTGGCTTGAT+CGG - chr7_1:9551476-9551495 None:intergenic 50.0%
TGTCTGTCTTTGCAGCAGCA+GGG + chr7_1:9551595-9551614 Msa1008850:intron 50.0%
CAGCAGCAGGGATACTGTTT+CGG + chr7_1:9551607-9551626 Msa1008850:intron 50.0%
GGACAGTACACATCTTGGTG+TGG + chr7_1:9552190-9552209 Msa1008850:intron 50.0%
ATAAAGAGAACCACTGCCCG+AGG + chr7_1:9553022-9553041 Msa1008850:CDS 50.0%
AAGCCTTCTCCCACTAAGTG+GGG - chr7_1:9553566-9553585 None:intergenic 50.0%
CAAGCCTTCTCCCACTAAGT+GGG - chr7_1:9553567-9553586 None:intergenic 50.0%
!! TTTGCTGTTTCAGTTGGCGG+TGG + chr7_1:9553689-9553708 Msa1008850:intron 50.0%
GGAAGACCTAGGTTTCCTTC+GGG + chr7_1:9553725-9553744 Msa1008850:CDS 50.0%
CTTCTTCCCGAAGGAAACCT+AGG - chr7_1:9553734-9553753 None:intergenic 50.0%
AGGTTTCCTTCGGGAAGAAG+TGG + chr7_1:9553734-9553753 Msa1008850:CDS 50.0%
CGAAATCCACTTCTTCCCGA+AGG - chr7_1:9553743-9553762 None:intergenic 50.0%
AGAGGTCGTGGAAATTTCGG+TGG + chr7_1:9553776-9553795 Msa1008850:CDS 50.0%
! GTGGAAATTTCGGTGGTGGT+CGG + chr7_1:9553783-9553802 Msa1008850:CDS 50.0%
! TGGAAATTTCGGTGGTGGTC+GGG + chr7_1:9553784-9553803 Msa1008850:CDS 50.0%
GAAACTCACCTCGGTTTCCA+TGG - chr7_1:9553829-9553848 None:intergenic 50.0%
CTAGGACCACGACCTCTAAT+AGG - chr7_1:9553851-9553870 None:intergenic 50.0%
ATTAGAGGTCGTGGTCCTAG+TGG + chr7_1:9553851-9553870 Msa1008850:CDS 50.0%
TAACCTTCTCCACGTCCACT+AGG - chr7_1:9553869-9553888 None:intergenic 50.0%
CGTGGAGAAGGTTATCACCA+AGG + chr7_1:9553875-9553894 Msa1008850:CDS 50.0%
GAAGGTTATCACCAAGGGAG+AGG + chr7_1:9553881-9553900 Msa1008850:CDS 50.0%
TATCACCAAGGGAGAGGAAG+AGG + chr7_1:9553887-9553906 Msa1008850:CDS 50.0%
CGTGCGGAAACTGTTCCCTT+TGG + chr7_1:9546519-9546538 Msa1008850:CDS 55.0%
!! TAGGGGCTATAGGAGTGCCA+TGG - chr7_1:9548183-9548202 None:intergenic 55.0%
AACGGCAAGGGAAAGCCCAA+GGG - chr7_1:9549042-9549061 None:intergenic 55.0%
AAACGGCAAGGGAAAGCCCA+AGG - chr7_1:9549043-9549062 None:intergenic 55.0%
!!! TCCCTTGCCGTTTTGAGCTC+CGG + chr7_1:9549050-9549069 Msa1008850:intron 55.0%
TTGGGTCCCGGAGCTCAAAA+CGG - chr7_1:9549060-9549079 None:intergenic 55.0%
CAATCCAAACGGGGCCTAAG+TGG + chr7_1:9549754-9549773 Msa1008850:intron 55.0%
ACTGGGAGTAGTTGGAGGAG+CGG - chr7_1:9549883-9549902 None:intergenic 55.0%
ACTCCCAGTCCCGAAATGGT+TGG + chr7_1:9549894-9549913 Msa1008850:CDS 55.0%
GGAGTGACTGTGCTTGTGAC+CGG + chr7_1:9550238-9550257 Msa1008850:CDS 55.0%
CTTGTGACCGGATGCTTGAC+TGG + chr7_1:9550250-9550269 Msa1008850:CDS 55.0%
GACCGGATGCTTGACTGGAA+AGG + chr7_1:9550255-9550274 Msa1008850:CDS 55.0%
! CTGAGCCTTGGCGCTTTTCT+TGG - chr7_1:9551129-9551148 None:intergenic 55.0%
!! GGCTCAGAGAGCGCTTAAAG+AGG + chr7_1:9551142-9551161 Msa1008850:intron 55.0%
CTAGGTTTGAATCCCGGTGC+CGG - chr7_1:9551202-9551221 None:intergenic 55.0%
GTGTCTGTCTTTGCAGCAGC+AGG + chr7_1:9551594-9551613 Msa1008850:intron 55.0%
TGACGCCCCCCAATAGCAAT+AGG - chr7_1:9552989-9553008 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr7_1:9553554-9553573 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr7_1:9553553-9553572 Msa1008850:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr7_1:9553554-9553573 Msa1008850:intron 55.0%
CTTCTCCCACTAAGTGGGGT+CGG - chr7_1:9553562-9553581 None:intergenic 55.0%
CCAAGCCTTCTCCCACTAAG+TGG - chr7_1:9553568-9553587 None:intergenic 55.0%
CCACTTAGTGGGAGAAGGCT+TGG + chr7_1:9553565-9553584 Msa1008850:intron 55.0%
CCTAGGTCTTCCAATACCCC+CGG - chr7_1:9553717-9553736 None:intergenic 55.0%
GGTCGTGGAAATTTCGGTGG+TGG + chr7_1:9553779-9553798 Msa1008850:CDS 55.0%
! GGAAATTTCGGTGGTGGTCG+GGG + chr7_1:9553785-9553804 Msa1008850:CDS 55.0%
GGGGGTTGTTGTGATCGCGT+TGG - chr7_1:9546575-9546594 None:intergenic 60.0%
AACCGATGTGAGGACCTCGG+TGG + chr7_1:9548985-9549004 Msa1008850:intron 60.0%
ACCGATGTGAGGACCTCGGT+GGG + chr7_1:9548986-9549005 Msa1008850:intron 60.0%
ACCCACCGAGGTCCTCACAT+CGG - chr7_1:9548990-9549009 None:intergenic 60.0%
CCCGGAGCTCAAAACGGCAA+GGG - chr7_1:9549054-9549073 None:intergenic 60.0%
!!! CCCTTGCCGTTTTGAGCTCC+GGG + chr7_1:9549051-9549070 Msa1008850:intron 60.0%
TCCCGGAGCTCAAAACGGCA+AGG - chr7_1:9549055-9549074 None:intergenic 60.0%
TCGGGACTGGGAGTAGTTGG+AGG - chr7_1:9549888-9549907 None:intergenic 60.0%
TGAGAATTTGCGGGGTCCGG+TGG - chr7_1:9550555-9550574 None:intergenic 60.0%
TGCAGTGCCTGATGCAGCAC+CGG + chr7_1:9550977-9550996 Msa1008850:CDS 60.0%
TTCTTGGCCCTGGTGAACCC+AGG - chr7_1:9551113-9551132 None:intergenic 60.0%
! CTTGGCGCTTTTCTTGGCCC+TGG - chr7_1:9551123-9551142 None:intergenic 60.0%
!! CAGGGCCAAGAAAAGCGCCA+AGG + chr7_1:9551121-9551140 Msa1008850:intron 60.0%
CATGGTTCTCACACCGGCAC+CGG + chr7_1:9551186-9551205 Msa1008850:intron 60.0%
ATGGTTCTCACACCGGCACC+GGG + chr7_1:9551187-9551206 Msa1008850:intron 60.0%
! CGGCACCGGGATTCAAACCT+AGG + chr7_1:9551200-9551219 Msa1008850:intron 60.0%
CGACCCCACTTAGTGGGAGA+AGG + chr7_1:9553560-9553579 Msa1008850:intron 60.0%
GTTTCAGTTGGCGGTGGCAC+CGG + chr7_1:9553695-9553714 Msa1008850:intron 60.0%
TTTCAGTTGGCGGTGGCACC+GGG + chr7_1:9553696-9553715 Msa1008850:intron 60.0%
!! CCGGGGGTATTGGAAGACCT+AGG + chr7_1:9553714-9553733 Msa1008850:CDS 60.0%
! GGTCCTAGTGGACGTGGAGA+AGG + chr7_1:9553863-9553882 Msa1008850:CDS 60.0%
CACCAAGGGAGAGGAAGAGG+TGG + chr7_1:9553890-9553909 Msa1008850:CDS 60.0%
CAAGGGAGAGGAAGAGGTGG+CGG + chr7_1:9553893-9553912 Msa1008850:CDS 60.0%
CGCACCACTTAGGCCCCGTT+TGG - chr7_1:9549761-9549780 None:intergenic 65.0%
TTTGCGGGGTCCGGTGGAGA+AGG - chr7_1:9550549-9550568 None:intergenic 65.0%
TTCAGTTGGCGGTGGCACCG+GGG + chr7_1:9553697-9553716 Msa1008850:intron 65.0%
! TTCGGTGGTGGTCGGGGCTA+TGG + chr7_1:9553791-9553810 Msa1008850:CDS 65.0%
! TCGGTGGTGGTCGGGGCTAT+GGG + chr7_1:9553792-9553811 Msa1008850:CDS 65.0%
! GGTCGTGGTCCTAGTGGACG+TGG + chr7_1:9553857-9553876 Msa1008850:CDS 65.0%
CGCCACCTCTTCCTCTCCCT+TGG - chr7_1:9553895-9553914 None:intergenic 65.0%
CGCGTCTGCGCCCTCATGAG+AGG - chr7_1:9547943-9547962 None:intergenic 70.0%
! TCAGTTGGCGGTGGCACCGG+GGG + chr7_1:9553698-9553717 Msa1008850:intron 70.0%
! GGAGAGGAAGAGGTGGCGGC+CGG + chr7_1:9553897-9553916 Msa1008850:CDS 70.0%
! GGCGGTGGCACCGGGGGTAT+TGG + chr7_1:9553704-9553723 Msa1008850:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 9546460 9554273 9546460 ID=Msa1008850;Name=Msa1008850
chr7_1 mRNA 9546460 9554273 9546460 ID=Msa1008850-mRNA-1;Parent=Msa1008850;Name=Msa1008850-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.75|0.66|1|0.75|0.77|9|315|488
chr7_1 exon 9546460 9546630 9546460 ID=Msa1008850-mRNA-1:exon:2685;Parent=Msa1008850-mRNA-1
chr7_1 exon 9549864 9550049 9549864 ID=Msa1008850-mRNA-1:exon:2686;Parent=Msa1008850-mRNA-1
chr7_1 exon 9550151 9550331 9550151 ID=Msa1008850-mRNA-1:exon:2687;Parent=Msa1008850-mRNA-1
chr7_1 exon 9550526 9550764 9550526 ID=Msa1008850-mRNA-1:exon:2688;Parent=Msa1008850-mRNA-1
chr7_1 exon 9550840 9551020 9550840 ID=Msa1008850-mRNA-1:exon:2689;Parent=Msa1008850-mRNA-1
chr7_1 exon 9551390 9551511 9551390 ID=Msa1008850-mRNA-1:exon:2690;Parent=Msa1008850-mRNA-1
chr7_1 exon 9551610 9551675 9551610 ID=Msa1008850-mRNA-1:exon:2691;Parent=Msa1008850-mRNA-1
chr7_1 exon 9552980 9553043 9552980 ID=Msa1008850-mRNA-1:exon:2692;Parent=Msa1008850-mRNA-1
chr7_1 exon 9553702 9554273 9553702 ID=Msa1008850-mRNA-1:exon:2693;Parent=Msa1008850-mRNA-1
chr7_1 CDS 9546460 9546630 9546460 ID=Msa1008850-mRNA-1:cds;Parent=Msa1008850-mRNA-1
chr7_1 CDS 9549864 9550049 9549864 ID=Msa1008850-mRNA-1:cds;Parent=Msa1008850-mRNA-1
chr7_1 CDS 9550151 9550331 9550151 ID=Msa1008850-mRNA-1:cds;Parent=Msa1008850-mRNA-1
chr7_1 CDS 9550526 9550764 9550526 ID=Msa1008850-mRNA-1:cds;Parent=Msa1008850-mRNA-1
chr7_1 CDS 9550840 9551020 9550840 ID=Msa1008850-mRNA-1:cds;Parent=Msa1008850-mRNA-1
chr7_1 CDS 9551390 9551511 9551390 ID=Msa1008850-mRNA-1:cds;Parent=Msa1008850-mRNA-1
chr7_1 CDS 9551610 9551675 9551610 ID=Msa1008850-mRNA-1:cds;Parent=Msa1008850-mRNA-1
chr7_1 CDS 9552980 9553043 9552980 ID=Msa1008850-mRNA-1:cds;Parent=Msa1008850-mRNA-1
chr7_1 CDS 9553702 9553958 9553702 ID=Msa1008850-mRNA-1:cds;Parent=Msa1008850-mRNA-1
chr7_1 three_prime_UTR 9553959 9554273 9553959 ID=Msa1008850-mRNA-1:three_prime_utr;Parent=Msa1008850-mRNA-1
Gene Sequence

>Msa1008850

TTCTCTTCACTCACTCATCACAATCACAAGTACCTTTCGCACACACTTCCCCTTATTTCCGTGCGGAAACTGTTCCCTTTGGTCTCTTCTTCACACTTCACTGTTCACTCTTCCAACGCGATCACAACAACCCCCTTCAATCAAATTCACCAACATCAACACATTCCTCTGATGGCGTTGCAAACAGCCGCTCCTCCAACTACTCCCAGTCCCGAAATGGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCTCCGGAGTTAGTCTATCGGTTTTACCAGGAGTCTAGTGTGATAAGCCGGCCTGATTCCAATGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAACGAGAAGATTCTTTCGCTAAATTTTAAGGAATTTAAAGCAGAGATTAAGACCGCAGATGCTCAAAAATCGCACAAGGAAGGAGTGACTGTGCTTGTGACCGGATGCTTGACTGGAAAGGATAACTTGAGAAGAAAATTTGCACAGTCATTCTTCCTTGCTCCACAAGACAACGAACCGATTCACATTGCTGATCCTTCTCCACCGGACCCCGCAAATTCTCATGTGAAAGAACGCCAAATTGTTGCTGAGAATGTTTATGAGCCTTCTAACCATCATGAAACGCAGATAGTTGCTGAAAATGAAGACACCGTAGAACCTGATTTTCAGTCAAATGAGAATGATGATTCTCAGGCAGCTGAAATCACTTCTCTGTCTCAAAAGGATGCTCCAAAGAAGTCGTATGCATCGATTGTTAAAGTCCCAAAAGGAAATTTGGTACCGGCTAAAGTGTATGTGCCAACTAAAACTGTAAAGAATGTGCCAACTAATACTGTAAAGCAGGCGACAAACAGAACTGAAAGCAAAGTAGTTGAGTCAGTAGAATCTGCTGCAGTGCCTGATGCAGCACCGGATAATGTTGGCAACCCCGAAATCGAGGGACACTCCATTTACATTCGAAATTTGCCGTTAAATGTTACGGTTGCTCAGTTGGAAGCAGAGTTTCAGAAATTTGGACCGATCAAGCCAGGATGCATCCAAGTCAGAAATAATAAGCAGCAGGGATACTGTTTCGGCTTTGTTGAATACCTATCAGTAAATTCAATGAATAATGCAATTCAGGCTTCACCTATTGCTATTGGGGGGCGTCAAGCTGTAGTTGAGATAAAGAGAACCACTGCCCGAGTTGGCGGTGGCACCGGGGGTATTGGAAGACCTAGGTTTCCTTCGGGAAGAAGTGGATTTCGAAATGATTCATTCAGAGGTCGTGGAAATTTCGGTGGTGGTCGGGGCTATGGGCGAAACAATGACCATGGAAACCGAGGTGAGTTTCCTATTAGAGGTCGTGGTCCTAGTGGACGTGGAGAAGGTTATCACCAAGGGAGAGGAAGAGGTGGCGGCCGGTCTAGTGTATTCAAACAAAGTCCCGTTGCCACCGAATGA

Protein sequence

>Msa1008850

FSSLTHHNHKYLSHTLPLISVRKLFPLVSSSHFTVHSSNAITTTPFNQIHQHQHIPLMALQTAAPPTTPSPEMVGNAFVEQYYHILHHSPELVYRFYQESSVISRPDSNGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNEPIHIADPSPPDPANSHVKERQIVAENVYEPSNHHETQIVAENEDTVEPDFQSNENDDSQAAEITSLSQKDAPKKSYASIVKVPKGNLVPAKVYVPTKTVKNVPTNTVKQATNRTESKVVESVESAAVPDAAPDNVGNPEIEGHSIYIRNLPLNVTVAQLEAEFQKFGPIKPGCIQVRNNKQQGYCFGFVEYLSVNSMNNAIQASPIAIGGRQAVVEIKRTTARVGGGTGGIGRPRFPSGRSGFRNDSFRGRGNFGGGRGYGRNNDHGNRGEFPIRGRGPSGRGEGYHQGRGRGGGRSSVFKQSPVATE*