AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006840 MtrunA17_Chr1g0149101 94.279 874 39 5 1 870 1 867 0.0 1626
Msa0006840 MtrunA17_Chr5g0394661 48.404 188 94 3 478 664 464 649 5.65e-50 189
Msa0006840 MtrunA17_Chr8g0390351 41.040 173 90 6 474 640 52 218 2.80e-29 124
Msa0006840 MtrunA17_Chr6g0485811 47.727 132 60 3 501 629 128 253 9.69e-29 122
Msa0006840 MtrunA17_Chr3g0139951 37.634 186 107 5 444 626 90 269 1.08e-28 119
Msa0006840 MtrunA17_Chr1g0158111 82.258 62 11 0 427 488 5 66 1.07e-27 107
Msa0006840 MtrunA17_Chr1g0205031 37.008 127 78 1 503 629 407 531 5.19e-24 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006840 AT3G22780.1 33.889 540 233 23 324 848 263 693 7.95e-61 219
Msa0006840 AT3G22760.2 38.824 340 154 11 303 641 56 342 1.97e-53 194
Msa0006840 AT3G22760.1 38.824 340 154 11 303 641 179 465 1.01e-52 195
Msa0006840 AT4G14770.2 38.312 308 139 8 322 629 225 481 4.92e-50 187
Msa0006840 AT4G14770.2 28.190 337 178 15 568 848 324 652 1.50e-14 78.2
Msa0006840 AT4G14770.3 38.312 308 139 8 322 629 226 482 4.94e-50 188
Msa0006840 AT4G14770.3 27.515 338 179 14 568 848 325 653 1.61e-14 78.2
Msa0006840 AT4G14770.1 38.312 308 139 8 322 629 245 501 5.51e-50 188
Msa0006840 AT4G14770.1 28.190 337 178 15 568 848 344 672 1.64e-14 78.2
Msa0006840 AT3G04850.1 33.739 329 152 9 320 626 292 576 9.86e-46 175
Msa0006840 AT5G25790.3 43.750 160 77 7 483 638 74 224 2.49e-30 125
Msa0006840 AT5G25790.1 42.593 162 80 6 483 638 74 228 3.73e-30 125
Msa0006840 AT5G25790.2 40.437 183 90 7 462 638 59 228 4.29e-30 125
Msa0006840 AT2G20110.3 46.099 141 67 4 501 637 119 254 5.20e-30 126
Msa0006840 AT2G20110.1 46.099 141 67 4 501 637 119 254 6.53e-30 126
Msa0006840 AT2G20110.2 46.099 141 67 4 501 637 119 254 8.97e-30 125
Msa0006840 AT4G29000.1 44.056 143 69 5 501 638 132 268 5.42e-28 120
Msa0006840 AT3G16160.1 46.774 124 60 3 501 624 66 183 9.97e-25 107

Find 236 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTAGATTGTTCCATTTC+TGG 0.116107 1_1:-9832721 None:intergenic
TCCCTCTTCTTCAATCTATT+TGG 0.177641 1_1:+9837197 Msa0006840:three_prime_UTR
CGTAGACGCTGCCTACAATT+TGG 0.186201 1_1:+9834151 Msa0006840:CDS
TTGCATTATTATTGAGTTAT+AGG 0.196885 1_1:+9831107 Msa0006840:five_prime_UTR
TGCGGTATTCGCCAGTTATC+TGG 0.216353 1_1:+9836677 Msa0006840:CDS
GAAGCCTTGACAGGCTTTAT+TGG 0.243588 1_1:-9832270 None:intergenic
ATGTTTCTGTATCTGATAAA+TGG 0.260838 1_1:-9832486 None:intergenic
GTGGAGGAGAAACTCTCTTT+TGG 0.268257 1_1:-9836859 None:intergenic
AACACGGCCATCCCTCTTAA+AGG 0.270855 1_1:-9837451 None:intergenic
AGCATCCGTCGATGAATATT+TGG 0.273659 1_1:+9832663 Msa0006840:CDS
CTCTTAATCTTAGAAGCTTC+TGG 0.276323 1_1:-9831196 None:intergenic
TGCATTATTATTGAGTTATA+GGG 0.280339 1_1:+9831108 Msa0006840:five_prime_UTR
GAGGGATGGCCGTGTTAATT+AGG 0.288571 1_1:+9837458 Msa0006840:three_prime_UTR
CTATTTGGTGTAGAATGTTT+TGG 0.292638 1_1:+9837151 Msa0006840:three_prime_UTR
TGGTAACAGAGTAGAATTTC+AGG 0.294634 1_1:+9834932 Msa0006840:CDS
ATGCAAACTTATAGAAGATT+TGG 0.296279 1_1:-9834371 None:intergenic
GATTCATACAATAAGTAATC+TGG 0.298960 1_1:-9837262 None:intergenic
GAAGCTGCTTCCGTTGTTCT+TGG 0.299878 1_1:+9834175 Msa0006840:CDS
CATTGCAACAATGGTGTTAC+AGG 0.307892 1_1:-9836348 None:intergenic
GTAGACGCTGCCTACAATTT+GGG 0.311899 1_1:+9834152 Msa0006840:CDS
CTCTTATCAGGTGCATTTGC+CGG 0.312680 1_1:-9834550 None:intergenic
TTCTCCCCTTCAATTATTGC+AGG 0.313108 1_1:-9832895 None:intergenic
TTCTATAAGTTTGCATATAG+TGG 0.322912 1_1:+9834378 Msa0006840:CDS
CAGTAGATTGTTCCATTTCT+GGG 0.324248 1_1:-9832720 None:intergenic
CATGCGACACATGGGTTTCT+CGG 0.326256 1_1:+9832294 Msa0006840:CDS
TTTGTTGGAGGAATCTAATA+TGG 0.332408 1_1:+9832840 Msa0006840:CDS
ATCCTCAACTCCGTCCAATA+TGG 0.338930 1_1:+9834414 Msa0006840:CDS
TGATGTTCCACTGAATAATA+TGG 0.341118 1_1:+9835034 Msa0006840:CDS
TTGCAATGGCAATGAGGATT+CGG 0.342240 1_1:+9837003 Msa0006840:CDS
ATGCTGGAGGACTGCAGCTT+TGG 0.349282 1_1:-9832645 None:intergenic
CTTCAATCTATTTGGCAAAC+AGG 0.353004 1_1:+9837205 Msa0006840:three_prime_UTR
CTGGCGAATACCGCATCTAT+TGG 0.354125 1_1:-9836669 None:intergenic
GGGCGTACCCTCCTCTTATC+AGG 0.364892 1_1:-9834562 None:intergenic
TGCAGTTACTGTGATTGTTT+TGG 0.366597 1_1:+9834867 Msa0006840:intron
AAGTTATATTAAAATTTGAT+AGG 0.367397 1_1:+9832779 Msa0006840:CDS
TGCTGGAGGACTGCAGCTTT+GGG 0.368500 1_1:-9832644 None:intergenic
AGCAAATGCTTGTGGATTAC+GGG 0.369212 1_1:-9834988 None:intergenic
AACGATGTATACTTGAACTT+GGG 0.375614 1_1:-9831278 None:intergenic
AGTGTTGACAAATCTCAAAA+AGG 0.377839 1_1:-9832241 None:intergenic
AAAAGATTGATCATCCATAT+TGG 0.378531 1_1:-9834428 None:intergenic
AGCTGCACATGGTACAATCT+TGG 0.387960 1_1:-9835012 None:intergenic
ATTTGCTTTCACAGACTTGA+TGG 0.391070 1_1:-9836828 None:intergenic
GAGCAAATGCTTGTGGATTA+CGG 0.393901 1_1:-9834989 None:intergenic
GTTTATAACAGTTGCTCAAA+AGG 0.394683 1_1:+9832594 Msa0006840:CDS
CTACTGAAGCATCAGTTTCA+TGG 0.398320 1_1:-9834471 None:intergenic
ACAGGTGAGAGGTGATTTAC+TGG 0.400544 1_1:-9836330 None:intergenic
CGAGACTCCATTTGAGCATA+TGG 0.410622 1_1:-9837427 None:intergenic
TGCAATGGCAATGAGGATTC+GGG 0.411133 1_1:+9837004 Msa0006840:CDS
AAGTTAGCGCTTGGGGTAAT+CGG 0.415030 1_1:-9836728 None:intergenic
GACAGAAAATTGTGACAATC+AGG 0.415519 1_1:+9836292 Msa0006840:CDS
CAACCCAATGCCTGGTGGCT+TGG 0.420396 1_1:-9834266 None:intergenic
GCGGTATTCGCCAGTTATCT+GGG 0.421949 1_1:+9836678 Msa0006840:CDS
GAGATTATCAGATGGTATAC+AGG 0.422125 1_1:+9834345 Msa0006840:CDS
AAATATTCATCGACGGATGC+TGG 0.424324 1_1:-9832661 None:intergenic
AGTTCTTCTGCTATGTTACT+AGG 0.425346 1_1:-9832811 None:intergenic
CATCATCTAAGTTAGCGCTT+GGG 0.426755 1_1:-9836736 None:intergenic
TGTTCCATTTCTGGGTTGAC+TGG 0.428222 1_1:-9832712 None:intergenic
TGATCCTATCCAGGCTGTTA+AGG 0.432469 1_1:+9833204 Msa0006840:CDS
ACTTTGCACCCTGCTTGCCT+TGG 0.435412 1_1:-9836496 None:intergenic
CGGATTGGATCAAGCTCCTC+AGG 0.435804 1_1:+9836896 Msa0006840:CDS
GCTAACGTTGGATGCTCGAC+TGG 0.440058 1_1:+9835328 Msa0006840:CDS
TGCCCTCAATGTGTGTATAA+TGG 0.440939 1_1:+9837068 Msa0006840:three_prime_UTR
GTATCCAGTCAACCCAGAAA+TGG 0.441055 1_1:+9832708 Msa0006840:CDS
TGTTTCTGTATCTGATAAAT+GGG 0.441713 1_1:-9832485 None:intergenic
GAAGCTTCCTTCAATACATC+AGG 0.449228 1_1:-9836800 None:intergenic
CGAGTATTGTGTTTCACGGT+GGG 0.450483 1_1:-9832364 None:intergenic
GATGGATGTATGAATGTCTT+TGG 0.451729 1_1:+9835361 Msa0006840:CDS
AGTTGAGGAGAGAGAAGAAG+AGG 0.456849 1_1:-9831227 None:intergenic
ATGGAGTCTCGTCCTTTAAG+AGG 0.457164 1_1:+9837439 Msa0006840:three_prime_UTR
TGAAACACCTGATGTATTGA+AGG 0.458665 1_1:+9836793 Msa0006840:CDS
TTCTTACAGTTGCACGTCTT+AGG 0.458861 1_1:-9834749 None:intergenic
TTTGTATGTATCAGGCTTGA+AGG 0.461411 1_1:+9832460 Msa0006840:intron
GAAAATCCTGCAATAATTGA+AGG 0.462072 1_1:+9832889 Msa0006840:CDS
TCATCATCTAAGTTAGCGCT+TGG 0.462532 1_1:-9836737 None:intergenic
TTTCCAAGCCACCAGGCATT+GGG 0.462604 1_1:+9834263 Msa0006840:CDS
GTTTCCAAGCCACCAGGCAT+TGG 0.462633 1_1:+9834262 Msa0006840:CDS
TCGATGGATTCTGTCAAGAT+AGG 0.463592 1_1:-9834520 None:intergenic
TACGGATGCCATGATACTTT+AGG 0.463804 1_1:-9834132 None:intergenic
TTTCAAATTCCTTAACAGCC+TGG 0.465100 1_1:-9833213 None:intergenic
TTGATCCAATCCGAAGTAGA+TGG 0.467929 1_1:-9836886 None:intergenic
GCTGCACATGGTACAATCTT+GGG 0.476181 1_1:-9835011 None:intergenic
ATAATGGTTGGCATCTTGTC+TGG 0.477239 1_1:+9837084 Msa0006840:three_prime_UTR
TTTCCGAGTATTGTGTTTCA+CGG 0.478137 1_1:-9832368 None:intergenic
CCTAGTTGTGCTTCAACTAC+AGG 0.478757 1_1:+9834319 Msa0006840:CDS
AAGCAGCTTCCCCAAATTGT+AGG 0.478821 1_1:-9834162 None:intergenic
TGCTGTTCCATATGCTCAAA+TGG 0.479425 1_1:+9837420 Msa0006840:three_prime_UTR
AATTTCAAGCTTCAGTGTGC+AGG 0.480226 1_1:+9833136 Msa0006840:intron
GGGGTCAACGGCGGGAATGA+AGG 0.482884 1_1:-9836959 None:intergenic
CAGCGCAAGGGGTCAACGGC+GGG 0.483041 1_1:-9836967 None:intergenic
CTAATATGGTTCATCAAGAA+AGG 0.485151 1_1:+9832854 Msa0006840:CDS
GTTGAATTCCTCAGCATCTG+TGG 0.485615 1_1:-9834584 None:intergenic
ATAAACTTAGGCTCGAGTTC+AGG 0.487680 1_1:+9832949 Msa0006840:CDS
AAACGATGTATACTTGAACT+TGG 0.487717 1_1:-9831279 None:intergenic
AGAATCCATCGACCTATATC+CGG 0.490265 1_1:+9834531 Msa0006840:CDS
TTGCCATGGTTCACTTCCCC+AGG 0.490609 1_1:+9832996 Msa0006840:CDS
TTAACAGCCTGGATAGGATC+AGG 0.491802 1_1:-9833202 None:intergenic
CAACATTGTTGAAGAAGGGT+TGG 0.492695 1_1:+9836251 Msa0006840:CDS
TTTGTCCAGCCAAGGCAAGC+AGG 0.495977 1_1:+9836487 Msa0006840:intron
GAGAGCAACATTGTTGAAGA+AGG 0.497547 1_1:+9836246 Msa0006840:CDS
TCTCAAGAGCACATAAACTT+AGG 0.497807 1_1:+9832937 Msa0006840:CDS
CGGCAAATGCACCTGATAAG+AGG 0.504086 1_1:+9834551 Msa0006840:CDS
AAAGAGGTTGCAATTGCAAA+AGG 0.504487 1_1:+9835176 Msa0006840:CDS
AGAGGGAGGTGTCACAGAAA+TGG 0.508989 1_1:-9837181 None:intergenic
AACAATCTACTGATGCGGTT+GGG 0.512016 1_1:+9832731 Msa0006840:CDS
ATTGATGCCTGATCCTATCC+AGG 0.512947 1_1:+9833195 Msa0006840:CDS
ATTCATACAATAAGTAATCT+GGG 0.514405 1_1:-9837261 None:intergenic
CAAATTGTAGGCAGCGTCTA+CGG 0.518260 1_1:-9834150 None:intergenic
ATCATCTAAGTTAGCGCTTG+GGG 0.519646 1_1:-9836735 None:intergenic
GAACAATCTACTGATGCGGT+TGG 0.524575 1_1:+9832730 Msa0006840:CDS
TACCGCATCTATTGGAGAGT+TGG 0.524893 1_1:-9836661 None:intergenic
TGAATATTTGGCTGATCCCG+TGG 0.525204 1_1:+9832675 Msa0006840:CDS
TTGTCCAGCCAAGGCAAGCA+GGG 0.526069 1_1:+9836488 Msa0006840:intron
TTTAAATGCAACCCAATGCC+TGG 0.526474 1_1:-9834274 None:intergenic
GTCTCGTCCTTTAAGAGGGA+TGG 0.527022 1_1:+9837444 Msa0006840:three_prime_UTR
GGGTATTCGCATCATTCTTG+AGG 0.527259 1_1:-9832624 None:intergenic
TCCTCAGGTGGCTTGAAAAG+TGG 0.529192 1_1:+9836911 Msa0006840:CDS
ATATTAGATTCCTCCAACAA+AGG 0.530012 1_1:-9832838 None:intergenic
TGCCAAATAGATTGAAGAAG+AGG 0.530591 1_1:-9837199 None:intergenic
CAGAGCCATCTACTTCGGAT+TGG 0.530846 1_1:+9836881 Msa0006840:CDS
CATCTATTGGAGAGTTGGTA+TGG 0.533401 1_1:-9836656 None:intergenic
GCTGGAATCTTCTGTGGCGA+CGG 0.536040 1_1:+9834891 Msa0006840:CDS
TTGAATTCCTCAGCATCTGT+GGG 0.538648 1_1:-9834583 None:intergenic
TACTCAGAGCATTGCAACAA+TGG 0.538876 1_1:-9836357 None:intergenic
CAGGCTAGCCTAAAGTATCA+TGG 0.540060 1_1:+9834124 Msa0006840:CDS
CAACCATTATACACACATTG+AGG 0.540740 1_1:-9837071 None:intergenic
TTTGCTTTCACAGACTTGAT+GGG 0.542250 1_1:-9836827 None:intergenic
CCACCGTGAAACACAATACT+CGG 0.542340 1_1:+9832365 Msa0006840:CDS
TTACCTCAGAACCATCTTGT+GGG 0.543543 1_1:-9833282 None:intergenic
GTTATAAACACCTCTGGCAG+TGG 0.544020 1_1:-9832580 None:intergenic
TCAACCATCCTAGCACCTCC+AGG 0.545986 1_1:+9834602 Msa0006840:CDS
GTCGCATGAGAAGCCTTGAC+AGG 0.546192 1_1:-9832279 None:intergenic
AATTCCTTAACAGCCTGGAT+AGG 0.546382 1_1:-9833208 None:intergenic
GTTGCACGTCTTAGGTCCAT+TGG 0.547167 1_1:-9834741 None:intergenic
ACATGCATCTAGCAATGAAA+GGG 0.547172 1_1:+9836224 Msa0006840:CDS
GTGACAGTTTCCAAGCCACC+AGG 0.548258 1_1:+9834256 Msa0006840:CDS
CTCCACAGAGCCATCTACTT+CGG 0.551057 1_1:+9836876 Msa0006840:CDS
AATGTCTTTGGCAAGAGAGA+AGG 0.551265 1_1:+9835373 Msa0006840:CDS
AAGGCTTCTCATGCGACACA+TGG 0.551643 1_1:+9832285 Msa0006840:CDS
ATTCTCTGAATTTACTTGTG+AGG 0.552178 1_1:-9833257 None:intergenic
ATCCATATTGGACGGAGTTG+AGG 0.552766 1_1:-9834416 None:intergenic
AAGTAATACTACACATTGGA+AGG 0.552794 1_1:-9837314 None:intergenic
AAAATCCTGCAATAATTGAA+GGG 0.554170 1_1:+9832890 Msa0006840:CDS
TTAAAATTTGATAGGAGTGA+CGG 0.554336 1_1:+9832787 Msa0006840:CDS
CAGGTGCATTTGCCGGATAT+AGG 0.554569 1_1:-9834543 None:intergenic
TTTGATAAACAATATTGCCA+TGG 0.557022 1_1:+9832982 Msa0006840:CDS
CAGGTGGCTTGAAAAGTGGC+AGG 0.557391 1_1:+9836915 Msa0006840:CDS
AACCATTATACACACATTGA+GGG 0.557674 1_1:-9837070 None:intergenic
ATAATTGTTACAGTCAATGC+AGG 0.560961 1_1:+9834105 Msa0006840:intron
CCTGTAGTTGAAGCACAACT+AGG 0.562369 1_1:-9834319 None:intergenic
ACGATGTATACTTGAACTTG+GGG 0.563805 1_1:-9831277 None:intergenic
ATTTGTCAAAAGGCTAACGT+TGG 0.564831 1_1:+9835316 Msa0006840:intron
CGGTATTCGCCAGTTATCTG+GGG 0.571016 1_1:+9836679 Msa0006840:CDS
TTTGGTGCTGGAATCTTCTG+TGG 0.572134 1_1:+9834885 Msa0006840:CDS
GGCGACGGTTGTGCTTGCGA+AGG 0.572382 1_1:+9834906 Msa0006840:CDS
AACGTAGGAGACAACAGTCT+TGG 0.572639 1_1:+9832517 Msa0006840:CDS
GCCAAATAGATTGAAGAAGA+GGG 0.573771 1_1:-9837198 None:intergenic
ATCTTGGGAGCAAATGCTTG+TGG 0.574082 1_1:-9834996 None:intergenic
TGGATACATTTGATCGTCCA+CGG 0.575264 1_1:-9832692 None:intergenic
GAATCAGCGCAAGGGGTCAA+CGG 0.575782 1_1:-9836971 None:intergenic
AACATGCATCTAGCAATGAA+AGG 0.578315 1_1:+9836223 Msa0006840:CDS
AACATTCTACACCAAATAGC+GGG 0.579022 1_1:-9837147 None:intergenic
ATACAGAATCTGTTCTGAGA+AGG 0.581595 1_1:-9837371 None:intergenic
CCGAGTATTGTGTTTCACGG+TGG 0.583708 1_1:-9832365 None:intergenic
GATTCTAAAGTCCTTTGCAA+TGG 0.584197 1_1:+9836989 Msa0006840:CDS
GATGTATACTTGAACTTGGG+GGG 0.584743 1_1:-9831275 None:intergenic
AGAGCAACATTGTTGAAGAA+GGG 0.586625 1_1:+9836247 Msa0006840:CDS
GACTTTAGAATCAGCGCAAG+GGG 0.586639 1_1:-9836978 None:intergenic
AGATTATCAGATGGTATACA+GGG 0.586972 1_1:+9834346 Msa0006840:CDS
TCAGAGAATATCCCACAAGA+TGG 0.588289 1_1:+9833271 Msa0006840:CDS
TAGACGCTGCCTACAATTTG+GGG 0.588410 1_1:+9834153 Msa0006840:CDS
GATTGATCATCCATATTGGA+CGG 0.592859 1_1:-9834424 None:intergenic
TGGAGTCTCGTCCTTTAAGA+GGG 0.594631 1_1:+9837440 Msa0006840:three_prime_UTR
ATAGGATCAGGCATCAATTG+AGG 0.595329 1_1:-9833190 None:intergenic
TGACAACACCGGCATCAGCT+AGG 0.595994 1_1:+9835149 Msa0006840:CDS
TTCTGTCAAGATAGGAGACT+CGG 0.595997 1_1:-9834512 None:intergenic
ATTTGAAAATTGCAGTGAGA+TGG 0.600065 1_1:+9833228 Msa0006840:CDS
ATTACCTCAGAACCATCTTG+TGG 0.602494 1_1:-9833283 None:intergenic
GGACTTTAGAATCAGCGCAA+GGG 0.602915 1_1:-9836979 None:intergenic
CTCAATGTGTGTATAATGGT+TGG 0.603810 1_1:+9837072 Msa0006840:three_prime_UTR
GCAACTGTTATAAACACCTC+TGG 0.607058 1_1:-9832586 None:intergenic
GGATACATTTGATCGTCCAC+GGG 0.608080 1_1:-9832691 None:intergenic
TTCTCAGCAGCCACTGCCAG+AGG 0.609773 1_1:+9832570 Msa0006840:CDS
AACTTAGATGATGAATCAGA+TGG 0.610248 1_1:+9836746 Msa0006840:CDS
GGTTGTGCTTGCGAAGGCTG+TGG 0.610748 1_1:+9834912 Msa0006840:CDS
CGAAGTAGATGGCTCTGTGG+AGG 0.611110 1_1:-9836875 None:intergenic
GTCATCATCACTAACTGAGT+CGG 0.611386 1_1:+9832753 Msa0006840:CDS
TCTGTAGATGAAGAACGTGT+AGG 0.614632 1_1:-9836611 None:intergenic
AGTCCTTTGCAATGGCAATG+AGG 0.616936 1_1:+9836997 Msa0006840:CDS
GCATCAGCTAGGCACAAAAG+AGG 0.618145 1_1:+9835160 Msa0006840:CDS
GTCTCCAATAAAGCCTGTCA+AGG 0.618547 1_1:+9832266 Msa0006840:CDS
TATCCCACAAGATGGTTCTG+AGG 0.620911 1_1:+9833279 Msa0006840:CDS
CTATTGGAGAGTTGGTATGG+TGG 0.623132 1_1:-9836653 None:intergenic
ATTGGATCAAGCTCCTCAGG+TGG 0.623354 1_1:+9836899 Msa0006840:CDS
AATCCTCATTGCCATTGCAA+AGG 0.624686 1_1:-9837000 None:intergenic
CGCGGAGACTTGAATACGAG+AGG 0.625882 1_1:-9832330 None:intergenic
TATAAAGTAATACTACACAT+TGG 0.626331 1_1:-9837318 None:intergenic
AGGACTTTAGAATCAGCGCA+AGG 0.627509 1_1:-9836980 None:intergenic
TCAGCGCAAGGGGTCAACGG+CGG 0.628739 1_1:-9836968 None:intergenic
TCTTATACCATATTATTCAG+TGG 0.629452 1_1:-9835041 None:intergenic
CAAATGCACCTGATAAGAGG+AGG 0.630195 1_1:+9834554 Msa0006840:CDS
AAATCCTGCAATAATTGAAG+GGG 0.631389 1_1:+9832891 Msa0006840:CDS
CTTATTACTTCCAAGAACAA+CGG 0.633004 1_1:-9834185 None:intergenic
ATCAGCCAAATATTCATCGA+CGG 0.635829 1_1:-9832668 None:intergenic
ACAAGTACTGATGATGCCAA+TGG 0.639150 1_1:+9834725 Msa0006840:CDS
CTTCATCTACAGAAAATGAG+TGG 0.639866 1_1:+9836621 Msa0006840:CDS
CGATGTATACTTGAACTTGG+GGG 0.641260 1_1:-9831276 None:intergenic
GTGAAACACAATACTCGGAA+AGG 0.645194 1_1:+9832370 Msa0006840:CDS
AGGCTTCTCATGCGACACAT+GGG 0.646230 1_1:+9832286 Msa0006840:CDS
GAGTATTGTGTTTCACGGTG+GGG 0.646389 1_1:-9832363 None:intergenic
GGTACGCCCCACAGATGCTG+AGG 0.649944 1_1:+9834576 Msa0006840:CDS
TCGACTGGATGTCGATGTGA+TGG 0.651749 1_1:+9835343 Msa0006840:CDS
GAAACATCTCAAAGTAACGT+AGG 0.652192 1_1:+9832502 Msa0006840:CDS
GGTGGCGGCATTGAGAGTTG+AGG 0.654700 1_1:-9831242 None:intergenic
AGTGGAACATCAGCTGCACA+TGG 0.663360 1_1:-9835023 None:intergenic
AATGGAACAATCTACTGATG+CGG 0.671669 1_1:+9832726 Msa0006840:CDS
TACCAACTCTCCAATAGATG+CGG 0.673526 1_1:+9836659 Msa0006840:CDS
CGGTGGGGAGCACTGATACG+CGG 0.675366 1_1:-9832348 None:intergenic
AAATGCACCTGATAAGAGGA+GGG 0.675925 1_1:+9834555 Msa0006840:CDS
TATTCATCGACGGATGCTGG+AGG 0.678368 1_1:-9832658 None:intergenic
ATTTGCCGGATATAGGTCGA+TGG 0.681858 1_1:-9834536 None:intergenic
AAACATTCTACACCAAATAG+CGG 0.685950 1_1:-9837148 None:intergenic
GGTATTCGCCAGTTATCTGG+GGG 0.691155 1_1:+9836680 Msa0006840:CDS
ACAGGTGTGAGATTATCAGA+TGG 0.691185 1_1:+9834337 Msa0006840:CDS
TCTAAGTAGCCTAATTAACA+CGG 0.691450 1_1:-9837467 None:intergenic
AAATGCAACCCAATGCCTGG+TGG 0.691964 1_1:-9834271 None:intergenic
GGAGACTTGAATACGAGAGG+TGG 0.694779 1_1:-9832327 None:intergenic
AGATGTGAATATGACAACAC+CGG 0.696103 1_1:+9835138 Msa0006840:CDS
TTTGCATATAGTGGAAAACG+TGG 0.696559 1_1:+9834387 Msa0006840:CDS
TGAATTCCTCAGCATCTGTG+GGG 0.698955 1_1:-9834582 None:intergenic
ATCCGAAGTAGATGGCTCTG+TGG 0.709057 1_1:-9836878 None:intergenic
ACAATGGTGTTACAGGTGAG+AGG 0.709448 1_1:-9836341 None:intergenic
AAATAGATTGAAGAAGAGGG+AGG 0.711927 1_1:-9837195 None:intergenic
GAATGTGCCAGACTGCTGCG+TGG 0.712112 1_1:-9836560 None:intergenic
TTACCTGGGGAAGTGAACCA+TGG 0.714453 1_1:-9832999 None:intergenic
GTAGTTGAAGCACAACTAGG+TGG 0.726466 1_1:-9834316 None:intergenic
GATTATCAGATGGTATACAG+GGG 0.764872 1_1:+9834347 Msa0006840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTATATTAAAATTTGAT+AGG + chr1_1:9832779-9832798 Msa0006840:CDS 10.0%
!!! TATTTTAAATATTTGTCAAA+AGG + chr1_1:9835306-9835325 Msa0006840:intron 10.0%
!!! AAATACAATAACATAATTTT+TGG + chr1_1:9835863-9835882 Msa0006840:intron 10.0%
!!! TTCTGTATATTTTATATTTT+TGG + chr1_1:9837386-9837405 Msa0006840:three_prime_UTR 10.0%
!!! TCTGTATATTTTATATTTTT+GGG + chr1_1:9837387-9837406 Msa0006840:three_prime_UTR 10.0%
!! TCAGAAAGAAAAAAAAAAAA+AGG + chr1_1:9831660-9831679 Msa0006840:intron 15.0%
!! TATATTTATAATGCTGATAT+AGG + chr1_1:9833045-9833064 Msa0006840:intron 15.0%
!! ATATTTATAATGCTGATATA+GGG + chr1_1:9833046-9833065 Msa0006840:intron 15.0%
!!! TAATTGATTTTTTTTCTTTC+AGG + chr1_1:9833302-9833321 Msa0006840:intron 15.0%
!!! CTTTTAGTTTTTTTAATCAT+TGG + chr1_1:9833488-9833507 Msa0006840:intron 15.0%
!!! AAATATCACCTAATTTTTTA+AGG - chr1_1:9835099-9835118 None:intergenic 15.0%
!!! TTTGTTTTAAAAGAAGTATT+AGG + chr1_1:9835730-9835749 Msa0006840:intron 15.0%
!!! GAAATTTTAGAAACTAAATT+GGG - chr1_1:9835824-9835843 None:intergenic 15.0%
!!! AGAAATTTTAGAAACTAAAT+TGG - chr1_1:9835825-9835844 None:intergenic 15.0%
!! AATTATGTTATTGTATTTCA+GGG - chr1_1:9835861-9835880 None:intergenic 15.0%
!! AAATTATGTTATTGTATTTC+AGG - chr1_1:9835862-9835881 None:intergenic 15.0%
!!! AGCAATTTTTCTTAAATTTT+AGG + chr1_1:9836017-9836036 Msa0006840:intron 15.0%
!!! GCAATTTTTCTTAAATTTTA+GGG + chr1_1:9836018-9836037 Msa0006840:intron 15.0%
!!! CAATTTTTCTTAAATTTTAG+GGG + chr1_1:9836019-9836038 Msa0006840:intron 15.0%
!! TTGCATTATTATTGAGTTAT+AGG + chr1_1:9831107-9831126 Msa0006840:five_prime_UTR 20.0%
!! TGCATTATTATTGAGTTATA+GGG + chr1_1:9831108-9831127 Msa0006840:five_prime_UTR 20.0%
!! GGGTAGTATAATTAATTAAT+CGG - chr1_1:9831309-9831328 None:intergenic 20.0%
!! TCTTTACGATTATTATGTTA+TGG + chr1_1:9831375-9831394 Msa0006840:intron 20.0%
!! TTTGCATCAAAATGAATATA+AGG + chr1_1:9831586-9831605 Msa0006840:intron 20.0%
!! TATAAGGTTATCAATTAGAT+CGG + chr1_1:9831602-9831621 Msa0006840:intron 20.0%
!! AAAAAAAAAGGTTGTCTATT+AGG + chr1_1:9831672-9831691 Msa0006840:intron 20.0%
!! TGGAATTATATTTGTTTGAT+TGG + chr1_1:9831934-9831953 Msa0006840:intron 20.0%
!!! ATTTTAATGCAAAAATGAGA+CGG - chr1_1:9832016-9832035 None:intergenic 20.0%
!! CATTAAAATGCTTATCAATT+AGG + chr1_1:9832027-9832046 Msa0006840:intron 20.0%
!! AAAAGTCAGCAATAATTTAT+TGG + chr1_1:9833938-9833957 Msa0006840:intron 20.0%
!!! ATTTAGAGCATATAGAAATA+TGG - chr1_1:9835252-9835271 None:intergenic 20.0%
!!! ATAATTTTTGGTACTTCTTT+TGG + chr1_1:9835875-9835894 Msa0006840:intron 20.0%
!!! CATATGTATTCATTTTAATG+TGG - chr1_1:9835922-9835941 None:intergenic 20.0%
!! CACATTAAAATGAATACATA+TGG + chr1_1:9835920-9835939 Msa0006840:intron 20.0%
!! AAATAAATTCCTATAACATG+TGG - chr1_1:9835947-9835966 None:intergenic 20.0%
!!! TTTTTTAAATGCAGATTTTG+TGG + chr1_1:9836194-9836213 Msa0006840:intron 20.0%
!! ATTCATACAATAAGTAATCT+GGG - chr1_1:9837264-9837283 None:intergenic 20.0%
!! TATAAAGTAATACTACACAT+TGG - chr1_1:9837321-9837340 None:intergenic 20.0%
! AATGGAATGAAACAAAAAGT+AGG - chr1_1:9831533-9831552 None:intergenic 25.0%
! TACAATGCAATGTCAAATAA+CGG - chr1_1:9831772-9831791 None:intergenic 25.0%
!! ACATCTCTAAAGAAAAAAGA+CGG - chr1_1:9832102-9832121 None:intergenic 25.0%
! TGACAAAATTTGTATGTATC+AGG + chr1_1:9832452-9832471 Msa0006840:intron 25.0%
!! TGTTTCTGTATCTGATAAAT+GGG - chr1_1:9832488-9832507 None:intergenic 25.0%
!! ATGTTTCTGTATCTGATAAA+TGG - chr1_1:9832489-9832508 None:intergenic 25.0%
! TTAAAATTTGATAGGAGTGA+CGG + chr1_1:9832787-9832806 Msa0006840:CDS 25.0%
! AAAATCCTGCAATAATTGAA+GGG + chr1_1:9832890-9832909 Msa0006840:CDS 25.0%
! TTTGATAAACAATATTGCCA+TGG + chr1_1:9832982-9833001 Msa0006840:CDS 25.0%
! AAAGTTCATATATTCATCAG+AGG - chr1_1:9833339-9833358 None:intergenic 25.0%
! ATAAACAAAATCATTCAGAG+AGG - chr1_1:9833396-9833415 None:intergenic 25.0%
!!! TCATTGATCTAGTTTGTTTA+TGG + chr1_1:9833597-9833616 Msa0006840:intron 25.0%
! AACTTGATAAGCAGAAAAAT+GGG - chr1_1:9833736-9833755 None:intergenic 25.0%
! AAACTTGATAAGCAGAAAAA+TGG - chr1_1:9833737-9833756 None:intergenic 25.0%
!!! TTATCAAGTTTTGCTTTGTT+TGG + chr1_1:9833746-9833765 Msa0006840:intron 25.0%
! ATGCAAACTTATAGAAGATT+TGG - chr1_1:9834374-9834393 None:intergenic 25.0%
! TTCTATAAGTTTGCATATAG+TGG + chr1_1:9834378-9834397 Msa0006840:CDS 25.0%
! AAAAGATTGATCATCCATAT+TGG - chr1_1:9834431-9834450 None:intergenic 25.0%
! ATATAGAGCAATGCAATATT+TGG - chr1_1:9834696-9834715 None:intergenic 25.0%
! AATATTGCATTGCTCTATAT+AGG + chr1_1:9834696-9834715 Msa0006840:intron 25.0%
! ATTGCATATCATAGAAAGTA+TGG - chr1_1:9834821-9834840 None:intergenic 25.0%
! TCTTATACCATATTATTCAG+TGG - chr1_1:9835044-9835063 None:intergenic 25.0%
!! AAAATACTGTGAATGTTTTC+AGG + chr1_1:9835213-9835232 Msa0006840:CDS 25.0%
!! TAAATGTTATGGATTGATGT+TGG + chr1_1:9835470-9835489 Msa0006840:intron 25.0%
!! AAATGTTATGGATTGATGTT+GGG + chr1_1:9835471-9835490 Msa0006840:intron 25.0%
! AAAAACTTAAAAGTTGTGCT+GGG - chr1_1:9835550-9835569 None:intergenic 25.0%
! AAAAAACTTAAAAGTTGTGC+TGG - chr1_1:9835551-9835570 None:intergenic 25.0%
! TATAGGAATTTATTTCAGCA+TGG + chr1_1:9835952-9835971 Msa0006840:intron 25.0%
! TTTAAAAAAAGGGGTCATTT+GGG - chr1_1:9837233-9837252 None:intergenic 25.0%
!! GAACCTTTGTTTAAAAAAAG+GGG - chr1_1:9837242-9837261 None:intergenic 25.0%
!! GGAACCTTTGTTTAAAAAAA+GGG - chr1_1:9837243-9837262 None:intergenic 25.0%
! GATTCATACAATAAGTAATC+TGG - chr1_1:9837265-9837284 None:intergenic 25.0%
AACGATGTATACTTGAACTT+GGG - chr1_1:9831281-9831300 None:intergenic 30.0%
AAACGATGTATACTTGAACT+TGG - chr1_1:9831282-9831301 None:intergenic 30.0%
! AGACAATGTTGTTTGATGAA+TGG - chr1_1:9831551-9831570 None:intergenic 30.0%
! CTTTCTGAAAATTCAGTATC+CGG - chr1_1:9831648-9831667 None:intergenic 30.0%
! TTAATCAATGTTTTCCATCG+TGG + chr1_1:9831701-9831720 Msa0006840:intron 30.0%
AGAATATTGTTCCAGAGATA+TGG - chr1_1:9831802-9831821 None:intergenic 30.0%
!! AAATTCACTAGACTTGCTTT+TGG + chr1_1:9831960-9831979 Msa0006840:intron 30.0%
TGGGTTAATTAACATAAGAG+AGG - chr1_1:9831991-9832010 None:intergenic 30.0%
!! CATTTCTAGTATCACGAAAA+AGG + chr1_1:9832175-9832194 Msa0006840:intron 30.0%
! GTGTTGACAAATCTCAAAAA+GGG - chr1_1:9832243-9832262 None:intergenic 30.0%
!! AGTGTTGACAAATCTCAAAA+AGG - chr1_1:9832244-9832263 None:intergenic 30.0%
GTTTATAACAGTTGCTCAAA+AGG + chr1_1:9832594-9832613 Msa0006840:CDS 30.0%
ATATTAGATTCCTCCAACAA+AGG - chr1_1:9832841-9832860 None:intergenic 30.0%
TTTGTTGGAGGAATCTAATA+TGG + chr1_1:9832840-9832859 Msa0006840:CDS 30.0%
CTAATATGGTTCATCAAGAA+AGG + chr1_1:9832854-9832873 Msa0006840:CDS 30.0%
GAAAATCCTGCAATAATTGA+AGG + chr1_1:9832889-9832908 Msa0006840:CDS 30.0%
AAATCCTGCAATAATTGAAG+GGG + chr1_1:9832891-9832910 Msa0006840:CDS 30.0%
ATAATTGAAGGGGAGAAAAA+TGG + chr1_1:9832901-9832920 Msa0006840:CDS 30.0%
ATTTGAAAATTGCAGTGAGA+TGG + chr1_1:9833228-9833247 Msa0006840:CDS 30.0%
ATTCTCTGAATTTACTTGTG+AGG - chr1_1:9833260-9833279 None:intergenic 30.0%
! CTAAATACTAGTCTCTTTAG+AGG + chr1_1:9833441-9833460 Msa0006840:intron 30.0%
!! ACATGTATTTTGTTTGCACT+TGG + chr1_1:9833544-9833563 Msa0006840:intron 30.0%
TTTAACGAAATTAGCAGAAG+TGG + chr1_1:9833648-9833667 Msa0006840:intron 30.0%
! TGCATATTTCTGCATAAGAT+AGG + chr1_1:9833676-9833695 Msa0006840:intron 30.0%
ACTTGATAAGCAGAAAAATG+GGG - chr1_1:9833735-9833754 None:intergenic 30.0%
! GCAATAATTTATTGGCTACA+AGG + chr1_1:9833946-9833965 Msa0006840:intron 30.0%
!!! AGAGTTGCATTTTGATTATC+AGG + chr1_1:9834032-9834051 Msa0006840:intron 30.0%
ATAATTGTTACAGTCAATGC+AGG + chr1_1:9834105-9834124 Msa0006840:intron 30.0%
CTTATTACTTCCAAGAACAA+CGG - chr1_1:9834188-9834207 None:intergenic 30.0%
AGATTATCAGATGGTATACA+GGG + chr1_1:9834346-9834365 Msa0006840:CDS 30.0%
!! CATGATAACTAACTTTTTCC+TGG - chr1_1:9834623-9834642 None:intergenic 30.0%
GTTATCATGATCTTTCTCAT+AGG + chr1_1:9834634-9834653 Msa0006840:intron 30.0%
ATTTGGTAAAACTAGCAAAC+AGG - chr1_1:9834679-9834698 None:intergenic 30.0%
TGATGTTCCACTGAATAATA+TGG + chr1_1:9835034-9835053 Msa0006840:CDS 30.0%
!!! ATCACCTAATTTTTTAAGGC+TGG - chr1_1:9835095-9835114 None:intergenic 30.0%
TCTGGTCAGTATAAATGTTA+TGG + chr1_1:9835459-9835478 Msa0006840:intron 30.0%
ACCAAATACTAGTCCTTATA+AGG + chr1_1:9835507-9835526 Msa0006840:intron 30.0%
! TCCTTATAAGGACTAGTATT+TGG - chr1_1:9835511-9835530 None:intergenic 30.0%
! CCTCAACAATTTTCCTTATA+AGG - chr1_1:9835523-9835542 None:intergenic 30.0%
CCTTATAAGGAAAATTGTTG+AGG + chr1_1:9835520-9835539 Msa0006840:intron 30.0%
!! TAAATTTTAGGGGTTCAAAC+TGG + chr1_1:9836029-9836048 Msa0006840:intron 30.0%
AACTTAGATGATGAATCAGA+TGG + chr1_1:9836746-9836765 Msa0006840:CDS 30.0%
AACCATTATACACACATTGA+GGG - chr1_1:9837073-9837092 None:intergenic 30.0%
!!! TTTTTTTTCTTCCCGCTATT+TGG + chr1_1:9837136-9837155 Msa0006840:three_prime_UTR 30.0%
AAACATTCTACACCAAATAG+CGG - chr1_1:9837151-9837170 None:intergenic 30.0%
!!! CTATTTGGTGTAGAATGTTT+TGG + chr1_1:9837151-9837170 Msa0006840:three_prime_UTR 30.0%
GTTTAAAAAAAGGGGTCATT+TGG - chr1_1:9837234-9837253 None:intergenic 30.0%
!!! TGACCCCTTTTTTTAAACAA+AGG + chr1_1:9837236-9837255 Msa0006840:three_prime_UTR 30.0%
! GGGAACCTTTGTTTAAAAAA+AGG - chr1_1:9837244-9837263 None:intergenic 30.0%
AAGTAATACTACACATTGGA+AGG - chr1_1:9837317-9837336 None:intergenic 30.0%
TCTTCTTCTTCTTCTTCTGA+TGG + chr1_1:9831168-9831187 Msa0006840:exon 35.0%
CTCTTAATCTTAGAAGCTTC+TGG - chr1_1:9831199-9831218 None:intergenic 35.0%
ACGATGTATACTTGAACTTG+GGG - chr1_1:9831280-9831299 None:intergenic 35.0%
TGATTCTTAGATCCTTAGAC+CGG + chr1_1:9831626-9831645 Msa0006840:intron 35.0%
AAAATTCAGTATCCGGTCTA+AGG - chr1_1:9831641-9831660 None:intergenic 35.0%
TGTACTGAATACCATATCTC+TGG + chr1_1:9831788-9831807 Msa0006840:intron 35.0%
! ATTGTTGTGAGAGACTTGTT+TGG + chr1_1:9831914-9831933 Msa0006840:intron 35.0%
! TCTTTAGAGATGTCTAGACT+AGG + chr1_1:9832109-9832128 Msa0006840:intron 35.0%
! TTTCCGAGTATTGTGTTTCA+CGG - chr1_1:9832371-9832390 None:intergenic 35.0%
TTTGTATGTATCAGGCTTGA+AGG + chr1_1:9832460-9832479 Msa0006840:intron 35.0%
GAAACATCTCAAAGTAACGT+AGG + chr1_1:9832502-9832521 Msa0006840:CDS 35.0%
ATCAGCCAAATATTCATCGA+CGG - chr1_1:9832671-9832690 None:intergenic 35.0%
CAGTAGATTGTTCCATTTCT+GGG - chr1_1:9832723-9832742 None:intergenic 35.0%
TCAGTAGATTGTTCCATTTC+TGG - chr1_1:9832724-9832743 None:intergenic 35.0%
AATGGAACAATCTACTGATG+CGG + chr1_1:9832726-9832745 Msa0006840:CDS 35.0%
AGTTCTTCTGCTATGTTACT+AGG - chr1_1:9832814-9832833 None:intergenic 35.0%
! AGAAGAACTTTTGCCTTTGT+TGG + chr1_1:9832825-9832844 Msa0006840:CDS 35.0%
! TCTCAAGAGCACATAAACTT+AGG + chr1_1:9832937-9832956 Msa0006840:CDS 35.0%
AGATCAATCAAAGAGACTAG+AGG - chr1_1:9833112-9833131 None:intergenic 35.0%
TTTCAAATTCCTTAACAGCC+TGG - chr1_1:9833216-9833235 None:intergenic 35.0%
ACAAAATCATTCAGAGAGGA+GGG - chr1_1:9833392-9833411 None:intergenic 35.0%
AACAAAATCATTCAGAGAGG+AGG - chr1_1:9833393-9833412 None:intergenic 35.0%
! ACTAAAAGTGTATTCAAGCC+TGG - chr1_1:9833476-9833495 None:intergenic 35.0%
GTACTGTGCTCTTCTTTAAT+TGG - chr1_1:9833526-9833545 None:intergenic 35.0%
TTGATAAGCAGAAAAATGGG+GGG - chr1_1:9833733-9833752 None:intergenic 35.0%
CTTGATAAGCAGAAAAATGG+GGG - chr1_1:9833734-9833753 None:intergenic 35.0%
!!! TCAAGTTTTGCTTTGTTTGG+AGG + chr1_1:9833749-9833768 Msa0006840:intron 35.0%
GTTTGGAGGTTTCAAAATTG+TGG + chr1_1:9833763-9833782 Msa0006840:intron 35.0%
TGAGTCCATGATGTAATATC+AGG - chr1_1:9833839-9833858 None:intergenic 35.0%
GATATTACATCATGGACTCA+AGG + chr1_1:9833839-9833858 Msa0006840:intron 35.0%
!! TAAGGGCATCTCTTAGAATA+AGG + chr1_1:9833863-9833882 Msa0006840:intron 35.0%
!! CTACAAGGTTTTAGTCATGT+AGG + chr1_1:9833961-9833980 Msa0006840:intron 35.0%
GTGTAATGGCATTATCTACT+TGG + chr1_1:9833998-9834017 Msa0006840:intron 35.0%
AACTTCAAGCAACGCAAAAA+TGG + chr1_1:9834228-9834247 Msa0006840:CDS 35.0%
GAGATTATCAGATGGTATAC+AGG + chr1_1:9834345-9834364 Msa0006840:CDS 35.0%
GATTATCAGATGGTATACAG+GGG + chr1_1:9834347-9834366 Msa0006840:CDS 35.0%
! TTTGCATATAGTGGAAAACG+TGG + chr1_1:9834387-9834406 Msa0006840:CDS 35.0%
GATTGATCATCCATATTGGA+CGG - chr1_1:9834427-9834446 None:intergenic 35.0%
!! GATAACTAACTTTTTCCTGG+AGG - chr1_1:9834620-9834639 None:intergenic 35.0%
! TGCAGTTACTGTGATTGTTT+TGG + chr1_1:9834867-9834886 Msa0006840:intron 35.0%
TGGTAACAGAGTAGAATTTC+AGG + chr1_1:9834932-9834951 Msa0006840:CDS 35.0%
!!! ACCTAATTTTTTAAGGCTGG+CGG - chr1_1:9835092-9835111 None:intergenic 35.0%
!!! TATTTTGATGTGACCTTTGC+AGG + chr1_1:9835114-9835133 Msa0006840:intron 35.0%
ATATTCACATCTTCCTGCAA+AGG - chr1_1:9835130-9835149 None:intergenic 35.0%
AGATGTGAATATGACAACAC+CGG + chr1_1:9835138-9835157 Msa0006840:CDS 35.0%
AAAGAGGTTGCAATTGCAAA+AGG + chr1_1:9835176-9835195 Msa0006840:CDS 35.0%
ATTTGTCAAAAGGCTAACGT+TGG + chr1_1:9835316-9835335 Msa0006840:intron 35.0%
GATGGATGTATGAATGTCTT+TGG + chr1_1:9835361-9835380 Msa0006840:CDS 35.0%
!! ACACAGTTTAACTTGTTGTC+TGG + chr1_1:9835441-9835460 Msa0006840:intron 35.0%
ACATATGGTCCACATGTTAT+AGG + chr1_1:9835935-9835954 Msa0006840:intron 35.0%
TGAGAGACTAAACTGAAAGT+TGG + chr1_1:9836063-9836082 Msa0006840:intron 35.0%
TATAGTTGACATCCACATGA+GGG + chr1_1:9836125-9836144 Msa0006840:intron 35.0%
! AAATGCAGATTTTGTGGCAA+TGG + chr1_1:9836200-9836219 Msa0006840:intron 35.0%
AACATGCATCTAGCAATGAA+AGG + chr1_1:9836223-9836242 Msa0006840:CDS 35.0%
ACATGCATCTAGCAATGAAA+GGG + chr1_1:9836224-9836243 Msa0006840:CDS 35.0%
AGAGCAACATTGTTGAAGAA+GGG + chr1_1:9836247-9836266 Msa0006840:CDS 35.0%
GACAGAAAATTGTGACAATC+AGG + chr1_1:9836292-9836311 Msa0006840:CDS 35.0%
!!! GCGTGGTTTTTTAGAAGATT+TGG - chr1_1:9836546-9836565 None:intergenic 35.0%
CTTCATCTACAGAAAATGAG+TGG + chr1_1:9836621-9836640 Msa0006840:CDS 35.0%
TGAAACACCTGATGTATTGA+AGG + chr1_1:9836793-9836812 Msa0006840:CDS 35.0%
TTTGCTTTCACAGACTTGAT+GGG - chr1_1:9836830-9836849 None:intergenic 35.0%
ATTTGCTTTCACAGACTTGA+TGG - chr1_1:9836831-9836850 None:intergenic 35.0%
!! GATTCTAAAGTCCTTTGCAA+TGG + chr1_1:9836989-9837008 Msa0006840:CDS 35.0%
CAACCATTATACACACATTG+AGG - chr1_1:9837074-9837093 None:intergenic 35.0%
CTCAATGTGTGTATAATGGT+TGG + chr1_1:9837072-9837091 Msa0006840:three_prime_UTR 35.0%
AACATTCTACACCAAATAGC+GGG - chr1_1:9837150-9837169 None:intergenic 35.0%
AAATAGATTGAAGAAGAGGG+AGG - chr1_1:9837198-9837217 None:intergenic 35.0%
TCCCTCTTCTTCAATCTATT+TGG + chr1_1:9837197-9837216 Msa0006840:three_prime_UTR 35.0%
GCCAAATAGATTGAAGAAGA+GGG - chr1_1:9837201-9837220 None:intergenic 35.0%
TGCCAAATAGATTGAAGAAG+AGG - chr1_1:9837202-9837221 None:intergenic 35.0%
CTTCAATCTATTTGGCAAAC+AGG + chr1_1:9837205-9837224 Msa0006840:three_prime_UTR 35.0%
!! ATACAGAATCTGTTCTGAGA+AGG - chr1_1:9837374-9837393 None:intergenic 35.0%
GATGTATACTTGAACTTGGG+GGG - chr1_1:9831278-9831297 None:intergenic 40.0%
CGATGTATACTTGAACTTGG+GGG - chr1_1:9831279-9831298 None:intergenic 40.0%
TTATACTACCCCCCTTTGAT+TGG + chr1_1:9831318-9831337 Msa0006840:intron 40.0%
TATACTACCCCCCTTTGATT+GGG + chr1_1:9831319-9831338 Msa0006840:intron 40.0%
TGTCAAGAACCCCAATCAAA+GGG - chr1_1:9831332-9831351 None:intergenic 40.0%
!! CTATTTTTCGCAATCCACGA+TGG - chr1_1:9831718-9831737 None:intergenic 40.0%
ACTTGACAGTGCTGTGTTAA+TGG + chr1_1:9831839-9831858 Msa0006840:intron 40.0%
!! GCTGTGTTAATGGACTTTAG+AGG + chr1_1:9831849-9831868 Msa0006840:intron 40.0%
ATTTATGCACTTGTGCGTTG+TGG + chr1_1:9831872-9831891 Msa0006840:intron 40.0%
ATGCAAAAATGAGACGGTGT+GGG - chr1_1:9832010-9832029 None:intergenic 40.0%
AATGCAAAAATGAGACGGTG+TGG - chr1_1:9832011-9832030 None:intergenic 40.0%
ATTAGGCGTATGTGCATTGT+CGG + chr1_1:9832044-9832063 Msa0006840:intron 40.0%
CTTGTCGTCTTCTTCATTTC+AGG + chr1_1:9832212-9832231 Msa0006840:intron 40.0%
GTGAAACACAATACTCGGAA+AGG + chr1_1:9832370-9832389 Msa0006840:CDS 40.0%
GCAACTGTTATAAACACCTC+TGG - chr1_1:9832589-9832608 None:intergenic 40.0%
AAATATTCATCGACGGATGC+TGG - chr1_1:9832664-9832683 None:intergenic 40.0%
AGCATCCGTCGATGAATATT+TGG + chr1_1:9832663-9832682 Msa0006840:CDS 40.0%
TGGATACATTTGATCGTCCA+CGG - chr1_1:9832695-9832714 None:intergenic 40.0%
AACAATCTACTGATGCGGTT+GGG + chr1_1:9832731-9832750 Msa0006840:CDS 40.0%
GTCATCATCACTAACTGAGT+CGG + chr1_1:9832753-9832772 Msa0006840:CDS 40.0%
! AGAACTTTTGCCTTTGTTGG+AGG + chr1_1:9832828-9832847 Msa0006840:CDS 40.0%
TTCTCCCCTTCAATTATTGC+AGG - chr1_1:9832898-9832917 None:intergenic 40.0%
! GGAGAAAAATGGTGCTGAAT+TGG + chr1_1:9832912-9832931 Msa0006840:CDS 40.0%
ATAAACTTAGGCTCGAGTTC+AGG + chr1_1:9832949-9832968 Msa0006840:CDS 40.0%
AATTTCAAGCTTCAGTGTGC+AGG + chr1_1:9833136-9833155 Msa0006840:intron 40.0%
ATAGGATCAGGCATCAATTG+AGG - chr1_1:9833193-9833212 None:intergenic 40.0%
AATTCCTTAACAGCCTGGAT+AGG - chr1_1:9833211-9833230 None:intergenic 40.0%
TCAGAGAATATCCCACAAGA+TGG + chr1_1:9833271-9833290 Msa0006840:CDS 40.0%
TTACCTCAGAACCATCTTGT+GGG - chr1_1:9833285-9833304 None:intergenic 40.0%
ATTACCTCAGAACCATCTTG+TGG - chr1_1:9833286-9833305 None:intergenic 40.0%
! CTTTAGAGGTTAATGACTCC+AGG + chr1_1:9833455-9833474 Msa0006840:intron 40.0%
CGAGTCCTGATATTACATCA+TGG + chr1_1:9833831-9833850 Msa0006840:intron 40.0%
ACATCATGGACTCAAGGTTA+AGG + chr1_1:9833845-9833864 Msa0006840:intron 40.0%
CATCATGGACTCAAGGTTAA+GGG + chr1_1:9833846-9833865 Msa0006840:intron 40.0%
ATGAGACTACAGTGGTGTAA+TGG + chr1_1:9833984-9834003 Msa0006840:intron 40.0%
TACGGATGCCATGATACTTT+AGG - chr1_1:9834135-9834154 None:intergenic 40.0%
TTTAAATGCAACCCAATGCC+TGG - chr1_1:9834277-9834296 None:intergenic 40.0%
ACAGGTGTGAGATTATCAGA+TGG + chr1_1:9834337-9834356 Msa0006840:CDS 40.0%
! CTACTGAAGCATCAGTTTCA+TGG - chr1_1:9834474-9834493 None:intergenic 40.0%
TTCTGTCAAGATAGGAGACT+CGG - chr1_1:9834515-9834534 None:intergenic 40.0%
! TCGATGGATTCTGTCAAGAT+AGG - chr1_1:9834523-9834542 None:intergenic 40.0%
AGAATCCATCGACCTATATC+CGG + chr1_1:9834531-9834550 Msa0006840:CDS 40.0%
AAATGCACCTGATAAGAGGA+GGG + chr1_1:9834555-9834574 Msa0006840:CDS 40.0%
TTGAATTCCTCAGCATCTGT+GGG - chr1_1:9834586-9834605 None:intergenic 40.0%
!! ACAAGTACTGATGATGCCAA+TGG + chr1_1:9834725-9834744 Msa0006840:CDS 40.0%
TTCTTACAGTTGCACGTCTT+AGG - chr1_1:9834752-9834771 None:intergenic 40.0%
!!! TACTGTGATTGTTTTGGTGC+TGG + chr1_1:9834873-9834892 Msa0006840:CDS 40.0%
! AGCAAATGCTTGTGGATTAC+GGG - chr1_1:9834991-9835010 None:intergenic 40.0%
! GAGCAAATGCTTGTGGATTA+CGG - chr1_1:9834992-9835011 None:intergenic 40.0%
!!! CCTAATTTTTTAAGGCTGGC+GGG - chr1_1:9835091-9835110 None:intergenic 40.0%
AATGTCTTTGGCAAGAGAGA+AGG + chr1_1:9835373-9835392 Msa0006840:CDS 40.0%
! TGTTATGGATTGATGTTGGG+AGG + chr1_1:9835474-9835493 Msa0006840:intron 40.0%
TACTGGCAGCATAAAGCAAA+GGG - chr1_1:9835676-9835695 None:intergenic 40.0%
TTACTGGCAGCATAAAGCAA+AGG - chr1_1:9835677-9835696 None:intergenic 40.0%
GTATAGTTGACATCCACATG+AGG + chr1_1:9836124-9836143 Msa0006840:intron 40.0%
GAGAGCAACATTGTTGAAGA+AGG + chr1_1:9836246-9836265 Msa0006840:CDS 40.0%
CAACATTGTTGAAGAAGGGT+TGG + chr1_1:9836251-9836270 Msa0006840:CDS 40.0%
!! CATTGCAACAATGGTGTTAC+AGG - chr1_1:9836351-9836370 None:intergenic 40.0%
!! TACTCAGAGCATTGCAACAA+TGG - chr1_1:9836360-9836379 None:intergenic 40.0%
! GTCCTTTCATTTGTGCTGAT+TGG + chr1_1:9836454-9836473 Msa0006840:intron 40.0%
TTGGCTGGACAAATGCAAAA+AGG - chr1_1:9836480-9836499 None:intergenic 40.0%
! TTTTTGCATTTGTCCAGCCA+AGG + chr1_1:9836479-9836498 Msa0006840:intron 40.0%
TCTGTAGATGAAGAACGTGT+AGG - chr1_1:9836614-9836633 None:intergenic 40.0%
!! CATCTATTGGAGAGTTGGTA+TGG - chr1_1:9836659-9836678 None:intergenic 40.0%
TACCAACTCTCCAATAGATG+CGG + chr1_1:9836659-9836678 Msa0006840:CDS 40.0%
ATCATCTAAGTTAGCGCTTG+GGG - chr1_1:9836738-9836757 None:intergenic 40.0%
CATCATCTAAGTTAGCGCTT+GGG - chr1_1:9836739-9836758 None:intergenic 40.0%
TCATCATCTAAGTTAGCGCT+TGG - chr1_1:9836740-9836759 None:intergenic 40.0%
GAAGCTTCCTTCAATACATC+AGG - chr1_1:9836803-9836822 None:intergenic 40.0%
! GGAGAAACTCTCTTTTGGAT+TGG - chr1_1:9836857-9836876 None:intergenic 40.0%
TTGATCCAATCCGAAGTAGA+TGG - chr1_1:9836889-9836908 None:intergenic 40.0%
AATCCTCATTGCCATTGCAA+AGG - chr1_1:9837003-9837022 None:intergenic 40.0%
TTGCAATGGCAATGAGGATT+CGG + chr1_1:9837003-9837022 Msa0006840:CDS 40.0%
! GAGGGCAATATTTTGCTTTC+AGG - chr1_1:9837055-9837074 None:intergenic 40.0%
TGCCCTCAATGTGTGTATAA+TGG + chr1_1:9837068-9837087 Msa0006840:three_prime_UTR 40.0%
ATAATGGTTGGCATCTTGTC+TGG + chr1_1:9837084-9837103 Msa0006840:three_prime_UTR 40.0%
TGCTGTTCCATATGCTCAAA+TGG + chr1_1:9837420-9837439 Msa0006840:three_prime_UTR 40.0%
AGTTGAGGAGAGAGAAGAAG+AGG - chr1_1:9831230-9831249 None:intergenic 45.0%
ATACTACCCCCCTTTGATTG+GGG + chr1_1:9831320-9831339 Msa0006840:intron 45.0%
TCAAGAACCCCAATCAAAGG+GGG - chr1_1:9831330-9831349 None:intergenic 45.0%
GTCAAGAACCCCAATCAAAG+GGG - chr1_1:9831331-9831350 None:intergenic 45.0%
GTGTCAAGAACCCCAATCAA+AGG - chr1_1:9831333-9831352 None:intergenic 45.0%
TGCAATGTCAAATAACGGCG+CGG - chr1_1:9831767-9831786 None:intergenic 45.0%
AACACAGCACTGTCAAGTAG+TGG - chr1_1:9831837-9831856 None:intergenic 45.0%
GTCTCCAATAAAGCCTGTCA+AGG + chr1_1:9832266-9832285 Msa0006840:CDS 45.0%
! GAAGCCTTGACAGGCTTTAT+TGG - chr1_1:9832273-9832292 None:intergenic 45.0%
! GAGTATTGTGTTTCACGGTG+GGG - chr1_1:9832366-9832385 None:intergenic 45.0%
! CGAGTATTGTGTTTCACGGT+GGG - chr1_1:9832367-9832386 None:intergenic 45.0%
CCACCGTGAAACACAATACT+CGG + chr1_1:9832365-9832384 Msa0006840:CDS 45.0%
AACGTAGGAGACAACAGTCT+TGG + chr1_1:9832517-9832536 Msa0006840:CDS 45.0%
GTTATAAACACCTCTGGCAG+TGG - chr1_1:9832583-9832602 None:intergenic 45.0%
GGGTATTCGCATCATTCTTG+AGG - chr1_1:9832627-9832646 None:intergenic 45.0%
TGAATATTTGGCTGATCCCG+TGG + chr1_1:9832675-9832694 Msa0006840:CDS 45.0%
GGATACATTTGATCGTCCAC+GGG - chr1_1:9832694-9832713 None:intergenic 45.0%
GTATCCAGTCAACCCAGAAA+TGG + chr1_1:9832708-9832727 Msa0006840:CDS 45.0%
! TGTTCCATTTCTGGGTTGAC+TGG - chr1_1:9832715-9832734 None:intergenic 45.0%
GAACAATCTACTGATGCGGT+TGG + chr1_1:9832730-9832749 Msa0006840:CDS 45.0%
AGCAAGAGCTTAGTTACCTG+GGG - chr1_1:9833015-9833034 None:intergenic 45.0%
CAGCAAGAGCTTAGTTACCT+GGG - chr1_1:9833016-9833035 None:intergenic 45.0%
ACAGCAAGAGCTTAGTTACC+TGG - chr1_1:9833017-9833036 None:intergenic 45.0%
ATTGATGCCTGATCCTATCC+AGG + chr1_1:9833195-9833214 Msa0006840:CDS 45.0%
TTAACAGCCTGGATAGGATC+AGG - chr1_1:9833205-9833224 None:intergenic 45.0%
TGATCCTATCCAGGCTGTTA+AGG + chr1_1:9833204-9833223 Msa0006840:CDS 45.0%
! TATCCCACAAGATGGTTCTG+AGG + chr1_1:9833279-9833298 Msa0006840:CDS 45.0%
ATGGCCATTTGCATGCATCA+TGG + chr1_1:9833616-9833635 Msa0006840:intron 45.0%
CATGTAGGATGAGACTACAG+TGG + chr1_1:9833976-9833995 Msa0006840:intron 45.0%
!! CAGGCTAGCCTAAAGTATCA+TGG + chr1_1:9834124-9834143 Msa0006840:CDS 45.0%
CAAATTGTAGGCAGCGTCTA+CGG - chr1_1:9834153-9834172 None:intergenic 45.0%
GTAGACGCTGCCTACAATTT+GGG + chr1_1:9834152-9834171 Msa0006840:CDS 45.0%
TAGACGCTGCCTACAATTTG+GGG + chr1_1:9834153-9834172 Msa0006840:CDS 45.0%
AAGCAGCTTCCCCAAATTGT+AGG - chr1_1:9834165-9834184 None:intergenic 45.0%
GTAGTTGAAGCACAACTAGG+TGG - chr1_1:9834319-9834338 None:intergenic 45.0%
CCTGTAGTTGAAGCACAACT+AGG - chr1_1:9834322-9834341 None:intergenic 45.0%
CCTAGTTGTGCTTCAACTAC+AGG + chr1_1:9834319-9834338 Msa0006840:CDS 45.0%
ATCCTCAACTCCGTCCAATA+TGG + chr1_1:9834414-9834433 Msa0006840:CDS 45.0%
ATCCATATTGGACGGAGTTG+AGG - chr1_1:9834419-9834438 None:intergenic 45.0%
ATTTGCCGGATATAGGTCGA+TGG - chr1_1:9834539-9834558 None:intergenic 45.0%
CTCTTATCAGGTGCATTTGC+CGG - chr1_1:9834553-9834572 None:intergenic 45.0%
CAAATGCACCTGATAAGAGG+AGG + chr1_1:9834554-9834573 Msa0006840:CDS 45.0%
TGAATTCCTCAGCATCTGTG+GGG - chr1_1:9834585-9834604 None:intergenic 45.0%
GTTGAATTCCTCAGCATCTG+TGG - chr1_1:9834587-9834606 None:intergenic 45.0%
!!! AACTTTTTCCTGGAGGTGCT+AGG - chr1_1:9834613-9834632 None:intergenic 45.0%
!! TTTGGTGCTGGAATCTTCTG+TGG + chr1_1:9834885-9834904 Msa0006840:CDS 45.0%
ATCTTGGGAGCAAATGCTTG+TGG - chr1_1:9834999-9835018 None:intergenic 45.0%
GCTGCACATGGTACAATCTT+GGG - chr1_1:9835014-9835033 None:intergenic 45.0%
AGCTGCACATGGTACAATCT+TGG - chr1_1:9835015-9835034 None:intergenic 45.0%
CCCGCCAGCCTTAAAAAATT+AGG + chr1_1:9835088-9835107 Msa0006840:intron 45.0%
ACTTAAAAGTTGTGCTGGGC+TGG - chr1_1:9835546-9835565 None:intergenic 45.0%
!! TAGGGTTTGAGTTGAGGTTC+TGG - chr1_1:9835594-9835613 None:intergenic 45.0%
TCTAGCATTCTACCTGGACT+TGG - chr1_1:9835624-9835643 None:intergenic 45.0%
TCCAGGTAGAATGCTAGAGA+TGG + chr1_1:9835626-9835645 Msa0006840:intron 45.0%
ACCATCTCTAGCATTCTACC+TGG - chr1_1:9835630-9835649 None:intergenic 45.0%
!! GCAAAGGGGTGTCATTTGTA+TGG - chr1_1:9835661-9835680 None:intergenic 45.0%
ACTGGCAGCATAAAGCAAAG+GGG - chr1_1:9835675-9835694 None:intergenic 45.0%
GCTGCCAGTAATAATCTCTG+CGG + chr1_1:9835686-9835705 Msa0006840:intron 45.0%
TGCACCGCAGAGATTATTAC+TGG - chr1_1:9835693-9835712 None:intergenic 45.0%
! TAATCTCTGCGGTGCACTTT+TGG + chr1_1:9835697-9835716 Msa0006840:intron 45.0%
ACAGGTGAGAGGTGATTTAC+TGG - chr1_1:9836333-9836352 None:intergenic 45.0%
!! ACAATGGTGTTACAGGTGAG+AGG - chr1_1:9836344-9836363 None:intergenic 45.0%
GGCCAATCAGCACAAATGAA+AGG - chr1_1:9836459-9836478 None:intergenic 45.0%
TAAAAAACCACGCAGCAGTC+TGG + chr1_1:9836553-9836572 Msa0006840:CDS 45.0%
!! CTATTGGAGAGTTGGTATGG+TGG - chr1_1:9836656-9836675 None:intergenic 45.0%
TACCGCATCTATTGGAGAGT+TGG - chr1_1:9836664-9836683 None:intergenic 45.0%
AAGTTAGCGCTTGGGGTAAT+CGG - chr1_1:9836731-9836750 None:intergenic 45.0%
! GTGGAGGAGAAACTCTCTTT+TGG - chr1_1:9836862-9836881 None:intergenic 45.0%
!! GACTTTAGAATCAGCGCAAG+GGG - chr1_1:9836981-9837000 None:intergenic 45.0%
!! GGACTTTAGAATCAGCGCAA+GGG - chr1_1:9836982-9837001 None:intergenic 45.0%
!! AGGACTTTAGAATCAGCGCA+AGG - chr1_1:9836983-9837002 None:intergenic 45.0%
AGTCCTTTGCAATGGCAATG+AGG + chr1_1:9836997-9837016 Msa0006840:CDS 45.0%
TGCAATGGCAATGAGGATTC+GGG + chr1_1:9837004-9837023 Msa0006840:CDS 45.0%
CGAGACTCCATTTGAGCATA+TGG - chr1_1:9837430-9837449 None:intergenic 45.0%
ATGGAGTCTCGTCCTTTAAG+AGG + chr1_1:9837439-9837458 Msa0006840:three_prime_UTR 45.0%
! TGGAGTCTCGTCCTTTAAGA+GGG + chr1_1:9837440-9837459 Msa0006840:three_prime_UTR 45.0%
AACTTGGGGGGATTCATCAG+TGG - chr1_1:9831266-9831285 None:intergenic 50.0%
CAAGAACCCCAATCAAAGGG+GGG - chr1_1:9831329-9831348 None:intergenic 50.0%
AAGGCTTCTCATGCGACACA+TGG + chr1_1:9832285-9832304 Msa0006840:CDS 50.0%
AGGCTTCTCATGCGACACAT+GGG + chr1_1:9832286-9832305 Msa0006840:CDS 50.0%
CATGCGACACATGGGTTTCT+CGG + chr1_1:9832294-9832313 Msa0006840:CDS 50.0%
GGAGACTTGAATACGAGAGG+TGG - chr1_1:9832330-9832349 None:intergenic 50.0%
! CCGAGTATTGTGTTTCACGG+TGG - chr1_1:9832368-9832387 None:intergenic 50.0%
TATTCATCGACGGATGCTGG+AGG - chr1_1:9832661-9832680 None:intergenic 50.0%
TTACCTGGGGAAGTGAACCA+TGG - chr1_1:9833002-9833021 None:intergenic 50.0%
CCTGCCATGATGCATGCAAA+TGG - chr1_1:9833623-9833642 None:intergenic 50.0%
CCATTTGCATGCATCATGGC+AGG + chr1_1:9833620-9833639 Msa0006840:intron 50.0%
CGTAGACGCTGCCTACAATT+TGG + chr1_1:9834151-9834170 Msa0006840:CDS 50.0%
GAAGCTGCTTCCGTTGTTCT+TGG + chr1_1:9834175-9834194 Msa0006840:CDS 50.0%
TTTCCAAGCCACCAGGCATT+GGG + chr1_1:9834263-9834282 Msa0006840:CDS 50.0%
AAATGCAACCCAATGCCTGG+TGG - chr1_1:9834274-9834293 None:intergenic 50.0%
CAGGTGCATTTGCCGGATAT+AGG - chr1_1:9834546-9834565 None:intergenic 50.0%
CGGCAAATGCACCTGATAAG+AGG + chr1_1:9834551-9834570 Msa0006840:CDS 50.0%
!!! TTTTCCTGGAGGTGCTAGGA+TGG - chr1_1:9834609-9834628 None:intergenic 50.0%
GTTGCACGTCTTAGGTCCAT+TGG - chr1_1:9834744-9834763 None:intergenic 50.0%
AGTGGAACATCAGCTGCACA+TGG - chr1_1:9835026-9835045 None:intergenic 50.0%
! CTTTTGTGCCTAGCTGATGC+CGG - chr1_1:9835160-9835179 None:intergenic 50.0%
GCATCAGCTAGGCACAAAAG+AGG + chr1_1:9835160-9835179 Msa0006840:CDS 50.0%
TCGACTGGATGTCGATGTGA+TGG + chr1_1:9835343-9835362 Msa0006840:CDS 50.0%
!! TTCTACCTGGACTTGGTGGT+GGG - chr1_1:9835617-9835636 None:intergenic 50.0%
!! ATTCTACCTGGACTTGGTGG+TGG - chr1_1:9835618-9835637 None:intergenic 50.0%
AGCATTCTACCTGGACTTGG+TGG - chr1_1:9835621-9835640 None:intergenic 50.0%
!! GGTGCACTTTTGGAAGTGGT+GGG + chr1_1:9835707-9835726 Msa0006840:intron 50.0%
ACATCCACATGAGGGAAGAG+TGG + chr1_1:9836133-9836152 Msa0006840:intron 50.0%
CATCCACATGAGGGAAGAGT+GGG + chr1_1:9836134-9836153 Msa0006840:intron 50.0%
CTGGCGAATACCGCATCTAT+TGG - chr1_1:9836672-9836691 None:intergenic 50.0%
TGCGGTATTCGCCAGTTATC+TGG + chr1_1:9836677-9836696 Msa0006840:CDS 50.0%
GCGGTATTCGCCAGTTATCT+GGG + chr1_1:9836678-9836697 Msa0006840:CDS 50.0%
CGGTATTCGCCAGTTATCTG+GGG + chr1_1:9836679-9836698 Msa0006840:CDS 50.0%
GGTATTCGCCAGTTATCTGG+GGG + chr1_1:9836680-9836699 Msa0006840:CDS 50.0%
CTCCACAGAGCCATCTACTT+CGG + chr1_1:9836876-9836895 Msa0006840:CDS 50.0%
! ATCCGAAGTAGATGGCTCTG+TGG - chr1_1:9836881-9836900 None:intergenic 50.0%
CAGAGCCATCTACTTCGGAT+TGG + chr1_1:9836881-9836900 Msa0006840:CDS 50.0%
ATTGGATCAAGCTCCTCAGG+TGG + chr1_1:9836899-9836918 Msa0006840:CDS 50.0%
TCCTCAGGTGGCTTGAAAAG+TGG + chr1_1:9836911-9836930 Msa0006840:CDS 50.0%
!! AGAGGGAGGTGTCACAGAAA+TGG - chr1_1:9837184-9837203 None:intergenic 50.0%
! GTCTCGTCCTTTAAGAGGGA+TGG + chr1_1:9837444-9837463 Msa0006840:three_prime_UTR 50.0%
AACACGGCCATCCCTCTTAA+AGG - chr1_1:9837454-9837473 None:intergenic 50.0%
TTGGGGGGATTCATCAGTGG+TGG - chr1_1:9831263-9831282 None:intergenic 55.0%
GCGTATGTGCATTGTCGGAC+TGG + chr1_1:9832049-9832068 Msa0006840:intron 55.0%
GTCGCATGAGAAGCCTTGAC+AGG - chr1_1:9832282-9832301 None:intergenic 55.0%
CGCGGAGACTTGAATACGAG+AGG - chr1_1:9832333-9832352 None:intergenic 55.0%
TGCTGGAGGACTGCAGCTTT+GGG - chr1_1:9832647-9832666 None:intergenic 55.0%
ATGCTGGAGGACTGCAGCTT+TGG - chr1_1:9832648-9832667 None:intergenic 55.0%
TTGCCATGGTTCACTTCCCC+AGG + chr1_1:9832996-9833015 Msa0006840:CDS 55.0%
GTGACAGTTTCCAAGCCACC+AGG + chr1_1:9834256-9834275 Msa0006840:CDS 55.0%
GTTTCCAAGCCACCAGGCAT+TGG + chr1_1:9834262-9834281 Msa0006840:CDS 55.0%
TCAACCATCCTAGCACCTCC+AGG + chr1_1:9834602-9834621 Msa0006840:CDS 55.0%
GCTGGAATCTTCTGTGGCGA+CGG + chr1_1:9834891-9834910 Msa0006840:CDS 55.0%
TGACAACACCGGCATCAGCT+AGG + chr1_1:9835149-9835168 Msa0006840:CDS 55.0%
GCTAACGTTGGATGCTCGAC+TGG + chr1_1:9835328-9835347 Msa0006840:CDS 55.0%
!! GGTGGGTAGGGTTTGAGTTG+AGG - chr1_1:9835600-9835619 None:intergenic 55.0%
!! CTGCGGTGCACTTTTGGAAG+TGG + chr1_1:9835703-9835722 Msa0006840:intron 55.0%
!! CGGTGCACTTTTGGAAGTGG+TGG + chr1_1:9835706-9835725 Msa0006840:intron 55.0%
TTTGTCCAGCCAAGGCAAGC+AGG + chr1_1:9836487-9836506 Msa0006840:intron 55.0%
TTGTCCAGCCAAGGCAAGCA+GGG + chr1_1:9836488-9836507 Msa0006840:intron 55.0%
ACTTTGCACCCTGCTTGCCT+TGG - chr1_1:9836499-9836518 None:intergenic 55.0%
GAAGAGAGCCCCCAGATAAC+TGG - chr1_1:9836691-9836710 None:intergenic 55.0%
TATCTGGGGGCTCTCTTCGT+TGG + chr1_1:9836693-9836712 Msa0006840:CDS 55.0%
! CGAAGTAGATGGCTCTGTGG+AGG - chr1_1:9836878-9836897 None:intergenic 55.0%
! CGGATTGGATCAAGCTCCTC+AGG + chr1_1:9836896-9836915 Msa0006840:CDS 55.0%
!!! GCCACTTTTCAAGCCACCTG+AGG - chr1_1:9836915-9836934 None:intergenic 55.0%
CAGGTGGCTTGAAAAGTGGC+AGG + chr1_1:9836915-9836934 Msa0006840:CDS 55.0%
GAATCAGCGCAAGGGGTCAA+CGG - chr1_1:9836974-9836993 None:intergenic 55.0%
! GGTGGCGGCATTGAGAGTTG+AGG - chr1_1:9831245-9831264 None:intergenic 60.0%
GGGGGATTCATCAGTGGTGG+CGG - chr1_1:9831260-9831279 None:intergenic 60.0%
TTCTCAGCAGCCACTGCCAG+AGG + chr1_1:9832570-9832589 Msa0006840:CDS 60.0%
CAACCCAATGCCTGGTGGCT+TGG - chr1_1:9834269-9834288 None:intergenic 60.0%
GGGCGTACCCTCCTCTTATC+AGG - chr1_1:9834565-9834584 None:intergenic 60.0%
GGTTGTGCTTGCGAAGGCTG+TGG + chr1_1:9834912-9834931 Msa0006840:CDS 60.0%
!! CCTGGACTTGGTGGTGGGTA+GGG - chr1_1:9835612-9835631 None:intergenic 60.0%
!! ACCTGGACTTGGTGGTGGGT+AGG - chr1_1:9835613-9835632 None:intergenic 60.0%
GCACCCACTCTTCCCTCATG+TGG - chr1_1:9836140-9836159 None:intergenic 60.0%
GAATGTGCCAGACTGCTGCG+TGG - chr1_1:9836563-9836582 None:intergenic 60.0%
!! CGGTGGGGAGCACTGATACG+CGG - chr1_1:9832351-9832370 None:intergenic 65.0%
GGTACGCCCCACAGATGCTG+AGG + chr1_1:9834576-9834595 Msa0006840:CDS 65.0%
GGCGACGGTTGTGCTTGCGA+AGG + chr1_1:9834906-9834925 Msa0006840:CDS 65.0%
CCCTACCCACCACCAAGTCC+AGG + chr1_1:9835609-9835628 Msa0006840:intron 65.0%
TGCACCCTGCTTGCCTTGGC+TGG - chr1_1:9836495-9836514 None:intergenic 65.0%
GGGGTCAACGGCGGGAATGA+AGG - chr1_1:9836962-9836981 None:intergenic 65.0%
TCAGCGCAAGGGGTCAACGG+CGG - chr1_1:9836971-9836990 None:intergenic 65.0%
GGGGGCTCTCTTCGTTGGCG+CGG + chr1_1:9836698-9836717 Msa0006840:CDS 70.0%
CAGCGCAAGGGGTCAACGGC+GGG - chr1_1:9836970-9836989 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9831084 9837480 9831084 ID=Msa0006840;Name=Msa0006840
chr1_1 mRNA 9831084 9837480 9831084 ID=Msa0006840-mRNA-1;Parent=Msa0006840;Name=Msa0006840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=103|1|1|1|0.9|1|11|429|870
chr1_1 exon 9831084 9831288 9831084 ID=Msa0006840-mRNA-1:exon:3507;Parent=Msa0006840-mRNA-1
chr1_1 exon 9832234 9832391 9832234 ID=Msa0006840-mRNA-1:exon:3508;Parent=Msa0006840-mRNA-1
chr1_1 exon 9832474 9833017 9832474 ID=Msa0006840-mRNA-1:exon:3509;Parent=Msa0006840-mRNA-1
chr1_1 exon 9833151 9833300 9833151 ID=Msa0006840-mRNA-1:exon:3510;Parent=Msa0006840-mRNA-1
chr1_1 exon 9834118 9834629 9834118 ID=Msa0006840-mRNA-1:exon:3511;Parent=Msa0006840-mRNA-1
chr1_1 exon 9834718 9834789 9834718 ID=Msa0006840-mRNA-1:exon:3512;Parent=Msa0006840-mRNA-1
chr1_1 exon 9834872 9835055 9834872 ID=Msa0006840-mRNA-1:exon:3513;Parent=Msa0006840-mRNA-1
chr1_1 exon 9835136 9835234 9835136 ID=Msa0006840-mRNA-1:exon:3514;Parent=Msa0006840-mRNA-1
chr1_1 exon 9835328 9835394 9835328 ID=Msa0006840-mRNA-1:exon:3515;Parent=Msa0006840-mRNA-1
chr1_1 exon 9836208 9836376 9836208 ID=Msa0006840-mRNA-1:exon:3516;Parent=Msa0006840-mRNA-1
chr1_1 exon 9836496 9837480 9836496 ID=Msa0006840-mRNA-1:exon:3517;Parent=Msa0006840-mRNA-1
chr1_1 five_prime_UTR 9831084 9831186 9831084 ID=Msa0006840-mRNA-1:five_prime_utr;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9831187 9831288 9831187 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9832234 9832391 9832234 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9832474 9833017 9832474 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9833151 9833300 9833151 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9834118 9834629 9834118 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9834718 9834789 9834718 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9834872 9835055 9834872 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9835136 9835234 9835136 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9835328 9835394 9835328 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9836208 9836376 9836208 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 CDS 9836496 9837051 9836496 ID=Msa0006840-mRNA-1:cds;Parent=Msa0006840-mRNA-1
chr1_1 three_prime_UTR 9837052 9837480 9837052 ID=Msa0006840-mRNA-1:three_prime_utr;Parent=Msa0006840-mRNA-1
Gene Sequence

>Msa0006840

ATGGATTCTCCAGAAGCTTCTAAGATTAAGAGCATTTCTTCCTCTTCTTCTCTCTCCTCAACTCTCAATGCCGCCACCACTGATGAATCCCCCCAAGTTCAAGAATCTCCCTTTTTGAGATTTGTCAACACTCTGTCTCCAATAAAGCCTGTCAAGGCTTCTCATGCGACACATGGGTTTCTCGGACTCAATTCTCCACCTCTCGTATTCAAGTCTCCGCGTATCAGTGCTCCCCACCGTGAAACACAATACTCGGAAAGGCTTGAAGGTACCCATTTATCAGATACAGAAACATCTCAAAGTAACGTAGGAGACAACAGTCTTGGTGAAGCTCGTAGTGATTTGAAGAAATTGAATTCTCAGCAGCCACTGCCAGAGGTGTTTATAACAGTTGCTCAAAAGGATTTTGACCTCAAGAATGATGCGAATACCCAAAGCTGCAGTCCTCCAGCATCCGTCGATGAATATTTGGCTGATCCCGTGGACGATCAAATGTATCCAGTCAACCCAGAAATGGAACAATCTACTGATGCGGTTGGGTCATCATCACTAACTGAGTCGGAGAAAGTTATATTAAAATTTGATAGGAGTGACGGTCCTAGTAACATAGCAGAAGAACTTTTGCCTTTGTTGGAGGAATCTAATATGGTTCATCAAGAAAGGACAACATATGTTGAAAATCCTGCAATAATTGAAGGGGAGAAAAATGGTGCTGAATTGGTTTCTCAAGAGCACATAAACTTAGGCTCGAGTTCAGGTGCAGATGTTTTTGATAAACAATATTGCCATGGTTCACTTCCCCAGTGTGCAGGAAATGATCAACAGCATCAAAGTGACTGTGCACCTCAATTGATGCCTGATCCTATCCAGGCTGTTAAGGAATTTGAAAATTGCAGTGAGATGGTGTCATCCTCACAAGTAAATTCAGAGAATATCCCACAAGATGGTTCTGAGTCAATGCAGGCTAGCCTAAAGTATCATGGCATCCGTAGACGCTGCCTACAATTTGGGGAAGCTGCTTCCGTTGTTCTTGGAAGTAATAAGTCTCATGTGAAATTGAATACAACTTCAAGCAACGCAAAAATGGTTTCTGTGACAGTTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCGTTATAAATGCAATGCCACCTAGTTGTGCTTCAACTACAGGTGTGAGATTATCAGATGGTATACAGGGGTCCAAATCTTCTATAAGTTTGCATATAGTGGAAAACGTGGCAAGATCCTCAACTCCGTCCAATATGGATGATCAATCTTTTATTGATACTAAGAATGAGAGCCATGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCCGAGTCTCCTATCTTGACAGAATCCATCGACCTATATCCGGCAAATGCACCTGATAAGAGGAGGGTACGCCCCACAGATGCTGAGGAATTCAACCATCCTAGCACCTCCAGGAAAAAGAAGAAAACAAGTACTGATGATGCCAATGGACCTAAGACGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTACTGTGATTGTTTTGGTGCTGGAATCTTCTGTGGCGACGGTTGTGCTTGCGAAGGCTGTGGTAACAGAGTAGAATTTCAGGATAAAGTTGTTGAAACAAAACAGCAAATTGAATCCCGTAATCCACAAGCATTTGCTCCCAAGATTGTACCATGTGCAGCTGATGTTCCACTGAATAATATGGAAGATGTGAATATGACAACACCGGCATCAGCTAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGTACAAAAAAATACTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGACTGGATGTCGATGTGATGGATGTATGAATGTCTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCATCTAGCAATGAAAGGGAGAGCAACATTGTTGAAGAAGGGTTGGATGACAAACTGCACAAAAGACAGAAAATTGTGACAATCAGGACAGACTTGTTACGACCAGTAAATCACCTCTCACCTGTAACACCATTGTTGCAATGCTCTGACCAAGGCAAGCAGGGTGCAAAGTCTAGACATACTTCTGCAAATTTGACCAAATCTTCTAAAAAACCACGCAGCAGTCTGGCACATTCGAAGTCGAATGATTCTCAAAAGAATGCACCTACACGTTCTTCATCTACAGAAAATGAGTGGATAGATCTTCCACCATACCAACTCTCCAATAGATGCGGTATTCGCCAGTTATCTGGGGGCTCTCTTCGTTGGCGCGGTAGTTCACCGATTACCCCAAGCGCTAACTTAGATGATGAATCAGATGGTAAGCTCTTTGACATTATAGAAGATGAAACACCTGATGTATTGAAGGAAGCTTCAACTCCCATCAAGTCTGTGAAAGCAAATTCTCCAATCCAAAAGAGAGTTTCTCCTCCACAGAGCCATCTACTTCGGATTGGATCAAGCTCCTCAGGTGGCTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCATTCCCGCCGTTGACCCCTTGCGCTGATTCTAAAGTCCTTTGCAATGGCAATGAGGATTCGGGTAACAGCACAGATAAAGTGACATAA
Protein sequence

>Msa0006840

MDSPEASKIKSISSSSSLSSTLNAATTDESPQVQESPFLRFVNTLSPIKPVKASHATHGFLGLNSPPLVFKSPRISAPHRETQYSERLEGTHLSDTETSQSNVGDNSLGEARSDLKKLNSQQPLPEVFITVAQKDFDLKNDANTQSCSPPASVDEYLADPVDDQMYPVNPEMEQSTDAVGSSSLTESEKVILKFDRSDGPSNIAEELLPLLEESNMVHQERTTYVENPAIIEGEKNGAELVSQEHINLGSSSGADVFDKQYCHGSLPQCAGNDQQHQSDCAPQLMPDPIQAVKEFENCSEMVSSSQVNSENIPQDGSESMQASLKYHGIRRRCLQFGEAASVVLGSNKSHVKLNTTSSNAKMVSVTVSKPPGIGLHLNSVINAMPPSCASTTGVRLSDGIQGSKSSISLHIVENVARSSTPSNMDDQSFIDTKNESHETDASVVADSFISESPILTESIDLYPANAPDKRRVRPTDAEEFNHPSTSRKKKKTSTDDANGPKTCNCKKSKCLKLYCDCFGAGIFCGDGCACEGCGNRVEFQDKVVETKQQIESRNPQAFAPKIVPCAADVPLNNMEDVNMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSTGCRCDGCMNVFGKREDFVAMEHASSNERESNIVEEGLDDKLHKRQKIVTIRTDLLRPVNHLSPVTPLLQCSDQGKQGAKSRHTSANLTKSSKKPRSSLAHSKSNDSQKNAPTRSSSTENEWIDLPPYQLSNRCGIRQLSGGSLRWRGSSPITPSANLDDESDGKLFDIIEDETPDVLKEASTPIKSVKANSPIQKRVSPPQSHLLRIGSSSSGGLKSGRKFILQSVPSFPPLTPCADSKVLCNGNEDSGNSTDKVT*