AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0708980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708980 MtrunA17_Chr8g0383631 99.754 812 2 0 1 812 1 812 0.0 1702
Msa0708980 MtrunA17_Chr3g0079701 93.620 815 38 2 1 812 1 804 0.0 1579
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708980 AT2G21790.1 84.191 816 125 1 1 812 1 816 0.0 1478

Find 247 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTGCCTGATCTCTTTA+TGG 0.175397 4_4:-82800688 Msa0708980:CDS
TGCTGATATATTTGAGTTCT+TGG 0.186515 4_4:-82800890 Msa0708980:CDS
TAAGCAGAGGAGACCTATTT+TGG 0.217017 4_4:+82797890 None:intergenic
GACCTTTCTGCAGTTTCAAC+TGG 0.230257 4_4:+82799748 None:intergenic
ATGTTCATTCAATTACATTT+TGG 0.241206 4_4:-82797915 Msa0708980:three_prime_UTR
TCCCAGATCTATGATTAAAA+TGG 0.249718 4_4:+82801785 None:intergenic
GCAGTTGAGTAGTTGCTTCT+TGG 0.257108 4_4:-82801256 Msa0708980:intron
ATTGAAAATACCTTGCTTAC+AGG 0.257684 4_4:+82799435 None:intergenic
TGTCAAGAGGCGGTTCATTT+TGG 0.263165 4_4:-82797705 Msa0708980:three_prime_UTR
GTGGGATTGGGGTGCACTTC+GGG 0.263837 4_4:-82799217 Msa0708980:CDS
ACCTGGTTTGGCAGATTGTT+GGG 0.280285 4_4:-82800616 Msa0708980:CDS
ATCCAATCAACAATCAAATA+TGG 0.286834 4_4:-82797729 Msa0708980:three_prime_UTR
ACCCATTGGTATTGGAGTTC+AGG 0.293692 4_4:-82799710 Msa0708980:CDS
TAATAATTATCAGAACTGTT+TGG 0.296326 4_4:-82798767 Msa0708980:intron
TCCCTCCAATTTGTGGGATT+GGG 0.296736 4_4:-82799229 Msa0708980:CDS
AATAATTATCAGAACTGTTT+GGG 0.296811 4_4:-82798766 Msa0708980:intron
CTCCCTCCAATTTGTGGGAT+TGG 0.303419 4_4:-82799230 Msa0708980:CDS
TCTTCACGATTTGACTGAAA+TGG 0.304516 4_4:-82798951 Msa0708980:CDS
GGAAATCAAGCAAAAGATAT+TGG 0.306456 4_4:-82798745 Msa0708980:CDS
GCAAAAGATATTGGTTGATA+TGG 0.309843 4_4:-82798736 Msa0708980:CDS
ATTTGATTGTTGATTGGATT+TGG 0.318745 4_4:+82797733 None:intergenic
TCCCGCGAGAATGTGAAAAT+TGG 0.323833 4_4:+82802516 None:intergenic
GAAAAGCAACCAGCAGAATC+TGG 0.327390 4_4:-82800253 Msa0708980:CDS
AAAATTACGGATGCATAATC+AGG 0.331516 4_4:+82802067 None:intergenic
ACTTTCTGAGCGACTAAAAC+AGG 0.342022 4_4:+82802175 None:intergenic
GTGCTTCATTGGGGCAGAAC+AGG 0.346214 4_4:+82800637 None:intergenic
CGGCACAGACCCATTGGTAT+TGG 0.349426 4_4:-82799718 Msa0708980:CDS
TGCACCCCAATCCCACAAAT+TGG 0.350482 4_4:+82799224 None:intergenic
TGGGTGAGTTCCCTCTAAAA+AGG 0.357090 4_4:+82802469 None:intergenic
GTTGAAAATTGAAGTGGAAA+TGG 0.358585 4_4:+82802542 None:intergenic
CACCTGGTTTGGCAGATTGT+TGG 0.366008 4_4:-82800617 Msa0708980:CDS
GCCAAACCAGGTGCTTCATT+GGG 0.366941 4_4:+82800627 None:intergenic
TTGAAGTCACAGATAGAAAC+TGG 0.367181 4_4:-82800407 Msa0708980:CDS
CTTCACGATTTGACTGAAAT+GGG 0.371085 4_4:-82798950 Msa0708980:CDS
ATCCATATTTGATTGTTGAT+TGG 0.373913 4_4:+82797727 None:intergenic
ACTACCGCTATAAGTTTCAT+AGG 0.377693 4_4:+82799458 None:intergenic
TGGAAAGAGTTCAGAGCAAC+GGG 0.378407 4_4:-82800668 Msa0708980:CDS
TGCCAAACCAGGTGCTTCAT+TGG 0.378584 4_4:+82800626 None:intergenic
GCATCTACCAGTCAAATTCT+TGG 0.379695 4_4:-82799138 Msa0708980:CDS
GTTCGATTGTGGATTGGATT+TGG 0.381117 4_4:+82802306 None:intergenic
AGTAAATCTGCAGGAGGAAT+TGG 0.384277 4_4:-82801171 Msa0708980:CDS
TATATGACTTTCAGTTCAAC+AGG 0.388870 4_4:+82798857 None:intergenic
TTGTAGATATTAGAAGTATA+TGG 0.388878 4_4:+82799096 None:intergenic
TCATCTGCCTCCTTCACCTT+AGG 0.389789 4_4:+82798316 None:intergenic
TGACGGCGATGGATTTAGTT+GGG 0.391194 4_4:+82802332 None:intergenic
CCCCAATGAAGCACCTGGTT+TGG 0.394351 4_4:-82800628 Msa0708980:CDS
TGCCATTCCTAGTAGTATAA+AGG 0.395597 4_4:+82799675 None:intergenic
TTCAAATGCCAATCCATACT+TGG 0.397895 4_4:-82798112 Msa0708980:three_prime_UTR
TTGAAAATTGAAGTGGAAAT+GGG 0.405385 4_4:+82802543 None:intergenic
GTGCCCATGGTAGTTACATT+CGG 0.409991 4_4:-82801128 Msa0708980:CDS
GATGGCGTCACTTGCAGCTC+GGG 0.410930 4_4:+82798466 None:intergenic
AGAGAGGTCTTATCTGTTGA+AGG 0.416190 4_4:-82801535 Msa0708980:CDS
CCCATTGGTATTGGAGTTCA+GGG 0.416868 4_4:-82799709 Msa0708980:CDS
TACTGCCCGTTATGTTGATC+AGG 0.419732 4_4:-82801052 Msa0708980:CDS
CTGACGGCGATGGATTTAGT+TGG 0.420058 4_4:+82802331 None:intergenic
GGAAGTAAGCTTTCCAAAGT+TGG 0.423469 4_4:+82798653 None:intergenic
AATGTAATTGAATGAACATT+GGG 0.427132 4_4:+82797919 None:intergenic
TCTTATCTGTTGAAGGTTCA+AGG 0.428310 4_4:-82801528 Msa0708980:CDS
TGTGACTCCCTCCAATTTGT+GGG 0.428684 4_4:-82799235 Msa0708980:CDS
GAAGTAAGCTTTCCAAAGTT+GGG 0.430569 4_4:+82798654 None:intergenic
ACCCACTCACGTTTCAGAAA+AGG 0.433865 4_4:+82801894 None:intergenic
AGATTGAAGATACTTGGTTA+TGG 0.435840 4_4:-82797669 Msa0708980:three_prime_UTR
TATTGGTTCAGTTGGCTGCT+AGG 0.436491 4_4:-82801954 Msa0708980:intron
GGAACAAATGGAACATCTAA+TGG 0.439356 4_4:-82801105 Msa0708980:CDS
TGCCCATGGTAGTTACATTC+GGG 0.439894 4_4:-82801127 Msa0708980:CDS
ATAGTGAGATAATCTATGAT+AGG 0.440293 4_4:-82801593 Msa0708980:CDS
GAAGTTAATTTCCCACGTTA+AGG 0.441872 4_4:+82797810 None:intergenic
CACATGGATAAACCCAACTT+TGG 0.442315 4_4:-82798666 Msa0708980:CDS
CATCTTGTTCGATTGTGGAT+TGG 0.442984 4_4:+82802300 None:intergenic
CGTCACTTGCAGCTCGGGTT+CGG 0.447339 4_4:+82798471 None:intergenic
TAGGTGTTCCAGCGTTGAAA+AGG 0.448993 4_4:+82801376 None:intergenic
CTCATCAGTCTAAGCTTGTT+GGG 0.451276 4_4:-82800002 Msa0708980:CDS
CATGCCTCCTTCATGCCAAC+AGG 0.452475 4_4:+82798191 None:intergenic
CGCTGGAACACCTAGGCCTC+AGG 0.452619 4_4:-82801367 Msa0708980:intron
CCCTCCAATTTGTGGGATTG+GGG 0.452935 4_4:-82799228 Msa0708980:CDS
TCTCATCAGTCTAAGCTTGT+TGG 0.453961 4_4:-82800003 Msa0708980:CDS
TGGAAATGGGTATAAGATGA+TGG 0.455985 4_4:+82802556 None:intergenic
TGGTAGATGCAGTTGGCATA+GGG 0.460342 4_4:+82799151 None:intergenic
GAGTTCAGAGCAACGGGGAA+TGG 0.461034 4_4:-82800662 Msa0708980:CDS
TTGGAATTGAAAATAAATCA+TGG 0.462083 4_4:-82800871 Msa0708980:CDS
GTGTGACTCCCTCCAATTTG+TGG 0.463050 4_4:-82799236 Msa0708980:CDS
AGTTACATTCGGGGAACAAA+TGG 0.464068 4_4:-82801117 Msa0708980:CDS
GAAGATTTCCAAGTATGGAT+TGG 0.466250 4_4:+82798104 None:intergenic
GGTTCATTTCGACAAGATAA+CGG 0.466469 4_4:-82802245 Msa0708980:CDS
TACTATAGGATGCTTGCAAT+AGG 0.466750 4_4:-82800275 Msa0708980:intron
AGGGATTTATGATACATTGA+AGG 0.472331 4_4:-82801208 Msa0708980:CDS
ATAATCTTATTCTTAAGTGC+AGG 0.473123 4_4:+82798917 None:intergenic
GATTTAGAATGCGGCCCGAT+TGG 0.474630 4_4:-82801616 Msa0708980:intron
TCAACAGATAAGACCTCTCT+AGG 0.477274 4_4:+82801538 None:intergenic
AGATTATCTCACTATCCAAT+CGG 0.478302 4_4:+82801601 None:intergenic
TGTGGGATTGGGGTGCACTT+CGG 0.478406 4_4:-82799218 Msa0708980:CDS
AAAATAGGTCTCCTCTGCTT+AGG 0.478626 4_4:-82797888 Msa0708980:three_prime_UTR
ATGAAAGAGGATAGTATTGA+AGG 0.478961 4_4:-82801228 Msa0708980:CDS
TCCTCCCTGATCAACATAAC+GGG 0.482583 4_4:+82801047 None:intergenic
TGATGGCGTCACTTGCAGCT+CGG 0.483188 4_4:+82798465 None:intergenic
CTGGTAGATGCAGTTGGCAT+AGG 0.486502 4_4:+82799150 None:intergenic
TGTGAATTAGCTGCAAAAGA+AGG 0.487389 4_4:-82799483 Msa0708980:CDS
AAGTTCACTGTTGATACCTC+TGG 0.488511 4_4:-82798443 Msa0708980:CDS
ACGTACATCTTGTTCGATTG+TGG 0.489486 4_4:+82802295 None:intergenic
GACCTCAACATATGATAATG+AGG 0.490912 4_4:-82801491 Msa0708980:CDS
GCACACCATCTGTGCCATCT+TGG 0.493955 4_4:+82798279 None:intergenic
ACGGCAAGATTGAAGATACT+TGG 0.495268 4_4:-82797675 Msa0708980:three_prime_UTR
ATTTGCACCTGTTGGCATGA+AGG 0.497330 4_4:-82798198 Msa0708980:three_prime_UTR
AAAGGTGAGATTTGAAAACT+AGG 0.501762 4_4:+82802420 None:intergenic
GGTATCAACAGTGAACTTGA+TGG 0.502624 4_4:+82798448 None:intergenic
TTGCCGTGTACTTGGAGCCA+TGG 0.506004 4_4:-82800915 Msa0708980:CDS
CTACCGCTATAAGTTTCATA+GGG 0.506721 4_4:+82799459 None:intergenic
AAATGTAATTGAATGAACAT+TGG 0.507139 4_4:+82797918 None:intergenic
CCCTGAACTCCAATACCAAT+GGG 0.507374 4_4:+82799709 None:intergenic
GCTGATACCTTTATACTACT+AGG 0.508209 4_4:-82799682 Msa0708980:CDS
TAATTGTGCCCAGATTCTGC+TGG 0.508224 4_4:+82800244 None:intergenic
GGAGTCACACCCCACATGTC+AGG 0.510046 4_4:+82799249 None:intergenic
TTCTGCCCCAATGAAGCACC+TGG 0.511533 4_4:-82800633 Msa0708980:CDS
ATGGGTATAAGATGATGGGT+AGG 0.513624 4_4:+82802561 None:intergenic
ATGATAATGAGGGTTTCTGT+TGG 0.513641 4_4:-82801480 Msa0708980:CDS
ATCATTTCATGTCTCAGAGA+TGG 0.514754 4_4:-82801419 Msa0708980:CDS
ACTCTTTCCATAAAGAGATC+AGG 0.516899 4_4:+82800681 None:intergenic
TTACACACAGCAGTTTCTGT+TGG 0.517348 4_4:+82800180 None:intergenic
CTTCTTGGTGTGTATGAAAG+AGG 0.518124 4_4:-82801241 Msa0708980:CDS
ATCTCTTACATAACGCGGTA+GGG 0.523201 4_4:+82800143 None:intergenic
GTTATTGCCAAGAATTTGAC+TGG 0.525519 4_4:+82799131 None:intergenic
GGTGTAGTTTCAACTTCCAC+AGG 0.525819 4_4:+82798228 None:intergenic
CTCCTCCCTGATCAACATAA+CGG 0.526892 4_4:+82801046 None:intergenic
GATTATCTCACTATCCAATC+GGG 0.527787 4_4:+82801602 None:intergenic
CTTAGTAGATTTGCACCTGT+TGG 0.528081 4_4:-82798206 Msa0708980:three_prime_UTR
GGATTTGGTTCTGACGGCGA+TGG 0.529001 4_4:+82802321 None:intergenic
ACCTTTCTGCAGTTTCAACT+GGG 0.529840 4_4:+82799749 None:intergenic
GTTCCAGCGTTGAAAAGGGT+TGG 0.530421 4_4:+82801381 None:intergenic
CCTGGTTTGGCAGATTGTTG+GGG 0.532035 4_4:-82800615 Msa0708980:CDS
CAACAGGTGCAAATCTACTA+AGG 0.532721 4_4:+82798207 None:intergenic
TGGAAGGTTGAAAATTGAAG+TGG 0.535997 4_4:+82802536 None:intergenic
TGCAATTACTTTAATGCCAG+AGG 0.537941 4_4:+82798427 None:intergenic
AAAAGCAACCAGCAGAATCT+GGG 0.538023 4_4:-82800252 Msa0708980:CDS
TTTGAAAGGGTTTGAAGACT+GGG 0.543205 4_4:-82798505 Msa0708980:intron
TCTAAGCTTGTTGGGAGCAG+AGG 0.544709 4_4:-82799994 Msa0708980:CDS
TGAAAAGGGTTGGAGAAGCA+TGG 0.544864 4_4:+82801391 None:intergenic
GCTTTGTATAGAATTTACTC+TGG 0.545252 4_4:-82798060 Msa0708980:three_prime_UTR
AACTTGCGGCACAGACCCAT+TGG 0.547601 4_4:-82799724 Msa0708980:CDS
AAGGTGAGATTTGAAAACTA+GGG 0.548542 4_4:+82802421 None:intergenic
TAGTGAGATAATCTATGATA+GGG 0.549676 4_4:-82801592 Msa0708980:CDS
TGCATAATCAGGGTGGTTAG+CGG 0.550299 4_4:+82802078 None:intergenic
AGATTGAAGAAACTCAGTTA+CGG 0.550367 4_4:-82802220 Msa0708980:CDS
GGCTAATTCATCAAGTTGAC+TGG 0.551592 4_4:+82802123 None:intergenic
GCTGTTATTAGTAAATCTGC+AGG 0.553103 4_4:-82801180 Msa0708980:CDS
GAATAACGTACCTGAGGCCT+AGG 0.553399 4_4:+82801357 None:intergenic
TGTGTATGAAATTATCATCA+AGG 0.553565 4_4:-82801737 Msa0708980:intron
ACCGCGTTATGTAAGAGATA+AGG 0.553864 4_4:-82800139 Msa0708980:intron
AGGTGTTCCAGCGTTGAAAA+GGG 0.554477 4_4:+82801377 None:intergenic
CCCCAACAATCTGCCAAACC+AGG 0.559209 4_4:+82800615 None:intergenic
CACTTGCAGCTCGGGTTCGG+AGG 0.559794 4_4:+82798474 None:intergenic
TCCCCGAATGTAACTACCAT+GGG 0.561135 4_4:+82801125 None:intergenic
ATTTGACTGGTAGATGCAGT+TGG 0.562931 4_4:+82799144 None:intergenic
AAAGAGATCAGGCACCCAAA+GGG 0.564159 4_4:+82800692 None:intergenic
GGAAATGGGTATAAGATGAT+GGG 0.564438 4_4:+82802557 None:intergenic
GATAATTTCATACACATCAT+CGG 0.564563 4_4:+82801744 None:intergenic
TGGATTGGATTTGGTTCTGA+CGG 0.564711 4_4:+82802315 None:intergenic
TATAAGATGATGGGTAGGGT+AGG 0.565708 4_4:+82802566 None:intergenic
TGCTTCATTGGGGCAGAACA+GGG 0.566323 4_4:+82800638 None:intergenic
GACGGCGATGGATTTAGTTG+GGG 0.568603 4_4:+82802333 None:intergenic
GAAGGTTCAAGGAGTGGTTG+TGG 0.569042 4_4:-82801517 Msa0708980:CDS
TCTGTTGAAGGTTCAAGGAG+TGG 0.569467 4_4:-82801523 Msa0708980:CDS
CGTTATGTTGATCAGGGAGG+AGG 0.570595 4_4:-82801045 Msa0708980:CDS
TGGGTATAAGATGATGGGTA+GGG 0.572932 4_4:+82802562 None:intergenic
TTGTTCAAGCACAGAGTCTG+TGG 0.573288 4_4:-82800439 Msa0708980:CDS
AATTCTTCAGCCTGACATGT+GGG 0.573350 4_4:-82799259 Msa0708980:CDS
TATCTCTTACATAACGCGGT+AGG 0.575221 4_4:+82800142 None:intergenic
TGAAAGAGGATAGTATTGAA+GGG 0.576753 4_4:-82801227 Msa0708980:CDS
ATGGAAAGAGTTCAGAGCAA+CGG 0.576870 4_4:-82800669 Msa0708980:CDS
GTTTGTGCCGGCGTTTACAA+AGG 0.577884 4_4:-82802154 Msa0708980:CDS
TCTTATATAGGGTTTACCTG+TGG 0.579223 4_4:-82800028 Msa0708980:intron
GTCGCTCAGAAAGTTTGTGC+CGG 0.580015 4_4:-82802166 Msa0708980:CDS
ACCCCAATCCCACAAATTGG+AGG 0.580755 4_4:+82799227 None:intergenic
CAGGGAGGAGGCAAGAGGAA+AGG 0.580785 4_4:-82801033 Msa0708980:intron
GGTGAAGGAGGCAGATGATG+AGG 0.581346 4_4:-82798311 Msa0708980:CDS
ATTGAAAATAAATCATGGAA+AGG 0.581359 4_4:-82800866 Msa0708980:intron
ACCCTGAACTCCAATACCAA+TGG 0.583702 4_4:+82799708 None:intergenic
AGGGTGGTTAGCGGTCATGC+CGG 0.585896 4_4:+82802087 None:intergenic
CGGGAGATGATATCAAAGAC+AGG 0.587167 4_4:-82799198 Msa0708980:CDS
ATGTACGTTGTGAAGAGAGA+TGG 0.587284 4_4:-82802280 Msa0708980:CDS
TCTACAATCGCAGAGTGCTA+AGG 0.589399 4_4:-82799080 Msa0708980:intron
TACCTTTATACTACTAGGAA+TGG 0.591337 4_4:-82799677 Msa0708980:CDS
TGCACCTGTTGGCATGAAGG+AGG 0.592841 4_4:-82798195 Msa0708980:three_prime_UTR
GTAGGATCAACCTAAGGTGA+AGG 0.596969 4_4:-82798326 Msa0708980:intron
GAAAAGGGTTGGAGAAGCAT+GGG 0.598289 4_4:+82801392 None:intergenic
AATAAGATTATCTATGACAA+CGG 0.602344 4_4:-82798905 Msa0708980:CDS
CATGCCGGCAGCAGTTTCAG+CGG 0.602689 4_4:+82802102 None:intergenic
CCCCAATCCCACAAATTGGA+GGG 0.603150 4_4:+82799228 None:intergenic
AATTATGATTGTAAAACAGT+GGG 0.603255 4_4:+82802450 None:intergenic
ACCCTCATTATCATATGTTG+AGG 0.604412 4_4:+82801489 None:intergenic
TACACATCATCGGCAATCAA+CGG 0.608688 4_4:+82801754 None:intergenic
TAAAGAGATCAGGCACCCAA+AGG 0.610062 4_4:+82800691 None:intergenic
CAACAGATAAGACCTCTCTA+GGG 0.610108 4_4:+82801539 None:intergenic
TCATTGAACACACGCAGCAT+CGG 0.611592 4_4:+82801075 None:intergenic
GTTCACAACATACGTGCCCA+TGG 0.612170 4_4:-82801141 Msa0708980:CDS
GAATTCTTCAGCCTGACATG+TGG 0.613737 4_4:-82799260 Msa0708980:CDS
GGAGCAGAGGCTCTAGTAGT+CGG 0.613742 4_4:-82799981 Msa0708980:CDS
TAGCGGTAGTCCTGTAAGCA+AGG 0.613907 4_4:-82799445 Msa0708980:intron
ATGCCATGGCTCCAAGTACA+CGG 0.616372 4_4:+82800912 None:intergenic
ACCCAGTTGAAACTGCAGAA+AGG 0.616552 4_4:-82799750 Msa0708980:CDS
GGTTTCTGTTGGAATTCACA+AGG 0.619618 4_4:-82801469 Msa0708980:CDS
TTCCCCGAATGTAACTACCA+TGG 0.622260 4_4:+82801124 None:intergenic
GATGTATTTGTAGTAGTGAA+AGG 0.622359 4_4:+82802402 None:intergenic
ACTGCCCGTTATGTTGATCA+GGG 0.623349 4_4:-82801051 Msa0708980:CDS
GATGATGGGTAGGGTAGGTG+AGG 0.624334 4_4:+82802571 None:intergenic
ATTCTTCAGCCTGACATGTG+GGG 0.624402 4_4:-82799258 Msa0708980:CDS
TTAGACTGATGAGACTCCAC+AGG 0.628766 4_4:+82800012 None:intergenic
TTGGGTTCAAAACCCTAGAG+AGG 0.628996 4_4:-82801551 Msa0708980:CDS
GCGAGAATGTGAAAATTGGA+AGG 0.629011 4_4:+82802520 None:intergenic
TAATTATGATTGTAAAACAG+TGG 0.631782 4_4:+82802449 None:intergenic
ACCTCAACATATGATAATGA+GGG 0.634892 4_4:-82801490 Msa0708980:CDS
TTAGCCGCTGAAACTGCTGC+CGG 0.635948 4_4:-82802106 Msa0708980:CDS
CCAAACCAGGTGCTTCATTG+GGG 0.636999 4_4:+82800628 None:intergenic
AAATTACGGATGCATAATCA+GGG 0.637639 4_4:+82802068 None:intergenic
CTTTCTGAGCGACTAAAACA+GGG 0.637721 4_4:+82802176 None:intergenic
CTGCAGAAAGGTCAAACTTG+CGG 0.641053 4_4:-82799738 Msa0708980:CDS
AATCAAATATGGATGTCAAG+AGG 0.641382 4_4:-82797718 Msa0708980:three_prime_UTR
GAAGAGAGATGGTCGTCAAG+AGG 0.642493 4_4:-82802269 Msa0708980:CDS
GGATCAACCTAAGGTGAAGG+AGG 0.643379 4_4:-82798323 Msa0708980:CDS
GGTAGATGCAGTTGGCATAG+GGG 0.644273 4_4:+82799152 None:intergenic
TGATACCAAGATGGCACAGA+TGG 0.648530 4_4:-82798284 Msa0708980:CDS
AGCATAGGCAAACCTTAACG+TGG 0.650290 4_4:-82797822 Msa0708980:three_prime_UTR
TCAAATATATCAGCATGCCA+TGG 0.653122 4_4:+82800898 None:intergenic
GTTATTAGTAAATCTGCAGG+AGG 0.654429 4_4:-82801177 Msa0708980:CDS
TTGATCAGGGAGGAGGCAAG+AGG 0.655422 4_4:-82801038 Msa0708980:CDS
GAGAGATGGTCGTCAAGAGG+CGG 0.656772 4_4:-82802266 Msa0708980:CDS
GTTGATATGGCTGTTGATCG+AGG 0.657853 4_4:-82798723 Msa0708980:CDS
GACAAACAGAGACGAGTGTG+AGG 0.658465 4_4:-82798251 Msa0708980:CDS
GCGGTAGGGCAATTGATGCA+AGG 0.660696 4_4:+82800157 None:intergenic
TAATTCATCAAGTTGACTGG+TGG 0.662193 4_4:+82802126 None:intergenic
AGAGACGAGTGTGAGGCCTG+TGG 0.669541 4_4:-82798244 Msa0708980:CDS
CAAATATGGATGTCAAGAGG+CGG 0.674810 4_4:-82797715 Msa0708980:three_prime_UTR
AATGGCATTTGATTCACCAG+AGG 0.676603 4_4:-82799659 Msa0708980:intron
TGAGGATGATGATACCAAGA+TGG 0.681385 4_4:-82798293 Msa0708980:CDS
ACCTTATCTCTTACATAACG+CGG 0.684486 4_4:+82800138 None:intergenic
TCAAAGTTTAAATATACACA+TGG 0.684728 4_4:-82798682 Msa0708980:CDS
GTGAATGTAGGATCAACCTA+AGG 0.689066 4_4:-82798332 Msa0708980:intron
GCATAGGCAAACCTTAACGT+GGG 0.692303 4_4:-82797821 Msa0708980:three_prime_UTR
GGTAACGCCTTTGTAAACGC+CGG 0.692435 4_4:+82802147 None:intergenic
CTAATGACAGGTTACTGCTG+TGG 0.697818 4_4:-82799812 Msa0708980:intron
GCAGGCTCAACAGTTAAACA+AGG 0.698840 4_4:-82799547 Msa0708980:intron
GCCCATGGTAGTTACATTCG+GGG 0.698966 4_4:-82801126 Msa0708980:CDS
GCCCGTTATGTTGATCAGGG+AGG 0.705919 4_4:-82801048 Msa0708980:CDS
GGCCCCTATGAAACTTATAG+CGG 0.706024 4_4:-82799462 Msa0708980:CDS
ATTTGACTGAAATGGGACTG+TGG 0.706027 4_4:-82798943 Msa0708980:CDS
TACCGCTATAAGTTTCATAG+GGG 0.734200 4_4:+82799460 None:intergenic
TTACGGATGCATAATCAGGG+TGG 0.757818 4_4:+82802071 None:intergenic
GGAAAGAGTTCAGAGCAACG+GGG 0.791990 4_4:-82800667 Msa0708980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTGTTATTATACTAT+AGG - chr4_4:82799930-82799949 Msa0708980:intron 10.0%
!! TAAATAATGTTTATGTTTAT+GGG - chr4_4:82800583-82800602 Msa0708980:CDS 10.0%
!!! AATTGTTTAAGATTTGAAAT+GGG - chr4_4:82798519-82798538 Msa0708980:intron 15.0%
!!! TGAAATTCATTTTTTGATTT+TGG - chr4_4:82798574-82798593 Msa0708980:intron 15.0%
!!! GAAATTCATTTTTTGATTTT+GGG - chr4_4:82798575-82798594 Msa0708980:intron 15.0%
!! AAACTTGTATAAAGTTAAAA+AGG + chr4_4:82799882-82799901 None:intergenic 15.0%
!! TATACAAGTTAAGAATTAAA+AGG + chr4_4:82799910-82799929 None:intergenic 15.0%
!!! TTTTTATTTGCTTCTTATAT+AGG - chr4_4:82800179-82800198 Msa0708980:CDS 15.0%
!!! TTTTATTTGCTTCTTATATA+GGG - chr4_4:82800180-82800199 Msa0708980:CDS 15.0%
!! GTAAATAATGTTTATGTTTA+TGG - chr4_4:82800582-82800601 Msa0708980:CDS 15.0%
!! AAATAATGTTTATGTTTATG+GGG - chr4_4:82800584-82800603 Msa0708980:CDS 15.0%
!! AATTATGATTGTAAAACAGT+GGG + chr4_4:82797772-82797791 None:intergenic 20.0%
!! TAATTATGATTGTAAAACAG+TGG + chr4_4:82797773-82797792 None:intergenic 20.0%
!! AACAACAAAAAATTCATCAT+CGG + chr4_4:82798221-82798240 None:intergenic 20.0%
!!! TGAATTGTTTTCGATTTTAT+TGG - chr4_4:82798248-82798267 Msa0708980:CDS 20.0%
!!! GATTTTTTTTTTCAGTGTTA+AGG - chr4_4:82798401-82798420 Msa0708980:intron 20.0%
!!! CAATTGTTTAAGATTTGAAA+TGG - chr4_4:82798518-82798537 Msa0708980:intron 20.0%
!!! ATTTTGACTATGATTACTTT+GGG - chr4_4:82798650-82798669 Msa0708980:CDS 20.0%
!!! TGTGAATTTTGAATCTTATT+TGG - chr4_4:82798918-82798937 Msa0708980:CDS 20.0%
!! TTGGAATTGAAAATAAATCA+TGG - chr4_4:82799348-82799367 Msa0708980:intron 20.0%
!! ATTGAAAATAAATCATGGAA+AGG - chr4_4:82799353-82799372 Msa0708980:intron 20.0%
!! TAAAATAGACAAATTTCAAC+TGG + chr4_4:82799444-82799463 None:intergenic 20.0%
!! GCAAATAAAAATTCAAAATC+AGG + chr4_4:82800170-82800189 None:intergenic 20.0%
!!! TATTTTGACTTTGAAAAACT+GGG - chr4_4:82800261-82800280 Msa0708980:CDS 20.0%
!! AAAAATAACTATTACACAAG+TGG + chr4_4:82800382-82800401 None:intergenic 20.0%
!!! TATTTTTTGTAACTAATGAC+AGG - chr4_4:82800395-82800414 Msa0708980:CDS 20.0%
!!! ATCGATTATTTTATTAAGGT+TGG + chr4_4:82800439-82800458 None:intergenic 20.0%
!!! TGACATCGATTATTTTATTA+AGG + chr4_4:82800443-82800462 None:intergenic 20.0%
!!! TTGTAGATATTAGAAGTATA+TGG + chr4_4:82801126-82801145 None:intergenic 20.0%
!! AATAAGATTATCTATGACAA+CGG - chr4_4:82801314-82801333 Msa0708980:intron 20.0%
!!! AGTTCTGATAATTATTAAGA+GGG + chr4_4:82801449-82801468 None:intergenic 20.0%
!! TAATAATTATCAGAACTGTT+TGG - chr4_4:82801452-82801471 Msa0708980:CDS 20.0%
!! AATAATTATCAGAACTGTTT+GGG - chr4_4:82801453-82801472 Msa0708980:CDS 20.0%
!! TCAAAGTTTAAATATACACA+TGG - chr4_4:82801537-82801556 Msa0708980:CDS 20.0%
!! AATGTAATTGAATGAACATT+GGG + chr4_4:82802303-82802322 None:intergenic 20.0%
!! AAATGTAATTGAATGAACAT+TGG + chr4_4:82802304-82802323 None:intergenic 20.0%
!!! ATGTTCATTCAATTACATTT+TGG - chr4_4:82802304-82802323 Msa0708980:five_prime_UTR 20.0%
!!! ATTACAACTTAAAAAAGCAT+AGG - chr4_4:82802382-82802401 Msa0708980:five_prime_UTR 20.0%
! TTGAAAATTGAAGTGGAAAT+GGG + chr4_4:82797679-82797698 None:intergenic 25.0%
!!! AACCATTTTAATCATAGATC+TGG - chr4_4:82798432-82798451 Msa0708980:intron 25.0%
!!! ACCATTTTAATCATAGATCT+GGG - chr4_4:82798433-82798452 Msa0708980:intron 25.0%
! GATAATTTCATACACATCAT+CGG + chr4_4:82798478-82798497 None:intergenic 25.0%
! TGTGTATGAAATTATCATCA+AGG - chr4_4:82798482-82798501 Msa0708980:CDS 25.0%
!!! AAGATTTGAAATGGGTTTTT+AGG - chr4_4:82798527-82798546 Msa0708980:intron 25.0%
! ATAGTGAGATAATCTATGAT+AGG - chr4_4:82798626-82798645 Msa0708980:intron 25.0%
! TAGTGAGATAATCTATGATA+GGG - chr4_4:82798627-82798646 Msa0708980:intron 25.0%
!!! GATTTTGACTATGATTACTT+TGG - chr4_4:82798649-82798668 Msa0708980:CDS 25.0%
!!! AAACCATTTTGTGATTTGTT+TGG - chr4_4:82799210-82799229 Msa0708980:CDS 25.0%
! ATTCCAAACAAATCACAAAA+TGG + chr4_4:82799216-82799235 None:intergenic 25.0%
!! TTATTTTCTATCAAATCCAC+AGG - chr4_4:82799742-82799761 Msa0708980:CDS 25.0%
!! TATTTTCTATCAAATCCACA+GGG - chr4_4:82799743-82799762 Msa0708980:CDS 25.0%
!!! AAATCCTTACATGCTTTTTA+AGG - chr4_4:82799835-82799854 Msa0708980:intron 25.0%
!!! GTATTTTGACTTTGAAAAAC+TGG - chr4_4:82800260-82800279 Msa0708980:CDS 25.0%
!!! CTTTTTAACTACAACTGATA+CGG - chr4_4:82800296-82800315 Msa0708980:intron 25.0%
!!! TTTTTAACTACAACTGATAC+GGG - chr4_4:82800297-82800316 Msa0708980:intron 25.0%
! ACATAAACATTATTTACCTC+TGG + chr4_4:82800579-82800598 None:intergenic 25.0%
!! TTTGATAGTTTACTTGGATA+TGG - chr4_4:82800646-82800665 Msa0708980:CDS 25.0%
! TTAAATATACATGTGCAACT+GGG + chr4_4:82800851-82800870 None:intergenic 25.0%
! ATAATCTTATTCTTAAGTGC+AGG + chr4_4:82801305-82801324 None:intergenic 25.0%
!! CAGTTCTGATAATTATTAAG+AGG + chr4_4:82801450-82801469 None:intergenic 25.0%
! TCTCTTACTAAATCTATTGA+TGG - chr4_4:82801659-82801678 Msa0708980:intron 25.0%
! CTCTTACTAAATCTATTGAT+GGG - chr4_4:82801660-82801679 Msa0708980:intron 25.0%
! TCTTACTAAATCTATTGATG+GGG - chr4_4:82801661-82801680 Msa0708980:intron 25.0%
! AACAAAATAGAGAGTGATAT+TGG + chr4_4:82801695-82801714 None:intergenic 25.0%
!!! ACTCTCTATTTTGTTTTGAA+AGG - chr4_4:82801700-82801719 Msa0708980:intron 25.0%
!!! CTCTCTATTTTGTTTTGAAA+GGG - chr4_4:82801701-82801720 Msa0708980:intron 25.0%
!!! ATTTTGAAGATTTCCAAGTA+TGG + chr4_4:82802123-82802142 None:intergenic 25.0%
!!! TTACATTTTGGTACCAAAAT+AGG - chr4_4:82802316-82802335 Msa0708980:five_prime_UTR 25.0%
!! ATTTGATTGTTGATTGGATT+TGG + chr4_4:82802489-82802508 None:intergenic 25.0%
! ATCCAATCAACAATCAAATA+TGG - chr4_4:82802490-82802509 Msa0708980:five_prime_UTR 25.0%
! ATCCATATTTGATTGTTGAT+TGG + chr4_4:82802495-82802514 None:intergenic 25.0%
GTTGAAAATTGAAGTGGAAA+TGG + chr4_4:82797680-82797699 None:intergenic 30.0%
AAGGTGAGATTTGAAAACTA+GGG + chr4_4:82797801-82797820 None:intergenic 30.0%
AAAGGTGAGATTTGAAAACT+AGG + chr4_4:82797802-82797821 None:intergenic 30.0%
GATGTATTTGTAGTAGTGAA+AGG + chr4_4:82797820-82797839 None:intergenic 30.0%
AGATTGAAGAAACTCAGTTA+CGG - chr4_4:82797999-82798018 Msa0708980:three_prime_UTR 30.0%
AAATTACGGATGCATAATCA+GGG + chr4_4:82798154-82798173 None:intergenic 30.0%
AAAATTACGGATGCATAATC+AGG + chr4_4:82798155-82798174 None:intergenic 30.0%
!!! TTCGATTTTATTGGTTCAGT+TGG - chr4_4:82798257-82798276 Msa0708980:CDS 30.0%
TCCCAGATCTATGATTAAAA+TGG + chr4_4:82798437-82798456 None:intergenic 30.0%
!!! TGAAATGGGTTTTTAGGTTT+TGG - chr4_4:82798533-82798552 Msa0708980:intron 30.0%
!!! TGGGTTTTTGATTTAGAATG+CGG - chr4_4:82798594-82798613 Msa0708980:intron 30.0%
AGATTATCTCACTATCCAAT+CGG + chr4_4:82798621-82798640 None:intergenic 30.0%
! ACCTCAACATATGATAATGA+GGG - chr4_4:82798729-82798748 Msa0708980:CDS 30.0%
! ATGAAAGAGGATAGTATTGA+AGG - chr4_4:82798991-82799010 Msa0708980:intron 30.0%
! TGAAAGAGGATAGTATTGAA+GGG - chr4_4:82798992-82799011 Msa0708980:intron 30.0%
AGGGATTTATGATACATTGA+AGG - chr4_4:82799011-82799030 Msa0708980:intron 30.0%
AACAAGTGTTCATCTAATTG+AGG + chr4_4:82799240-82799259 None:intergenic 30.0%
! TGCTGATATATTTGAGTTCT+TGG - chr4_4:82799329-82799348 Msa0708980:intron 30.0%
!!! AGATTTATTTTACGCCCTTT+GGG - chr4_4:82799513-82799532 Msa0708980:CDS 30.0%
GTATGAAAAAGCAGTAAGTT+TGG - chr4_4:82799654-82799673 Msa0708980:intron 30.0%
!! CTGGTTGTTTTGTATATTTC+CGG - chr4_4:82799688-82799707 Msa0708980:CDS 30.0%
!! TTGTTTTGTATATTTCCGGA+AGG - chr4_4:82799692-82799711 Msa0708980:CDS 30.0%
TGACAGAAATCAAACAAACT+CGG + chr4_4:82800137-82800156 None:intergenic 30.0%
!! TTTTAACTACAACTGATACG+GGG - chr4_4:82800298-82800317 Msa0708980:intron 30.0%
TACCTTTATACTACTAGGAA+TGG - chr4_4:82800542-82800561 Msa0708980:intron 30.0%
! CTCTGATTTGATAGTTTACT+TGG - chr4_4:82800640-82800659 Msa0708980:CDS 30.0%
ATTGAAAATACCTTGCTTAC+AGG + chr4_4:82800787-82800806 None:intergenic 30.0%
GTTAAATATACATGTGCAAC+TGG + chr4_4:82800852-82800871 None:intergenic 30.0%
CAACATATAATGACATGGTA+TGG + chr4_4:82801172-82801191 None:intergenic 30.0%
CATACCATGTCATTATATGT+TGG - chr4_4:82801170-82801189 Msa0708980:CDS 30.0%
GATACCAACATATAATGACA+TGG + chr4_4:82801177-82801196 None:intergenic 30.0%
TGAAAGACAAACAGTTAACA+AGG + chr4_4:82801217-82801236 None:intergenic 30.0%
TATATGACTTTCAGTTCAAC+AGG + chr4_4:82801365-82801384 None:intergenic 30.0%
GGAAATCAAGCAAAAGATAT+TGG - chr4_4:82801474-82801493 Msa0708980:CDS 30.0%
! GCAAAAGATATTGGTTGATA+TGG - chr4_4:82801483-82801502 Msa0708980:CDS 30.0%
!! TGTTTTCTTGTTGTGAATGT+AGG - chr4_4:82801875-82801894 Msa0708980:intron 30.0%
GCTTTGTATAGAATTTACTC+TGG - chr4_4:82802159-82802178 Msa0708980:CDS 30.0%
AATCAAATATGGATGTCAAG+AGG - chr4_4:82802501-82802520 Msa0708980:five_prime_UTR 30.0%
AGATTGAAGATACTTGGTTA+TGG - chr4_4:82802550-82802569 Msa0708980:five_prime_UTR 30.0%
GGAAATGGGTATAAGATGAT+GGG + chr4_4:82797665-82797684 None:intergenic 35.0%
TGGAAATGGGTATAAGATGA+TGG + chr4_4:82797666-82797685 None:intergenic 35.0%
TGGAAGGTTGAAAATTGAAG+TGG + chr4_4:82797686-82797705 None:intergenic 35.0%
! TTCCAATTTTCACATTCTCG+CGG - chr4_4:82797701-82797720 Msa0708980:three_prime_UTR 35.0%
! GGAATTTTATCGAACGGTTT+TGG + chr4_4:82797868-82797887 None:intergenic 35.0%
! AGTTGGGGAATTTTATCGAA+CGG + chr4_4:82797874-82797893 None:intergenic 35.0%
GGTTCATTTCGACAAGATAA+CGG - chr4_4:82797974-82797993 Msa0708980:three_prime_UTR 35.0%
!! TAATTCATCAAGTTGACTGG+TGG + chr4_4:82798096-82798115 None:intergenic 35.0%
GAAAAAAGGCGGGAAAATTA+CGG + chr4_4:82798168-82798187 None:intergenic 35.0%
AAGCAGAGGAAAACGAAAAA+AGG + chr4_4:82798182-82798201 None:intergenic 35.0%
AAGATAACGTTATGAAGCAG+AGG + chr4_4:82798196-82798215 None:intergenic 35.0%
GATTATCTCACTATCCAATC+GGG + chr4_4:82798620-82798639 None:intergenic 35.0%
TCTTATCTGTTGAAGGTTCA+AGG - chr4_4:82798691-82798710 Msa0708980:CDS 35.0%
! GACCTCAACATATGATAATG+AGG - chr4_4:82798728-82798747 Msa0708980:CDS 35.0%
ACCCTCATTATCATATGTTG+AGG + chr4_4:82798733-82798752 None:intergenic 35.0%
! ATGATAATGAGGGTTTCTGT+TGG - chr4_4:82798739-82798758 Msa0708980:CDS 35.0%
ATCATTTCATGTCTCAGAGA+TGG - chr4_4:82798800-82798819 Msa0708980:intron 35.0%
GCTGTTATTAGTAAATCTGC+AGG - chr4_4:82799039-82799058 Msa0708980:intron 35.0%
GTTATTAGTAAATCTGCAGG+AGG - chr4_4:82799042-82799061 Msa0708980:intron 35.0%
GGAACAAATGGAACATCTAA+TGG - chr4_4:82799114-82799133 Msa0708980:CDS 35.0%
GTGTGTTATGTGATTGTTGT+AGG - chr4_4:82799276-82799295 Msa0708980:intron 35.0%
TCAAATATATCAGCATGCCA+TGG + chr4_4:82799324-82799343 None:intergenic 35.0%
! AATCATGGAAAGGTATGAAG+TGG - chr4_4:82799363-82799382 Msa0708980:intron 35.0%
CTGGCATATACTAAGATCTA+GGG + chr4_4:82799425-82799444 None:intergenic 35.0%
ACTGGCATATACTAAGATCT+AGG + chr4_4:82799426-82799445 None:intergenic 35.0%
!!! GAGATTTATTTTACGCCCTT+TGG - chr4_4:82799512-82799531 Msa0708980:CDS 35.0%
ACTCTTTCCATAAAGAGATC+AGG + chr4_4:82799541-82799560 None:intergenic 35.0%
CGGAAATATACAAAACAACC+AGG + chr4_4:82799690-82799709 None:intergenic 35.0%
!!! ATCTTTTTTGCTTTTCCCTG+TGG + chr4_4:82799761-82799780 None:intergenic 35.0%
TTGAAGTCACAGATAGAAAC+TGG - chr4_4:82799812-82799831 Msa0708980:intron 35.0%
!! TCCTTACATGCTTTTTAAGG+TGG - chr4_4:82799838-82799857 Msa0708980:intron 35.0%
! ACCACCTTAAAAAGCATGTA+AGG + chr4_4:82799842-82799861 None:intergenic 35.0%
TACTATAGGATGCTTGCAAT+AGG - chr4_4:82799944-82799963 Msa0708980:intron 35.0%
ACCTTATCTCTTACATAACG+CGG + chr4_4:82800084-82800103 None:intergenic 35.0%
GACAGAAATCAAACAAACTC+GGG + chr4_4:82800136-82800155 None:intergenic 35.0%
TCTTATATAGGGTTTACCTG+TGG - chr4_4:82800191-82800210 Msa0708980:CDS 35.0%
! GGTCATATAGTGATAGTGTA+AGG + chr4_4:82800361-82800380 None:intergenic 35.0%
GCTGATACCTTTATACTACT+AGG - chr4_4:82800537-82800556 Msa0708980:intron 35.0%
TGCCATTCCTAGTAGTATAA+AGG + chr4_4:82800547-82800566 None:intergenic 35.0%
TGTGAATTAGCTGCAAAAGA+AGG - chr4_4:82800736-82800755 Msa0708980:intron 35.0%
TACCGCTATAAGTTTCATAG+GGG + chr4_4:82800762-82800781 None:intergenic 35.0%
CTACCGCTATAAGTTTCATA+GGG + chr4_4:82800763-82800782 None:intergenic 35.0%
ACTACCGCTATAAGTTTCAT+AGG + chr4_4:82800764-82800783 None:intergenic 35.0%
!! AGCAAGGTATTTTCAATCAG+TGG - chr4_4:82800790-82800809 Msa0708980:intron 35.0%
CTTTCCTTACCCTTCTATTA+TGG - chr4_4:82800818-82800837 Msa0708980:intron 35.0%
CTAAAGATCCAAGATGTTTG+TGG - chr4_4:82800907-82800926 Msa0708980:CDS 35.0%
AGGTGATTATCTATATGTGC+AGG - chr4_4:82800936-82800955 Msa0708980:intron 35.0%
GGTGATTATCTATATGTGCA+GGG - chr4_4:82800937-82800956 Msa0708980:intron 35.0%
GTTATTGCCAAGAATTTGAC+TGG + chr4_4:82801091-82801110 None:intergenic 35.0%
GTTAACTGTTTGTCTTTCAG+TGG - chr4_4:82801218-82801237 Msa0708980:CDS 35.0%
TCTTCACGATTTGACTGAAA+TGG - chr4_4:82801268-82801287 Msa0708980:intron 35.0%
CTTCACGATTTGACTGAAAT+GGG - chr4_4:82801269-82801288 Msa0708980:intron 35.0%
ATTAGAGTCAAGTTTGTGTC+AGG + chr4_4:82801413-82801432 None:intergenic 35.0%
GAAGTAAGCTTTCCAAAGTT+GGG + chr4_4:82801568-82801587 None:intergenic 35.0%
! CTTCCTTGCATTTTTATGCT+TGG - chr4_4:82801584-82801603 Msa0708980:CDS 35.0%
TGACCAAGCATAAAAATGCA+AGG + chr4_4:82801590-82801609 None:intergenic 35.0%
! GCATTTTTATGCTTGGTCAA+AGG - chr4_4:82801591-82801610 Msa0708980:CDS 35.0%
!! TTTTGAAAGGGTTTGAAGAC+TGG - chr4_4:82801713-82801732 Msa0708980:intron 35.0%
TTTGAAAGGGTTTGAAGACT+GGG - chr4_4:82801714-82801733 Msa0708980:intron 35.0%
TGCAATTACTTTAATGCCAG+AGG + chr4_4:82801795-82801814 None:intergenic 35.0%
CAAACGACAAATCACATGAA+CGG + chr4_4:82801838-82801857 None:intergenic 35.0%
TTCAAATGCCAATCCATACT+TGG - chr4_4:82802107-82802126 Msa0708980:CDS 35.0%
GAAGATTTCCAAGTATGGAT+TGG + chr4_4:82802118-82802137 None:intergenic 35.0%
! TTGTTGTATTGCGTGCTTTT+AGG - chr4_4:82802218-82802237 Msa0708980:CDS 35.0%
! AATTTTGTCATCCTAAGCAG+AGG + chr4_4:82802345-82802364 None:intergenic 35.0%
GAAGTTAATTTCCCACGTTA+AGG + chr4_4:82802412-82802431 None:intergenic 35.0%
!! GGTTCATTTTGGCAAGATAA+CGG - chr4_4:82802525-82802544 Msa0708980:five_prime_UTR 35.0%
!! TATAAGATGATGGGTAGGGT+AGG + chr4_4:82797656-82797675 None:intergenic 40.0%
!! TGGGTATAAGATGATGGGTA+GGG + chr4_4:82797660-82797679 None:intergenic 40.0%
!! ATGGGTATAAGATGATGGGT+AGG + chr4_4:82797661-82797680 None:intergenic 40.0%
GCGAGAATGTGAAAATTGGA+AGG + chr4_4:82797702-82797721 None:intergenic 40.0%
! TCCAATTTTCACATTCTCGC+GGG - chr4_4:82797702-82797721 Msa0708980:three_prime_UTR 40.0%
! AAAACCCCACCCTTTTTAGA+GGG - chr4_4:82797740-82797759 Msa0708980:three_prime_UTR 40.0%
!! TGGATTGGATTTGGTTCTGA+CGG + chr4_4:82797907-82797926 None:intergenic 40.0%
!! GTTCGATTGTGGATTGGATT+TGG + chr4_4:82797916-82797935 None:intergenic 40.0%
CATCTTGTTCGATTGTGGAT+TGG + chr4_4:82797922-82797941 None:intergenic 40.0%
ACGTACATCTTGTTCGATTG+TGG + chr4_4:82797927-82797946 None:intergenic 40.0%
ATGTACGTTGTGAAGAGAGA+TGG - chr4_4:82797939-82797958 Msa0708980:three_prime_UTR 40.0%
CTTTCTGAGCGACTAAAACA+GGG + chr4_4:82798046-82798065 None:intergenic 40.0%
ACTTTCTGAGCGACTAAAAC+AGG + chr4_4:82798047-82798066 None:intergenic 40.0%
!! GGCTAATTCATCAAGTTGAC+TGG + chr4_4:82798099-82798118 None:intergenic 40.0%
AGAGGAAAACGAAAAAAGGC+GGG + chr4_4:82798178-82798197 None:intergenic 40.0%
CAGAGGAAAACGAAAAAAGG+CGG + chr4_4:82798179-82798198 None:intergenic 40.0%
!!! ATCCTTTTCTGAAACGTGAG+TGG - chr4_4:82798323-82798342 Msa0708980:CDS 40.0%
!!! TCCTTTTCTGAAACGTGAGT+GGG - chr4_4:82798324-82798343 Msa0708980:CDS 40.0%
TACACATCATCGGCAATCAA+CGG + chr4_4:82798468-82798487 None:intergenic 40.0%
CAACAGATAAGACCTCTCTA+GGG + chr4_4:82798683-82798702 None:intergenic 40.0%
TCAACAGATAAGACCTCTCT+AGG + chr4_4:82798684-82798703 None:intergenic 40.0%
! AGAGAGGTCTTATCTGTTGA+AGG - chr4_4:82798684-82798703 Msa0708980:CDS 40.0%
GGTTTCTGTTGGAATTCACA+AGG - chr4_4:82798750-82798769 Msa0708980:CDS 40.0%
! CTTCTTGGTGTGTATGAAAG+AGG - chr4_4:82798978-82798997 Msa0708980:CDS 40.0%
AGTAAATCTGCAGGAGGAAT+TGG - chr4_4:82799048-82799067 Msa0708980:intron 40.0%
AGTTACATTCGGGGAACAAA+TGG - chr4_4:82799102-82799121 Msa0708980:CDS 40.0%
CCTACATAGGTAACACATCA+AGG + chr4_4:82799477-82799496 None:intergenic 40.0%
CCTTGATGTGTTACCTATGT+AGG - chr4_4:82799474-82799493 Msa0708980:CDS 40.0%
ATGGAAAGAGTTCAGAGCAA+CGG - chr4_4:82799550-82799569 Msa0708980:intron 40.0%
!! AAGTTTGGTCTTGATAAGCC+TGG - chr4_4:82799669-82799688 Msa0708980:CDS 40.0%
CAGTAAAAGAGACATCCTTC+CGG + chr4_4:82799710-82799729 None:intergenic 40.0%
AAAAGCAACCAGCAGAATCT+GGG - chr4_4:82799967-82799986 Msa0708980:CDS 40.0%
TTACACACAGCAGTTTCTGT+TGG + chr4_4:82800042-82800061 None:intergenic 40.0%
ATCTCTTACATAACGCGGTA+GGG + chr4_4:82800079-82800098 None:intergenic 40.0%
TATCTCTTACATAACGCGGT+AGG + chr4_4:82800080-82800099 None:intergenic 40.0%
ACCGCGTTATGTAAGAGATA+AGG - chr4_4:82800080-82800099 Msa0708980:intron 40.0%
CCTAACACAAAAAATGCCAG+AGG + chr4_4:82800113-82800132 None:intergenic 40.0%
!!! CCTCTGGCATTTTTTGTGTT+AGG - chr4_4:82800110-82800129 Msa0708980:intron 40.0%
TCTCATCAGTCTAAGCTTGT+TGG - chr4_4:82800216-82800235 Msa0708980:CDS 40.0%
! CTCATCAGTCTAAGCTTGTT+GGG - chr4_4:82800217-82800236 Msa0708980:CDS 40.0%
! TGACTTTGAAAAACTGGGAG+AGG - chr4_4:82800266-82800285 Msa0708980:CDS 40.0%
ACCTTTCTGCAGTTTCAACT+GGG + chr4_4:82800473-82800492 None:intergenic 40.0%
AATGGCATTTGATTCACCAG+AGG - chr4_4:82800560-82800579 Msa0708980:intron 40.0%
TTTACTTGGATATGGTGTGC+AGG - chr4_4:82800654-82800673 Msa0708980:CDS 40.0%
! CACAAGAAGTTTTCAGAGCA+TGG + chr4_4:82800720-82800739 None:intergenic 40.0%
TCCTTACCCTTCTATTATGG+TGG - chr4_4:82800821-82800840 Msa0708980:intron 40.0%
ACCACCATAATAGAAGGGTA+AGG + chr4_4:82800825-82800844 None:intergenic 40.0%
GGACTACCACCATAATAGAA+GGG + chr4_4:82800830-82800849 None:intergenic 40.0%
CTAAGCAACCACAAACATCT+TGG + chr4_4:82800918-82800937 None:intergenic 40.0%
CAAGATGTTTGTGGTTGCTT+AGG - chr4_4:82800916-82800935 Msa0708980:CDS 40.0%
AATTCTTCAGCCTGACATGT+GGG - chr4_4:82800960-82800979 Msa0708980:intron 40.0%
ATTTGACTGGTAGATGCAGT+TGG + chr4_4:82801078-82801097 None:intergenic 40.0%
GCATCTACCAGTCAAATTCT+TGG - chr4_4:82801081-82801100 Msa0708980:CDS 40.0%
ATTTGACTGAAATGGGACTG+TGG - chr4_4:82801276-82801295 Msa0708980:intron 40.0%
CACATGGATAAACCCAACTT+TGG - chr4_4:82801553-82801572 Msa0708980:CDS 40.0%
GGAAGTAAGCTTTCCAAAGT+TGG + chr4_4:82801569-82801588 None:intergenic 40.0%
GGTATCAACAGTGAACTTGA+TGG + chr4_4:82801774-82801793 None:intergenic 40.0%
AAGTTCACTGTTGATACCTC+TGG - chr4_4:82801776-82801795 Msa0708980:CDS 40.0%
GTGAATGTAGGATCAACCTA+AGG - chr4_4:82801887-82801906 Msa0708980:intron 40.0%
TGAGGATGATGATACCAAGA+TGG - chr4_4:82801926-82801945 Msa0708980:CDS 40.0%
CAACAGGTGCAAATCTACTA+AGG + chr4_4:82802015-82802034 None:intergenic 40.0%
CTTAGTAGATTTGCACCTGT+TGG - chr4_4:82802013-82802032 Msa0708980:intron 40.0%
! TAAGCAGAGGAGACCTATTT+TGG + chr4_4:82802332-82802351 None:intergenic 40.0%
AAAATAGGTCTCCTCTGCTT+AGG - chr4_4:82802331-82802350 Msa0708980:five_prime_UTR 40.0%
CAAATATGGATGTCAAGAGG+CGG - chr4_4:82802504-82802523 Msa0708980:five_prime_UTR 40.0%
ACGGCAAGATTGAAGATACT+TGG - chr4_4:82802544-82802563 Msa0708980:five_prime_UTR 40.0%
TCCCGCGAGAATGTGAAAAT+TGG + chr4_4:82797706-82797725 None:intergenic 45.0%
! CAAAACCCCACCCTTTTTAG+AGG - chr4_4:82797739-82797758 Msa0708980:three_prime_UTR 45.0%
! AGTTCCCTCTAAAAAGGGTG+GGG + chr4_4:82797747-82797766 None:intergenic 45.0%
! GAGTTCCCTCTAAAAAGGGT+GGG + chr4_4:82797748-82797767 None:intergenic 45.0%
! TGAGTTCCCTCTAAAAAGGG+TGG + chr4_4:82797749-82797768 None:intergenic 45.0%
! GGGTGAGTTCCCTCTAAAAA+GGG + chr4_4:82797752-82797771 None:intergenic 45.0%
! TGGGTGAGTTCCCTCTAAAA+AGG + chr4_4:82797753-82797772 None:intergenic 45.0%
! TGACGGCGATGGATTTAGTT+GGG + chr4_4:82797890-82797909 None:intergenic 45.0%
TGCATAATCAGGGTGGTTAG+CGG + chr4_4:82798144-82798163 None:intergenic 45.0%
TTACGGATGCATAATCAGGG+TGG + chr4_4:82798151-82798170 None:intergenic 45.0%
!! TATTGGTTCAGTTGGCTGCT+AGG - chr4_4:82798265-82798284 Msa0708980:CDS 45.0%
ACCCACTCACGTTTCAGAAA+AGG + chr4_4:82798328-82798347 None:intergenic 45.0%
TTGGGTTCAAAACCCTAGAG+AGG - chr4_4:82798668-82798687 Msa0708980:CDS 45.0%
TCTGTTGAAGGTTCAAGGAG+TGG - chr4_4:82798696-82798715 Msa0708980:CDS 45.0%
! GAAAAGGGTTGGAGAAGCAT+GGG + chr4_4:82798830-82798849 None:intergenic 45.0%
TGAAAAGGGTTGGAGAAGCA+TGG + chr4_4:82798831-82798850 None:intergenic 45.0%
! AGGTGTTCCAGCGTTGAAAA+GGG + chr4_4:82798845-82798864 None:intergenic 45.0%
! TAGGTGTTCCAGCGTTGAAA+AGG + chr4_4:82798846-82798865 None:intergenic 45.0%
! TTTTCAACGCTGGAACACCT+AGG - chr4_4:82798845-82798864 Msa0708980:intron 45.0%
GCACATGAATAACGTACCTG+AGG + chr4_4:82798871-82798890 None:intergenic 45.0%
GCAGTTGAGTAGTTGCTTCT+TGG - chr4_4:82798963-82798982 Msa0708980:CDS 45.0%
GTGCCCATGGTAGTTACATT+CGG - chr4_4:82799091-82799110 Msa0708980:CDS 45.0%
TGCCCATGGTAGTTACATTC+GGG - chr4_4:82799092-82799111 Msa0708980:CDS 45.0%
TCCCCGAATGTAACTACCAT+GGG + chr4_4:82799097-82799116 None:intergenic 45.0%
TTCCCCGAATGTAACTACCA+TGG + chr4_4:82799098-82799117 None:intergenic 45.0%
TCATTGAACACACGCAGCAT+CGG + chr4_4:82799147-82799166 None:intergenic 45.0%
TACTGCCCGTTATGTTGATC+AGG - chr4_4:82799167-82799186 Msa0708980:CDS 45.0%
ACTGCCCGTTATGTTGATCA+GGG - chr4_4:82799168-82799187 Msa0708980:CDS 45.0%
TCCTCCCTGATCAACATAAC+GGG + chr4_4:82799175-82799194 None:intergenic 45.0%
CTCCTCCCTGATCAACATAA+CGG + chr4_4:82799176-82799195 None:intergenic 45.0%
GCACGTTGTTCTTCCTACAT+AGG + chr4_4:82799490-82799509 None:intergenic 45.0%
AAAGAGATCAGGCACCCAAA+GGG + chr4_4:82799530-82799549 None:intergenic 45.0%
TAAAGAGATCAGGCACCCAA+AGG + chr4_4:82799531-82799550 None:intergenic 45.0%
TTGGGTGCCTGATCTCTTTA+TGG - chr4_4:82799531-82799550 Msa0708980:CDS 45.0%
TGGAAAGAGTTCAGAGCAAC+GGG - chr4_4:82799551-82799570 Msa0708980:intron 45.0%
!! ACCTGGTTTGGCAGATTGTT+GGG - chr4_4:82799603-82799622 Msa0708980:intron 45.0%
TTGTTCAAGCACAGAGTCTG+TGG - chr4_4:82799780-82799799 Msa0708980:CDS 45.0%
GAAAAGCAACCAGCAGAATC+TGG - chr4_4:82799966-82799985 Msa0708980:CDS 45.0%
TAATTGTGCCCAGATTCTGC+TGG + chr4_4:82799978-82799997 None:intergenic 45.0%
GAGATAAGGTATGACACCTC+TGG - chr4_4:82800094-82800113 Msa0708980:intron 45.0%
TTAGACTGATGAGACTCCAC+AGG + chr4_4:82800210-82800229 None:intergenic 45.0%
CTAATGACAGGTTACTGCTG+TGG - chr4_4:82800407-82800426 Msa0708980:CDS 45.0%
ACCCAGTTGAAACTGCAGAA+AGG - chr4_4:82800469-82800488 Msa0708980:intron 45.0%
GACCTTTCTGCAGTTTCAAC+TGG + chr4_4:82800474-82800493 None:intergenic 45.0%
CTGCAGAAAGGTCAAACTTG+CGG - chr4_4:82800481-82800500 Msa0708980:intron 45.0%
! ACCCATTGGTATTGGAGTTC+AGG - chr4_4:82800509-82800528 Msa0708980:intron 45.0%
CCCTGAACTCCAATACCAAT+GGG + chr4_4:82800513-82800532 None:intergenic 45.0%
! CCCATTGGTATTGGAGTTCA+GGG - chr4_4:82800510-82800529 Msa0708980:intron 45.0%
ACCCTGAACTCCAATACCAA+TGG + chr4_4:82800514-82800533 None:intergenic 45.0%
GCAGGCTCAACAGTTAAACA+AGG - chr4_4:82800672-82800691 Msa0708980:CDS 45.0%
GGCCCCTATGAAACTTATAG+CGG - chr4_4:82800757-82800776 Msa0708980:intron 45.0%
GGGACTACCACCATAATAGA+AGG + chr4_4:82800831-82800850 None:intergenic 45.0%
GAATTCTTCAGCCTGACATG+TGG - chr4_4:82800959-82800978 Msa0708980:intron 45.0%
ATTCTTCAGCCTGACATGTG+GGG - chr4_4:82800961-82800980 Msa0708980:intron 45.0%
TGTGACTCCCTCCAATTTGT+GGG - chr4_4:82800984-82801003 Msa0708980:intron 45.0%
TCCCTCCAATTTGTGGGATT+GGG - chr4_4:82800990-82801009 Msa0708980:intron 45.0%
CGGGAGATGATATCAAAGAC+AGG - chr4_4:82801021-82801040 Msa0708980:intron 45.0%
TGGTAGATGCAGTTGGCATA+GGG + chr4_4:82801071-82801090 None:intergenic 45.0%
! TCTACAATCGCAGAGTGCTA+AGG - chr4_4:82801139-82801158 Msa0708980:CDS 45.0%
GTTGATATGGCTGTTGATCG+AGG - chr4_4:82801496-82801515 Msa0708980:CDS 45.0%
GTAGGATCAACCTAAGGTGA+AGG - chr4_4:82801893-82801912 Msa0708980:intron 45.0%
TGATACCAAGATGGCACAGA+TGG - chr4_4:82801935-82801954 Msa0708980:CDS 45.0%
GGTGTAGTTTCAACTTCCAC+AGG + chr4_4:82801994-82802013 None:intergenic 45.0%
ATTTGCACCTGTTGGCATGA+AGG - chr4_4:82802021-82802040 Msa0708980:intron 45.0%
AGCATAGGCAAACCTTAACG+TGG - chr4_4:82802397-82802416 Msa0708980:five_prime_UTR 45.0%
GCATAGGCAAACCTTAACGT+GGG - chr4_4:82802398-82802417 Msa0708980:five_prime_UTR 45.0%
! TGTCAAGAGGCGGTTCATTT+TGG - chr4_4:82802514-82802533 Msa0708980:five_prime_UTR 45.0%
!! ACGGTTTTGGCGCAAGAGTA+AGG + chr4_4:82797855-82797874 None:intergenic 50.0%
! GACGGCGATGGATTTAGTTG+GGG + chr4_4:82797889-82797908 None:intergenic 50.0%
! CTGACGGCGATGGATTTAGT+TGG + chr4_4:82797891-82797910 None:intergenic 50.0%
GAAGAGAGATGGTCGTCAAG+AGG - chr4_4:82797950-82797969 Msa0708980:three_prime_UTR 50.0%
GTCGCTCAGAAAGTTTGTGC+CGG - chr4_4:82798053-82798072 Msa0708980:three_prime_UTR 50.0%
! GTTTGTGCCGGCGTTTACAA+AGG - chr4_4:82798065-82798084 Msa0708980:three_prime_UTR 50.0%
GGTAACGCCTTTGTAAACGC+CGG + chr4_4:82798075-82798094 None:intergenic 50.0%
! GATTTAGAATGCGGCCCGAT+TGG - chr4_4:82798603-82798622 Msa0708980:intron 50.0%
GAAGGTTCAAGGAGTGGTTG+TGG - chr4_4:82798702-82798721 Msa0708980:CDS 50.0%
! TCTCCAACCCTTTTCAACGC+TGG - chr4_4:82798835-82798854 Msa0708980:intron 50.0%
! GTTCCAGCGTTGAAAAGGGT+TGG + chr4_4:82798841-82798860 None:intergenic 50.0%
GAATAACGTACCTGAGGCCT+AGG + chr4_4:82798865-82798884 None:intergenic 50.0%
GTTCACAACATACGTGCCCA+TGG - chr4_4:82799078-82799097 Msa0708980:intron 50.0%
GCCCATGGTAGTTACATTCG+GGG - chr4_4:82799093-82799112 Msa0708980:CDS 50.0%
CGTTATGTTGATCAGGGAGG+AGG - chr4_4:82799174-82799193 Msa0708980:CDS 50.0%
! AGGAGCTTTTGCCGTGTACT+TGG - chr4_4:82799296-82799315 Msa0708980:intron 50.0%
ATGCCATGGCTCCAAGTACA+CGG + chr4_4:82799310-82799329 None:intergenic 50.0%
GGAAAGAGTTCAGAGCAACG+GGG - chr4_4:82799552-82799571 Msa0708980:intron 50.0%
TGCTTCATTGGGGCAGAACA+GGG + chr4_4:82799584-82799603 None:intergenic 50.0%
CCAAACCAGGTGCTTCATTG+GGG + chr4_4:82799594-82799613 None:intergenic 50.0%
GCCAAACCAGGTGCTTCATT+GGG + chr4_4:82799595-82799614 None:intergenic 50.0%
TGCCAAACCAGGTGCTTCAT+TGG + chr4_4:82799596-82799615 None:intergenic 50.0%
!! CACCTGGTTTGGCAGATTGT+TGG - chr4_4:82799602-82799621 Msa0708980:intron 50.0%
!! CCTGGTTTGGCAGATTGTTG+GGG - chr4_4:82799604-82799623 Msa0708980:intron 50.0%
!! TCTAAGCTTGTTGGGAGCAG+AGG - chr4_4:82800225-82800244 Msa0708980:CDS 50.0%
TAGCGGTAGTCCTGTAAGCA+AGG - chr4_4:82800774-82800793 Msa0708980:intron 50.0%
GTGTGACTCCCTCCAATTTG+TGG - chr4_4:82800983-82801002 Msa0708980:intron 50.0%
CTCCCTCCAATTTGTGGGAT+TGG - chr4_4:82800989-82801008 Msa0708980:intron 50.0%
CCCCAATCCCACAAATTGGA+GGG + chr4_4:82800994-82801013 None:intergenic 50.0%
CCCTCCAATTTGTGGGATTG+GGG - chr4_4:82800991-82801010 Msa0708980:intron 50.0%
ACCCCAATCCCACAAATTGG+AGG + chr4_4:82800995-82801014 None:intergenic 50.0%
TGCACCCCAATCCCACAAAT+TGG + chr4_4:82800998-82801017 None:intergenic 50.0%
GGTAGATGCAGTTGGCATAG+GGG + chr4_4:82801070-82801089 None:intergenic 50.0%
CTGGTAGATGCAGTTGGCAT+AGG + chr4_4:82801072-82801091 None:intergenic 50.0%
GGATCAACCTAAGGTGAAGG+AGG - chr4_4:82801896-82801915 Msa0708980:intron 50.0%
TCATCTGCCTCCTTCACCTT+AGG + chr4_4:82801906-82801925 None:intergenic 50.0%
GACAAACAGAGACGAGTGTG+AGG - chr4_4:82801968-82801987 Msa0708980:intron 50.0%
!! GATGATGGGTAGGGTAGGTG+AGG + chr4_4:82797651-82797670 None:intergenic 55.0%
!! GGATTTGGTTCTGACGGCGA+TGG + chr4_4:82797901-82797920 None:intergenic 55.0%
GAGAGATGGTCGTCAAGAGG+CGG - chr4_4:82797953-82797972 Msa0708980:three_prime_UTR 55.0%
TTAGCCGCTGAAACTGCTGC+CGG - chr4_4:82798113-82798132 Msa0708980:three_prime_UTR 55.0%
GCCCGTTATGTTGATCAGGG+AGG - chr4_4:82799171-82799190 Msa0708980:CDS 55.0%
TTGATCAGGGAGGAGGCAAG+AGG - chr4_4:82799181-82799200 Msa0708980:CDS 55.0%
TTGCCGTGTACTTGGAGCCA+TGG - chr4_4:82799304-82799323 Msa0708980:intron 55.0%
GAGTTCAGAGCAACGGGGAA+TGG - chr4_4:82799557-82799576 Msa0708980:intron 55.0%
GTGCTTCATTGGGGCAGAAC+AGG + chr4_4:82799585-82799604 None:intergenic 55.0%
! TTCTGCCCCAATGAAGCACC+TGG - chr4_4:82799586-82799605 Msa0708980:intron 55.0%
! CCCCAATGAAGCACCTGGTT+TGG - chr4_4:82799591-82799610 Msa0708980:intron 55.0%
CCCCAACAATCTGCCAAACC+AGG + chr4_4:82799607-82799626 None:intergenic 55.0%
GCGGTAGGGCAATTGATGCA+AGG + chr4_4:82800065-82800084 None:intergenic 55.0%
! GGAGCAGAGGCTCTAGTAGT+CGG - chr4_4:82800238-82800257 Msa0708980:CDS 55.0%
AACTTGCGGCACAGACCCAT+TGG - chr4_4:82800495-82800514 Msa0708980:intron 55.0%
CGGCACAGACCCATTGGTAT+TGG - chr4_4:82800501-82800520 Msa0708980:intron 55.0%
TGTGGGATTGGGGTGCACTT+CGG - chr4_4:82801001-82801020 Msa0708980:intron 55.0%
! TGATGGCGTCACTTGCAGCT+CGG + chr4_4:82801757-82801776 None:intergenic 55.0%
GGTGAAGGAGGCAGATGATG+AGG - chr4_4:82801908-82801927 Msa0708980:CDS 55.0%
GCACACCATCTGTGCCATCT+TGG + chr4_4:82801943-82801962 None:intergenic 55.0%
TGCACCTGTTGGCATGAAGG+AGG - chr4_4:82802024-82802043 Msa0708980:intron 55.0%
CATGCCTCCTTCATGCCAAC+AGG + chr4_4:82802031-82802050 None:intergenic 55.0%
CATGCCGGCAGCAGTTTCAG+CGG + chr4_4:82798120-82798139 None:intergenic 60.0%
AGGGTGGTTAGCGGTCATGC+CGG + chr4_4:82798135-82798154 None:intergenic 60.0%
CAGGGAGGAGGCAAGAGGAA+AGG - chr4_4:82799186-82799205 Msa0708980:CDS 60.0%
GGAGTCACACCCCACATGTC+AGG + chr4_4:82800973-82800992 None:intergenic 60.0%
GTGGGATTGGGGTGCACTTC+GGG - chr4_4:82801002-82801021 Msa0708980:intron 60.0%
CGTCACTTGCAGCTCGGGTT+CGG + chr4_4:82801751-82801770 None:intergenic 60.0%
GATGGCGTCACTTGCAGCTC+GGG + chr4_4:82801756-82801775 None:intergenic 60.0%
AGAGACGAGTGTGAGGCCTG+TGG - chr4_4:82801975-82801994 Msa0708980:intron 60.0%
CGCTGGAACACCTAGGCCTC+AGG - chr4_4:82798852-82798871 Msa0708980:intron 65.0%
CACTTGCAGCTCGGGTTCGG+AGG + chr4_4:82801748-82801767 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 82797643 82802598 82797643 ID=Msa0708980;Name=Msa0708980
chr4_4 mRNA 82797643 82802598 82797643 ID=Msa0708980-mRNA-1;Parent=Msa0708980;Name=Msa0708980-mRNA-1;_AED=0.19;_eAED=0.19;_QI=296|1|1|1|1|1|17|594|812
chr4_4 exon 82797643 82798344 82797643 ID=Msa0708980-mRNA-1:exon:27331;Parent=Msa0708980-mRNA-1
chr4_4 exon 82798436 82798519 82798436 ID=Msa0708980-mRNA-1:exon:27330;Parent=Msa0708980-mRNA-1
chr4_4 exon 82798629 82798776 82798629 ID=Msa0708980-mRNA-1:exon:27329;Parent=Msa0708980-mRNA-1
chr4_4 exon 82798854 82799003 82798854 ID=Msa0708980-mRNA-1:exon:27328;Parent=Msa0708980-mRNA-1
chr4_4 exon 82799081 82799283 82799081 ID=Msa0708980-mRNA-1:exon:27327;Parent=Msa0708980-mRNA-1
chr4_4 exon 82799446 82799565 82799446 ID=Msa0708980-mRNA-1:exon:27326;Parent=Msa0708980-mRNA-1
chr4_4 exon 82799660 82799824 82799660 ID=Msa0708980-mRNA-1:exon:27325;Parent=Msa0708980-mRNA-1
chr4_4 exon 82799954 82800040 82799954 ID=Msa0708980-mRNA-1:exon:27324;Parent=Msa0708980-mRNA-1
chr4_4 exon 82800140 82800289 82800140 ID=Msa0708980-mRNA-1:exon:27323;Parent=Msa0708980-mRNA-1
chr4_4 exon 82800385 82800477 82800385 ID=Msa0708980-mRNA-1:exon:27322;Parent=Msa0708980-mRNA-1
chr4_4 exon 82800575 82800745 82800575 ID=Msa0708980-mRNA-1:exon:27321;Parent=Msa0708980-mRNA-1
chr4_4 exon 82800867 82800943 82800867 ID=Msa0708980-mRNA-1:exon:27320;Parent=Msa0708980-mRNA-1
chr4_4 exon 82801034 82801274 82801034 ID=Msa0708980-mRNA-1:exon:27319;Parent=Msa0708980-mRNA-1
chr4_4 exon 82801368 82801631 82801368 ID=Msa0708980-mRNA-1:exon:27318;Parent=Msa0708980-mRNA-1
chr4_4 exon 82801738 82801825 82801738 ID=Msa0708980-mRNA-1:exon:27317;Parent=Msa0708980-mRNA-1
chr4_4 exon 82801904 82801965 82801904 ID=Msa0708980-mRNA-1:exon:27316;Parent=Msa0708980-mRNA-1
chr4_4 exon 82802075 82802598 82802075 ID=Msa0708980-mRNA-1:exon:27315;Parent=Msa0708980-mRNA-1
chr4_4 five_prime_UTR 82802303 82802598 82802303 ID=Msa0708980-mRNA-1:five_prime_utr;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82802075 82802302 82802075 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82801904 82801965 82801904 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82801738 82801825 82801738 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82801368 82801631 82801368 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82801034 82801274 82801034 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82800867 82800943 82800867 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82800575 82800745 82800575 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82800385 82800477 82800385 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82800140 82800289 82800140 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82799954 82800040 82799954 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82799660 82799824 82799660 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82799446 82799565 82799446 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82799081 82799283 82799081 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82798854 82799003 82798854 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82798629 82798776 82798629 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82798436 82798519 82798436 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 CDS 82798237 82798344 82798237 ID=Msa0708980-mRNA-1:cds;Parent=Msa0708980-mRNA-1
chr4_4 three_prime_UTR 82797643 82798236 82797643 ID=Msa0708980-mRNA-1:three_prime_utr;Parent=Msa0708980-mRNA-1
Gene Sequence

>Msa0708980

ATGTACGTTGTGAAGAGAGATGGTCGTCAAGAGGCGGTTCATTTCGACAAGATAACGGCGAGATTGAAGAAACTCAGTTACGGTTTAAGCACTGAACACTGTGACCCTGTTTTAGTCGCTCAGAAAGTTTGTGCCGGCGTTTACAAAGGCGTTACCACCAGTCAACTTGATGAATTAGCCGCTGAAACTGCTGCCGGCATGACCGCTAACCACCCTGATTATGCATCCTTGGCTGCTAGGATTGCTGTTTCAAATCTGCACAAGAACACACTGAAATCCTTTTCTGAAACTGTTAAGGTTATGTACAACCATTTTAATCATAGATCTGGGAAGAAAGCTCCGTTGATTGCCGATGATGTGTATGAAATTATCATCAAGAATGCGGCCCGATTGGATAGTGAGATAATCTATGATAGGGATTTTGACTATGATTACTTTGGGTTCAAAACCCTAGAGAGGTCTTATCTGTTGAAGGTTCAAGGAGTGGTTGTGGAAAGACCTCAACATATGATAATGAGGGTTTCTGTTGGAATTCACAAGGATGATGTTGAATCTGCTGTCAAAACTTATCATTTCATGTCTCAGAGATGGTTTACCCATGCTTCTCCAACCCTTTTCAACGCTGGAACACCTAGGCCTCAGTTGAGTAGTTGCTTCTTGGTGTGTATGAAAGAGGATAGTATTGAAGGGATTTATGATACATTGAAGGAGTGTGCTGTTATTAGTAAATCTGCAGGAGGAATTGGTGTTTCTGTTCACAACATACGTGCCCATGGTAGTTACATTCGGGGAACAAATGGAACATCTAATGGTATTGTTCCGATGCTGCGTGTGTTCAATGATACTGCCCGTTATGTTGATCAGGGAGGAGGCAAGAGGAAAGGAGCTTTTGCCGTGTACTTGGAGCCATGGCATGCTGATATATTTGAGTTCTTGGAATTGAAAATAAATCATGGAAAGGAAGAACAACGTGCTCGAGATTTATTTTACGCCCTTTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAACGGGGAATGGTCCCTGTTCTGCCCCAATGAAGCACCTGGTTTGGCAGATTGTTGGGGTGAAGAATATGATAAGTTGTACACTCAGTATGAAAAAGCAGGAAAAGCAAAAAAGATTGTTCAAGCACAGAGTCTGTGGTTTGCAATTTTGAAGTCACAGATAGAAACTGGAAATCCTTACATGCTTTTTAAGGATGCTTGCAATAGGAAAAGCAACCAGCAGAATCTGGGCACAATTAAGTCATCAAATCTGTGCACTGAGATAATCGAGTATACAAGTCCAACAGAAACTGCTGTGTGTAACCTTGCATCAATTGCCCTACCGCGTTATGTAAGAGATAAGGGTTTACCTGTGGAGTCTCATCAGTCTAAGCTTGTTGGGAGCAGAGGCTCTAGTAGTCGGTATTTTGACTTTGAAAAACTGGGAGAGGTTACTGCTGTGGTGACAACCAACCTTAATAAAATAATCGATGTCAACTACTACCCAGTTGAAACTGCAGAAAGGTCAAACTTGCGGCACAGACCCATTGGTATTGGAGTTCAGGGTCTTGCTGATACCTTTATACTACTAGGAATGGCATTTGATTCACCAGAGGCTCAACAGTTAAACAAGGATATTTTTGAGACTATATACTACCATGCTCTGAAAACTTCTTGTGAATTAGCTGCAAAAGAAGGCCCCTATGAAACTTATAGCGGTAGTCCTGTAAGCAAGGGAATTCTTCAGCCTGACATGTGGGGTGTGACTCCCTCCAATTTGTGGGATTGGGGTGCACTTCGGGAGATGATATCAAAGACAGGTGTACGAAATTCACTTCTTGTTGCCCCTATGCCAACTGCATCTACCAGTCAAATTCTTGGCAATAACGAGTGTTTTGAACCATATACTTCTAATATCTACAATCGCAGAGTGCTAAGTGGTGAGTTCGTTGTAGTGAACAAGCATCTTCTTCACGATTTGACTGAAATGGGACTGTGGAATCCTGCACTTAAGAATAAGATTATCTATGACAACGGTTCAGTACAGAATCTGTCAGAAATACCTGTTGAACTGAAAGTCATATACAAAACTGTTTGGGAAATCAAGCAAAAGATATTGGTTGATATGGCTGTTGATCGAGGATGTTACATAGATCAGAGTCAAAGTTTAAATATACACATGGATAAACCCAACTTTGGAAAGCTTACTTCCTTGCATTTTTATGCTTGGTCAAAGGGTTTGAAGACTGGGATGTACTACCTCCGAACCCGAGCTGCAAGTGACGCCATCAAGTTCACTGTTGATACCTCTGGCATTAAAGATCAACCTAAGGTGAAGGAGGCAGATGATGAGGATGATGATACCAAGATGGCACAGATGGTGTGCTCTTTGACAAACAGAGACGAGTGTGAGGCCTGTGGAAGTTGA
Protein sequence

>Msa0708980

MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAGMTANHPDYASLAARIAVSNLHKNTLKSFSETVKVMYNHFNHRSGKKAPLIADDVYEIIIKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGVVVERPQHMIMRVSVGIHKDDVESAVKTYHFMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKEDSIEGIYDTLKECAVISKSAGGIGVSVHNIRAHGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLELKINHGKEEQRARDLFYALWVPDLFMERVQSNGEWSLFCPNEAPGLADCWGEEYDKLYTQYEKAGKAKKIVQAQSLWFAILKSQIETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVRDKGLPVESHQSKLVGSRGSSSRYFDFEKLGEVTAVVTTNLNKIIDVNYYPVETAERSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKTSCELAAKEGPYETYSGSPVSKGILQPDMWGVTPSNLWDWGALREMISKTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFVVVNKHLLHDLTEMGLWNPALKNKIIYDNGSVQNLSEIPVELKVIYKTVWEIKQKILVDMAVDRGCYIDQSQSLNIHMDKPNFGKLTSLHFYAWSKGLKTGMYYLRTRAASDAIKFTVDTSGIKDQPKVKEADDEDDDTKMAQMVCSLTNRDECEACGS*