AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1105540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105540 MtrunA17_Chr7g0237761 98.423 444 7 0 1 444 1 444 0.0 913
Msa1105540 MtrunA17_Chr1g0169731 76.233 446 99 5 6 444 5 450 0.0 687
Msa1105540 MtrunA17_Chr4g0058051 71.728 382 107 1 64 444 26 407 0.0 581
Msa1105540 MtrunA17_Chr6g0458201 65.803 386 132 0 59 444 19 404 0.0 563
Msa1105540 MtrunA17_Chr3g0116521 70.466 386 114 0 59 444 21 406 0.0 556
Msa1105540 MtrunA17_Chr3g0123321 69.171 386 116 2 59 444 21 403 0.0 531
Msa1105540 MtrunA17_Chr3g0123331 63.377 385 138 3 62 444 23 406 5.23e-177 501
Msa1105540 MtrunA17_Chr1g0210321 62.466 373 137 1 67 436 35 407 8.12e-177 504
Msa1105540 MtrunA17_Chr1g0180381 60.471 382 144 1 66 440 34 415 4.69e-175 498
Msa1105540 MtrunA17_Chr7g0264891 63.564 376 136 1 66 440 35 410 3.14e-174 496
Msa1105540 MtrunA17_Chr4g0060211 55.440 386 163 4 66 444 51 434 3.27e-157 451
Msa1105540 MtrunA17_Chr5g0416061 58.873 355 145 1 91 444 95 449 2.49e-148 429
Msa1105540 MtrunA17_Chr8g0362561 55.801 362 152 2 91 444 94 455 2.99e-145 422
Msa1105540 MtrunA17_Chr2g0288921 56.000 350 150 3 96 444 63 409 7.30e-143 414
Msa1105540 MtrunA17_Chr5g0416041 59.040 354 144 1 92 444 96 449 2.15e-142 414
Msa1105540 MtrunA17_Chr4g0075231 57.429 350 145 3 96 444 39 385 2.34e-142 412
Msa1105540 MtrunA17_Chr6g0452861 56.780 354 152 1 92 444 100 453 1.08e-141 413
Msa1105540 MtrunA17_Chr7g0216581 49.127 458 195 6 9 444 10 451 4.55e-140 409
Msa1105540 MtrunA17_Chr8g0373761 45.070 355 185 7 96 444 42 392 2.84e-100 305
Msa1105540 MtrunA17_Chr8g0373721 44.507 355 187 7 96 444 42 392 3.03e-100 305
Msa1105540 MtrunA17_Chr3g0089181 44.507 355 187 7 96 444 23 373 1.27e-99 302
Msa1105540 MtrunA17_Chr8g0373701 43.662 355 190 7 96 444 97 447 3.87e-96 296
Msa1105540 MtrunA17_Chr8g0373731 45.352 355 184 7 96 444 42 392 4.23e-94 289
Msa1105540 MtrunA17_Chr5g0403481 45.070 355 185 7 96 444 41 391 1.15e-89 277
Msa1105540 MtrunA17_Chr5g0403461 45.070 355 185 7 96 444 41 391 1.15e-89 277
Msa1105540 MtrunA17_Chr5g0403491 45.070 355 185 7 96 444 41 391 1.15e-89 277
Msa1105540 MtrunA17_Chr4g0031851 45.062 324 170 6 121 440 14 333 4.86e-89 275
Msa1105540 MtrunA17_Chr5g0403391 43.662 355 190 7 96 444 41 391 8.04e-88 273
Msa1105540 MtrunA17_Chr5g0414541 42.697 356 192 8 96 444 41 391 8.59e-87 270
Msa1105540 MtrunA17_Chr5g0403411 44.225 355 188 7 96 444 41 391 2.26e-86 269
Msa1105540 MtrunA17_Chr1g0183941 44.981 269 144 3 171 437 1 267 6.24e-75 235
Msa1105540 MtrunA17_Chr3g0113551 71.429 126 36 0 241 366 161 286 4.28e-61 201
Msa1105540 MtrunA17_Chr6g0481851 39.636 275 108 6 129 401 6 224 5.79e-53 178
Msa1105540 MtrunA17_Chr2g0288901 50.641 156 72 3 290 444 5 156 4.91e-46 156
Msa1105540 MtrunA17_Chr2g0288911 58.197 122 50 1 171 291 1 122 2.76e-41 143
Msa1105540 MtrunA17_Chr1g0212931 36.806 288 156 7 113 399 13 275 1.51e-39 144
Msa1105540 MtrunA17_Chr1g0182021 35.540 287 161 4 113 399 62 324 4.54e-37 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105540 AT4G13710.1 75.524 429 95 4 26 444 42 470 0.0 681
Msa1105540 AT4G13710.2 76.485 421 89 4 31 444 34 451 0.0 678
Msa1105540 AT3G24670.1 76.376 436 98 2 11 444 8 440 0.0 668
Msa1105540 AT3G07010.1 81.378 392 73 0 53 444 25 416 0.0 665
Msa1105540 AT1G04680.1 80.977 389 70 1 60 444 41 429 0.0 661
Msa1105540 AT4G13210.2 74.885 434 100 3 12 444 13 438 0.0 642
Msa1105540 AT5G48900.1 81.538 390 72 0 55 444 28 417 0.0 636
Msa1105540 AT3G07010.2 82.880 368 63 0 77 444 16 383 0.0 635
Msa1105540 AT4G13210.1 79.695 394 79 1 52 444 8 401 0.0 631
Msa1105540 AT3G24230.1 65.563 453 138 6 6 444 3 451 0.0 596
Msa1105540 AT1G67750.1 71.916 381 105 1 64 444 30 408 0.0 572
Msa1105540 AT5G63180.1 70.235 383 112 1 64 444 50 432 0.0 571
Msa1105540 AT4G24780.2 71.728 382 107 1 64 444 27 408 0.0 560
Msa1105540 AT4G24780.1 71.728 382 107 1 64 444 27 408 0.0 560
Msa1105540 AT3G27400.2 66.404 381 127 1 64 444 37 416 0.0 531
Msa1105540 AT3G27400.1 66.404 381 127 1 64 444 33 412 0.0 531
Msa1105540 AT3G53190.1 62.963 378 133 1 66 436 37 414 2.32e-172 492
Msa1105540 AT5G04310.3 57.561 410 158 2 42 435 25 434 1.73e-170 487
Msa1105540 AT5G04310.1 57.561 410 158 2 42 435 25 434 7.16e-169 484
Msa1105540 AT5G04310.2 57.561 410 158 2 42 435 25 434 7.16e-169 484
Msa1105540 AT3G54920.1 57.360 394 144 4 62 440 32 416 2.95e-163 470
Msa1105540 AT5G55720.1 55.875 383 157 5 63 444 21 392 2.37e-154 443
Msa1105540 AT1G11920.1 59.714 350 138 3 96 444 37 384 5.01e-154 442
Msa1105540 AT3G01270.1 53.301 409 181 3 46 444 67 475 3.50e-152 441
Msa1105540 AT1G14420.1 55.556 360 154 1 91 444 100 459 5.61e-149 432
Msa1105540 AT5G15110.1 57.465 355 149 2 92 444 118 472 1.24e-148 431
Msa1105540 AT4G22090.1 56.857 350 147 3 96 444 47 393 4.24e-147 425
Msa1105540 AT4G22080.1 56.857 350 147 3 96 444 47 393 1.02e-146 424
Msa1105540 AT2G02720.1 46.204 461 215 6 6 444 6 455 6.38e-142 414
Msa1105540 AT1G30350.1 53.009 349 148 3 96 444 36 368 5.70e-129 377
Msa1105540 AT5G09280.1 48.387 248 125 3 129 375 6 251 3.22e-78 245
Msa1105540 AT3G09540.1 38.408 289 150 7 113 399 61 323 2.85e-42 154
Msa1105540 AT3G55140.1 37.884 293 146 9 113 399 14 276 7.03e-42 151
Msa1105540 AT3G09540.3 38.062 289 147 8 113 399 61 319 9.39e-40 147
Msa1105540 AT3G55140.2 36.719 256 131 7 150 399 22 252 5.25e-35 132
Msa1105540 AT3G09540.2 36.992 246 129 5 113 357 61 281 8.38e-35 131

Find 180 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTGCATACAACCATTT+TGG 0.110425 7_3:+44099560 Msa1105540:CDS
TCTTGTCAACAGTTAGATTT+TGG 0.119998 7_3:+44100597 Msa1105540:three_prime_UTR
CGTAGCTCCCCTTCCCATTT+TGG 0.137331 7_3:+44099161 Msa1105540:CDS
ATGAGAACTGTTGTTGTTAT+TGG 0.149715 7_3:+44100639 Msa1105540:three_prime_UTR
TCTTTGGTTCCAGTCATATT+TGG 0.228663 7_3:+44099219 Msa1105540:CDS
TCATGATCAATTCTTGCTTC+AGG 0.237394 7_3:-44098998 None:intergenic
TGGTCTTGTTGATGCTATTA+TGG 0.249104 7_3:+44099274 Msa1105540:CDS
TTGCATTGTTATAGTAGATT+TGG 0.253485 7_3:+44100519 Msa1105540:three_prime_UTR
CCATTGTCCTCCATCCAAAA+TGG 0.255429 7_3:-44099175 None:intergenic
TAGAAGCCATCTCTCACTTT+TGG 0.262555 7_3:+44100681 Msa1105540:three_prime_UTR
GTTCTTTCCCTTTACTCATT+TGG 0.263710 7_3:-44100392 None:intergenic
GGTGATGGCATTTCCATCTT+TGG 0.269913 7_3:+44099203 Msa1105540:CDS
TATGCTAGAGCCTCAAGTTT+AGG 0.285322 7_3:+44100271 Msa1105540:CDS
AATGATACAGGTTATGCTAT+TGG 0.286003 7_3:+44099496 Msa1105540:intron
AGAAGAAGATGAGAAGAAAA+TGG 0.287874 7_3:-44095103 None:intergenic
TCCCTATTGCCCATTTCATT+TGG 0.293764 7_3:-44100877 None:intergenic
TGGATACAGGGTCCGGAGTA+TGG 0.302482 7_3:+44100164 Msa1105540:CDS
TTCACGGGGTCGTCGTCTCT+TGG 0.302742 7_3:-44098894 None:intergenic
GCTGATTGTGCCATTGGTTT+TGG 0.316248 7_3:+44098822 Msa1105540:CDS
CTAGTTACCTTGGCATCCTT+TGG 0.320663 7_3:-44099595 None:intergenic
TGACGGAGAGTGCCAGGTCT+TGG 0.329790 7_3:-44098918 None:intergenic
TTGATTTGTCCCAAATGAAA+TGG 0.332307 7_3:+44100867 Msa1105540:three_prime_UTR
CCCTATTGCCCATTTCATTT+GGG 0.336426 7_3:-44100876 None:intergenic
TCGGCTTACAATCATGGATA+TGG 0.339277 7_3:-44099121 None:intergenic
ATGCTAGAGCCTCAAGTTTA+GGG 0.340135 7_3:+44100272 Msa1105540:CDS
TTGTAAGAATGTTACCTCTT+TGG 0.340895 7_3:-44100042 None:intergenic
GGATAAGACCCTCCCCAAAA+TGG 0.344066 7_3:-44099574 None:intergenic
GCCAATGTTCATATTGCCTT+TGG 0.350632 7_3:+44099050 Msa1105540:CDS
TCCGACTAATGAAGATGATT+TGG 0.354298 7_3:-44100296 None:intergenic
TGAATCCCTTGGAAAATTAG+AGG 0.369319 7_3:-44100731 None:intergenic
ATTGGCACCACGACCATCTA+TGG 0.380940 7_3:-44099033 None:intergenic
CATGATCAATTCTTGCTTCA+GGG 0.386947 7_3:-44098997 None:intergenic
AATGTTACCTCTTTGGCAAA+AGG 0.387769 7_3:-44100035 None:intergenic
ATGATACAGGTTATGCTATT+GGG 0.392819 7_3:+44099497 Msa1105540:intron
CCCAAATGAAATGGGCAATA+GGG 0.394384 7_3:+44100876 Msa1105540:three_prime_UTR
GACGGAGAGTGCCAGGTCTT+GGG 0.402712 7_3:-44098917 None:intergenic
TCCCAAATGAAATGGGCAAT+AGG 0.414633 7_3:+44100875 Msa1105540:three_prime_UTR
GGTCTTGTTGATGCTATTAT+GGG 0.421679 7_3:+44099275 Msa1105540:CDS
TCACGGGGTCGTCGTCTCTT+GGG 0.425792 7_3:-44098893 None:intergenic
TTGCCTTGGCTGTTAATTGT+GGG 0.427394 7_3:-44099990 None:intergenic
TCCCAGTCGGCTTACAATCA+TGG 0.429765 7_3:-44099127 None:intergenic
ATAGAAAGACAAAGAAACTA+AGG 0.430405 7_3:-44100775 None:intergenic
GAGTATGGAAGGGTTGGAAT+TGG 0.435726 7_3:+44100179 Msa1105540:CDS
TCAACAACCAAATGAGTAAA+GGG 0.435964 7_3:+44100385 Msa1105540:three_prime_UTR
GGAGAGAAAGAAAAGCATAA+AGG 0.436299 7_3:+44100455 Msa1105540:three_prime_UTR
AGTGCCAGGTCTTGGGTTCA+CGG 0.439411 7_3:-44098910 None:intergenic
AACAGTTTCAAGACCATAGA+TGG 0.441561 7_3:+44099020 Msa1105540:CDS
CACTGGGTGATGTATGCTAT+TGG 0.442502 7_3:+44099954 Msa1105540:CDS
GTTGCCTTGGCTGTTAATTG+TGG 0.451055 7_3:-44099991 None:intergenic
TATAACAATGCAATAATAAG+AGG 0.451336 7_3:-44100509 None:intergenic
CTCAATTTACCTCGTTGTGG+TGG 0.451940 7_3:-44099334 None:intergenic
TATGGAAGGGTTGGAATTGG+AGG 0.453341 7_3:+44100182 Msa1105540:CDS
GTGCCAGGTCTTGGGTTCAC+GGG 0.453527 7_3:-44098909 None:intergenic
GTGACAAAGAGGGTGGATAC+AGG 0.460057 7_3:+44100151 Msa1105540:CDS
TGATTTGTCCCAAATGAAAT+GGG 0.461984 7_3:+44100868 Msa1105540:three_prime_UTR
ATGTTACCTCTTTGGCAAAA+GGG 0.462229 7_3:-44100034 None:intergenic
GAAAGAAAAGCATAAAGGAA+TGG 0.470361 7_3:+44100460 Msa1105540:three_prime_UTR
ATCAACAACCAAATGAGTAA+AGG 0.470711 7_3:+44100384 Msa1105540:three_prime_UTR
ACGGCGTGACGGAGAGTGCC+AGG 0.476026 7_3:-44098924 None:intergenic
AATATGACTGGAACCAAAGA+TGG 0.477110 7_3:-44099216 None:intergenic
GTGGTGGGTGAAGTAGTTAT+TGG 0.479572 7_3:-44099318 None:intergenic
GCTGGCGCTGTGACAAGCTT+TGG 0.480343 7_3:+44098778 Msa1105540:CDS
GGTTGGAATTGGAGGTCTGA+GGG 0.482075 7_3:+44100190 Msa1105540:CDS
CTGGTGTTATTAAATGTCGC+CGG 0.482263 7_3:+44100335 Msa1105540:CDS
CGGTTGGCTGATTGTGCCAT+TGG 0.488142 7_3:+44098816 Msa1105540:CDS
ATCCATGATTGTAAGCCGAC+TGG 0.492456 7_3:+44099125 Msa1105540:CDS
GCCGCAGCTCCTCTTCCTGA+TGG 0.492712 7_3:-44100244 None:intergenic
CAGCGCCAGCAGTCATCCAT+TGG 0.493207 7_3:-44098765 None:intergenic
CATTGTCCTCCATCCAAAAT+GGG 0.494585 7_3:-44099174 None:intergenic
TCCTGAGGAGATTGCTTCCA+TGG 0.495371 7_3:+44095884 Msa1105540:CDS
TCTCTGTCTAATTGCGCTGA+TGG 0.499109 7_3:+44099254 Msa1105540:CDS
TGGTGTTATTAAATGTCGCC+GGG 0.500739 7_3:+44100336 Msa1105540:CDS
GTAGTTATTGGAAACGGTAA+TGG 0.501809 7_3:-44099306 None:intergenic
TTCATTAGAATCAATAGCAT+TGG 0.503173 7_3:-44095258 None:intergenic
TACAGGGTCCGGAGTATGGA+AGG 0.503644 7_3:+44100168 Msa1105540:CDS
GTGAAGCAACAATGGAGTTA+CGG 0.503946 7_3:+44095180 Msa1105540:exon
TTAGTCGGAACTTTAACTGC+AGG 0.504457 7_3:+44100310 Msa1105540:CDS
GAATGTATTGATCAAATAGT+TGG 0.508802 7_3:+44100898 Msa1105540:three_prime_UTR
AAGAAGCGTGATAGCGAGAA+TGG 0.510985 7_3:-44095225 None:intergenic
CCCAAAATGGTTGTATGCAA+TGG 0.513203 7_3:-44099561 None:intergenic
GGGCAAGGTATCTGTTGCCT+TGG 0.513269 7_3:-44100004 None:intergenic
GAAATCCAATGGATGACTGC+TGG 0.513725 7_3:+44098760 Msa1105540:CDS
GTGATCAATCCAAATATGAC+TGG 0.515085 7_3:-44099228 None:intergenic
TTGTTATAGTAGATTTGGAT+TGG 0.515669 7_3:+44100524 Msa1105540:three_prime_UTR
ATTGGAAACGGTAATGGCGG+TGG 0.517945 7_3:-44099300 None:intergenic
GTCACGCCGTCATTCAAGAT+AGG 0.520035 7_3:+44098937 Msa1105540:CDS
GAATCCCTTGGAAAATTAGA+GGG 0.523122 7_3:-44100730 None:intergenic
CATGATGATAGTGTTGTGAA+TGG 0.528531 7_3:+44095433 Msa1105540:intron
CTTTGGCAAAAGGGTTCTGA+GGG 0.532600 7_3:-44100025 None:intergenic
GTACCGCCGCAGAAAGCGGT+TGG 0.543660 7_3:+44098800 Msa1105540:CDS
AATAGTAATGCATGCTCCAA+AGG 0.544329 7_3:-44099066 None:intergenic
TCTTTGGCAAAAGGGTTCTG+AGG 0.544752 7_3:-44100026 None:intergenic
TCCATGATTGTAAGCCGACT+GGG 0.546175 7_3:+44099126 Msa1105540:CDS
ACCATGGAAGCAATCTCCTC+AGG 0.547358 7_3:-44095885 None:intergenic
GAGCTTGAATAATTCATCAA+TGG 0.547562 7_3:+44095477 Msa1105540:CDS
AAGAGGGTGGATACAGGGTC+CGG 0.551709 7_3:+44100157 Msa1105540:CDS
TCAATTTACCTCGTTGTGGT+GGG 0.552926 7_3:-44099333 None:intergenic
TTGGGGAGGGTCTTATCCAA+AGG 0.555778 7_3:+44099579 Msa1105540:CDS
TCCTCCATCCAAAATGGGAA+GGG 0.556374 7_3:-44099169 None:intergenic
TAGAAAGACAAAGAAACTAA+GGG 0.556379 7_3:-44100774 None:intergenic
AGACAAAGAAACTAAGGGGA+AGG 0.557948 7_3:-44100769 None:intergenic
AAAACAGAGTGAAGCAACAA+TGG 0.561784 7_3:+44095172 Msa1105540:exon
GGTCCGGAGTATGGAAGGGT+TGG 0.562652 7_3:+44100173 Msa1105540:CDS
AATGCTATCGGTGGCCGCGA+TGG 0.563732 7_3:+44098849 Msa1105540:CDS
ATCACCAATGTCATCATCCA+TGG 0.564338 7_3:+44099095 Msa1105540:CDS
CTATCGGTGGCCGCGATGGA+AGG 0.564428 7_3:+44098853 Msa1105540:CDS
GTCTTATCCAAAGGATGCCA+AGG 0.567344 7_3:+44099588 Msa1105540:CDS
GGTGAAGTAGTTATTGGAAA+CGG 0.568326 7_3:-44099312 None:intergenic
GGAACTTTAACTGCAGGTGC+TGG 0.568678 7_3:+44100316 Msa1105540:CDS
GCCAAATCATCTTCATTAGT+CGG 0.570138 7_3:+44100295 Msa1105540:CDS
GACCCCGTGAACCCAAGACC+TGG 0.571184 7_3:+44098906 Msa1105540:CDS
GTCCTCCATCCAAAATGGGA+AGG 0.575724 7_3:-44099170 None:intergenic
CAGCCAACCGCTTTCTGCGG+CGG 0.578877 7_3:-44098803 None:intergenic
TGTATTAACACATGCCACCC+CGG 0.580417 7_3:-44100354 None:intergenic
TACGCAATCACACGGAGAGA+AGG 0.580498 7_3:+44098709 Msa1105540:CDS
AGAGGGGTACACTATTCCAC+AGG 0.581096 7_3:-44100809 None:intergenic
TGCCAGGTCTTGGGTTCACG+GGG 0.582221 7_3:-44098908 None:intergenic
TGACAAAGAGGGTGGATACA+GGG 0.585715 7_3:+44100152 Msa1105540:CDS
GGGTTGGAATTGGAGGTCTG+AGG 0.587913 7_3:+44100189 Msa1105540:CDS
CCTCCATCCAAAATGGGAAG+GGG 0.592528 7_3:-44099168 None:intergenic
CAATGGCCTATCTTGAATGA+CGG 0.593970 7_3:-44098943 None:intergenic
AATCAGCCAACCGCTTTCTG+CGG 0.594304 7_3:-44098806 None:intergenic
TAAACAATGACTATACACAC+TGG 0.595352 7_3:+44099937 Msa1105540:CDS
TAATCTCCAAAAGTGAGAGA+TGG 0.597530 7_3:-44100687 None:intergenic
ATAATTCATCAATGGCGGAA+AGG 0.597934 7_3:+44095485 Msa1105540:CDS
AGTCTCAATTTACCTCGTTG+TGG 0.602217 7_3:-44099337 None:intergenic
CAAAAGGGTTCTGAGGGGCA+AGG 0.604683 7_3:-44100019 None:intergenic
AATCATGGATATGGACACCA+TGG 0.604716 7_3:-44099112 None:intergenic
GACAAAGAAACTAAGGGGAA+GGG 0.605532 7_3:-44100768 None:intergenic
TCCAAAGGCAATATGAACAT+TGG 0.605546 7_3:-44099051 None:intergenic
TGATTTGGCCCCTAAACTTG+AGG 0.605907 7_3:-44100281 None:intergenic
ATTCCAACCCTTCCATACTC+CGG 0.611120 7_3:-44100176 None:intergenic
CTTGAATAATTCATCAATGG+CGG 0.613119 7_3:+44095480 Msa1105540:CDS
TTCAAGACCATAGATGGTCG+TGG 0.615460 7_3:+44099026 Msa1105540:CDS
GTTATTAAATGTCGCCGGGG+TGG 0.616534 7_3:+44100340 Msa1105540:CDS
TATCTTGAATGACGGCGTGA+CGG 0.616846 7_3:-44098935 None:intergenic
AGGACAATGGCTGATGGTGA+TGG 0.620179 7_3:+44099188 Msa1105540:CDS
TTTGGTCGCAATGCTATCGG+TGG 0.622293 7_3:+44098840 Msa1105540:CDS
GTGTGGGACTGGAAATCCAA+TGG 0.622592 7_3:+44098749 Msa1105540:CDS
TCATTCAAGATAGGCCATTG+TGG 0.624115 7_3:+44098946 Msa1105540:CDS
CTATTGATTCTAATGAATCA+CGG 0.625598 7_3:+44095264 Msa1105540:CDS
TAAGCCGACTGGGAATGCTA+TGG 0.626089 7_3:+44099136 Msa1105540:CDS
TTTGGTACCGCCGCAGAAAG+CGG 0.627376 7_3:+44098796 Msa1105540:CDS
TCCATCAGGAAGAGGAGCTG+CGG 0.628803 7_3:+44100243 Msa1105540:CDS
TGGGTGATGTATGCTATTGG+AGG 0.631164 7_3:+44099957 Msa1105540:CDS
CAGGACTATACGCAATCACA+CGG 0.632843 7_3:+44098701 Msa1105540:intron
GGATGGAGGACAATGGCTGA+TGG 0.643191 7_3:+44099182 Msa1105540:CDS
AAACAATGACTATACACACT+GGG 0.644998 7_3:+44099938 Msa1105540:CDS
TGCTAGAGCCTCAAGTTTAG+GGG 0.654577 7_3:+44100273 Msa1105540:CDS
ACAGGGTCCGGAGTATGGAA+GGG 0.658271 7_3:+44100169 Msa1105540:CDS
GAATTATTACGTATCAACCA+TGG 0.659930 7_3:-44095901 None:intergenic
CTCTTGAACACAATCCACAA+TGG 0.663084 7_3:-44098960 None:intergenic
TGGACAGGTGACAAAGAGGG+TGG 0.664985 7_3:+44100144 Msa1105540:intron
GAACCCACAATTAACAGCCA+AGG 0.665968 7_3:+44099987 Msa1105540:CDS
GAATATTGCAGATGTAGACA+CGG 0.668694 7_3:+44099900 Msa1105540:intron
AGCATTGCGACCAAAACCAA+TGG 0.669104 7_3:-44098832 None:intergenic
ACTGTTGACAAGATAAACAG+TGG 0.669346 7_3:-44100587 None:intergenic
AGAAAGACAAAGAAACTAAG+GGG 0.669765 7_3:-44100773 None:intergenic
GTTATTGGAAACGGTAATGG+CGG 0.672422 7_3:-44099303 None:intergenic
GGTACACTATTCCACAGGGG+AGG 0.673688 7_3:-44100804 None:intergenic
GGCACACATACACAATCGAG+AGG 0.676491 7_3:-44100827 None:intergenic
GACACCATGGATGATGACAT+TGG 0.680615 7_3:-44099099 None:intergenic
GCACACATACACAATCGAGA+GGG 0.683744 7_3:-44100826 None:intergenic
AATATTGCAGATGTAGACAC+GGG 0.684120 7_3:+44099901 Msa1105540:intron
GAGGGGTACACTATTCCACA+GGG 0.684890 7_3:-44100808 None:intergenic
TCTATATGTATCCTCCCCTG+TGG 0.690350 7_3:+44100793 Msa1105540:three_prime_UTR
CTGTTGACAAGATAAACAGT+GGG 0.691709 7_3:-44100586 None:intergenic
ATGTGGACAGGTGACAAAGA+GGG 0.696684 7_3:+44100141 Msa1105540:intron
CACACATACACAATCGAGAG+GGG 0.700555 7_3:-44100825 None:intergenic
CGAACCATAGCATTCCCAGT+CGG 0.703490 7_3:-44099140 None:intergenic
GCATGCAGTTGATAATCCTG+AGG 0.704437 7_3:+44095869 Msa1105540:CDS
GATGTGGACAGGTGACAAAG+AGG 0.712511 7_3:+44100140 Msa1105540:intron
TATAGTCATTGTTTACCACG+TGG 0.716427 7_3:-44099929 None:intergenic
TTTGGCAAAAGGGTTCTGAG+GGG 0.747633 7_3:-44100024 None:intergenic
GGTGTTATTAAATGTCGCCG+GGG 0.749848 7_3:+44100337 Msa1105540:CDS
GATTGTGTTCAAGAGAGACA+TGG 0.751862 7_3:+44098968 Msa1105540:CDS
CAACGTAGTACCTTCCATCG+CGG 0.762653 7_3:-44098863 None:intergenic
CTACTTCACCCACCACAACG+AGG 0.767107 7_3:+44099325 Msa1105540:CDS
TAGACACGGGTATTTCCACG+TGG 0.797672 7_3:+44099914 Msa1105540:CDS
AGGGGTACACTATTCCACAG+GGG 0.822508 7_3:-44100807 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTGTAATGATTAAAAT+CGG + chr7_3:44095575-44095594 Msa1105540:intron 10.0%
!! TTATAATTAATGACATTTAT+AGG + chr7_3:44096809-44096828 Msa1105540:intron 10.0%
!! TCATATTAAAAAATTAGAAA+AGG - chr7_3:44097571-44097590 None:intergenic 10.0%
!! TTTAGATAAAAAAATTGAGT+TGG + chr7_3:44096083-44096102 Msa1105540:intron 15.0%
!! TATTCACAACAAATTATAAA+TGG - chr7_3:44096474-44096493 None:intergenic 15.0%
!! AAAAAAAAAACATTTGGAAA+TGG - chr7_3:44096523-44096542 None:intergenic 15.0%
!! CCATAAAAAAAAAAAACATT+TGG - chr7_3:44096529-44096548 None:intergenic 15.0%
!!! CCAAATGTTTTTTTTTTTTA+TGG + chr7_3:44096526-44096545 Msa1105540:intron 15.0%
!!! TTTTTTTTTTATGGTTAAAG+TGG + chr7_3:44096535-44096554 Msa1105540:intron 15.0%
!! TATTAATTATATAAAACCAG+AGG - chr7_3:44097045-44097064 None:intergenic 15.0%
!! ATCTAAATCTATCAATAAAA+AGG - chr7_3:44097377-44097396 None:intergenic 15.0%
!!! TAACTTCTAAAATTTTTAGT+AGG + chr7_3:44097913-44097932 Msa1105540:intron 15.0%
!! AATATATCAAGAAAATGTTA+TGG - chr7_3:44098143-44098162 None:intergenic 15.0%
!!! AACATTTTCTTGATATATTT+TGG + chr7_3:44098144-44098163 Msa1105540:intron 15.0%
!!! AGTATAACTTCTAAAATTAT+TGG + chr7_3:44098585-44098604 Msa1105540:intron 15.0%
!!! ATACTTGTTAAATTTTAAAC+AGG + chr7_3:44098682-44098701 Msa1105540:intron 15.0%
!!! TTATTTTTTTTCCTTTTTGA+AGG + chr7_3:44099635-44099654 Msa1105540:intron 15.0%
!!! TTTAGTACTAGTATTTATTT+TGG + chr7_3:44099668-44099687 Msa1105540:intron 15.0%
!!! TTAGTACTAGTATTTATTTT+GGG + chr7_3:44099669-44099688 Msa1105540:intron 15.0%
!! TGATAAACTTTACTAAATAT+TGG + chr7_3:44100110-44100129 Msa1105540:intron 15.0%
!! GAATTAAAAAAGAAAAGAAA+AGG + chr7_3:44100434-44100453 Msa1105540:three_prime_UTR 15.0%
!!! CTTTTTCATCAAAATTAATC+AGG - chr7_3:44096615-44096634 None:intergenic 20.0%
!!! TGGTGATATTTATTTTGAAA+AGG - chr7_3:44096841-44096860 None:intergenic 20.0%
!! TTTCAAAATAAATATCACCA+TGG + chr7_3:44096841-44096860 Msa1105540:intron 20.0%
!! AATATAAAGGTCATCAAATA+GGG - chr7_3:44096961-44096980 None:intergenic 20.0%
!!! AAAAGCATCAAAGAATATAA+AGG - chr7_3:44096974-44096993 None:intergenic 20.0%
!! ATTAAAATGACTCTAGTAAA+AGG - chr7_3:44097019-44097038 None:intergenic 20.0%
!!! ATAATTCTAAAAACATCATG+AGG - chr7_3:44097683-44097702 None:intergenic 20.0%
!! AAGTATAAAAAGACAAACAA+GGG - chr7_3:44097715-44097734 None:intergenic 20.0%
!! TAGAGAAAATTGAAATATGA+TGG + chr7_3:44098323-44098342 Msa1105540:intron 20.0%
!! TTAAAAGGTAGTATTAGAAA+AGG - chr7_3:44099412-44099431 None:intergenic 20.0%
!! ATAAATACTAGTACTAAAAC+TGG - chr7_3:44099666-44099685 None:intergenic 20.0%
!! AAATATTGGAAAATTTGATG+TGG + chr7_3:44100124-44100143 Msa1105540:intron 20.0%
!! TATAACAATGCAATAATAAG+AGG - chr7_3:44100512-44100531 None:intergenic 20.0%
!!! AAAATAAATTTTGAATCCCT+TGG - chr7_3:44100745-44100764 None:intergenic 20.0%
!!! TCAAGTGTTTTCTAAATAAA+TGG - chr7_3:44100851-44100870 None:intergenic 20.0%
! TTCATTAGAATCAATAGCAT+TGG - chr7_3:44095261-44095280 None:intergenic 25.0%
!!! CTATTGATTCTAATGAATCA+CGG + chr7_3:44095264-44095283 Msa1105540:CDS 25.0%
! TTGTAGTAAAACAGAATCAA+CGG - chr7_3:44095734-44095753 None:intergenic 25.0%
! TCGTTTAGTGATGATTTAAA+CGG + chr7_3:44095782-44095801 Msa1105540:intron 25.0%
!! CTTTTATCCTAATTTGAATC+TGG + chr7_3:44096005-44096024 Msa1105540:intron 25.0%
! GAGTTGCATATGATATTTAT+TGG + chr7_3:44096050-44096069 Msa1105540:intron 25.0%
!!! ATTGAGTTGGAGTATTTTTT+TGG + chr7_3:44096096-44096115 Msa1105540:intron 25.0%
! AATACAAACTAAAACCAAGT+GGG - chr7_3:44096289-44096308 None:intergenic 25.0%
! AAATACAAACTAAAACCAAG+TGG - chr7_3:44096290-44096309 None:intergenic 25.0%
! ACAATTAGATGTGCTTAATA+TGG + chr7_3:44096400-44096419 Msa1105540:intron 25.0%
!!! TTTGTTGTGAATACTCTTTT+TGG + chr7_3:44096481-44096500 Msa1105540:intron 25.0%
!!! ATTTTGATGAAAAAGTGAGT+TGG + chr7_3:44096620-44096639 Msa1105540:intron 25.0%
! TAAATATCACCATGGAAAAA+CGG + chr7_3:44096849-44096868 Msa1105540:intron 25.0%
! ACAATTTCTAACTTTCTTGA+CGG - chr7_3:44096877-44096896 None:intergenic 25.0%
! AAATTGTATGAGTAATTGCA+TGG + chr7_3:44096890-44096909 Msa1105540:intron 25.0%
! AATTGTATGAGTAATTGCAT+GGG + chr7_3:44096891-44096910 Msa1105540:intron 25.0%
! GAATATAAAGGTCATCAAAT+AGG - chr7_3:44096962-44096981 None:intergenic 25.0%
! GAAATTTATTATGACCGAAA+TGG - chr7_3:44097221-44097240 None:intergenic 25.0%
!! GTAAAAGCAATTTTCAGATA+AGG - chr7_3:44097265-44097284 None:intergenic 25.0%
! AAGCTTAGATTGAGTATAAA+GGG - chr7_3:44097598-44097617 None:intergenic 25.0%
! TAAGCTTAGATTGAGTATAA+AGG - chr7_3:44097599-44097618 None:intergenic 25.0%
! ACTCAATCTAAGCTTAATTA+TGG + chr7_3:44097603-44097622 Msa1105540:intron 25.0%
! GAAGTATAAAAAGACAAACA+AGG - chr7_3:44097716-44097735 None:intergenic 25.0%
! GTCTAATCAGAAATTTATGT+GGG - chr7_3:44097738-44097757 None:intergenic 25.0%
! AGTCTAATCAGAAATTTATG+TGG - chr7_3:44097739-44097758 None:intergenic 25.0%
!! GAAGAGTGATTTACTAATTT+TGG - chr7_3:44097827-44097846 None:intergenic 25.0%
!!! TTTTCTTGATATATTTTGGC+TGG + chr7_3:44098148-44098167 Msa1105540:intron 25.0%
! TGGTCATTTAATAAGTTCAT+GGG - chr7_3:44098208-44098227 None:intergenic 25.0%
! TTGGTCATTTAATAAGTTCA+TGG - chr7_3:44098209-44098228 None:intergenic 25.0%
! TTATTAAATGACCAAGATTC+AGG + chr7_3:44098214-44098233 Msa1105540:intron 25.0%
! ATTATTAACTTCCTGAATCT+TGG - chr7_3:44098228-44098247 None:intergenic 25.0%
! TTATTATTGATGTCTGTTGA+GGG - chr7_3:44098439-44098458 None:intergenic 25.0%
! ATTATTATTGATGTCTGTTG+AGG - chr7_3:44098440-44098459 None:intergenic 25.0%
! TTTAGAAGTTATACTGCTAA+GGG - chr7_3:44098580-44098599 None:intergenic 25.0%
!!! TTTTAGAAGTTATACTGCTA+AGG - chr7_3:44098581-44098600 None:intergenic 25.0%
!! TTTTCTGTTCAATTCAACAT+TGG - chr7_3:44098663-44098682 None:intergenic 25.0%
! TTACTTAAGATAATGAAGGA+GGG - chr7_3:44099365-44099384 None:intergenic 25.0%
!! GTTGTTACTTAAGATAATGA+AGG - chr7_3:44099369-44099388 None:intergenic 25.0%
! AATTGAGTTCAAAATGATAC+AGG + chr7_3:44099484-44099503 Msa1105540:intron 25.0%
! ATGAGAAGTCTACTAAAATT+GGG + chr7_3:44099735-44099754 Msa1105540:intron 25.0%
! AGAAATAGACAGAGAATTTA+TGG - chr7_3:44099857-44099876 None:intergenic 25.0%
! TTCTTAGCTAATGAAATATG+TGG + chr7_3:44100073-44100092 Msa1105540:intron 25.0%
!!! TTCTTTTTTTCAGTTTGCAT+GGG - chr7_3:44100417-44100436 None:intergenic 25.0%
!!! ATTCTTTTTTTCAGTTTGCA+TGG - chr7_3:44100418-44100437 None:intergenic 25.0%
! TTGCATTGTTATAGTAGATT+TGG + chr7_3:44100519-44100538 Msa1105540:three_prime_UTR 25.0%
! TTGTTATAGTAGATTTGGAT+TGG + chr7_3:44100524-44100543 Msa1105540:three_prime_UTR 25.0%
! TAGAAAGACAAAGAAACTAA+GGG - chr7_3:44100777-44100796 None:intergenic 25.0%
! ATAGAAAGACAAAGAAACTA+AGG - chr7_3:44100778-44100797 None:intergenic 25.0%
!! GAATGTATTGATCAAATAGT+TGG + chr7_3:44100898-44100917 Msa1105540:three_prime_UTR 25.0%
! TTCTTTCGTTTTCTCTGTTT+TGG - chr7_3:44095154-44095173 None:intergenic 30.0%
GAGCTTGAATAATTCATCAA+TGG + chr7_3:44095477-44095496 Msa1105540:CDS 30.0%
CTTGAATAATTCATCAATGG+CGG + chr7_3:44095480-44095499 Msa1105540:CDS 30.0%
!!! TTTTTTACGAGTGCGATTTT+TGG + chr7_3:44095550-44095569 Msa1105540:intron 30.0%
TGCAGATAATTCTAATCCAA+CGG - chr7_3:44095630-44095649 None:intergenic 30.0%
! TGCATTTTCAGCTTAAGTAA+TGG + chr7_3:44095834-44095853 Msa1105540:intron 30.0%
GAATTATTACGTATCAACCA+TGG - chr7_3:44095904-44095923 None:intergenic 30.0%
TAACGTTCCAGATTCAAATT+AGG - chr7_3:44096015-44096034 None:intergenic 30.0%
CATTTAATTGATCATGTGCA+TGG + chr7_3:44096159-44096178 Msa1105540:intron 30.0%
! GTATTTTCTTCCTCTGTTTT+TGG + chr7_3:44096196-44096215 Msa1105540:intron 30.0%
!!! AACAGTGGCATTGTTATTTT+TGG - chr7_3:44096579-44096598 None:intergenic 30.0%
AATTAATCAGGCAAACACAA+TGG - chr7_3:44096603-44096622 None:intergenic 30.0%
AGCTGGCAAATAAAATATTC+TGG - chr7_3:44097169-44097188 None:intergenic 30.0%
TTTATTATGACCGAAATGGT+CGG - chr7_3:44097217-44097236 None:intergenic 30.0%
! AGTCATGAAGATTGGATTTT+AGG - chr7_3:44097315-44097334 None:intergenic 30.0%
CCACTATACAAGAAATGAAA+GGG - chr7_3:44097431-44097450 None:intergenic 30.0%
ACCACTATACAAGAAATGAA+AGG - chr7_3:44097432-44097451 None:intergenic 30.0%
TACTTTCTCCTATGTTTCTT+TGG + chr7_3:44097493-44097512 Msa1105540:intron 30.0%
TTCGTAAACCAAAGAAACAT+AGG - chr7_3:44097504-44097523 None:intergenic 30.0%
ATCTAAGCTTAATTATGGCT+AGG + chr7_3:44097608-44097627 Msa1105540:intron 30.0%
TCTAAGCTTAATTATGGCTA+GGG + chr7_3:44097609-44097628 Msa1105540:intron 30.0%
CATAAATCTTACACGTTACA+GGG + chr7_3:44097781-44097800 Msa1105540:intron 30.0%
!! AAACTACAAAGGTATTCATG+TGG - chr7_3:44098081-44098100 None:intergenic 30.0%
GTCATTTAATAAGTTCATGG+GGG - chr7_3:44098206-44098225 None:intergenic 30.0%
GGTCATTTAATAAGTTCATG+GGG - chr7_3:44098207-44098226 None:intergenic 30.0%
TACAATAAATGCCAAGTTAG+GGG - chr7_3:44098302-44098321 None:intergenic 30.0%
CTACAATAAATGCCAAGTTA+GGG - chr7_3:44098303-44098322 None:intergenic 30.0%
ACTACAATAAATGCCAAGTT+AGG - chr7_3:44098304-44098323 None:intergenic 30.0%
ATAGAATGATACGGTGTATA+CGG - chr7_3:44098370-44098389 None:intergenic 30.0%
!! ATTCAGTCCTTTAAGACAAA+CGG + chr7_3:44098513-44098532 Msa1105540:intron 30.0%
AAATTACCCGTTTGTCTTAA+AGG - chr7_3:44098523-44098542 None:intergenic 30.0%
GTTACTTAAGATAATGAAGG+AGG - chr7_3:44099366-44099385 None:intergenic 30.0%
AATGATACAGGTTATGCTAT+TGG + chr7_3:44099496-44099515 Msa1105540:intron 30.0%
ATGATACAGGTTATGCTATT+GGG + chr7_3:44099497-44099516 Msa1105540:intron 30.0%
CATGAGAAGTCTACTAAAAT+TGG + chr7_3:44099734-44099753 Msa1105540:intron 30.0%
! TCTATTTCTTGCACTAACAA+TGG + chr7_3:44099868-44099887 Msa1105540:intron 30.0%
TAAACAATGACTATACACAC+TGG + chr7_3:44099937-44099956 Msa1105540:CDS 30.0%
AAACAATGACTATACACACT+GGG + chr7_3:44099938-44099957 Msa1105540:CDS 30.0%
TTGTAAGAATGTTACCTCTT+TGG - chr7_3:44100045-44100064 None:intergenic 30.0%
AAAAAGCTCCATTTAGCAAA+AGG - chr7_3:44100219-44100238 None:intergenic 30.0%
ATCAACAACCAAATGAGTAA+AGG + chr7_3:44100384-44100403 Msa1105540:three_prime_UTR 30.0%
TCAACAACCAAATGAGTAAA+GGG + chr7_3:44100385-44100404 Msa1105540:three_prime_UTR 30.0%
! GAAAGAAAAGCATAAAGGAA+TGG + chr7_3:44100460-44100479 Msa1105540:three_prime_UTR 30.0%
! TCTTGTCAACAGTTAGATTT+TGG + chr7_3:44100597-44100616 Msa1105540:three_prime_UTR 30.0%
! CTTGTCAACAGTTAGATTTT+GGG + chr7_3:44100598-44100617 Msa1105540:three_prime_UTR 30.0%
! ATGAGAACTGTTGTTGTTAT+TGG + chr7_3:44100639-44100658 Msa1105540:three_prime_UTR 30.0%
! ATTTCCCTCTAATTTTCCAA+GGG + chr7_3:44100726-44100745 Msa1105540:three_prime_UTR 30.0%
AGAAAGACAAAGAAACTAAG+GGG - chr7_3:44100776-44100795 None:intergenic 30.0%
!! TTGATTTGTCCCAAATGAAA+TGG + chr7_3:44100867-44100886 Msa1105540:three_prime_UTR 30.0%
! TGATTTGTCCCAAATGAAAT+GGG + chr7_3:44100868-44100887 Msa1105540:three_prime_UTR 30.0%
AAAACAGAGTGAAGCAACAA+TGG + chr7_3:44095172-44095191 Msa1105540:exon 35.0%
! CATGATGATAGTGTTGTGAA+TGG + chr7_3:44095433-44095452 Msa1105540:intron 35.0%
! ATAATTCATCAATGGCGGAA+AGG + chr7_3:44095485-44095504 Msa1105540:CDS 35.0%
TTCTCAAAAGCCAAAAACAG+AGG - chr7_3:44096209-44096228 None:intergenic 35.0%
!!! TGTTTTTGGCTTTTGAGAAG+AGG + chr7_3:44096210-44096229 Msa1105540:intron 35.0%
GCTTAATATGGTCCCATTAA+TGG + chr7_3:44096412-44096431 Msa1105540:intron 35.0%
ACCACAATGCAACCATTAAT+GGG - chr7_3:44096427-44096446 None:intergenic 35.0%
TACTGCAGTGTGGTAATAAA+TGG - chr7_3:44096926-44096945 None:intergenic 35.0%
! TTTTAAATGCTACTGCAGTG+TGG - chr7_3:44096936-44096955 None:intergenic 35.0%
!!! GAGTCATTTTAATTCTCCTC+TGG + chr7_3:44097026-44097045 Msa1105540:intron 35.0%
! GATTGATTCATTAAGCACCA+TGG - chr7_3:44097107-44097126 None:intergenic 35.0%
GTGATTGAAGTCATGAAGAT+TGG - chr7_3:44097323-44097342 None:intergenic 35.0%
CCCTTTCATTTCTTGTATAG+TGG + chr7_3:44097428-44097447 Msa1105540:intron 35.0%
CTAAGCTTAATTATGGCTAG+GGG + chr7_3:44097610-44097629 Msa1105540:intron 35.0%
CCTGTAACGTGTAAGATTTA+TGG - chr7_3:44097783-44097802 None:intergenic 35.0%
CCATAAATCTTACACGTTAC+AGG + chr7_3:44097780-44097799 Msa1105540:intron 35.0%
ATCACTCTTCAGTAGTCAAA+AGG + chr7_3:44097837-44097856 Msa1105540:intron 35.0%
TCACTCTTCAGTAGTCAAAA+GGG + chr7_3:44097838-44097857 Msa1105540:intron 35.0%
! TTGTGTGTTACTGATTACCT+TGG + chr7_3:44097948-44097967 Msa1105540:intron 35.0%
! TGTGTGTTACTGATTACCTT+GGG + chr7_3:44097949-44097968 Msa1105540:intron 35.0%
!!! ACTCTGTTTTTGGTTCTTTC+AGG - chr7_3:44097990-44098009 None:intergenic 35.0%
! GGGTTTATGAACTCTGTTTT+TGG - chr7_3:44098000-44098019 None:intergenic 35.0%
GTTCATAAACCCAGACTATT+AGG + chr7_3:44098008-44098027 Msa1105540:intron 35.0%
GCATGAATTCCTAATAGTCT+GGG - chr7_3:44098020-44098039 None:intergenic 35.0%
TGCATGAATTCCTAATAGTC+TGG - chr7_3:44098021-44098040 None:intergenic 35.0%
AGGATACGGATAGAATGATA+CGG - chr7_3:44098379-44098398 None:intergenic 35.0%
TGGGTCAACAATTAAGGATA+CGG - chr7_3:44098393-44098412 None:intergenic 35.0%
!! TTCAGTCCTTTAAGACAAAC+GGG + chr7_3:44098514-44098533 Msa1105540:intron 35.0%
!!! AGTTTGAGTTTTTTCTCGTG+TGG + chr7_3:44098732-44098751 Msa1105540:CDS 35.0%
!!! GTTTGAGTTTTTTCTCGTGT+GGG + chr7_3:44098733-44098752 Msa1105540:CDS 35.0%
CATGATCAATTCTTGCTTCA+GGG - chr7_3:44099000-44099019 None:intergenic 35.0%
TCATGATCAATTCTTGCTTC+AGG - chr7_3:44099001-44099020 None:intergenic 35.0%
AACAGTTTCAAGACCATAGA+TGG + chr7_3:44099020-44099039 Msa1105540:CDS 35.0%
TCCAAAGGCAATATGAACAT+TGG - chr7_3:44099054-44099073 None:intergenic 35.0%
AATAGTAATGCATGCTCCAA+AGG - chr7_3:44099069-44099088 None:intergenic 35.0%
AATATGACTGGAACCAAAGA+TGG - chr7_3:44099219-44099238 None:intergenic 35.0%
! TCTTTGGTTCCAGTCATATT+TGG + chr7_3:44099219-44099238 Msa1105540:CDS 35.0%
GTGATCAATCCAAATATGAC+TGG - chr7_3:44099231-44099250 None:intergenic 35.0%
!! TGGTCTTGTTGATGCTATTA+TGG + chr7_3:44099274-44099293 Msa1105540:CDS 35.0%
!! GGTCTTGTTGATGCTATTAT+GGG + chr7_3:44099275-44099294 Msa1105540:CDS 35.0%
GTAGTTATTGGAAACGGTAA+TGG - chr7_3:44099309-44099328 None:intergenic 35.0%
GGTGAAGTAGTTATTGGAAA+CGG - chr7_3:44099315-44099334 None:intergenic 35.0%
! ACCATTGCATACAACCATTT+TGG + chr7_3:44099560-44099579 Msa1105540:CDS 35.0%
! CCATTGCATACAACCATTTT+GGG + chr7_3:44099561-44099580 Msa1105540:CDS 35.0%
! CATTGCATACAACCATTTTG+GGG + chr7_3:44099562-44099581 Msa1105540:CDS 35.0%
AATGTTACTGCTAGTTACCT+TGG - chr7_3:44099608-44099627 None:intergenic 35.0%
ACTTCTCATGTCAAATAGAG+AGG - chr7_3:44099724-44099743 None:intergenic 35.0%
ATGACAACTAGACCTCTTTA+TGG + chr7_3:44099763-44099782 Msa1105540:intron 35.0%
! ATTTGGAATGGACCATAAAG+AGG - chr7_3:44099778-44099797 None:intergenic 35.0%
! AACACTCTTTAGAAGAACAG+AGG - chr7_3:44099820-44099839 None:intergenic 35.0%
GAATATTGCAGATGTAGACA+CGG + chr7_3:44099900-44099919 Msa1105540:intron 35.0%
AATATTGCAGATGTAGACAC+GGG + chr7_3:44099901-44099920 Msa1105540:intron 35.0%
TATAGTCATTGTTTACCACG+TGG - chr7_3:44099932-44099951 None:intergenic 35.0%
ATGTTACCTCTTTGGCAAAA+GGG - chr7_3:44100037-44100056 None:intergenic 35.0%
AATGTTACCTCTTTGGCAAA+AGG - chr7_3:44100038-44100057 None:intergenic 35.0%
TTGGAAAATTTGATGTGGAC+AGG + chr7_3:44100129-44100148 Msa1105540:intron 35.0%
GCCAAATCATCTTCATTAGT+CGG + chr7_3:44100295-44100314 Msa1105540:CDS 35.0%
TCCGACTAATGAAGATGATT+TGG - chr7_3:44100299-44100318 None:intergenic 35.0%
GTTCTTTCCCTTTACTCATT+TGG - chr7_3:44100395-44100414 None:intergenic 35.0%
! GGAGAGAAAGAAAAGCATAA+AGG + chr7_3:44100455-44100474 Msa1105540:three_prime_UTR 35.0%
CTGTTGACAAGATAAACAGT+GGG - chr7_3:44100589-44100608 None:intergenic 35.0%
ACTGTTGACAAGATAAACAG+TGG - chr7_3:44100590-44100609 None:intergenic 35.0%
TAATCTCCAAAAGTGAGAGA+TGG - chr7_3:44100690-44100709 None:intergenic 35.0%
!! CTCTCACTTTTGGAGATTAT+TGG + chr7_3:44100691-44100710 Msa1105540:three_prime_UTR 35.0%
! GATTTCCCTCTAATTTTCCA+AGG + chr7_3:44100725-44100744 Msa1105540:three_prime_UTR 35.0%
GAATCCCTTGGAAAATTAGA+GGG - chr7_3:44100733-44100752 None:intergenic 35.0%
TGAATCCCTTGGAAAATTAG+AGG - chr7_3:44100734-44100753 None:intergenic 35.0%
GTGAAGCAACAATGGAGTTA+CGG + chr7_3:44095180-44095199 Msa1105540:exon 40.0%
! CATAAAGGTGTAGATACCGT+TGG + chr7_3:44095611-44095630 Msa1105540:intron 40.0%
GCAAACAGTACTATTTGCGT+CGG + chr7_3:44095683-44095702 Msa1105540:intron 40.0%
TCCCATTAATGGTTGCATTG+TGG + chr7_3:44096423-44096442 Msa1105540:intron 40.0%
GACCACAATGCAACCATTAA+TGG - chr7_3:44096428-44096447 None:intergenic 40.0%
GTATGAGTAATTGCATGGGA+AGG + chr7_3:44096895-44096914 Msa1105540:intron 40.0%
GCAGTGTGGTAATAAATGGT+GGG - chr7_3:44096922-44096941 None:intergenic 40.0%
TGCAGTGTGGTAATAAATGG+TGG - chr7_3:44096923-44096942 None:intergenic 40.0%
GATTCATTAAGCACCATGGA+AGG - chr7_3:44097103-44097122 None:intergenic 40.0%
ATCGCCATGTTCTTTGCATA+TGG + chr7_3:44097124-44097143 Msa1105540:intron 40.0%
TCGCCATGTTCTTTGCATAT+GGG + chr7_3:44097125-44097144 Msa1105540:intron 40.0%
GATCCCATATGCAAAGAACA+TGG - chr7_3:44097131-44097150 None:intergenic 40.0%
ACATTAGCATGTGGTTAAGC+TGG - chr7_3:44097186-44097205 None:intergenic 40.0%
GATCTCAGAACATTAGCATG+TGG - chr7_3:44097195-44097214 None:intergenic 40.0%
CCAAGACATGTGTTTAAGAG+GGG - chr7_3:44097455-44097474 None:intergenic 40.0%
GCCAAGACATGTGTTTAAGA+GGG - chr7_3:44097456-44097475 None:intergenic 40.0%
CTCTTAAACACATGTCTTGG+CGG + chr7_3:44097455-44097474 Msa1105540:intron 40.0%
GGGACACATTTCAGTATTCA+GGG + chr7_3:44097630-44097649 Msa1105540:intron 40.0%
ACAGGCTGTAGAAACTACAA+AGG - chr7_3:44098092-44098111 None:intergenic 40.0%
!!! TTAGGGGAGATCTAGTTTTG+GGG - chr7_3:44098286-44098305 None:intergenic 40.0%
!!! GTTAGGGGAGATCTAGTTTT+GGG - chr7_3:44098287-44098306 None:intergenic 40.0%
!! AGTTAGGGGAGATCTAGTTT+TGG - chr7_3:44098288-44098307 None:intergenic 40.0%
AAACTAGATCTCCCCTAACT+TGG + chr7_3:44098288-44098307 Msa1105540:intron 40.0%
GTCATGTGGGTCAACAATTA+AGG - chr7_3:44098399-44098418 None:intergenic 40.0%
CAATGGCCTATCTTGAATGA+CGG - chr7_3:44098946-44098965 None:intergenic 40.0%
TCATTCAAGATAGGCCATTG+TGG + chr7_3:44098946-44098965 Msa1105540:CDS 40.0%
CTCTTGAACACAATCCACAA+TGG - chr7_3:44098963-44098982 None:intergenic 40.0%
GATTGTGTTCAAGAGAGACA+TGG + chr7_3:44098968-44098987 Msa1105540:CDS 40.0%
GCCAATGTTCATATTGCCTT+TGG + chr7_3:44099050-44099069 Msa1105540:CDS 40.0%
ATCACCAATGTCATCATCCA+TGG + chr7_3:44099095-44099114 Msa1105540:CDS 40.0%
AATCATGGATATGGACACCA+TGG - chr7_3:44099115-44099134 None:intergenic 40.0%
TCGGCTTACAATCATGGATA+TGG - chr7_3:44099124-44099143 None:intergenic 40.0%
CATTGTCCTCCATCCAAAAT+GGG - chr7_3:44099177-44099196 None:intergenic 40.0%
! GTTATTGGAAACGGTAATGG+CGG - chr7_3:44099306-44099325 None:intergenic 40.0%
TCAATTTACCTCGTTGTGGT+GGG - chr7_3:44099336-44099355 None:intergenic 40.0%
AGTCTCAATTTACCTCGTTG+TGG - chr7_3:44099340-44099359 None:intergenic 40.0%
CCCAAAATGGTTGTATGCAA+TGG - chr7_3:44099564-44099583 None:intergenic 40.0%
GAGACACTAGGAATTTGGAA+TGG - chr7_3:44099790-44099809 None:intergenic 40.0%
CAAATTCCTAGTGTCTCAGA+GGG + chr7_3:44099793-44099812 Msa1105540:intron 40.0%
TTGCCTTGGCTGTTAATTGT+GGG - chr7_3:44099993-44100012 None:intergenic 40.0%
! TTTTTCACTCCATCAGGAAG+AGG + chr7_3:44100235-44100254 Msa1105540:CDS 40.0%
TATGCTAGAGCCTCAAGTTT+AGG + chr7_3:44100271-44100290 Msa1105540:CDS 40.0%
ATGCTAGAGCCTCAAGTTTA+GGG + chr7_3:44100272-44100291 Msa1105540:CDS 40.0%
TTAGTCGGAACTTTAACTGC+AGG + chr7_3:44100310-44100329 Msa1105540:CDS 40.0%
!! CTGGTGTTATTAAATGTCGC+CGG + chr7_3:44100335-44100354 Msa1105540:CDS 40.0%
!! TGGTGTTATTAAATGTCGCC+GGG + chr7_3:44100336-44100355 Msa1105540:CDS 40.0%
! TAGAAGCCATCTCTCACTTT+TGG + chr7_3:44100681-44100700 Msa1105540:three_prime_UTR 40.0%
GACAAAGAAACTAAGGGGAA+GGG - chr7_3:44100771-44100790 None:intergenic 40.0%
AGACAAAGAAACTAAGGGGA+AGG - chr7_3:44100772-44100791 None:intergenic 40.0%
TCCCAAATGAAATGGGCAAT+AGG + chr7_3:44100875-44100894 Msa1105540:three_prime_UTR 40.0%
CCCTATTGCCCATTTCATTT+GGG - chr7_3:44100879-44100898 None:intergenic 40.0%
CCCAAATGAAATGGGCAATA+GGG + chr7_3:44100876-44100895 Msa1105540:three_prime_UTR 40.0%
TCCCTATTGCCCATTTCATT+TGG - chr7_3:44100880-44100899 None:intergenic 40.0%
! AAGAAGCGTGATAGCGAGAA+TGG - chr7_3:44095228-44095247 None:intergenic 45.0%
TTAAAATCGGAGCGTACACG+TGG + chr7_3:44095588-44095607 Msa1105540:intron 45.0%
CTGCATGAGATAGCTCAGAA+TGG + chr7_3:44095645-44095664 Msa1105540:intron 45.0%
! ACTATTTGCGTCGGTCAGAT+CGG + chr7_3:44095692-44095711 Msa1105540:intron 45.0%
!! GCATGCAGTTGATAATCCTG+AGG + chr7_3:44095869-44095888 Msa1105540:CDS 45.0%
GGCAAACACAATGGAAACAG+TGG - chr7_3:44096594-44096613 None:intergenic 45.0%
TGAGCAGAGCTTACGATACA+AGG + chr7_3:44096748-44096767 Msa1105540:intron 45.0%
!! CGTTCTGAAGTTTCCTTCCA+TGG + chr7_3:44097087-44097106 Msa1105540:intron 45.0%
!! GTTCTGAGATCCGACCATTT+CGG + chr7_3:44097204-44097223 Msa1105540:intron 45.0%
CCCCTCTTAAACACATGTCT+TGG + chr7_3:44097452-44097471 Msa1105540:intron 45.0%
CGCCAAGACATGTGTTTAAG+AGG - chr7_3:44097457-44097476 None:intergenic 45.0%
GGGGACACATTTCAGTATTC+AGG + chr7_3:44097629-44097648 Msa1105540:intron 45.0%
GTAAGTGATCAAGAGACCCA+AGG - chr7_3:44097968-44097987 None:intergenic 45.0%
GATGCATTGTGCTTGTAGAC+AGG - chr7_3:44098110-44098129 None:intergenic 45.0%
CTACAAGCACAATGCATCTC+TGG + chr7_3:44098112-44098131 Msa1105540:intron 45.0%
!!! GAGATCTAGTTTTGGGGTGT+CGG - chr7_3:44098280-44098299 None:intergenic 45.0%
GTATACGGAATAACGAGGGT+TGG - chr7_3:44098355-44098374 None:intergenic 45.0%
CGGTGTATACGGAATAACGA+GGG - chr7_3:44098359-44098378 None:intergenic 45.0%
ACGGTGTATACGGAATAACG+AGG - chr7_3:44098360-44098379 None:intergenic 45.0%
CAGGACTATACGCAATCACA+CGG + chr7_3:44098701-44098720 Msa1105540:intron 45.0%
!!! AGTTTTTTCTCGTGTGGGAC+TGG + chr7_3:44098738-44098757 Msa1105540:CDS 45.0%
GAAATCCAATGGATGACTGC+TGG + chr7_3:44098760-44098779 Msa1105540:CDS 45.0%
!!! GCTGATTGTGCCATTGGTTT+TGG + chr7_3:44098822-44098841 Msa1105540:CDS 45.0%
AGCATTGCGACCAAAACCAA+TGG - chr7_3:44098835-44098854 None:intergenic 45.0%
!! GGTTTTGGTCGCAATGCTAT+CGG + chr7_3:44098837-44098856 Msa1105540:CDS 45.0%
TATCTTGAATGACGGCGTGA+CGG - chr7_3:44098938-44098957 None:intergenic 45.0%
TTCAAGACCATAGATGGTCG+TGG + chr7_3:44099026-44099045 Msa1105540:CDS 45.0%
GACACCATGGATGATGACAT+TGG - chr7_3:44099102-44099121 None:intergenic 45.0%
ATCCATGATTGTAAGCCGAC+TGG + chr7_3:44099125-44099144 Msa1105540:CDS 45.0%
TCCATGATTGTAAGCCGACT+GGG + chr7_3:44099126-44099145 Msa1105540:CDS 45.0%
TCCTCCATCCAAAATGGGAA+GGG - chr7_3:44099172-44099191 None:intergenic 45.0%
CCATTGTCCTCCATCCAAAA+TGG - chr7_3:44099178-44099197 None:intergenic 45.0%
! CCATTTTGGATGGAGGACAA+TGG + chr7_3:44099175-44099194 Msa1105540:CDS 45.0%
! GGTGATGGCATTTCCATCTT+TGG + chr7_3:44099203-44099222 Msa1105540:CDS 45.0%
TCTCTGTCTAATTGCGCTGA+TGG + chr7_3:44099254-44099273 Msa1105540:CDS 45.0%
!! GTGGTGGGTGAAGTAGTTAT+TGG - chr7_3:44099321-44099340 None:intergenic 45.0%
CTCAATTTACCTCGTTGTGG+TGG - chr7_3:44099337-44099356 None:intergenic 45.0%
!! TGCATACAACCATTTTGGGG+AGG + chr7_3:44099565-44099584 Msa1105540:CDS 45.0%
!! GCATACAACCATTTTGGGGA+GGG + chr7_3:44099566-44099585 Msa1105540:CDS 45.0%
GTCTTATCCAAAGGATGCCA+AGG + chr7_3:44099588-44099607 Msa1105540:CDS 45.0%
CTAGTTACCTTGGCATCCTT+TGG - chr7_3:44099598-44099617 None:intergenic 45.0%
AACTGGACGCTCCTTCAAAA+AGG - chr7_3:44099649-44099668 None:intergenic 45.0%
CAAATAGAGAGGCTCAGCTT+AGG - chr7_3:44099713-44099732 None:intergenic 45.0%
!! CCTCTGAGACACTAGGAATT+TGG - chr7_3:44099795-44099814 None:intergenic 45.0%
CCAAATTCCTAGTGTCTCAG+AGG + chr7_3:44099792-44099811 Msa1105540:intron 45.0%
CACTGGGTGATGTATGCTAT+TGG + chr7_3:44099954-44099973 Msa1105540:CDS 45.0%
TGGGTGATGTATGCTATTGG+AGG + chr7_3:44099957-44099976 Msa1105540:CDS 45.0%
GAACCCACAATTAACAGCCA+AGG + chr7_3:44099987-44100006 Msa1105540:CDS 45.0%
GTTGCCTTGGCTGTTAATTG+TGG - chr7_3:44099994-44100013 None:intergenic 45.0%
!! TTTGGCAAAAGGGTTCTGAG+GGG - chr7_3:44100027-44100046 None:intergenic 45.0%
! CTTTGGCAAAAGGGTTCTGA+GGG - chr7_3:44100028-44100047 None:intergenic 45.0%
TCTTTGGCAAAAGGGTTCTG+AGG - chr7_3:44100029-44100048 None:intergenic 45.0%
! TCAGAACCCTTTTGCCAAAG+AGG + chr7_3:44100028-44100047 Msa1105540:CDS 45.0%
ATGTGGACAGGTGACAAAGA+GGG + chr7_3:44100141-44100160 Msa1105540:intron 45.0%
TGACAAAGAGGGTGGATACA+GGG + chr7_3:44100152-44100171 Msa1105540:CDS 45.0%
ATTCCAACCCTTCCATACTC+CGG - chr7_3:44100179-44100198 None:intergenic 45.0%
GAGTATGGAAGGGTTGGAAT+TGG + chr7_3:44100179-44100198 Msa1105540:CDS 45.0%
TATGGAAGGGTTGGAATTGG+AGG + chr7_3:44100182-44100201 Msa1105540:CDS 45.0%
! GAGGGAGACCTTTTGCTAAA+TGG + chr7_3:44100208-44100227 Msa1105540:CDS 45.0%
!!! GGAGCTTTTTTCACTCCATC+AGG + chr7_3:44100229-44100248 Msa1105540:CDS 45.0%
TGCTAGAGCCTCAAGTTTAG+GGG + chr7_3:44100273-44100292 Msa1105540:CDS 45.0%
! TGATTTGGCCCCTAAACTTG+AGG - chr7_3:44100284-44100303 None:intergenic 45.0%
!! GGTGTTATTAAATGTCGCCG+GGG + chr7_3:44100337-44100356 Msa1105540:CDS 45.0%
TGTATTAACACATGCCACCC+CGG - chr7_3:44100357-44100376 None:intergenic 45.0%
TCTATATGTATCCTCCCCTG+TGG + chr7_3:44100793-44100812 Msa1105540:three_prime_UTR 45.0%
CACACATACACAATCGAGAG+GGG - chr7_3:44100828-44100847 None:intergenic 45.0%
GCACACATACACAATCGAGA+GGG - chr7_3:44100829-44100848 None:intergenic 45.0%
!!! TAATTATAATTTTAATGAAA+TGG - chr7_3:44096798-44096817 None:intergenic 5.0%
!! TTGATATAAAATTAATTAAA+AGG - chr7_3:44099427-44099446 None:intergenic 5.0%
TCCTGAGGAGATTGCTTCCA+TGG + chr7_3:44095884-44095903 Msa1105540:CDS 50.0%
ACCATGGAAGCAATCTCCTC+AGG - chr7_3:44095888-44095907 None:intergenic 50.0%
!!! TTGACGGTGCCGTTTTTCCA+TGG - chr7_3:44096861-44096880 None:intergenic 50.0%
CACATGTCTTGGCGGAGATT+TGG + chr7_3:44097463-44097482 Msa1105540:intron 50.0%
CTGTCCTACATCACCCAACA+AGG + chr7_3:44098046-44098065 Msa1105540:intron 50.0%
TCCTACATCACCCAACAAGG+TGG + chr7_3:44098049-44098068 Msa1105540:intron 50.0%
CCTACATCACCCAACAAGGT+GGG + chr7_3:44098050-44098069 Msa1105540:intron 50.0%
CTACATCACCCAACAAGGTG+GGG + chr7_3:44098051-44098070 Msa1105540:intron 50.0%
!!! ATCTAGTTTTGGGGTGTCGG+TGG - chr7_3:44098277-44098296 None:intergenic 50.0%
TGTTGAGGGATGAGACTGGT+GGG - chr7_3:44098425-44098444 None:intergenic 50.0%
TGTCTGTTGAGGGATGAGAC+TGG - chr7_3:44098429-44098448 None:intergenic 50.0%
TACGCAATCACACGGAGAGA+AGG + chr7_3:44098709-44098728 Msa1105540:CDS 50.0%
GTGTGGGACTGGAAATCCAA+TGG + chr7_3:44098749-44098768 Msa1105540:CDS 50.0%
AATCAGCCAACCGCTTTCTG+CGG - chr7_3:44098809-44098828 None:intergenic 50.0%
TTTGGTCGCAATGCTATCGG+TGG + chr7_3:44098840-44098859 Msa1105540:CDS 50.0%
CAACGTAGTACCTTCCATCG+CGG - chr7_3:44098866-44098885 None:intergenic 50.0%
GTCACGCCGTCATTCAAGAT+AGG + chr7_3:44098937-44098956 Msa1105540:CDS 50.0%
ATTGGCACCACGACCATCTA+TGG - chr7_3:44099036-44099055 None:intergenic 50.0%
! TCCCAGTCGGCTTACAATCA+TGG - chr7_3:44099130-44099149 None:intergenic 50.0%
TAAGCCGACTGGGAATGCTA+TGG + chr7_3:44099136-44099155 Msa1105540:CDS 50.0%
CGAACCATAGCATTCCCAGT+CGG - chr7_3:44099143-44099162 None:intergenic 50.0%
CCTCCATCCAAAATGGGAAG+GGG - chr7_3:44099171-44099190 None:intergenic 50.0%
GTCCTCCATCCAAAATGGGA+AGG - chr7_3:44099173-44099192 None:intergenic 50.0%
! AGGACAATGGCTGATGGTGA+TGG + chr7_3:44099188-44099207 Msa1105540:CDS 50.0%
! ATTGGAAACGGTAATGGCGG+TGG - chr7_3:44099303-44099322 None:intergenic 50.0%
GGATAAGACCCTCCCCAAAA+TGG - chr7_3:44099577-44099596 None:intergenic 50.0%
! TTGGGGAGGGTCTTATCCAA+AGG + chr7_3:44099579-44099598 Msa1105540:CDS 50.0%
TAGACACGGGTATTTCCACG+TGG + chr7_3:44099914-44099933 Msa1105540:CDS 50.0%
GATGTGGACAGGTGACAAAG+AGG + chr7_3:44100140-44100159 Msa1105540:intron 50.0%
GTGACAAAGAGGGTGGATAC+AGG + chr7_3:44100151-44100170 Msa1105540:CDS 50.0%
GGTTGGAATTGGAGGTCTGA+GGG + chr7_3:44100190-44100209 Msa1105540:CDS 50.0%
GGAACTTTAACTGCAGGTGC+TGG + chr7_3:44100316-44100335 Msa1105540:CDS 50.0%
GTTATTAAATGTCGCCGGGG+TGG + chr7_3:44100340-44100359 Msa1105540:CDS 50.0%
! AGGGGTACACTATTCCACAG+GGG - chr7_3:44100810-44100829 None:intergenic 50.0%
! GAGGGGTACACTATTCCACA+GGG - chr7_3:44100811-44100830 None:intergenic 50.0%
! AGAGGGGTACACTATTCCAC+AGG - chr7_3:44100812-44100831 None:intergenic 50.0%
GGCACACATACACAATCGAG+AGG - chr7_3:44100830-44100849 None:intergenic 50.0%
GGAGCGTACACGTGGCATAA+AGG + chr7_3:44095596-44095615 Msa1105540:intron 55.0%
TCAGCACAGTCTGACCCACT+TGG + chr7_3:44096272-44096291 Msa1105540:intron 55.0%
CCCACCTTGTTGGGTGATGT+AGG - chr7_3:44098053-44098072 None:intergenic 55.0%
GTGGCTTACCCCACCTTGTT+GGG - chr7_3:44098062-44098081 None:intergenic 55.0%
TGTGGCTTACCCCACCTTGT+TGG - chr7_3:44098063-44098082 None:intergenic 55.0%
CTGTTGAGGGATGAGACTGG+TGG - chr7_3:44098426-44098445 None:intergenic 55.0%
TTTGGTACCGCCGCAGAAAG+CGG + chr7_3:44098796-44098815 Msa1105540:CDS 55.0%
! CGGTTGGCTGATTGTGCCAT+TGG + chr7_3:44098816-44098835 Msa1105540:CDS 55.0%
AGTGCCAGGTCTTGGGTTCA+CGG - chr7_3:44098913-44098932 None:intergenic 55.0%
! CGTAGCTCCCCTTCCCATTT+TGG + chr7_3:44099161-44099180 Msa1105540:CDS 55.0%
! GCTCCCCTTCCCATTTTGGA+TGG + chr7_3:44099165-44099184 Msa1105540:CDS 55.0%
! CCCCTTCCCATTTTGGATGG+AGG + chr7_3:44099168-44099187 Msa1105540:CDS 55.0%
GGATGGAGGACAATGGCTGA+TGG + chr7_3:44099182-44099201 Msa1105540:CDS 55.0%
CTACTTCACCCACCACAACG+AGG + chr7_3:44099325-44099344 Msa1105540:CDS 55.0%
!! AGAGGTCCCTCTGAGACACT+AGG - chr7_3:44099802-44099821 None:intergenic 55.0%
! GGGCAAGGTATCTGTTGCCT+TGG - chr7_3:44100007-44100026 None:intergenic 55.0%
!! CAAAAGGGTTCTGAGGGGCA+AGG - chr7_3:44100022-44100041 None:intergenic 55.0%
TGGACAGGTGACAAAGAGGG+TGG + chr7_3:44100144-44100163 Msa1105540:intron 55.0%
AAGAGGGTGGATACAGGGTC+CGG + chr7_3:44100157-44100176 Msa1105540:CDS 55.0%
TGGATACAGGGTCCGGAGTA+TGG + chr7_3:44100164-44100183 Msa1105540:CDS 55.0%
TACAGGGTCCGGAGTATGGA+AGG + chr7_3:44100168-44100187 Msa1105540:CDS 55.0%
ACAGGGTCCGGAGTATGGAA+GGG + chr7_3:44100169-44100188 Msa1105540:CDS 55.0%
GGGTTGGAATTGGAGGTCTG+AGG + chr7_3:44100189-44100208 Msa1105540:CDS 55.0%
TCCATCAGGAAGAGGAGCTG+CGG + chr7_3:44100243-44100262 Msa1105540:CDS 55.0%
GGTACACTATTCCACAGGGG+AGG - chr7_3:44100807-44100826 None:intergenic 55.0%
! GACTGGTGGGTCGGTCATGT+GGG - chr7_3:44098412-44098431 None:intergenic 60.0%
! AGACTGGTGGGTCGGTCATG+TGG - chr7_3:44098413-44098432 None:intergenic 60.0%
! GAGGGATGAGACTGGTGGGT+CGG - chr7_3:44098421-44098440 None:intergenic 60.0%
CAGCGCCAGCAGTCATCCAT+TGG - chr7_3:44098768-44098787 None:intergenic 60.0%
GCTGGCGCTGTGACAAGCTT+TGG + chr7_3:44098778-44098797 Msa1105540:CDS 60.0%
AATGCTATCGGTGGCCGCGA+TGG + chr7_3:44098849-44098868 Msa1105540:CDS 60.0%
TCACGGGGTCGTCGTCTCTT+GGG - chr7_3:44098896-44098915 None:intergenic 60.0%
TTCACGGGGTCGTCGTCTCT+TGG - chr7_3:44098897-44098916 None:intergenic 60.0%
TGCCAGGTCTTGGGTTCACG+GGG - chr7_3:44098911-44098930 None:intergenic 60.0%
GTGCCAGGTCTTGGGTTCAC+GGG - chr7_3:44098912-44098931 None:intergenic 60.0%
!! GACGGAGAGTGCCAGGTCTT+GGG - chr7_3:44098920-44098939 None:intergenic 60.0%
!! TGACGGAGAGTGCCAGGTCT+TGG - chr7_3:44098921-44098940 None:intergenic 60.0%
GGTCCGGAGTATGGAAGGGT+TGG + chr7_3:44100173-44100192 Msa1105540:CDS 60.0%
GTACCGCCGCAGAAAGCGGT+TGG + chr7_3:44098800-44098819 Msa1105540:CDS 65.0%
CAGCCAACCGCTTTCTGCGG+CGG - chr7_3:44098806-44098825 None:intergenic 65.0%
CTATCGGTGGCCGCGATGGA+AGG + chr7_3:44098853-44098872 Msa1105540:CDS 65.0%
GACCCCGTGAACCCAAGACC+TGG + chr7_3:44098906-44098925 Msa1105540:CDS 65.0%
GCCGCAGCTCCTCTTCCTGA+TGG - chr7_3:44100247-44100266 None:intergenic 65.0%
!! ACGGCGTGACGGAGAGTGCC+AGG - chr7_3:44098927-44098946 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 44095105 44100932 44095105 ID=Msa1105540;Name=Msa1105540
chr7_3 mRNA 44095105 44100932 44095105 ID=Msa1105540-mRNA-1;Parent=Msa1105540;Name=Msa1105540-mRNA-1;_AED=0.12;_eAED=0.12;_QI=86|1|1|1|1|1|7|560|444
chr7_3 exon 44095105 44095285 44095105 ID=Msa1105540-mRNA-1:exon:9105;Parent=Msa1105540-mRNA-1
chr7_3 exon 44095444 44095506 44095444 ID=Msa1105540-mRNA-1:exon:9106;Parent=Msa1105540-mRNA-1
chr7_3 exon 44095845 44095913 44095845 ID=Msa1105540-mRNA-1:exon:9107;Parent=Msa1105540-mRNA-1
chr7_3 exon 44098704 44099346 44098704 ID=Msa1105540-mRNA-1:exon:9108;Parent=Msa1105540-mRNA-1
chr7_3 exon 44099506 44099609 44099506 ID=Msa1105540-mRNA-1:exon:9109;Parent=Msa1105540-mRNA-1
chr7_3 exon 44099911 44100049 44099911 ID=Msa1105540-mRNA-1:exon:9110;Parent=Msa1105540-mRNA-1
chr7_3 exon 44100151 44100932 44100151 ID=Msa1105540-mRNA-1:exon:9111;Parent=Msa1105540-mRNA-1
chr7_3 five_prime_UTR 44095105 44095190 44095105 ID=Msa1105540-mRNA-1:five_prime_utr;Parent=Msa1105540-mRNA-1
chr7_3 CDS 44095191 44095285 44095191 ID=Msa1105540-mRNA-1:cds;Parent=Msa1105540-mRNA-1
chr7_3 CDS 44095444 44095506 44095444 ID=Msa1105540-mRNA-1:cds;Parent=Msa1105540-mRNA-1
chr7_3 CDS 44095845 44095913 44095845 ID=Msa1105540-mRNA-1:cds;Parent=Msa1105540-mRNA-1
chr7_3 CDS 44098704 44099346 44098704 ID=Msa1105540-mRNA-1:cds;Parent=Msa1105540-mRNA-1
chr7_3 CDS 44099506 44099609 44099506 ID=Msa1105540-mRNA-1:cds;Parent=Msa1105540-mRNA-1
chr7_3 CDS 44099911 44100049 44099911 ID=Msa1105540-mRNA-1:cds;Parent=Msa1105540-mRNA-1
chr7_3 CDS 44100151 44100372 44100151 ID=Msa1105540-mRNA-1:cds;Parent=Msa1105540-mRNA-1
chr7_3 three_prime_UTR 44100373 44100932 44100373 ID=Msa1105540-mRNA-1:three_prime_utr;Parent=Msa1105540-mRNA-1
Gene Sequence

>Msa1105540

ATGGAGTTACGGTTTTCATCACAGTTCGTTTTCACCATTCTCGCTATCACGCTTCTTTTTGCTTTCGCCAATGCTATTGATTCTAATGAATCACGTGTTGTGAATGGAGAAGAAAAGTTGAAGATGCAGAGCTTGAATAATTCATCAATGGCGGAAAGCTTAAGTAATGGTGCTATCAACGAGCATGCAGTTGATAATCCTGAGGAGATTGCTTCCATGGTTGATACGACTATACGCAATCACACGGAGAGAAGGAGTTTGAGTTTTTTCTCGTGTGGGACTGGAAATCCAATGGATGACTGCTGGCGCTGTGACAAGCTTTGGTACCGCCGCAGAAAGCGGTTGGCTGATTGTGCCATTGGTTTTGGTCGCAATGCTATCGGTGGCCGCGATGGAAGGTACTACGTTGTGAATAACCCAAGAGACGACGACCCCGTGAACCCAAGACCTGGCACTCTCCGTCACGCCGTCATTCAAGATAGGCCATTGTGGATTGTGTTCAAGAGAGACATGGTGATCACCCTGAAGCAAGAATTGATCATGAACAGTTTCAAGACCATAGATGGTCGTGGTGCCAATGTTCATATTGCCTTTGGAGCATGCATTACTATTCAATTTATCACCAATGTCATCATCCATGGTGTCCATATCCATGATTGTAAGCCGACTGGGAATGCTATGGTTCGTAGCTCCCCTTCCCATTTTGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATCTTTGGTTCCAGTCATATTTGGATTGATCACAACTCTCTGTCTAATTGCGCTGATGGTCTTGTTGATGCTATTATGGGATCCACCGCCATTACCGTTTCCAATAACTACTTCACCCACCACAACGAGGTTATGCTATTGGGTCACAGTGACTCATATGTACGTGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGGATGCCAAGATGTAGACACGGGTATTTCCACGTGGTAAACAATGACTATACACACTGGGTGATGTATGCTATTGGAGGCAGTGCTGAACCCACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTCAGAACCCTTTTGCCAAAGAGGTGACAAAGAGGGTGGATACAGGGTCCGGAGTATGGAAGGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTAAATGGAGCTTTTTTCACTCCATCAGGAAGAGGAGCTGCGGCAAGCTATGCTAGAGCCTCAAGTTTAGGGGCCAAATCATCTTCATTAGTCGGAACTTTAACTGCAGGTGCTGGTGTTATTAAATGTCGCCGGGGTGGCATGTGTTAA

Protein sequence

>Msa1105540

MELRFSSQFVFTILAITLLFAFANAIDSNESRVVNGEEKLKMQSLNNSSMAESLSNGAINEHAVDNPEEIASMVDTTIRNHTERRSLSFFSCGTGNPMDDCWRCDKLWYRRRKRLADCAIGFGRNAIGGRDGRYYVVNNPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAEPTINSQGNRYLAPQNPFAKEVTKRVDTGSGVWKGWNWRSEGDLLLNGAFFTPSGRGAAASYARASSLGAKSSSLVGTLTAGAGVIKCRRGGMC*